Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Despite the importance of invertebrate resources for Pacific coral reef islands, few studies have specifically addressed the effects of harvesting on invertebrate assemblages including targeted and non-targeted species. The impacts of recreational harvesting on reef and seagrass invertebrate assemblages in New Caledonia (South Pacific) are investigated by comparing communities in non-MPA and MPA areas. Sampling was done using a standard core method on seagrasses and by visual survey along belt transects on reefs. A total of 371 species were recorded, 174 on seagrasses and 254 on reefs, with 57 common species. Reef and seagrass invertebrate communities were very different in MPA and non-MPA areas. On both habitats, MPAs were identified as undisturbed areas while non-MPAs were defined as moderately disturbed with a predominance of small-sized and opportunistic species. Fishing not only affects target species but also non-target species through secondary effects. These results highlight the necessity of a community based approach for the conservation of resources in tropical poorly known environments.
ISSN: 0165-7836

hal-01311486
http://hal.univ-reunion.fr/hal-01311486
http://hal.univ-reunion.fr/hal-01311486/document
http://hal.univ-reunion.fr/hal-01311486/file/Harvesting%20effects%20on%20tropical%20invertebrate%20assemblages%20in%20New_hal.pdf
DOI : 10.1016/j.fishres.2015.02.001

Éditeur(s) : Springer
Résumé : We investigated the habitat use in green turtles exploiting a 13-ha multispecific seagrass meadow at Mayotte Island, south-western Indian Ocean. A phytoecological survey shows the occurrence of eight seagrass species, dominated by Halodule uninervis and Syringodium isoetifolium, distributed according to four distinct seagrass communities along the depth gradient. Direct underwater censuses show that green turtles occurred all over the meadow. Yet when community relative surface area was taken into account green turtles preferentially frequented the most seaward, biomass-richer S. isoetifolium-dominated community, suggesting that green turtles compensate for their intrinsically nutrient-poor herbivorous diet. Additionally, smaller (80 cm standard curved carapace length, SCCL) individuals also preferentially occurred in the most shoreward H. univervis-dominated community where no larger ([80 cm SCCL) individuals were sighted, suggesting habitat use is indicative of diet selection and may reflect size-specific food requirements and physiology.
Marine Biology (0025-3162) (Springer), 2010-12 , Vol. 157 , N. 12 , P. 2581-2590

Droits : 2010 Springer
http://archimer.ifremer.fr/doc/00018/12918/10201.pdf
DOI:10.1007/s00227-010-1520-7
http://archimer.ifremer.fr/doc/00018/12918/

Éditeur(s) : Gauthier-Villars
Résumé : This review addresses the problem of recently introduced plants in the Mediterranean in order to analyse their vectors, the dispersal processes and the possible ecological and economic consequences. Ninety-five cases (94 macroscopic algae and one seagrass) are listed and discussed. Three major routes of access into the Mediterranean are indicated: shipping, the Suez canal and aqua-culture. The recent introduction of Caulerpa taxifolia along our coasts has called attention to a new potential source: aquaria. Among the successful acclimatizations, cold-temperate Pacific and Atlantic species remain confined to the north of the Mediterranean (Gulf of Lions, Adriatic), whereas some tropical or sub-tropical plants colonize large areas. Some introduced algae proliferate to the detriment of the indigenous Mediterranean vegetation. In contrast with some terrestrial introductions, no population crash has been observed in the Mediterranean, although some notable fluctuations seem to occur in coastal lagoons. From an economic point of view, the two activities most affected by this phenomenon are aquaculture and fishing. With the gradual disappearance of European frontiers, the worldwide development of marine cultures and the multiplication of giant Seaworlds, the transfer of live marine organisms will become routine and the risk of new introductions will considerably increase in the Mediterranean. Only international legislation, established by the countries of the littoral, will be able to control these problems.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 1 , P. 1-23

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00098/20879/18493.pdf
http://archimer.ifremer.fr/doc/00098/20879/

Éditeur(s) : Inter-Research
Résumé : We studied the foraging rhythms of green sea turtles Chelonia mydas on the seagrass beds of N'Gouja Bay, Mayotte Island (Comoros Archipelago) with acoustic transmitters and moored listening stations. We monitored 8 tagged turtles (4 probable males, 3 probable females and 1 immature), from 70 to 109 cm curved carapace length (CCL), for durations ranging from 5 to 92 d. The turtles exhibited a regular diel pattern: they foraged mainly during the day (on average 87% of seagrass detections were between 06:00 and 18:00 h) and rested on the inner reef slope during the night. Night time feeding activities were observed on the seagrass bed when the night light was high. The presence of turtles on the seagrass bed at night was significantly correlated with a night light index (r = 0.54, p = 0.002), which included both moon light and cloudiness indices. Behaviour of the only immature individual observed was similar to adult turtles, although it rested more frequently around noon. All turtles displayed a high fidelity to 1 foraging site within the seagrass bed. Acoustic transmitters and permanent listening stations are an appropriate technique for long-term behavioural studies of turtles, with no human interaction with turtles during tracking, and represent a suitable technique to assess the possible effects of environmental changes or human activities upon green turtle behaviour.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2006 , Vol. 306 , P. 295-302

Droits : Inter-Research 2006
http://archimer.ifremer.fr/doc/2006/publication-3616.pdf
DOI:10.3354/meps306295
http://archimer.ifremer.fr/doc/00000/3616/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Seagrasses structure some of the world's key coastal ecosystems presently in decline due to human activities and global change. The ability to cope with environmental changes and the possibilities for shifts in distribution range depend largely on their evolvability and dispersal potential. As large-scale data usually show strong genetic structure for seagrasses, finer-grained work is needed to understand the local processes of dispersal, recruitment and colonization that could explain the apparent lack of exchange across large distances. We aimed to assess the fine-grained genetic structure of one of the most important and widely distributed seagrasses, Zostera marina, from seven meadows in Brittany, France. Both classic population genetics and network analysis confirmed a pattern of spatial segregation of polymorphism at both regional and local scales. One location exhibiting exclusively the variety 'angustifolia' did not appear more differentiated than the others, but instead showed a central position in the network analysis, confirming the status of this variety as an ecotype. This phenotypic diversity and the high allelic richness at nine microsatellites (2.33-9.67 alleles/locus) compared to levels previously reported across the distribution range, points to Brittany as a centre of diversity for Z. marina at both genetic and phenotypic levels. Despite dispersal potential of several 100 m, a significant pattern of genetic differentiation, even at fine-grained scale, revealed 'genetic patchiness'. Meadows seem to be composed of a mosaic of clones with distinct origins in space and time, a result that calls into question the accuracy of the concept of populations for such partially clonal species.
Molecular Ecology (0962-1083) (Wiley-blackwell Publishing, Inc), 2010-06 , Vol. 19 , N. 12 , P. 2394-2407

Droits : 2010 Blackwell Publishing Ltd
http://archimer.ifremer.fr/doc/00006/11690/8499.pdf
DOI:10.1111/j.1365-294X.2010.04649.x
http://archimer.ifremer.fr/doc/00006/11690/

Éditeur(s) : HAL CCSD
Résumé : In the bay of Aigues-Mortes, the managers of the co astal cities try to preserve the socio-economic and patrimonial stakes against the coastal hazards, such as contamination, storm surge and erosion. In this context, a massive beach nourishment of sand (1 million of m3 for 10km of coastline) was made at the beginning of year 2008 to reduce erosion. The REPBAM project (REchargements et Panaches sédiment aires dans la Baie d'Aigues-Mortes) aims to qualify and quantify by in-situ measurements and numerical modelling: 1. the geomorphological evolution of this modified coast and 2. the impact of the sediment's resuspension on the coastal ecosystems, in particular the one of the Posidonia oceanica seagrass. A numerical modelling "wave/current/sediment" is first implemented for December 2008. Nested and curvilinear grids allow a very high resolution for the beach area but also include the inner shelf where the seagrasses are located. Hydrodynamic and topo-bathymetric measurements were acquired from January to May 2012. Model and measurements results show the same trends during storms: strong currents, seaward migrationof the innerbar, sediment resuspension and turbid on the inner shelf.
Coastal Dynamics 2013
Arcachon, France

hal-00908082
https://hal.archives-ouvertes.fr/hal-00908082

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
The shallow water bivalve Codakia orbicularis lives in symbiotic association with a sulfur-oxidizing bacterium in its gills. The endosymbiont fixes CO2 and thus generates organic carbon compounds, which support the host's growth. To investigate the uncultured symbiont's metabolism and symbiont-host interactions in detail we conducted a proteogenomic analysis of purified bacteria. Unexpectedly, our results reveal a hitherto completely unrecognized feature of the C. orbicularis symbiont's physiology: the symbiont's genome encodes all proteins necessary for biological nitrogen fixation (diazotrophy). Expression of the respective genes under standard ambient conditions was confirmed by proteomics. Nitrogenase activity in the symbiont was also verified by enzyme activity assays. Phylogenetic analysis of the bacterial nitrogenase reductase NifH revealed the symbiont's close relationship to free-living nitrogen-fixing Proteobacteria from the seagrass sediment. The C. orbicularis symbiont, here tentatively named `Candidatus Thiodiazotropha endolucinida', may thus not only sustain the bivalve's carbon demands. C. orbicularis may also benefit from a steady supply of fixed nitrogen from its symbiont-a scenario that is unprecedented in comparable chemoautotrophic symbioses.
ISSN: 2058-5276

hal-01545904
https://hal.archives-ouvertes.fr/hal-01545904
DOI : 10.1038/nmicrobiol.2016.193

Éditeur(s) : EDP Sciences
Résumé : Monitoring the abundance of green turtles (Chelonia mydas) is necessary to assess population trends and risks of collapse. This note presents a study aimed at comparing three techniques for the direct estimation of green turtle numbers in their foraging habitats (seagrass beds and reef flats). The experiment was carried out at Mayotte Island, Western Indian Ocean. The techniques involved were surveys by snorkel, and aerial surveys using a microlight aircraft and a paramotor. Each technique had shortcomings and advantages. While each technique provided estimations of turtle numbers only surveys by snorkel permitted identification of species and sex, whenever visibility and turtle behaviour permitted. Along the shorelines, and over foraging areas, the paramotor was found to be most suitable for direct estimations of turtle numbers. The major advantage of this technique lied in its capability to obtain a synoptic snapshot of turtle distribution over foraging areas. Linear surveys from a microlight aircraft are better suited to monitor foraging areas located further away from the shore.
Le suivi de l'abondance de tortues vertes (Chelonia mydas) est nécessaire pour évaluer l'évolution et éventuellement, le risque d'extinction des populations. L'objectif de cette expérience est de comparer trois techniques d'observation permettant l'évaluation directe de l'abondance totale de tortues vertes sur les aires d'alimentation (herbiers et platiers récifaux). L'étude a été conduite à l'île de Mayotte (ouest de l'océan Indien). Les techniques testées sont le comptage sous-marin et les comptages aériens à partir d'un ultra léger motorisé (ULM) et d'un paramoteur. Les limites de chaque technique utilisée ont été mises en évidence. L'abondance totale des tortues a été estimée par les trois techniques. Seuls, les comptages sous-marins ont permis de préciser des caractéristiques biologiques tels que l'espèce et le sexe, lorsque les conditions de visibilité et le comportement des tortues le permettaient. Le paramoteur paraît le plus adapté pour une estimation directe de l'abondance sur les aires d'alimentation situées à proximité immédiate de la côte. Cette technique permet de disposer d'un état de la répartition des tortues sur les aires d'alimentation à un moment donné. Pour les zones d'alimentation plus éloignées de la côte, l'usage de l'ULM est nécessaire pour réaliser les comptages à partir de transects linéaires.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005-04 , Vol. 18 , N. 2 , P. 193-198

Droits : EDP Sciences, IFREMER, IRD 2005
http://archimer.ifremer.fr/doc/2005/publication-432.pdf
DOI:10.1051/alr:2005021
http://archimer.ifremer.fr/doc/00000/432/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le milieu marin de la Mer des Caraïbes est composé de trois écosystèmes principaux : les récifs coralliens, les mangroves et les herbiers, qui abritent une faune et une flore exceptionnelles. Mais l’équilibre fragile de ces espaces est menacé par les nombreuses activités humaines qui les dégradent progressivement. Face aux enjeux socio-économiques qu’ils représentent pour les pays caribéens, ces derniers ont établi un cadre juridique à l’échelle régionale pour la protection et la gestion de leur ressource marine, la Convention de Carthagène. Après avoir dressé un tableau de la situation environnementale des principaux écosystèmes marins caribéens, il convient de faire un point sur les modes de gestion mis en œuvre pour les préserver.
The marine environment of the Caribbean Sea is composed primarily of three main ecosystems: coral reefs, mangroves and seagrasses, home to fauna and flora. But the delicate balance of these areas is threatened by many human activities that deteriorate gradually deteriorated them. Deal with socio-economic issues around these resources, Caribbean countries have established a legal framework at the regional level to ensure the protection and management of marine resources (the Cartagena Convention). After drawing up an overview of the environmental situation of the main Caribbean marine ecosystems, it should present the management mode adopted to preserve them.
Caraïbes

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.4343
http://journals.openedition.org/etudescaribeennes/4343

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Resource use of seagrass herbivorous fishes Resource use by three juvenile scarids (Cryptotomus roseus, Scarus iseri, Sparisoma radians) in Caribbean seagrass beds
ISSN: 0304-3770

hal-01659844
https://hal.univ-antilles.fr/hal-01659844
https://hal.univ-antilles.fr/hal-01659844/document
https://hal.univ-antilles.fr/hal-01659844/file/Dromard%20et%20al%20Seagrass-Manuscript-HAL.pdf
DOI : 10.1016/j.aquabot.2016.08.003

Éditeur(s) : Inter-research
Résumé : Benthic primary production and respiration were investigated at 4 sites representative of the major coastal communities bordering the Sahara Desert in the Banc d'Arguin, Mauritania, Western Africa. These sites correspond to intertidal Zostera noltii beds (270 km(2)), intertidal bare sediments (88 km(2)), subtidal Cymodocea nodosa beds (374 km(2)), and subtidal bare sediments (311 km(2)). At each site, production-irradiance relationships were established in situ in November 2008 and January 2010, and used to calculate daily carbon fluxes for these communities. In intertidal areas, compared to emersion, the gross maximal photosynthetic rates for Z. noltii bed and bare sediment communities were on average 8-and 7-fold higher during immersion, respectively; community respiration rates were 3-and 18-fold higher during immersion, respectively. The Z. noltii bed was autotrophic during the 2 study periods, with a mean (+/- 95% probability limit) daily net community production of 71.3 +/- 58.6 mmol C m(-2) d(-1). Conversely, net community production was always negative in intertidal regions and subtidal bare sediments (average -7.3 +/- 46.7 mmol C m(-2) d(-1) and -47.0 +/- 38.9 mmol C m(-2) d(-1), respectively); the C. nodosa bed was negative in November (-96.2 +/- 85.1 mmol C m(-2) d(-1)) and positive in January (33.4 +/- 82.6 mmol C m(-2) d(-1)). Community respiration was highest in subtidal communities, indicating active mineralization of organic matter and demonstrating that Z. noltii beds are likely to increase the bio logical richness of the Banc d'Arguin by exporting energy. Our results confirm the ecological importance of seagrass beds in the net coastal carbon fluxes and justify their protection.
Marine Ecology Progress Series (0171-8630) (Inter-research), 2014 , Vol. 501 , P. 11-23

Droits : Inter-Research 2014 · www.int-res.com
http://archimer.ifremer.fr/doc/00189/29987/28496.pdf
DOI:10.3354/meps10683
http://archimer.ifremer.fr/doc/00189/29987/

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Diverse, abundant and usually well-preserved communities of skeletal organisms occur in the lower Pleistocene (Gelasian) siliciclastic deposits of the Greek island of Rhodes. Benthic foraminifers, molluscs and bryozoans have been studied in four measured and sampled sections located in the northern part of the island. Among these bottom-dwelling organisms, numerous extant taxa are good environmental indicators and, combined with field observations and sedimentological data, they provide information on the probable conditions in which they developed. The siliciclastic deposits of the Kritika Formation have been divided into 14 different bio- and lithofacies, which have been further grouped into four facies associations corresponding to four different environmental settings: (1) continental to fluviatile; (2) brackish-water (lagoonal/deltaic); (3) infralittoral (0–20 m); and (4) upper circalittoral (depths of 20–40 m, but also down to c. 50–60 m). Among the marine facies associations, several characteristic biocoenoses have been recognized: soft-bottoms (fine to coarse sands and gravels); seagrass meadows; biogenic calcareous crusts on drowned beachrock slabs; red algal rhodoliths; and bivalve shell beds. In the studied sections, 13 superimposed genetic sequences have been documented. The repetition of similar facies associations within each sequence suggests: (1) a possibly eustasy-controlled, cyclic sedimentation; (2) a general subsidence of Rhodes during the deposition of the studied facies associations; and (3) a mostly constant range of environmental conditions (i.e. sedimentation rates and temperature) throughout the Gelasian.
ISSN: 0016-7568

hal-01277829
https://hal.archives-ouvertes.fr/hal-01277829
DOI : 10.1017/S0016756815000230

Éditeur(s) : Montpellier SupAgro
Résumé : One of the main challenges in ecology is to understand how global changes affect biodiversity and what are the consequences on ecosystem functioning. In this perspective, the functional diversity of communities is a cornerstone since it allows linking environment, community structure and ecosystem properties. The aim of this thesis is thus to improve the understanding of functional diversity dynamic (i) in relation to natural variability of environmental conditions and (ii) under anthropogenic disturbances. As a first step we have developed a new methodological framework allowing to (1) describe fish functional niches based on functional traits, and (2) to quantify functional diversity within (α) and among (β) sites thanks to new indices. In a second step we have studied the spatiotemporal dynamic of the functional structure of fish and nektonic communities from the Terminos lagoon (Mexico). This tropical estuarine ecosystem is an appropriate ecological model for our problematic as it is characterized by a strong environmental variability, a high biological diversity and is under a strong human pressure. We have put in light the stability of the functional and trophic structures of communities along environmental gradients, despite a very strong species turnover. This stability is determined by the dominance of a couple of functional groups inside which species are replacing each others according to their environmental preferences. However, at a long-term scale, we have demonstrated a functional diversity loss in a part of the lagoon despite an increase of species richness. This paradox has to be related to the decrease of species associated to seagrass and the increase of more estuarine species.
Un des enjeux majeurs de l'écologie est de comprendre comment les changements globaux affectent la biodiversité et quelles en sont les conséquences sur le fonctionnement des écosystèmes. Dans cette perspective, la diversité fonctionnelle des communautés est un outil clé permettant de lier l'environnement, la structure des communautés et les propriétés écosystémiques. L'objectif de cette thèse est donc d'améliorer la compréhension de la dynamique de la diversité fonctionnelle (i) face à des conditions environnementales naturellement variables et (ii) face à des perturbations d'origine anthropique. Dans un premier temps nous avons mis en place un socle méthodologie nous permettant de (1) définir la niche fonctionnelle des poissons à partir de traits fonctionnels et (2) de quantifier les diversités fonctionnelles intra (α) et inter (β) échantillons avec de nouveaux indices. Dans un second temps nous avons étudié la dynamique spatio-temporelle de la structure fonctionnelle des communautés ichtyologiques et nectoniques peuplant la lagune de Terminos (Mexique). Cet écosystème estuarien tropical est un modèle d'étude adapté à notre problématique car il présente une forte variabilité environnementale, une forte diversité biologique et est sous forte pression anthropique. Nous avons mis en évidence une stabilité de la structure fonctionnelle et trophique des communautés face aux gradients environnementaux très marqués, et donc malgré un fort taux de remplacement des espèces entre les communautés. Cette stabilité est due à la dominance de quelques groupes fonctionnels à l'intérieur desquels les espèces se remplacent suivant leurs preferendums environnementaux. Néanmoins, à plus long terme, nous avons démontré qu'une portion de la lagune avait subi une perte de diversité fonctionnelle et ce malgré une augmentation de la richesse spécifique. Ce paradoxe est à relier au remplacement des espèces inféodées aux herbiers de phanérogames par des espèces plus estuariennes.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6178.pdf
http://archimer.ifremer.fr/doc/00000/6178/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La création d’une réserve marine au nord de la Martinique, dans la commune du Prêcheur, a donné lieu à une évaluation de la valeur économique des écosystèmes marins et côtiers (EMC) de la zone d’étude. La valeur économique totale (VET) obtenue est de l’ordre de 58 millions d’euros, soit près de 12 millions d’euros par km2. Cette valeur correspond à la somme des valeurs liées aux différents usages directs (pêche, excursion et plongée encadrée, pour l’essentiel), soit près de 3 millions d’euros, aux usages indirects provenant des services écologiques (protection côtière, séquestration carbone, production de biomasse et épuration des eaux, pour l’essentiel), soit environ 200 000 euros, et, à la valeur de non-usage associée à l’existence des écosystèmes et à la transmission de ce patrimoine naturel aux générations futures en dehors d’un quelconque usage présent et futur, soit près de 55 millions d’euros. La création de la réserve devrait engendrer une augmentation de cette valeur en améliorant les services écologiques et les usages ludiques.
The creation of a marine reserve in the north-western part of Martinique, located in the area of Prêcheur, has led to an economic valuation of marine and coastal ecosystems. The total economic value (TEV) has been estimated to about 58 million Euros annually, almost 12 million Euros by km². This value stands for the sum of values associated to: i) direct uses (fishing, diving, beach leisure, etc.) for almost 3 million Euros; ii) indirect uses originating from ecological services (water treatment and nutrient cycling, biomass productivity, carbon sequestration) for 200,000 Euros; and iii) non-uses associated to the existence and bequest to next generation of the natural capital without any consideration of use for about 55 million Euros. The creation of the marine reserve should lead to an increase of this value through an enhancement of ecological services of ecosystems and the non-extractive uses such as tourism and marine leisure.
Martinique

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6620
http://journals.openedition.org/etudescaribeennes/6620

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In chemoautotrophic associations, sequence comparison of 16S rRNA has been the method of choice to study bacterial diversity in the context of host/symbiont coevolution. However, the relative low rate of evolution of 16S rRNA has been shown to result in a diminished capacity to discriminate between closely related bacterial strains or species. Within chemoautotrophic associations, as described in several studies, the use of other genetic markers may reveal previously unobserved strain diversity among gill endosymbionts. Herein, we conducted a survey of symbionts harbored by six species within the Lucinidae family using five genetic markers (dnaE, gyrB, aprA, cbbL genes and the 16S-23S internal transcribed spacer). Thus, within the already described SoLuc₁ bacterial species shared by six host species we observed an obvious bacterial strain diversity. This diversity is structured in function of the geographic location of the hosts and not in function of ecological parameters or host phylogeny. Interestingly at the local level (same seagrass bed environment), we observed an unexpected specificity in host species/bacterial strain association (i.e., all individuals of the same host species harbor the same symbiotic sequence type). This specificity of association implied that there was a control of symbiont strain acquisition by the host, which was confirmed by a cross-infection experiment of starved adults performed in our study. Based upon our results and other evidence from the literature, we hypothesize that this pattern may be due to a ``capture/escape'' type antagonist evolution of the two partners.
ISSN: 0025-3162

hal-01544753
https://hal.archives-ouvertes.fr/hal-01544753
DOI : 10.1007/s00227-016-2949-0

Résumé : Les poissons herbivores jouent un rôle écologique majeur face au phénomène de « coral-algal phase-shift », qui sévit depuis le début des années 80 dans les récifs coralliens de la Caraïbe. Dans cette étude, les habitudes alimentaires des principales espèces de poissons herbivores ont été étudiées afin de comprendre comment ces espèces utilisent et se partagent les ressources trophiques en milieu récifal et dans les herbiers. Les niches trophiques de ces espèces ont été décrites par deux méthodes complémentaires: les analyses des contenus des tractus digestifs et les analyses des isotopes stables du carbone C3C/ 12C) et de l'azoteCSN/ '4N). La qualité nutritionnelle des sources alimentaires a été évaluée par leurs concentrations de macronutriments (protéines, lipides, glucides solubles et insolubles) afin d'expliquer en partie le choix des ressources par les herbivores. Parmi les 14 espèces de poissons étudiées, appartenant aux familles des Pomacentridae, des Acanthuridae et des Scaridae, huit types de niches trophiques ont été décrits, indiquant une diversité fonctionnelle de ces espèces. Les niches trophiques décrites sont occupées par une ou plusieurs espèces, indépendamment de leur morphologie et de leurs affinités taxinomiques. Les résultats de cette étude suggèrent une complémentarité entre ces espèces, en terme d'utilisation des ressources, et soulèvent la question de leur conservation afin de préserver leur rôle écologique dans les écosystèmes côtiers de la Caraïbe.
Herbivorous fishes play a major ecological role against the « coral-algal phase-shift » phenomenon in the coral reefs of the Caribbean. In this study, the feeding patterns of the most important species of herbivorous fishes have been studied to understand how these species use and share the trophic resources on reefs and seagrass beds . Trophic niches of these species have been described by two complementary methods: the analyses oftheir digestive contents and the analyses of stable isotopes of carbon C3C/ J2C) and nitrogen (lsN/14N). The nutritional quality of the sources has been evaluated by their concentrations of macronutrients (proteins, lipids, soluble and insoluble carbohydrates) to explain partially the choice of resources by herbivorous fishes . Among the 14 studied species of herbivorous fishes (Pomacentridae, Acanthuridae and Scaridae), eight types of trophic niches have been described, indicating a functional diversity of these species . The trophic niches are occupied by one or several species, independently oftheir morphology or their taxonomie affinities. The results of this study suggest a complementarity among these species and raise the question of their conservation to preserve their ecological role on marine ecosystems of the Caribbean.

http://www.theses.fr/2013AGUY0597/document

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The Caribbean bivalves Codakia orbicularis (Linnée, 1758) and C. orbiculata (Montagu, 1808) live in seagrass beds of Thalassia testudinum and harbor intracellular sulfuroxidizing gamma-proteobacteria. These bacterial symbionts fix CO2 via the Calvin Benson cycle and provide organic compounds to the bivalve. During experimentally induced starvation, no reduced sulfur compounds and no organic particle food are available; the symbionts could be considered as the sole nutrient source of the host bivalve. A previous study has shown that the intracellular bacterial population decreased considerably during starvation and that bacterial endosymbionts were not released by the bivalves. In this study, the activity of two lysosomal marker enzymes (acid phosphatase and arylsulfatase) was detected using cytochemical experiments coupled with energy-dispersive X-ray transmission electron microscopy during sulfide and organic particle starvation. The degradation of bacterial endosymbionts began after 2 weeks of starvation in C. orbiculata and after 3 weeks in C. orbicularis. Degradation processes seem to be continuous over several months and could be responsible for the disappearance of the bacterial endosymbionts within the gills during starvation. These data suggest that the host use symbionts as a nutrient source to survive a hunger crisis. The carbon transfer from the symbionts to the host could be flexible and could consist in transfer of organic matter, “milking,” under normal feeding conditions and digestion of the symbionts under starved conditions.
ISSN: 1059-910X

Droits : info:eu-repo/semantics/OpenAccess
hal-01206367
https://hal.univ-antilles.fr/hal-01206367
https://hal.univ-antilles.fr/hal-01206367/document
https://hal.univ-antilles.fr/hal-01206367/file/revised%20version%20to%20be%20submitted%20to%20the%20editor3oct.pdf
DOI : 10.1002/jemt.22458

Éditeur(s) : Centre français du littoral
Résumé : This study presents the first results of an ongoing research program that aims to derive thematic maps of the intertidal lagoon of Arcachon (SW Atlantic coast of France) from space imagery. At this stage, we present the results of the tests performed on Formosat-2 imagery. Several classification strategies have been tried with the aim to discriminate the sedimentary facies and the main species of the lagoon. The classes calculated by an optimized unsupervised clustering method, based on simulated annealing global minimization technique, were used to train a supervised classification algorithm. This approach allowed us to derive a bio-sedimentary map which overall accuracy is about 84%. Also, this method has the advantage of describing the fraction of vegetation cover of the seagrass.
Cette étude présente les premiers résultats d’un vaste programme de recherche qui ambitionne de définir une méthode de cartographie des platiers intertidaux du Bassin d’Arcachon (France) par télédétection. Les résultats présentés ici concernent les tests effectués sur l’imagerie Formosat-2 dans le but de discriminer les sédiments et les principales espèces végétales de la lagune. Le résultat d'une classification non supervisée optimisée par la méthode du recuit simulé est ensuite utilisé pour entraîner une classification par minimum de distance. Cette approche permet d’obtenir une carte des faciès bio-sédimentaires dont la précision est estimée à plus de 84 %. Cette méthode présente, en outre, un excellent potentiel pour la détermination du pourcentage de couvert végétal des herbiers à zostères.
Paralia (1760-8716) (Centre français du littoral), 2008 , N. 10 , P. 563-572

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00254/36572/35110.pdf
DOI:10.5150/jngcgc.2008.054-L
http://archimer.ifremer.fr/doc/00254/36572/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La mer des Caraïbes abrite une diversité de biotopes littoraux qui favorisent l’installation de trois écosystèmes - les récifs coralliens, les mangroves et les herbiers – riches et complexes. On y trouve également d’autres formations uniques tels les stromatolithes ou les trous bleus. Des conditions climatiques et océanographiques homogènes permettent à l’ensemble du bassin Caraïbe de constituer une unité sur les plans floristique et faunistique. Cette unité n’exclut pas une diversité biologique exceptionnelle avec notamment des espèces endémiques à la zone ; ce qui confère aux côtes des pays caribéens un intérêt écologique, paysager et scientifique certain. La reconnaissance sur le plan international et régional de l’importance de la Mer des Caraïbes mais aussi de sa fragilité a permis au milieu marin caribéen d’acquérir son statut de patrimoine naturel.En plus des services écosystémiques qu’elle rend (ressources halieutiques, protection des littoraux…), la Mer des Caraïbes constitue un atout indéniable dans le cadre du développement touristique de la zone aussi bien par le balnéaire que, plus récemment, par l’écotourisme. Ce dernier s’appuie généralement sur des aires marines protégées et doit permettre un développement durable des îles.A partir d’une étude de cas, le parc marin de Saba, l’objectif de cette étude est d’analyser les rapports entre patrimoine naturel marin et l’écotourisme, ainsi que les impacts économiques, sociaux et environnementaux de la mise en valeur de ces ressources.
The Caribbean Sea is home to a diversity of coastal habitats that support the installation of three rich and complex ecosystems - coral reefs, mangroves and seagrasses -. There are also other unique formations such as stromatolites or blue holes. Oceanographic and climatic conditions allow homogeneous throughout the Caribbean basin to form a unit in terms of flora and fauna. This unit does not exclude an exceptional biological diversity, including species endemic to the area, which give the coasts of the Caribbean countries an ecological, landscape and some science. Recognition on the international and regional importance of the Caribbean Sea but also its fragile marine environment has allowed the Caribbean to gain its status as a natural heritage.In addition to the ecosystem services it render (fisheries, coastal protection ...), the Caribbean Sea is a definite asset in the development of tourism in the area by the seaside as well as, more recently, ecotourism. The latter is generally based on marine protected areas and should facilitate the sustainable development of islands.From a case study, the Saba Marine Park, the objective of this study is to analyze the relationship between natural heritage and marine ecotourism, as well as economic, social and environmental development of these resources.
Saba

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5487
http://journals.openedition.org/etudescaribeennes/5487

Éditeur(s) : Gauthier-Villars
Résumé : In the sedimentary areas surrounding the Florida Keys, Soritidae and Peneroplidae are very well represented. These benthic foraminifera are generally attached to seagrasses or algae and more rarely to carbonate deposits. The colouring of their protoplasm results from the nature of endosymbiotic algae. The principal species represented are: Androsina lucasi (never recorded before in Florida) which lives only in the margino-littoral biotopes where the salinity is highly variable; Archaias angulatus and Amphisorus hemprichii which live in the biotopes of the littoral platform but also in those of the interior margin of the bay where the variations of salinity are weak; Cyclorbiculina compressa and Peneroplis proteus which live for the main part in the littoral biotopes of the oceanic platform where the salinity is normal and quite constant; five other species of secondary importance take the number of taxa observed alive in the Keys area up to ten. Moreover, if the comparison of the biocenoses and thanatocenoses emphasizes their comparative similitude, knowledge of the biocenoses permits a better understanding of their adaptation to present-day environments.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1991 , Vol. 14 , N. 5 , P. 515-524

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00103/21379/18979.pdf
http://archimer.ifremer.fr/doc/00103/21379/