Éditeur(s) : Public Library Science
Résumé : Background: The Astrophorida (Porifera, Demospongiae(rho)) is geographically and bathymetrically widely distributed. Systema Porifera currently includes five families in this order: Ancorinidae, Calthropellidae, Geodiidae, Pachastrellidae and Thrombidae. To date, molecular phylogenetic studies including Astrophorida species are scarce and offer limited sampling. Phylogenetic relationships within this order are therefore for the most part unknown and hypotheses based on morphology largely untested. Astrophorida taxa have very diverse spicule sets that make them a model of choice to investigate spicule evolution. Methodology/Principal Findings: With a sampling of 153 specimens (9 families, 29 genera, 89 species) covering the deep- and shallow-waters worldwide, this work presents the first comprehensive molecular phylogeny of the Astrophorida, using a cytochrome c oxidase subunit I (COI) gene partial sequence and the 59 end terminal part of the 28S rDNA gene (C1-D2 domains). The resulting tree suggested that i) the Astrophorida included some lithistid families and some Alectonidae species, ii) the sub-orders Euastrophorida and Streptosclerophorida were both polyphyletic, iii) the Geodiidae, the Ancorinidae and the Pachastrellidae were not monophyletic, iv) the Calthropellidae was part of the Geodiidae clade (Calthropella at least), and finally that v) many genera were polyphyletic (Ecionemia, Erylus, Poecillastra, Penares, Rhabdastrella, Stelletta and Vulcanella). Conclusion: The Astrophorida is a larger order than previously considered, comprising ca. 820 species. Based on these results, we propose new classifications for the Astrophorida using both the classical rank-based nomenclature (i.e., Linnaean classification) and the phylogenetic nomenclature following the PhyloCode, independent of taxonomic rank. A key to the Astrophorida families, sub-families and genera incertae sedis is also included. Incongruences between our molecular tree and the current classification can be explained by the banality of convergent evolution and secondary loss in spicule evolution. These processes have taken place many times, in all the major clades, for megascleres and microscleres.
Plos One (1932-6203) (Public Library Science), 2011-04 , Vol. 6 , N. 4 , P. -

Droits : 2011 Ca´rdenas et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00137/24817/22903.pdf
DOI:10.1371/journal.pone.0018318
http://archimer.ifremer.fr/doc/00137/24817/

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : Le développement de modèles de dynamique forestière adaptés aux forêts tropicales humides est compliqué par la très grande diversité spécifique caractérisant ces forêts. Les modélisateurs ont souvent eu recours, pour simplifier le problème, à des techniques de regroupement d'espèces. Il existe des méthodes diverses de regroupement, qui relèvent de trois grands types de stratégie : (i) stratégie écologique subjective, (ii) stratégie écologique basée sur l'analyse de données, (iii) stratégie des processus de dynamique populationnelle. Dans le cadre des deux premières stratégies, une espèce est affectée à un groupe et un seul alors que dans le cadre de la troisième, des groupes d'espèces sont définis pour chacun des processus de dynamique (recrutement, croissance, mortalité) pris séparément, et chaque espèce est affectée à trois groupes. Dans la littérature, on trouve peu d'exemples de congruence ou de convergence entre les groupes définis par ces différentes méthodes. Ceci peut être expliqué par l'indépendance existant entre les caractères utilisés pour fabriquer tel ou tel groupe, ou encore par la grande variabilité intra-spécifique de ces caractères. Nous argumentons et concluons sur le fait que le recours à la stratégie des processus de dynamique paraît être la meilleure pour construire des groupes d'espèces adaptés à la prédiction de la dynamique des forêts tropicales.
ISSN: 1286-4560

hal-01032060
https://hal.archives-ouvertes.fr/hal-01032060
DOI : 10.1051/forest:2005084

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Heartwood/sapwood profile and the tradeoff between trunk and crown increment in a natural forest: the case study of a tropical tree (Dicorynia guianensis Amsh., Fabaceae) Key message Sapwood area and the radial growth rate of the trunk follow the same pattern at breast height, with an initial increase and subsequent constant value, resulting from the increasing growth allocation toward the crown rather than tree decline. Heartwood area and heartwood volume in the trunk increase more rapidly after this shift occurs. Abstract Sapwood (SW) and heartwood (HW) are two functionally distinct classifications of wood in perennial stems for which quantities can vary greatly in tropical trees. Numerous positive correlations have been found between the radial growth rate (RGR) and SW quantity; however, variations in the SW/HW quantities have not been studied in light of the ontogenetic variation of RGR. Wood core sampling, intensive measurements of tree structure (number of branches, stem volumes), and radial growth monitoring were performed on an abundant and highly exploited tree species in French Guiana (Dicorynia guianensis) to investigate the relationship between RGR, SW/HW quantity, tree structure, and their variations on the course of a tree's ontogeny. SW area and RGR followed the same pattern of variation throughout tree development, both increasing first and reaching a steady state after 50 cm DBH (diameter at breast height). After this value, we observed a strong increase in both the HW area and HW volume increment, concomitant with a more rapid increase in crown volume. The stabilization of RGR for trees with DBH >50 cm was related not to a tree's decline but rather to an increasing wood allocation to the crown, confirming that RGR at breast height is a poor indicator of whole-tree growth for bigger individuals. We also confirmed that HW formation is an ontogenetic process managing SW quantity that is continuously and increasingly produced within the crown as the tree grows. This study highlights the effect of growth-mediated ontogenetic changes on the localization of water and carbohydrate storage within a tree, resulting from SW and HW dynamics throughout tree ontogeny.
ISSN: 0931-1890

hal-01654003
https://hal.archives-ouvertes.fr/hal-01654003
https://hal.archives-ouvertes.fr/hal-01654003/document
https://hal.archives-ouvertes.fr/hal-01654003/file/Lehnebach%20et%20al.%E2%80%94Trees%202016-%20Own%20version.pdf
DOI : 10.1007/s00468-016-1473-7

Éditeur(s) : HAL CCSD
Résumé : International audience
Tension wood, a tissue developed by angiosperm trees to actively recover their verticality, has long been defined by the presence of an unlignified cellulosic inner layer in the cell wall of fibres, called the G-layer. Although it was known that some species have no G-layer, the definition was appropriate since it enabled easy detection of tension wood zones using various staining techniques for either cellulose or lignin. For several years now, irrespective of its anatomical structure, tension wood has been defined by its high mechanical internal tensile stress. This definition enables screening of the diversity of cell walls in tension wood fibres. Recent results obtained in tropical species with tension wood with a delay in the lignification of the G-layer opened our eyes to the effective presence of large amounts of lignin in the G-layer of some species. This led us to review older literature mentioning the presence of lignin deposits in the G-layer and give them credit. Advances in the knowledge of tension wood fibres allow us to reconsider some previous classifications of the diversity in the organisation of the fibre walls of the tension wood.
ISSN: 0928-1541

hal-01636686
https://hal.archives-ouvertes.fr/hal-01636686
https://hal.archives-ouvertes.fr/hal-01636686/document
https://hal.archives-ouvertes.fr/hal-01636686/file/2017_Ghislain-Clair_IAWAJ_DiversityOrganisationLignificationTensionWoodFibreWalls-AReview.pdf
DOI : 10.1163/22941932-20170170