Éditeur(s) : Elsevier
Résumé : The multi-component aspect of species diversity of groundfish assemblages was examined on the basis of a set of experimental trawl surveys conducted on the east coast of Corsica. We analysed and compared the structuration of diversity within three different bathymetric strata: the continental shelf (60-120 m depth), the upper slope (250-400 m) and the lower slope (450-570 m). For each of these three bathymetric strata, we simultaneously analysed 12 indices that are theoretically complementary and relate to 4 diversity components: (1) the number of species, (2) rarity, (3) evenness and (4) taxonomic diversity. Principal component analysis based on Spearman's correlation coefficients was carried out to investigate empirical relationships between the selected indices. Our results showed not only that a single diversity index cannot provide a complete view of the groundfish diversity along the east coast of Corsica, but also that-in some cases-one index cannot even encapsulate a complete description of a specific diversity component. We also found that the nature and the number of independent diversity components slightly varied from one bathymetric stratum to another. The main differences-which mainly occurred in the deepest bathymetric stratum-might be associated with lower density of individuals and lower dominance of some species at deeper depths. Finally, this study is the first dealing with groundfish diversity in this area, which is currently characterized by one of the lowest fishing intensity rates in the northern Mediterranean Sea. It might be considered as a first '' reference state '' with a view to monitoring the spatio-temporal changes in species diversity patterns along the east coast of Corsica in the future. (C) 2007 Elsevier B.V. All rights reserved.
Fisheries Research (0165-7836) (Elsevier), 2007-12 , Vol. 88 , N. 1-3 , P. 120-132

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3512.pdf
DOI:10.1016/j.fishres.2007.08.003
http://archimer.ifremer.fr/doc/00000/3512/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Understanding the factors underlying the spatio-temporal distribution of infectious diseases provides useful information regarding their prevention and control. Dengue fever spatio-temporal patterns result from complex interactions between the virus, the host, and the vector. These interactions can be influenced by environmental conditions. Our objectives were to analyse dengue fever spatial distribution over New Caledonia during epidemic years, to identify some of the main underlying factors, and to predict the spatial evolution of dengue fever under changing climatic conditions, at the 2100 horizon. We used principal component analysis and support vector machines to analyse and model the influence of climate and socio-economic variables on the mean spatial distribution of 24,272 dengue cases reported from 1995 to 2012 in thirty-three communes of New Caledonia. We then modelled and estimated the future evolution of dengue incidence rates using a regional downscaling of future climate projections. The spatial distribution of dengue fever cases is highly heterogeneous. The variables most associated with this observed heterogeneity are the mean temperature, the mean number of people per premise, and the mean percentage of unemployed people, a variable highly correlated with people's way of life. Rainfall does not seem to play an important role in the spatial distribution of dengue cases during epidemics. By the end of the 21st century, if temperature increases by approximately 3°C, mean incidence rates during epidemics could double. In New Caledonia, a subtropical insular environment, both temperature and socio-economic conditions are influencing the spatial spread of dengue fever. Extension of this study to other countries worldwide should improve the knowledge about climate influence on dengue burden and about the complex interplay between different factors. This study presents a methodology that can be used as a step by step guide to model dengue spatial heterogeneity in other countries.
ISSN: 1935-2727

Droits : http://creativecommons.org/licenses/by/
pasteur-01247037
https://hal-riip.archives-ouvertes.fr/pasteur-01247037
https://hal-riip.archives-ouvertes.fr/pasteur-01247037/document
https://hal-riip.archives-ouvertes.fr/pasteur-01247037/file/journal.pntd.0004211.pdf
DOI : 10.1371/journal.pntd.0004211

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Selon le Consensus de Washington (1989), la Banque mondiale et les institutions internationales, la bonne gouvernance signifie la gestion saine du développement. L’objectif du présent article est d’analyser le lien entre bonne gouvernance et développement économique dans le cas des Etats insulaires. Après l’examen de la bonne gouvernance dans le cas particulier des Etats insulaires, nous utilisons la méthodologie de l’analyse en composantes principales afin de distinguer les caractéristiques institutionnelles et la gouvernance des économies insulaires selon leur niveau de développement économique.
According to Washington Consensus (1989), World Bank and international institutions, good governance means sound development management. The aim of this paper is to analyze the link between good governance and economic development in the case study of Island States. After the examination of the good governance in Island States, we use the principal component analysis in order to distinguish the institutional characteristics and the governance of the Island States in accordance with their level of development.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6784
http://journals.openedition.org/etudescaribeennes/6784

Éditeur(s) : HAL CCSD CSIRO Publishing
Résumé :  
Leaf traits of tropical tree species display an important inter-specific diversity, as detected for instance in the large range of values of leaf mass : area ratio (LMA). They also demonstrate a large irradiance-elicited plasticity, but there is still debate whether this plasticity differs among species. To address this question, leaf traits were recorded on saplings from 12 rainforest tree species in French Guiana, grown under approximately 5, 10 and 20% relative irradiance. Fifteen structural and physiological leaf traits related to photosynthesis were measured. The irradiance-elicited plasticity was quantified using a relative distance plasticity index. A large inter-specific diversity was detected for all leaf traits. A principal component analysis opposed species with a large mass-based photosynthesis, respiration, N content and photosynthetic nitrogen use efficiency, to species with a large leaf mass : area ratio, LMA. The two pioneer species used in this study displayed the largest photosynthetic capacity (and lowest LMA) and ranked at one end of the species continuum. Relative irradiance affected almost all traits with the exception of mass-based photosynthesis.Aweak interaction was found between species and relative irradiance and the species ranking was maintained among relative irradiance treatments for the majority of the traits. A principal component analysis of the values of relative-distance plasticity index failed to reveal any consistent patterns of traits or species.Weconcluded that irradiance-elicited plasticity of leaf traits was similar among species irrespective ofLMA and successional status, despite the occurrence of a large inter-specific diversity for the investigated traits
ISSN: 1445-4408

hal-01032129
https://hal.archives-ouvertes.fr/hal-01032129
DOI : 10.1071/FP09119

Éditeur(s) : University of Miami
Résumé : This work aims to describe fishing activity in Guadeloupe through a typology. The samply unit y is the landing represented by a profile of specific composition. Using multivariate analysis methods allows to synthesize this fishing multi specises and multi fishing tackles. Principal Component Analysis and classification regroup landings. Then, segmentation method separateses classes by species composition. Typology is obtained by association of classes and tackles. The contraist between landings of reef fishes realized with traps and those which search for pelagics is clearly shown. Landings of queen conch and landings without fishes are separated in two classes.
L'objectif de cette étude est de décrire par une typologie, l'activité de pêche en Guadeloupe. L'unité d'échantillonnage est la sortie représentée à l'aide d'un profil de la composition spécifique du débarquement. L'utilisation des méthodes d'analyses de données multivariées permet d'appréhender de façon synthétique cette pêcherie muIti-espèce et multi-engin. L'analyse en composantes principales couplée à une classification regroupe les sorties en classes homogènes. Une fois les classes définies, la segmentation les discrimin à partir de leur composition spécifique. La typologie est obtenue en associant les classes et les engins. Elle fait parfaitement ressortir l'opposition entre les sorties ciblant les poissons de fond, essentiellement réalisées aux casiers, et celles recherchant des pélagiques. Les sorties ciblant les langoustes sont séparées en deux classes en fonction du pourcentage en poissons de fond pêchés conjointement. Les sorties capturant des lambis et celles de captures nulles sont regroupées dans deux classes différentes.
Proceedings - Gulf and Caribbean Fisheries Institute, University of Miami (0072-9019) (University of Miami), 1998 , Vol. 50 , P. 228-248

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00113/22408/20105.pdf
http://archimer.ifremer.fr/doc/00113/22408/

Éditeur(s) : Public Library Science
Résumé : Like hydrothermal vents along oceanic ridges, cold seeps are patchy and isolated ecosystems along continental margins, extending from bathyal to abyssal depths. The Atlantic Equatorial Belt (AEB), from the Gulf of Mexico to the Gulf of Guinea, was one focus of the Census of Marine Life ChEss (Chemosynthetic Ecosystems) program to study biogeography of seep and vent fauna. We present a review and analysis of collections from five seep regions along the AEB: the Gulf of Mexico where extensive faunal sampling has been conducted from 400 to 3300m, the Barbados accretionary prism, the Blake ridge diapir, and in the Eastern Atlantic from the Congo and Gabon margins and the recently explored Nigeria margin. Of the 72 taxa identified at the species level, a total of 9 species or species complexes are identified as amphi-Atlantic. Similarity analyses based on both Bray Curtis and Hellinger distances among 9 faunal collections, and principal component analysis based on presence/absence of megafauna species at these sites, suggest that within the AEB seep megafauna community structure is influenced primarily by depth rather than by geographic distance. Depth segregation is observed between 1000 and 2000m, with the middle slope sites either grouped with those deeper than 2000m or with the shallower sites. The highest level of community similarity was found between the seeps of the Florida escarpment and Congo margin. In the western Atlantic, the highest degree of similarity is observed between the shallowest sites of the Barbados prism and of the Louisiana slope. The high number of amphi-atlantic cold-seep species that do not cluster according to biogeographic regions, and the importance of depth in structuring AEB cold-seep communities are the major conclusions of this study. The hydrothermal vent sites along the Mid Atlantic Ridge (MAR) did not appear as "stepping stones" for dispersal of the AEB seep fauna, however, the south MAR and off axis regions should be further explored to more fully test this hypothesis.
Plos One (1932-6203) (Public Library Science), 2010-08 , Vol. 5 , N. 8 , P. 1-11

Droits : © 2010 Olu et al.
http://archimer.ifremer.fr/doc/00011/12207/8975.pdf
DOI:10.1371/journal.pone.0011967
http://archimer.ifremer.fr/doc/00011/12207/

Éditeur(s) : HAL CCSD Elsevier
Résumé : Our objective was to compare fruit morphology, physico-chemistry and bioactive compounds content ofthe edible pulp of six Mammea americana accessions. The results showed that this fruit was rather big,weighing on average 600 to 1100 g depending on the accession, and spherical to oblate-shaped. The pulprepresented between 50 and 70% of the weight of the whole fruit. The pulp adhered only partially to theseeds in 5 of the 6 accessions studied, while the last one exhibited full adherence. The fresh pulp wasacidic, sweet, succulent and crunchy. The fruits studied had a variety of qualities, providing variousopportunities for post-harvest uses: fruit salads, nectar preparation, jams and jellies, or export. We haveestablished for the first time the total phenolic compounds and total flavonoids contents in the pulp ofmamey apple fruits. The pulp colour was highly correlated with total phenolic compounds and total carotenoidscontents.
ISSN: 0308-8146

hal-01606022
https://hal.archives-ouvertes.fr/hal-01606022
DOI : 10.1016/j.foodchem.2017.04.145
PRODINRA : 395676

Éditeur(s) : HAL CCSD
Résumé : International audience
To study social health inequalities, contextual data may constitute an appropriate alternative to individual socioeconomic characteristics, often hard to retrieve. Indices can be used to summarize the multiple dimensions of the neighborhood socioeconomic status. The main objectives of this work are to develop a statistical procedure to create a neighborhood socioeconomic index and to investigate the influence of the clustering method of the deprivation index on the measure of health inequalities. Our study setting is composed of three major French metropolitan areas: Lille, Lyon and Marseille. The statistical unit is the French census block. The methodology uses several successive principal components analyses to select variables and create the index. Deprivation categories are drawn with hierarchical clustering on principal components. Twenty socioeconomic variables are selected in the neighborhood deprivation index. An optimal clustering obtained by HC is in three classes and the clusters are ordered along the first axis of the PCA.
SFDS - 44èmes journées de Statistique - 2012
Bruxelles, Belgium

hal-00734769
https://hal.archives-ouvertes.fr/hal-00734769
https://hal.archives-ouvertes.fr/hal-00734769/document
https://hal.archives-ouvertes.fr/hal-00734769/file/submission_44.pdf

Éditeur(s) : HAL CCSD IEEE
Résumé : International audience
The main challenge in prostate cancer radiotherapy is to deliver the prescribed dose to the clinical target while minimizing the dose to the neighboring organs at risk and thus avoiding subsequent toxicity-related events. With the aim of improving toxicity prediction following prostate cancer radiotherapy, the goal of our work is to propose a new predictive variable computed with independent component analysis to predict late rectal toxicity, and to compare its performance to other models (logistic regression, normal tissue complication probability model and recent principal component analysis approach). Clinical data and dose-volume histograms were collected from 216 patients having received 3D conformal radiation for prostate cancer with at least two years of follow-up. Independent component analysis was trained to predict the risk of 3-year rectal bleeding Grade extgreater= 2. The performance of all the models was assessed by computing the area under the receiving operating characteristic curve. Clinical parameters combined with the new variable were found to be predictors of rectal bleeding. The mean area under the receiving operating curve for our proposed approach was 0:75. The AUC values for the logistic regression, the Lyman-Kutcher-Burman model and the recent principal component analysis approach were 0:62, 0:53 and 0:62, respectively. Our proposed new variable may be an useful new tool in predicting late rectal toxicity. It appears as a strong predictive variable to improve classical models
2015 37th annual international conference of the IEEE Engineering in Medicine and Biology Society
Milan, Italy

hal-01304750
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01304750

Éditeur(s) : HAL CCSD Scientific Research Publishing
Résumé : International audience
In order to study social inequalities, indices can be used to summarize the multiple dimensions of the socioeconomic status. As a part of the Equit'Area Project, a public health program focused on social and environmental health inequalities; a statistical procedure to create (neighborhood) socioeconomic indices was developed. This procedure uses successive principal components analyses to select variables and create the index. In order to simplify the application of the procedure for non-specialists, the R package SesIndexCreatoR was created. It allows the creation of the index with all the possible options of the procedure, the classification of the resulting index in categories using several classical methods, the visualization of the results, and the generation of automatic reports.
ISSN: 2161-718X

hal-01161775
https://hal.archives-ouvertes.fr/hal-01161775
https://hal.archives-ouvertes.fr/hal-01161775/document
https://hal.archives-ouvertes.fr/hal-01161775/file/OJS_2015060814030742.pdf
DOI : 10.4236/ojs.2015.54031

Éditeur(s) : HAL CCSD Elsevier
Résumé : Pb, Hf, Nd and Sr isotopes of basaltic lavas from the two Reunion Island volcanoes are reported in order to examine the origin of the sources feeding these volcanoes and to detect possible changes through time. Samples, chosen to cover the whole lifetime of the two volcanoes (from 2 Ma to present), yield a chemically restricted (compared to 0113 lavas) but complex distribution. Reunion plume isotopic characteristics have been defined on the basis of the composition of uncontaminated shield-building lavas from the Piton de la Fournaise volcano. The average epsilon(Nd), epsilon(Hf), Sr-87/Sr-86 and Pb-206/Pb-204, Pb-207/Pb-204, and Pb-208/Pb-204 isotope ratios calculated for this component are +4.4, +9.1, 0.70411, 18.97, 15.59 and 39.03, respectively. In Pb-Pb isotope space, each volcano defines a distinct linear trend but slight variation are also detected within the various volcanic sequences. The Piton des Neiges volcano yields a distinct and significantly more scattered isotopic distribution than Piton de la Fournaise for both Pb, Hf and Nd isotope tracers. A principal component analysis of the Pb isotope data from Piton de la Fournaise reveals a major contribution of the C and EM-1 components (with a clear Dupal flavor) as main components for the modem Reunion plume. The same components have been identified for Piton des Neiges but with a stronger participation of a depleted mantle component and a weaker EM-1 contribution. The compositional change of the lavas erupted by the Piton des Neiges and Piton de la Fournaise volcanoes is attributed to the impingement of two small-scale blobs of plume material at the base of the Reunion lithosphere. Compared to other hot-spots worldwide, in particular Hawaii and Kerguelen, magmas beneath Reunion are generated from a considerably more homogeneous, compositionally more primitive plume higher in Pb-206. Although shallow-level contamination processes have been locally detected they did not alter significantly the composition of the plume magmas. This is tentatively attributed to mantle dynamics producing small, high-velocity blobs that ascend rapidly through the lithosphere, and to the lack of a well-developed magma chamber at depth in the lithosphere.
ISSN: 0012-821X

hal-00412196
https://hal.archives-ouvertes.fr/hal-00412196
DOI : 10.1016/j.epsl.2007.11.018

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureushost cell interactions.
journées des Microbiologistes de l' INRA 2012
L'Isle sur la Sorgue, France

hal-01209365
https://hal.archives-ouvertes.fr/hal-01209365
PRODINRA : 174569

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureus-host cell interactions.
International Symposium on Staphylococci and Staphylococcal Infections -ISSSI-2012
Lyon, France

hal-01209356
https://hal.archives-ouvertes.fr/hal-01209356
PRODINRA : 173265

Éditeur(s) : HAL CCSD IWA Publishing
Résumé : International audience
This study proposes a new approach for improving resource quality management, monitoring and treatment plant management, whatever the environmental and climatic stressors. First trend analysis of water quality at a river basin scale, based on historical water quality data and multivariate exploitation (principal component analysis, PCA), led to a classification of the monitoring stations with regard to the main pressures (land use, urbanization and hydroclimatic impacts). This method was applied to the Vilaine's watershed, the largest river basin in Brittany, western France, and one which is under agricultural and urban pressure. A complementary research using a UV index was proposed for the evaluation of spatial and temporal variations of water quality. This approach may be considered as a useful and relevant tool to quickly assess the variation of water quality and the main explanatory factors. It also points out monitoring stations under specific stressors considered as outliers regarding UV parameters. Finally, PCA and UV index give complementary results. PCA allows factors influencing drinking water resource to be highlighted and the UV index allows global water quality under specific times and impacts to be reflected.
Water Science and Technology: Water Supply

hal-00878159
https://hal.archives-ouvertes.fr/hal-00878159
DOI : 10.2166/ws.2012.047

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
INTRODUCTION: In order to study social health inequalities, contextual (or ecologic) data may constitute an appropriate alternative to individual socioeconomic characteristics. Indices can be used to summarize the multiple dimensions of the neighborhood socioeconomic status. This work proposes a statistical procedure to create a neighborhood socioeconomic index. METHODS: The study setting is composed of three French urban areas. Socioeconomic data at the census block scale come from the 1999 census. Successive principal components analyses are used to select variables and create the index. Both metropolitan area-specific and global indices are tested and compared. Socioeconomic categories are drawn with hierarchical clustering as a reference to determine "optimal" thresholds able to create categories along a one-dimensional index. RESULTS: Among the twenty variables finally selected in the index, 15 are common to the three metropolitan areas. The index explains at least 57% of the variance of these variables in each metropolitan area, with a contribution of more than 80% of the 15 common variables. CONCLUSIONS: The proposed procedure is statistically justified and robust. It can be applied to multiple geographical areas or socioeconomic variables and provides meaningful information to public health bodies. We highlight the importance of the classification method. We propose an R package in order to use this procedure.
ISSN: 1475-9276

inserm-00809310
http://www.hal.inserm.fr/inserm-00809310
http://www.hal.inserm.fr/inserm-00809310/document
http://www.hal.inserm.fr/inserm-00809310/file/1475-9276-12-21.pdf
DOI : 10.1186/1475-9276-12-21

Éditeur(s) : HAL CCSD Human Kinetics
Résumé : International audience
OBJECTIVE: The aim was to examine the relationship between physical activity pattern and dietary profile. Although some clustering of the variables related to these major determinants of cardiovascular risk has been demonstrated, they have not been extensively studied together. PARTICIPANTS, DESIGN, AND SETTING: Two hundred two female university students from the main Guadeloupe (French West Indies) campus participated. They self-administered a validated Food Frequency Questionnaire and the 1-yr recall Modifiable Activity Questionnaire. Principal-component analysis was performed on the scores and the variables related to the physical activity pattern and dietary profile. RESULTS: A model including 10 variables explained 84.9% of the total variance. The physical activity pattern was not associated with the dietary profile, apart from fruit intake. The physical activity level was homogeneously low (median 1.58, first and last quartile cutoffs 1.54 and 1.66, respectively). There was no correlation between the physical activity level and the Food Frequency Questionnaire score (r=-.005). CONCLUSIONS: The absence of a strong relationship between the food and physical activity profiles is interpreted as a possible reflection of a dysregulation of the quality of food intake in this population with a sedentary lifestyle.
ISSN: 1526-484X

hal-00748203
https://hal.archives-ouvertes.fr/hal-00748203
DOI : 10.1123/ijsnem.20.5.401
PUBMED : 20975108

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
We studied the diversity within the former genus Gymnangium in the South West IndianOcean by using an integrative approach of both traditional (morphology-based) and modernmolecular taxonomy. Nine species were recorded in the material collected. A total of 97 16Smitochondrial DNA sequences and 54 Calmodulin nuclear sequences from eight Gymnangium/Taxella species were analyzed. We found both morphological and molecular differencesin the studied Gymnangium species that make it necessary to split the genus. It isproposed to revalidate the genus Taxella which is currently regarded as a synonym ofGymnangium. Two species of the genus Taxella (T. eximia and T. gracilicaulis), until nowregarded as distinct species based on morphological characteristics, cluster together in onephylogenetic clade. Possible explanations are discussed. Two species from Madagascarnew to science are herein described and rare species from the Indian Ocean islands are redescribed.
ISSN: 1932-6203

hal-01564043
https://hal-univ-perp.archives-ouvertes.fr/hal-01564043
DOI : 10.1371/journal.pone.0174244

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
The elucidation of relationships between biodiversity and ecosystem processes has been limited by the definition of metrics of biodiversity and their integration into experimental design. Functional trait screening can strengthen the performance of these designs.* We suggest the use of Rao's quadratic entropy to measure both functional diversity and phylogenetic diversity of species mixtures proposed for an experimental design, and demonstrate how they can provide complementary information.* We also present an index assessing the statistical performance of these independent variables in different experimental designs. Measurement of independent variables as continuous vs. discrete variables reduces statistical performance, but improves the model by quantifying species differences masked by group assignments.* To illustrate these advances, we present an example from a tropical forest tree community in which we screened 38 species for nine functional traits. The proposed TropiDEP design is based on the relative orthogonality of two multivariate trait axes defined using principal component analysis.* We propose that independent variables describing functional diversity might be grouped to calculate independent variables describing suites of different traits with potentially different effects on particular ecosystem processes. In other systems these axes may differ from those reported here, yet the methods of analysis integrating functional and phylogenetic diversity into experimental design could be universal.
La compréhension des relations pouvant exister entre biodiversité et fonctionnement des écosystèmes a été longtemps limitée par la définition de méthodes de quantification de la diversité biologique et la mise en œuvre de dispositifs expérimentaux permettant sa mesure. L'identification de syndromes de traits fonctionnels clefs influençant des fonctions écosystémiques particulières peut renforcer la performance de ces dispositifs.* Nous suggérons l'utilisation de l'entropie quadratique de Rao pour mesurer la diversité fonctionnelle et phylogénétique dans des assemblages synthétiques d'espèces, et montrons comment ces mesures de diversité sont complémentaires.* Nous présentons également un indice permettant de tester la performance statistique de ces variables indépendantes dans différents modèles expérimentaux. L'utilisation de variables indépendantes continues plutôt que discrètes réduit la performance statistique mais améliore le modèle en quantifiant les différences fonctionnelles entre espèces; différences généralement masquées lors de leur assignation en groupes fonctionnels.* Pour illustrer ces avancées, nous présentons un exemple d'assemblages synthétiques à partir de 38 espèces d'arbres de forêt tropicale sélectionnées pour 9 traits fonctionnels (TropiDEP). Le plan d'expérience de TropiDEP est basé sur l'orthogonalité relative de deux axes multivariés de traits fonctionnels définis par analyse en composantes principales.* Nous proposons que les variables décrivant la diversité fonctionnelle soient groupées pour calculer des variables indépendantes, divisées en plusieurs axes décrivant des combinaisons de différents traits pouvant influencer des processus différents de l'écosystème (e.g. processus du N et du C). Dans d'autres systèmes, ces axes peuvent différer de ceux présentés ici, mais les méthodes d'analyse peuvent être universelles.
ISSN: 1286-4560

Droits : info:eu-repo/semantics/OpenAccess
hal-00883621
https://hal.archives-ouvertes.fr/hal-00883621
https://hal.archives-ouvertes.fr/hal-00883621/document
https://hal.archives-ouvertes.fr/hal-00883621/file/hal-00883621.pdf
DOI : 10.1051/forest/2009110

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: The evaluation of geographical healthcare accessibility in residential areas provides crucial information to public policy. Traditional methods - such as Physician Population Ratios (PPR) or shortest travel time - offer only a one-dimensional view of accessibility. This paper developed an improved indicator: the Index of Spatial Accessibility (ISA) to measure geographical healthcare accessibility at the smallest available infra-urban level, that is, the Ilot Regroupe pour des Indicateurs Statistiques. Methods: This study was carried out in the department of Nord, France. Healthcare professionals are geolocalized using postal addresses available on the French state health insurance website. ISA is derived from an Enhanced Two-Step Floating Catchment Area (E2FCA). We have constructed a catchment for each healthcare provider, by taking into account residential building centroids, car travel time as calculated by Google Maps and the edge effect. Principal Component Analyses (PCA) were used to build a composite ISA to describe the global accessibility of different kinds of health professionals. Results: We applied our method to studying geographical healthcare accessibility for pregnant women, by selecting three types of healthcare provider: general practitioners, gynecologists and midwives. A total of 3587 healthcare providers are potentially able to provide care for inhabitants of the department of Nord. On average there are 92 general practitioners, 22 midwives and 21 gynecologists per 100,000 residents. The composite ISA for the three types of healthcare provider is 39 per 100,000 residents. A comparative analysis between ISA and physician-population ratios indicates that ISA represents a more even distribution whereas the physician-population ratios show an 'all-or-nothing' approach. Conclusion: ISA is a multidimensional and improved measure, which combines the volume of services relative to population size with the proximity of services relative to the population's location, available at the smallest feasible geographical scale. It could guide policy makers towards highlighting critical areas in need of more healthcare providers, and these areas should be earmarked for further knowledge-based policy making.
ISSN: 1475-9276

hal-01359567
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01359567
DOI : 10.1186/s12939-016-0411-z
PUBMED : 27485740

Éditeur(s) : HAL CCSD
Résumé : National audience
We propose a method to solve the problem of clustering individuals described by mixed variables structured in blocks. It is a hierarchical method with two levels similar to Hierarchical Principal Component Analysis presented by Wold, based on the mixed topology maps (MTM). The first step consists in establishing, for each block of mixed variables, a clustering representing a synthesis of local individuals at the block level. The second step is to re-apply MTM on the weighted results of the first level. We obtain a global clustering of individuals, consensus among the partitions from level 1. The proposed method is illustrated on data from the national survey in the French housing stock carried out in 2003-2005 by the Observatory for Indoor Air Quality (OQAI).
Fouille de Données Complexes, complexité liée aux données multiples et massives (FDC)
bordeaux, France

hal-00748841
https://hal.archives-ouvertes.fr/hal-00748841
https://hal.archives-ouvertes.fr/hal-00748841/document