Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We have inferred the deformation mechanisms of antigorite by high-resolution EBSD mapping of samples from Cerro del Almirez ultramafic massif (Betic Cordillera, SE Spain). Textural relations and phase diagram calculations constrain the foliation development conditions to the subduction prograde path at up to 600-630 °C and 1.6-1.9 GPa. Deformation was followed by static annealing of antigorite at ca. 680 °C. The Crystal Preferred Orientation (CPO) of antigorite is characterised by a strong alignment of (001) poles normal to the foliation plane and a weaker, but clear, parallelism between [100] axes and the macroscopic lineation defined by the elongation of magnetite aggregates. Analysis of misorientations across subgrains shows predominance of [010] rotation axis, consistent with activation of the [100](001) slip system. However, tilt subgrain boundaries subparallel to (100), probably formed by edge dislocations of this system, are subsidiary. Most subgrain boundaries are subparallel to (001) planes. They are interpreted as (001) twins wherein continuing viscoplastic deformation resulted in a slight increase of the misorientation between the twins. Modelling of the evolution of the antigorite CPO using a lower bound approach and considering different deformation regimes and sets of basal and non-basal slip systems has shown that intensities of [100] and [010] maxima reflect the relative strength of the antigorite [100](001) and [010](001) systems. Activation of other basal or non-basal slip systems does not change significantly the CPO patterns, but results in less concentrated CPO. 3D transpression models better reproduce the CPO of natural antigorite serpentinites. We propose that the widespread occurrence of strong CPO in high-pressure antigorite serpentinite is consistent with deformation by dislocation creep with dominant glide on [hk0](001), together with the activation of twinning, implying that a power law rheology would better account for the mechanical behaviour of antigorite serpentinite deep in the subduction channel and mantle wedge.
ISSN: 0012-821X

hal-00795511
https://hal.archives-ouvertes.fr/hal-00795511
DOI : 10.1016/j.epsl.2012.06.049

Éditeur(s) : HAL CCSD Elsevier
Résumé : A combination of statistical studies on present-day subduction zones and three-dimensional (3D) laboratory models is performed with the aim to clarify the way that plate kinematics control the geometry of the slab and the overriding plate deformation in subduction zones. In 3D laboratory models, the analogue of a two layer linearly viscous lithosphere–upper mantle system is achieved by means of silicon putty glucose syrup tank experiment. The subducting and overriding plate velocities are systematically changed by exploring the variability field of natural plate kinematics. Both statistical and modelling approaches recognize the importance of overriding plate motion on subduction process behavior: (1) trenches migrate at a rate close to the overriding plate motion, but always move slower than the overriding plates. The mechanism at work is a direct consequence of “slab anchoring” opposed by both lithosphere and mantle viscous resistance and is responsible for overriding plate deformation and slab geometry variability. (2) An overriding plate shortens when the overriding plate moves toward the trench and conditions that are favourable for overriding plate extension are created when the overriding plate moves away from the trench. (3) Shallow and steep dips are found if the overriding plate moves toward and away from the trench, respectively.
ISSN: 0012-821X

hal-00406598
https://hal.archives-ouvertes.fr/hal-00406598
DOI : 10.1016/j.epsl.2007.02.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : The Duffy antigen/receptor for chemokine (DARC) is an erythrocyte receptor for malaria parasites (Plasmodium vivax and Plasmodium knowlesi) and for chemokines. In contrast to other chemokine receptors, DARC is a promiscuous receptor that binds chemokines of both CC and CXC classes. The four extracellular domains (ECDs) of DARC are essential for its interaction with chemokines, whilst the first (ECD1) is sufficient for the interaction with malaria erythrocyte-binding protein. In this study, we elaborate and analyze structural models of the DARC. The construction of the 3D models is based on a comparative modeling process and on the use of many procedures to predict transmembrane segments and to detect far homologous proteins with known structures. Threading, ab initio, secondary structure and Protein Blocks approaches are used to build a very large number of models. The conformational exploration of the ECDs is performed with simulated annealing. The second and fourth ECDs are strongly constrained. On the contrary, the ECD1 is highly flexible, but seems composed of three consecutive regions: a small beta-sheet, a linker region and a structured loop. The chosen structural models encompass most of the biochemical features and reflect the known experimental data. They may be used to analyze functional interaction properties.
ISSN: 0006-3002

inserm-00143373
http://www.hal.inserm.fr/inserm-00143373
http://www.hal.inserm.fr/inserm-00143373/document
http://www.hal.inserm.fr/inserm-00143373/file/de_Brevern_BBA_2005.pdf
DOI : 10.1016/j.bbagen.2005.05.016

Éditeur(s) : HAL CCSD
Résumé : In an earlier paper, we developed an efficient incremental unknowns (IU) preconditioner for solving the two-dimensional (2D) Helmholtz problem in both high and low frequency (wavenumber) regimes. The multilevel preconditioning scheme involves separation of each grid into a coarser grid of the following level and a complementary grid on which the IUs are defined by interpolation. This approach is efficient as long as the mesh size of the coarsest grid is sufficiently small compared to the wavelength. In order to overcome this restriction, the authors introduced recently a modified IU method combining the conventional interpolation with the Helmholtz equation based interpolation (EBI). The EBI coefficients are derived numerically using a sufficiently large set of analytic solutions of the Helmholtz equation on a special hierarchy of stencils. The modified IUs using Helmholtz EBI are shown to provide improved preconditioning on the coarse scales where the conventional interpolation can not be employed. This study deals with the extension of this idea for solving the three-dimensional (3D) Helmholtz equation.
https://hal.univ-antilles.fr/hal-00763930

Droits : info:eu-repo/semantics/OpenAccess
hal-00763930
https://hal.univ-antilles.fr/hal-00763930
https://hal.univ-antilles.fr/hal-00763930/document
https://hal.univ-antilles.fr/hal-00763930/file/eci3D_3d.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : The Gulf of Aigues-Mortes (NW Mediterranean Sea) is a midshelf zone whose scale is an intermediate between the nearshore scale (0–10 m depth) and the coastal scale (including the whole continental shelf). Its hydrodynamics is investigated for the first time. ADCP, CTD and thermosalinograph data were collected during three short cruises (HYGAM; March 6–7, 20–21, April 5–6, 2005). They were scheduled approximately every 15 days to sample the gulf circulation under different weather conditions. Moreover, the cruise data were used to validate the Symphonie model, a 3D primitive equations circulation model. The circulation features displayed by in situ data were well reproduced by Symphonie. A downscaling modelling approach was implemented, the largest scale being obtained by the replay of the MFSTEP regional model of the North-Western Mediterranean Sea. The analysis, closely coupling in situ measurements and model results, provides information that would not have been obtained using data separately. The great variability of the oceanic circulation at this scale is well evidenced. Winds are the main forces, not only locally but also at a larger scale. North winds generate coherent structures interacting with the general Mediterranean circulation. The explanation of the induced currents is then not straightforward, some of them being, for example, northward. South and southeast winds reinforce the sloping surface, the latter allowing the geostrophic equilibrium with longshore currents. This study, focused on the end of winter 2004–2005, also enhances the heat fluxes from offshore to nearshore, as well as the initiation of shelf dense waters. The knowledge of the midshelf oceanic circulation is then applied to run a numerical experiment which describes both the dispersion of a fictive contaminant from a point S (at the centre of the GAM), and evaluates the risk of contamination of the beaches along the GAM shores.
ISSN: 0278-4343

hal-00196620
https://hal.archives-ouvertes.fr/hal-00196620
DOI : 10.1016/j.csr.2007.06.006

Éditeur(s) : HAL CCSD
Résumé : Gravitropism is a major process in vertical growth as it allows the positioning of plant in the gravity field and thus, for trees, it takes part in the light foraging strategies. Without any gravitropism, trees would adopt a weeping habit or fall on the ground due to the increasing with growth supported weight, especially at the advance regeneration stage (sapling stage) in the understorey, where tree are very slender and poorly stiff. Most of the gravitropic studies are made by physiologists in order to understand the process and thus are associated to complex laboratory methods (genetic engineering, anatomical studies, accurate 2D ou 3D measurements of form changes with time). In order to study the ecological relevance and the specific diversity of gravitropic performances in natural forests, we developed a framework that uses different kinds of datas. Synchronical analysis has been done i) at the population level in large sample of trees and ii) at the tree level from destructive measurement of the dissymmetry maturation strains known to be the main motor of the posture control reaction of trees. In both cases, biomechanical models allows to estimate some aspects of the dynamic gravitropic process. Diachronical analysis has been done in natural conditions on permanent plots, or in a more traditional way, by observing in greenhouse experiments the righting movements of plants artificially tilted. In the first case, the problem is the high variability of natural disturbances and the slowness of growth and movements in the dark understorey. The second choice allows a measurement of a capacity (i.e. the ability of the species to react in quite extreme conditions of verticality disturbance but good for growth light and nutrient conditions) that is more easy to analyse, but is maybe not so relevant for estimating the ecological strategy (some species could have developed a high efficience of gravitropic reaction in natural conditions by avoiding the mechanical disturbance or adapting the reaction to slow growth and changing environments in natural conditions). All approaches use the same basic biomechanical modelling, i) to analyse simultaneously the reaction and the disturbance (due to the weight increase) during growth, or ii) to combine different parameters (geometry, growth, weight, maturation strains) involved in shape changes and posture control. They give a classification of the species according to their gravitropic performances. Results on 15 species are discussed, with relation to shade-tolerance or avoidance.
6th Plant Biomechanics Conference
Cayenne, France

hal-00565956
https://hal.archives-ouvertes.fr/hal-00565956

Éditeur(s) : HAL CCSD IEEE
Résumé : International audience
The main challenge in prostate cancer radiotherapy is to deliver the prescribed dose to the clinical target while minimizing the dose to the neighboring organs at risk and thus avoiding subsequent toxicity-related events. With the aim of improving toxicity prediction following prostate cancer radiotherapy, the goal of our work is to propose a new predictive variable computed with independent component analysis to predict late rectal toxicity, and to compare its performance to other models (logistic regression, normal tissue complication probability model and recent principal component analysis approach). Clinical data and dose-volume histograms were collected from 216 patients having received 3D conformal radiation for prostate cancer with at least two years of follow-up. Independent component analysis was trained to predict the risk of 3-year rectal bleeding Grade extgreater= 2. The performance of all the models was assessed by computing the area under the receiving operating characteristic curve. Clinical parameters combined with the new variable were found to be predictors of rectal bleeding. The mean area under the receiving operating curve for our proposed approach was 0:75. The AUC values for the logistic regression, the Lyman-Kutcher-Burman model and the recent principal component analysis approach were 0:62, 0:53 and 0:62, respectively. Our proposed new variable may be an useful new tool in predicting late rectal toxicity. It appears as a strong predictive variable to improve classical models
2015 37th annual international conference of the IEEE Engineering in Medicine and Biology Society
Milan, Italy

hal-01304750
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01304750

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
A NE-SW magnetotelluric 110 km-long profile including 18 sites was acquired across the western Rif Cordillera along the Eurasian-African plate boundary, allowing to constrain its poorly known deep structure. It extends from the Internal Zones, close to the Alboran coast, crossing the External Zones and up to the Gharb foreland basin. The periods recorded range from 0.001 s to 1000 s. The combination of magnetotelluric data with available geological data provides new insight regarding the relationship between deep and shallow crustal structures of the Rif Cordillera. Analyses of structural dimensionality suggest a preferential NW-SE direction, and a 2D joint inversion was performed. A 3D inversion extending the 2D model along the strike confirmed the reliability of this approach. The magnetotelluric model shows a heterogeneous upper crust in agreement with the geological structures observed at surface. The Internal Zones correspond to resistive (metamorphic rocks) and conductive (peridotites) bodies, while the External Zones and the foreland basin are characterized by large conductive bodies of variable thickness. A crustal detachment level separating shallow geological units from a probable variscan basement was inferred. At depth, the most relevant feature consists of large resistive bodies with a shallow irregular top, located below the frontal part of the Rif. The outcrops of exotic metapelitic, granitic and gneissic blocks in the frontal part of the Cordillera suggest that these large resistive bodies may correspond to a gneissic or granitic basement surrounded by metapelitic rocks. Late contractive thrust and diapiric processes were responsible for their uplift and shallow emplacement. The Rif constitutes an active southwestward vergent orogenic wedge, oblique to the present-day NW-SE convergent Eurasian-African plate boundary.
ISSN: 1525-2027

hal-00670999
https://hal.archives-ouvertes.fr/hal-00670999
DOI : 10.1029/2011GC003783