Éditeur(s) : Elsevier Science Bv
Résumé : Small-scale fisheries have traditionally received less research effort than large-scale fisheries and are generally under-studied in Europe. In spite of their comparatively low volume of catches and economic importance, small-scale fisheries are socially important and an integral part of the European coastal zone. Considering the high heterogeneity of situations and the paucity of quantitative data, we used an analytical methodology based on the comparative method. We carried out an analysis of small-scale fisheries (SSFs) in Europe based on a selection of nine case studies. Our objective was to obtain a comprehensive description of small-scale fleets covering different areas/fisheries/species, encompassing the diversity and specific conditions under which SSFs operate, in order to demonstrate the ecological and social sustainability of this often overlooked fisheries segment. A common approach formulated so that the case studies could be compared with the case histories of other competing users, required that for each set of criteria – technical, biological, socio-economic, and institutional – a set of relevant items and indicators was established. An analysis of characteristics common to the selected case studies is conducted and an attempt made to extend our comparisons to the whole of the European Union. Our results show that (as compared with large-scale fleets, their main competitor) small-scale fleets: (i) are composed of smaller vessels and, consequently, travel lower distances to fishing grounds, and are more reliant on coastal areas; (ii) have smaller crews (although the global employment figure is similar to that of large-scale fleets in Europe); (iii) use mostly, but not exclusively, passive gears; (iv) use multi-purpose fishing approaches, and can change the fish species they target during the year; (v) have lower extraction rates; (vi) have lower total capital investments (including fishing rights), turnover and costs; and (vii) have lower fuel consumption, making them less sensitive to changing oil prices. Dependence on subsidies is lower (viii). Involvement in fisheries management is variable, conservation and access regulation measures are largely local in origin. For the selected case studies, the most significant competitors are large-scale fleets, and recreational fisheries, but other sources of interaction (water quality, invasive species, etc.) cannot be ignored.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2013-02 , Vol. 140 , P. 1-13

Droits : 2012 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00118/22934/20757.pdf
DOI:10.1016/j.fishres.2012.11.008
http://archimer.ifremer.fr/doc/00118/22934/

Éditeur(s) : HAL CCSD Ecoscience
Résumé : International audience
Hymenoptera pollinators and figs (ripe or unripe) of Ficus vallis-choudae are protected from the predatory activity of myrmicine ants (Atopomyrmex mocquerisi; Crematogaster clariventris; Cremato gaster sp.) by other ants (Camponotus acvapimensis and Camponotus brutus; Formicinae) who attack neither unripe figs nor the pollinator. On trees occupied by Atopomyrmex and Crematogaster, and on trees invaded by columns of workers after recruitment by scouts, the predatory activity begins when the fig wasps emerge. Then, the ants attack unripe figs (asynchronization in ripeness), destroying whole figs of certain trees. The male function of the trees through pollen dispersal by fig wasps is, therefore, severely reduced, while the female function (seed dispersal) is affected only on unripe figs before fig wasp emergence. We recorded 13 ant species on the 73 Ficus vallis-choudae of the Batchenga savanna (Cameroon) studied, but only the five previously cited species were able to occupy an entire fig tree. The three Myrmicinae which have a status of dominant (large colony size; strong territoriality vis-à-vis other dominant species; can tolerate non-dominant species) tended scale insects. Both Camponotus species (and the eight other ant species) are non-dominant (small colony size), but are able to occupy a whole tree under certain conditions (here, when they tend the tettigometrid Hilda undata) and to be territorial. Their status corresponds, therefore, to that of sub-dominant. Tests of aggressiveness showed that each ant species is aggressive towards alien conspecifics. C. brutus individuals were tolerated on fig trees occupied by Atopomyrmex mocquerisi or by Crematogaster clariventris, while workers of both latter species, who do not tolerate one another, were not tolerated on fig trees occupied by C. brutus. In this situation, the cost-benefit for the trees depends on the ant species that occupies their foliage; C. brutus, when tending tettigometrids, is advantageous. There is, therefore, an indirect influence of the tettigometrids on the production of fig pollinating wasps and seeds. Chez Ficus vallis-choudae, les figues, matures ou non, et leurs hyménoptères pollinisateurs sont protégés de l'activité prédatice de la part de trois espèces de fourmis Myrmicinae (Atopomyrmex mocquerisi; Crematogaster clariventris; Crematogaster sp.) par d'autres fourmis (Camponotus acvapimensis et Camponotus brutus; Formicinae) qui, elles, ne s'attaquent ni aux figues non matures, ni aux pollinisateurs. L'action prédatrice des Atopomyrmex et des Crematogaster débute à l'émergence des pollinisateurs et sétend sur des figuiers qu'elles n'occupent pas grâce à la formation de colonnes recrutées par des ouvrières éclaireuses. Ensuite, elles attaquent les figues moins mûres (asynchronie dans la maturation), toutes les figues d'un arbre pouvant être détruites. La fonction mâle de l'arbre est donc sévèrement réduite via la prédation des pollinisateurs. La fonction femelle est moins affectée, les figues, au moment de l'émergence des pollinisateurs ayant des graines matures. Nous avons recensé 13 espèces de fourmis sur les 73 Ficus vallis-choudae étudiés dans la savane de Batchenga (Cameroun), mais uniquement les cinq espèces citées ci-haut peuvent occuper un figuier entier. Les trois Myrmicinae sont des « dominantes » (grosses colonies; forte territorialité contre les autres dominantes; peuvent tolérer des « non-dominantes » ) qui exploitent des cochenilles. Les deux Camponotus (ainsi que les huit autres espèces) appartiennent au lot des « non-dominantes » (petites colonies), mais dans certaines situations (ici, lorsqu'elles exploitent le Tettigometridae Hilda undata) elles peuvent aussi occuper un arbre entier et en défendre l'accès. On les qualifie alors de « sub-dominantes » . Des tests d'agressivité ont permis de montrer que chaque espèce est agressive vis-à-vis d'ouvrières étrangères conspécifiques, que les ouvrières de Camponotus brutus sont tolérées sur les figuiers occupés par Atopomyr ex mocquerisi ou par Crematogaster clariventris, alors que les ouvrières de ces deux espèces, qui ne se tolèrent pas entre elles, ne sont pas tolérées sur les figuiers occupés par Camponotus brutus. Dans ces conditions, le rapport coût/bénéfice pour l'arbre dépend de l'espèce de fourmi qui l'occupe, Camponotus brutus étant l'espèce avantageuse, grâce à l'exploitation des tettigomètres. En conséquence, il y a une influence indirecte du tettitogomètre sur la production d'insectes pollinasiteurs et de graines.
ISSN: 1195-6860

hal-01214443
https://hal.archives-ouvertes.fr/hal-01214443
DOI : 10.2307/42902390

Éditeur(s) : HAL CCSD
Résumé : The mosquito species Aedes (Stegomyia) aegypti (Linnaeus 1762) was introduced into the Americas some 400 years ago from the African continent. Currently, this species is the primary agent behind dengue and chikungunya outbreaks in the pan-tropical area and its widespread distribution has likely played an important role in the recent expansion of the Zika virus. The biology of Ae. (Stg.) aegypti is particularly well known, which is not the case for its ecology. By adopting a cross-disciplinary approach I attempted to understand the relative contribution of biotic and abiotic factors as well as some evolutionary processes in the distribution of this species at the local and regional scales in French Guiana.Initially, I was interested in revising the core knowledge concerning the diversity of mosquitoes in French Guiana. By combining traditional and molecular taxonomy, this step allowed my colleagues and I to discover several new species and to create the appropriate tools to manage this type of entomological data.Secondly, we studied the spatio-temporal structure of resident aquatic macroinvertebrate communities in urban areas. This highlighted the existence of antagonistic and mutualistic interactions. In particular, the native mosquito Limatus durhamii Theobald 1901 appears to prevent the sustainable establishment of Ae. (Stg.) aegypti in slightly urbanized environments via a mechanism of competitive exclusion.
Le moustique Aedes (Stegomyia) aegypti (Linnaeus 1762) a été introduit dans les Amériques depuis le continent africain il y a environ 400 ans. Actuellement, cette espèce est la principale responsable des épidémies de dengue et de chikungunya dans la zone pantropicale et sa large répartition a très probablement joué un rôle important dans l’expansion récente du virus Zika. La biologie d’Ae. (Stg.) aegypti est particulièrement bien connue, ce qui n’est pas le cas de son écologie, en particulier de ses interactions avec les communautés résidentes. En adoptant une démarche pluridisciplinaire je me suis intéressé à la contribution relative des facteurs biotiques et abiotiques ainsi que de certains processus évolutifs dans la distribution de cette espèce à différentes échelles en Guyane française.Dans un premier temps j’ai participé à la révision des connaissances fondamentales sur la diversité des moustiques de Guyane. En alliant la taxonomie classique et moléculaire, cette étape a permis de découvrir plusieurs nouvelles espèces et de mettre en place des outils adaptés à la gestion de ce type de données, notamment pour une utilisation future.Dans un second temps la structuration spatio-temporelle des communautés résidentes de macro-invertébrés aquatiques a été étudiée en milieu urbain. Cela a permis de mettre en évidence l’existence d’interactions antagonistes et mutualistes avec les taxons des communautés résidentes. En particulier, le moustique autochtone Limatus durhamii Theobald 1901 semble empêcher l’établissement durable d’Ae. (Stg.) aegypti dans les milieux faiblement urbanisés via un mécanisme d’exclusion compétitive.
https://tel.archives-ouvertes.fr/tel-01405425

NNT : 2016YANE0001
tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425/document
https://tel.archives-ouvertes.fr/tel-01405425/file/These_Def_Talaga.pdf

Éditeur(s) : HAL CCSD American Medical Association (AMA)
Résumé : International audience
IMPORTANCE Although frequently used in treating intensive care unit (ICU) patients with sepsis, empirical antifungal therapy, initiated for suspected fungal infection, has not been shown to improve outcome. OBJECTIVE To determine whether empirical micafungin reduces invasive fungal infection (IFI)-free survival at day 28. DESIGN, SETTING, AND PARTICIPANTS Multicenter double-blind placebo-controlled study of 260 nonneutropenic, nontransplanted, critically ill patients with ICU-acquired sepsis, multiple Candida colonization, multiple organ failure, exposed to broad-spectrum antibacterial agents, and enrolled between July 2012 and February 2015 in 19 French ICUs. INTERVENTIONS Empirical treatment with micafungin (100mg, once daily, for 14 days) (n = 131) vs placebo (n = 129). MAIN OUTCOMES AND MEASURES The primary end pointwas survival without proven IFI 28 days after randomization. Key secondary end points included new proven fungal infections, survival at day 28 and day 90, organ failure, serum (1-3)-beta-D-glucan level evolution, and incidence of ventilator-associated bacterial pneumonia. RESULTS Among 260 patients (mean age 63 years; 91 [35%] women), 251 (128, micafungin group; 123, placebo group) were included in the modified intent-to-treat analysis. Median values were 8 for Sequential Organ Failure Assessment (SOFA) score, 3 for number of Candida-colonized sites, and 99 pg/mL for level of (1-3)-beta-D-glucan. On day 28, there were 82 (68%) patients in the micafungin group vs 79 (60.2%) in the placebo group who were alive and IFI free (hazard ratio [HR], 1.35 [95% CI, 0.87-2.08]). Results were similar among patients with a (1-3)-beta-D-glucan level of greater than 80 pg/mL (n = 175; HR, 1.41 [95% CI, 0.85-2.33]). Day-28 IFI-free survival in patients with a high SOFA score (> 8) was not significantly different when compared between the micafungin vs placebo groups (HR, 1.69 [95% CI, 0.96-2.94]). Use of empirical micafungin decreased the rate of new invasive fungal infection in 4 of 128 patients (3%) in the micafungin group vs placebo (15/123 patients [12%]) (P =.008). CONCLUSIONS AND RELEVANCE Among nonneutropenic critically ill patients with ICU-acquired sepsis, Candida species colonization at multiple sites, and multiple organ failure, empirical treatment with micafungin, compared with placebo, did not increase fungal infection-free survival at day 28.
ISSN: 0098-7484

hal-01405822
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01405822
DOI : 10.1001/jama.2016.14655
PUBMED : 27706483

Résumé : This paper aims to establish a comprehensive Iist of exotic species introduced into Atlantic French waters over the last century as well as their origin, and the vectors involved in the process. At least 104 non indigenous species have been recorded in the Atlantic and Channel coastal wa• ters. Among those species, only a few (Bonamia ostreae, Crepidula fornicata) have resulted in highly significant negative impacts and side-effects on the coastal activity. In contrast, the introduction of the Japanese oyster Crassostrea gigas can be considered to be successful, sustaining a large industry counting more than 4,000 companies and 150,000 tons of yearly production. Over the last decade, French and European laws have strenghtened the controls over exotic species introductions, limiting their impacts. These new regulations and increased awareness from the scientific community with regard to coastal industry and biodiversity have reduced significantly the cases of deliberate introduction, while the risk analysis requirement has improved the overall management. However, in spite of these improvements, cases remain significant, mostly by accidental and/or increased vectors of introduction such as the ballast waters and sediment. Moreover, global changes should now be considered as a major issue, Iikely inducing future geographic distribution changes over a large European coastal range. Understanding the invasion population dynamics for exotic species remains a challenging research issue currently addressed by the French INVABIO multidisciplinary program.
Invasive aquatic species of Europe. Distribution, impacts and management. E. Leppäkoski, S. Gollasch & S. Olernin (eds).

Droits : 2002 Kluwer Academie Publishers. Printed in the Netherlands.
https://w3.ifremer.fr/archimer/doc/00000/3100/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This paper describes an operational protocol for integrating conservation and restoration with land-use planning in islands. Conservation challenges are intensified in insular systems due to higher ecosystem vulnerability, limited spatial options, low data availability, rapid land-use change and, globally, short-term vision planning. Our operational planning protocol integrates ecological and socio-economic factors to identify the best spatial options for conserving and restoring biodiversity, inside and outside extant reserves, while minimising future land-use conflicts. Conservation and restoration targets are formulated for species, habitats and ecological processes that support biodiversity. An optimal network of priority sites is selected to achieve those targets across the landscape. The prioritisation process integrates a Conservation Costs Index to optimise conservation and restoration investments. We discuss the outcomes of the planning protocol in terms of site prioritisation, stakeholders' participation and general implications for spatial planning in insular systems. As with many islands, the study area of Réunion Island has experienced rapid urban and agricultural expansion, which threatens its unique biodiversity. Forty three per cent of the island is currently protected in a National Park but only half of this reserve network contributes to the achievement of targets. An additional 21% of land should be conserved mainly to ensure the persistence of ecological connections between the marine, terrestrial and freshwater realms. Finally we emphasize that our method doesn't substitute the land-use planning debate but is aimed to better prepare the conservation sector for negotiating future land-use allocation with other socio-economic sectors in islands
Landscape and Urban Planning

halsde-00676425
https://hal.archives-ouvertes.fr/halsde-00676425
DOI : 10.1016/j.landurbplan.2011.02.004

Éditeur(s) : Cambridge Univ Press
Résumé : Integrated Multi-Trophic Aquaculture takes advantage of the mutualism between some detritivorous fish and phytoplankton. The fish recycle nutrients by consuming live (and dead) algae and provide the inorganic carbon to fuel the growth of live algae. In the meanwhile, algae purify the water and generate the oxygen required by fishes. Such mechanism stabilizes the functioning of an artificially recycling ecosystem, as exemplified by combining the euryhaline tilapia Sarotherodon melanotheron heudelotii and the unicellular alga Chlorella sp. Feed addition in this ecosystem results in faster fish growth but also in an increase in phytoplankton biomass, which must be limited. In the prototype described here, the algal population control is exerted by herbivorous zooplankton growing in a separate pond connected in parallel to the fish-algae ecosystem. The zooplankton production is then consumed by tilapia, particularly by the fry and juveniles, when water is returned to the main circuit. Chlorella sp. and Brachionus plicatilis are two planktonic species that have spontaneously colonized the brackish water of the prototype, which was set-up in Senegal along the Atlantic Ocean shoreline. In our system, water was entirely recycled and only evaporation was compensated (1.5% volume/day). Sediment, which accumulated in the zooplankton pond, was the only trophic cul-de-sac. The system was temporarily destabilized following an accidental rotifer invasion in the main circuit. This caused Chlorella disappearance and replacement by opportunist algae, not consumed by Brachionus. Following the entire consumption of the Brachionus population by tilapias, Chlorella predominated again. Our artificial ecosystem combining S. m. heudelotii, Chlorella and B. plicatilis thus appeared to be resilient. This farming system was operated over one year with a fish productivity of 1.85 kg/m(2) per year during the cold season (January to April).
Animal (1751-7311) (Cambridge Univ Press), 2013-02 , Vol. 7 , N. 2 , P. 322-329

Droits : The Animal Consortium 2012
http://archimer.ifremer.fr/doc/00118/22955/20945.pdf
DOI:10.1017/S1751731112001279
http://archimer.ifremer.fr/doc/00118/22955/

Éditeur(s) : Elsevier Sci Ltd
Résumé : Time-series studies have reported trophic cascades in land, freshwater and marine environments in many geographic areas. However, the spatial extent of habitats, a key metric of ecosystem structure, has not been mapped in these studies. Marine reserves can provide experimental, before-after and inside-outside (control-impacted), situations for assessing the impact of fishing on ecosystems. We mapped seabed habitats and their associated communities (biotopes) in New Zealand's oldest marine reserve for comparison with pre-reserve maps created about 30 years previously. Areas grazed bare by sea urchins were entirely replaced in the centre of the reserve by kelp, or alga turf, an intermediate biotope between heavily grazed encrusting algae and lightly grazed kelp. Urchins declined following increased abundance and body size of spiny (rock) lobsters and fish (especially snapper) in the reserve but maintained bare rock outside. While this gradient in habitat change matched the gradient of predator abundance, it also matched the extent of reef habitat area. Thus the trophic cascade may be influenced by the effect of habitat on the abundance and behavioural interactions of urchins and their predators. Further ecosystem changes may arise should the abundance of mega-predators, such as seals, cetaceans and large sharks, increase in the region; if parasites become pathogenic; and/or when invasive species reach the reserve. No-take marine reserves provide real-world experiments that show the importance of species in food webs, and the consequences of fishing for ecosystems. Because these changes in ecosystem structure may continue, and will vary with environment, climate and species distributions, reserves need to be permanent and replicated geographically. Habitat maps should be produced for all reserves to enable ecological changes in the ecosystem to be spatially quantified. (C) 2012 Elsevier Ltd. All rights reserved.
Biological Conservation (0006-3207) (Elsevier Sci Ltd), 2012-10 , Vol. 155 , P. 193-201

Droits : 2012 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00107/21842/20067.pdf
DOI:10.1016/j.biocon.2012.05.009
http://archimer.ifremer.fr/doc/00107/21842/

Éditeur(s) : EDP Sciences
Résumé : The degree to which larvae of the invasive American slipper limpet (Crepidula fornicata) and the Japanese oyster (Crassostrea gigas) may compete for food was examined during 2003 in the laboratory. Larval microalgae uptake, growth and mortality were compared for larvae fed each of six species of unicellular algae, ranging in length from 2 to 10 mu m. Tested diets included the two flagellates Tetraselmis chui (Prasinophyceae) and Isochrysis affinis galbana (T-ISO, Haptophyceae), one member of the Chlorophyceae (Nannochloris atomus), and three diatom species (Chaetoceros calcitrans forma pumilum, Chaetoceros gracilis, Skeletonema marino). We found that the limpet larvae ingested phytoplankton over a wider range of cell sizes and ate at higher rates on each diet than did the oyster larvae. For example, oyster larvae consumed 2216 cells h(-1) of N. atomus, while limpet larvae consumed the same phytoplankton cells at approximately twice that rate, 5159 cells h(-1), on the same diet. Larvae of both species grew more quickly on a mixture of flagellates than on any of the diatom alone (12 versus 7 mu m d(-1) for oyster larvae and 41 versus 28 mu m d(-1) for limpet larvae). Our results suggest that in the Bay of Mount Saint-Michel (France, Western Channel), where larvae of both species co-exist in the summer, intensive grazing by limpet larvae can potentially deplete phytoplankton concentrations to cause competition with oyster larvae, particularly for smaller sized phytoplankton species.
Compétition trophique chez les larves de mollusques marins Crepidula fornicata et Crassostrea gigas. En 2003, des expérimentations ont été menées en laboratoire pour évaluer la compétition trophique entre les larves de crépidules (Crepidula fornicata) et celles de l'huître japonaise (Crassostrea gigas). Les taux de consommation, de croissance et de mortalité sont comparés, en alimentant les larves de chaque mollusque avec six espèces d'algues unicellulaires, dont la taille varie de 2 à 10 μm, deux flagellées Tetraselmis chui (Prasinophycée) et Isochrysis affinis galbana (T-ISO, Haptophycée), une chlorophycée Nannochloris atomus, et trois diatomées : Chaetoceros calcitrans forma pumilum, Chaetoceros gracilis et Skeletonema marinoï. Contrairement aux larves d'huîtres, les larves de crépidules consomment toutes les cellules phytoplanctoniques quelles que soient leurs tailles, et ceci, à un taux plusélevé que celui des larves d'huîtres. Ainsi, une larve d'huître consomme 2216 cellules h−1 de N. atomus, tandis que la larve de crépidule en consomme 5159 cellules h−1, soit environ deux fois plus. Ces expériences mettent également en évidence que les larves des deux espèces grandissent plus vite quand elles sont nourries avec le mélange des algues flagellées plutôt qu'avec chacune des espèces de ces mêmes algues (12 contre 7 μm j−1 pour l'huître et 41 contre 28 μm j−1 pour la crépidule). Ainsi, en baie du Mont Saint-Michel (Manche ouest) où les larves des deux espèces apparaissent à la même période estivale, nos résultats suggèrent que la filtration des larves de crépidules abaisse notablement la concentration de phytoplancton, et tout spécialement celle des petites cellules algales, entraînant alors une compétition trophique avec les larves d'huîtres.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2008-04 , Vol. 21 , N. 2 , P. 197-205

Droits : EDP Sciences, IFREMER, IRD 2008
http://archimer.ifremer.fr/doc/2008/publication-4703.pdf
DOI:10.1051/alr:2008025
http://archimer.ifremer.fr/doc/00000/4703/

Éditeur(s) : HAL CCSD
Résumé : International audience
Many emerging infectious diseases are caused by generalist pathogens that infect and transmit via multiple host species with multiple dissemination routes, thus confounding the understanding of pathogen transmission pathways from wildlife reservoirs to humans. The emergence of these pathogens in human populations has frequently been associated with global changes, such as socio-economic, climate or biodiversity modifications, by allowing generalist pathogens to invade and persist in new ecological niches, infect new host species, and thus change the nature of transmission pathways. Using the case of Buruli ulcer disease, we review how land-use changes, climatic patterns and biodiversity alterations contribute to disease emergence in many parts of the world. Here we clearly show that Mycobacterium ulcerans is an environmental pathogen characterized by multi-host transmission dynamics and that its infectious pathways to humans rely on the local effects of global environmental changes. We show that the interplay between habitat changes (for example, deforestation and agricultural land-use changes) and climatic patterns (for example, rainfall events), applied in a local context, can lead to abiotic environmental changes and functional changes in local biodiversity that favor the pathogen’s prevalence in the environment and may explain disease emergence.
ISSN: 2222-1751

Droits : http://creativecommons.org/licenses/by/
hal-01528488
http://hal.upmc.fr/hal-01528488
http://hal.upmc.fr/hal-01528488/document
http://hal.upmc.fr/hal-01528488/file/emi20177a.pdf
DOI : 10.1038/emi.2017.7

Éditeur(s) : HAL CCSD
Résumé : International audience
This study assessed the usefulness of UV spectrophotometry for the monitoring of a yeast-based deoxygenation process proposed for ships' ballast water treatment to prevent the transfer of aquatic invasive species. Ten-day laboratory experiments using three treatment concentrations and different water types were conducted and resulted in complete oxygen depletion of treated waters. The treatment performance and quality of treated waters were determined by measuring the UV-visible absorbance spectra of water samples taken over time. Samples were also used for laboratory analysis of water quality properties. The UV absorbance spectra values were strongly correlated (r = 0.96) to yeast cell density in treated waters. The second-order derivative (D (2)) of the spectra varied greatly over time, and the spectrum profiles could be divided into two groups corresponding to the oxygenated and anoxic phases of the treatment. The D (2) value at 215 nm was strongly correlated (r = 0.94) to ammonia levels, which increased over time. The D (2) value at 225 nm was strongly correlated (r  extgreater 0.97) to DO concentration. Our results showed that UV spectrophotometry may provide a rapid assessment of the behavior and performance of the yeast bioreactor over time by quantifying (1) the density of yeast cells, (2) the time at which anoxic conditions were reached, and (3) a water quality index of the treated water related to the production of ammonia. We conclude that the rapidity of the technique confers a solid advantage over standard methods used for water quality analysis in laboratory and would permit the direct monitoring of the treatment performance on-board ships
Environmental Monitoring and Assessment

hal-01286253
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01286253
DOI : 10.1007/s10661-016-5209-3
PUBMED : 26944435

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Characterizing the trophic relationships between large herbivores and the outstanding plant diversity in rainforest is a major challenge because of their elusiveness. This is crucial to understand the role of these herbivores in the functioning of the rainforest ecosystems. We tested a non-invasive approach based on the high-throughput sequencing of environmental samples using small plant plastid sequences (the trnL P6 loop) and ribosomal ITS1 primers, referred to as DNA metabarcoding, to investigate the diet of the largest neotropical herbivore, the lowland tapir. Sequencing was performed on plant DNA extracted from tapir faeces collected at the Nouragues station, a protected area of French Guiana. In spite of a limited sampling, our approach reliably provided information about the lowland tapir's diet at this site. Indeed, 95.1% and 74.4% of the plant families and genera identified thanks to the trnL P6 loop, respectively, matched with taxa already known to be consumed by tapirs. With this approach we were able to show that two families and eight new genera are also consumed by the lowland tapir. The taxonomic resolution of this method is limited to the plant family and genera. Complementary barcodes, such as a small portion of ITS1, can be used to efficiently narrow identifications down to the species in some problematic families. We will discuss the remaining limitations of this approach and how useful it is at this stage to unravel the diet of elusive rainforest herbivores and better understand their role as engineers of the ecosystem.
ISSN: 1932-6203

hal-01190578
https://hal.archives-ouvertes.fr/hal-01190578
PRODINRA : 209109
PUBMED : 23560107
DOI : 10.1371/journal.pone.0060799

Résumé : Les attines sont des fourmis champignonnistes dans la zone allant des Etats-Unis à l'Argentine en passant par la Caraïbe. Les dégâts causés par ces ravageurs sont considérables et estimés à plusieurs millions de dollars par an. Elles sont de ce fait considérées comme l'un des premiers fléaux de l'agriculture de la zone (Cameron & Riggs, 1985 ; Fowler et al., 1986). En Guadeloupe, la "fourmi manioc" (Acromyrmexoctospinosus Reich) cause de nombreux dommages, aussi bien pour l'agriculture que dans les milieux naturels. Les dégâts occasionnés par ces fourmis ont nécessité l'utilisation de pesticides de synthèse. pour tenter de les combattre. La dangerosité de ces substances pour les milieux naturels et anthropisés ainsi que pour la santé publique est un contexte favorable à l'exploration de nouvelles pistes telles que l'utilisation de plantes à usages phytosanitaires. L'objet principal de cette thèse consiste à savoir si on peut déceler à partir de l'ethnopharmacologieTRAMIL des usages permettant de combattre cette fourmi et son symbiote fongique, Leucocoprinuss 'gongylophorus (Heim) MoeIler. Les protocoles retenus et présentés dans ce travail permettent d'observer les effets des usages de plantes choisis sur la survie et le comportement des insects et sur la croissance du symbiote. Ils ont été sélectionnés pour leur potentialité à mettre en évidence les différents types d'effets des extraits végétaux (insecticide par contact, insectifuge, toxique par ingestion, fongistatique ou fongicide). Six usages traditionnels issus de cinq plantes sont testés sur la fourmi: Mammea americana L., Nerium oleander L., Nicotiana tabacum L., Rollinia mucosa (Jacq.) Baill. et Trichilia pallida Sw. Cinq autres usages traditionnels sont testés sur le champignon : Allium cepa L., Allium sativum L., Lycopersicom esculentum Mill., Manihot esculenta Crantz et Senna alata (L.) Roxb. Les resultants obtenus permettent de dégager quelques pistes de lutte intéressantes contre ce ravageur.
Leaf-cutting ants are fungus-growing ants.Their geographie distribution ranges from southern United States to northern Argentina, incIuding the West Indies, Economic losses due to these ants were estimated at several million dollars per year. The latter statement makes they are considered as one of the most important pest species of the agricultural productions (Cameron & Riggs, 1985 ; Fowler et al., 1986). In (Guadeloupe, the most important invasive pest species which caused important losses in forests, gardens and field crops is 'cassava ant' (Acromyrmex octospinosus Reich). These huge losses required to use, synthetic chemical pesticides to control these leaf-cutting ants, the consequence of which is, irreversible' injuries on environment and on human health. As a matter of fact, this situation has prompted an increasing interest in alternative methods for pest control like plants with pesticide used. The main objective of this thesis is to know if traditional ethnopharmacological TRAMIL uses could help to fight against this ant and against the symbiotic fungus, Leucocoprinus gongylophorus (Heim) . Moeller. Methods used and presented in this work aIIowed to observe effects of selected plant uses on mortality and insect's behavior. The protocols performed were selected for their potentiality to detect the different types of insecticidal effects (contact toxicity, repellent effect, toxicity by ingestion, fungicidal or fungistatic). Six traditional plant uses of five plants were tested on the ant : Mammea americana L., Nerium oleander L., Nicotiana tabacum L.,Rollinia mucosa (Jacq) Baill. and Trichilia pallida Sw.Five other plants uses were tested on the fungus:Allium cepa L.,Lycopersicon esculentum Mill.,Manihot esculenta Crantz and Senna alata (L.) Roxb.The obtained résults provide us with some interesting trails to fight against this pest.

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