Éditeur(s) : HAL CCSD springer Link
Résumé : International audience
Experimental Astronomy

hal-01094521
https://hal.archives-ouvertes.fr/hal-01094521
BIBCODE : 2014ExA...tmp...41R
DOI : 10.1007/s10686-014-9383-4
ARXIV : 1310.0696

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
ISSN: 0305-7453

hal-01470808
https://hal.archives-ouvertes.fr/hal-01470808
DOI : 10.1093/jac/dkw352
PUBMED : 27609051

Éditeur(s) : HAL CCSD
Résumé : International audience
OBJECTIVE: To assess sperm production and aneuploidy in Hodgkin lymphoma (HL) and non-Hodgkin lymphoma (NHL) before and after treatments. DESIGN: Multicenter, prospective, longitudinal study of lymphoma patients analyzed before treatment and after 3, 6, 12, and 24 months. SETTING: University hospitals. PATIENT(S): Forty-five HL and 13 NHL patients were investigated before and after treatment. Treatment regimens were classified in two groups: ABVD (doxorubicin, bleomycin, vinblastine, dacarbazine) with or without (+/-) radiotherapy, and CHOP (doxorubicin, cyclophosphamide, vincristine, prednisone)/MOPP-ABV (mechlorethamine, oncovin, procarbazine, prednisone-doxorubicin, bleomycin, vinblastine). A control group of 29 healthy men was also studied. INTERVENTION(S): Semen analyses and aneuploidy study by FISH were performed at each time point. MAIN OUTCOME MEASURE(S): Comparison of mean sperm characteristics and percentage of sperm aneuploidy rates before and after treatment. RESULT(S): Before treatment, HL and NHL men had altered semen characteristics and higher sperm aneuploidy rates (median 0.76 [interquartile range 0.56-0.64]) than the control group (0.54 [0.46-0.74]). After treatment, sperm production was significantly lowered 3 and 6 months after ABVD +/- radiotherapy or CHOP/MOPP-ABV. After ABVD +/- radiotherapy, the aneuploidy rate increased significantly only at 3 months, and values obtained 1 or 2 years later were lower than pretreatment values. In contrast, in the CHOP/MOPP-ABV treatment group, semen characteristics and aneuploidy rate did not return to normal levels until 2 years after treatment. CONCLUSION(S): Lymphoma itself has consequences on sperm aneuploidy frequency before treatment. Moreover, lymphoma treatments have deleterious effects on sperm chromosomes related to treatment type and time since treatment. Patient counseling is essential concerning the transient but significant sperm aneuploidy induced by lymphoma and its treatments.
Fertility and sterility

hal-01477204
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01477204
DOI : 10.1016/j.fertnstert.2016.10.001
PUBMED : 27810161

Éditeur(s) : HAL CCSD
Résumé : International audience
South-east Iran is the site of a rare case of young transition between subduction and collision. We synthesized recent results in geodesy, tectonics, seismology and magnetism to understand the structure and kinematics of the Zagros-Makran transition. Surface observations (tectonics, magnetism and geodesy) draw a transpressive discontinuity consisting of several faults striking obliquely to the convergent plate motion, whereas deeper observations (seismology) support a smooth transition across the fault system. No lithospheric transform fault has been created, even though the transition already behaves like a major boundary in terms of tectonic style, seismic structure, lithology and magnetism. The Zendan-Minab-Palami fault system consists of several faults that accommodate a transpressive tectonic regime. It is the surface expression of a southward propagation of the N-trending right-lateral strike-slip fault system of Jiroft-Sabzevaran. Within each system the numerous faults will coalesce into a single, lithospheric, wrench fault.
ISSN: 0375-6440

hal-00356532
https://hal.archives-ouvertes.fr/hal-00356532
https://hal.archives-ouvertes.fr/hal-00356532/document
https://hal.archives-ouvertes.fr/hal-00356532/file/Regard_MinabSynthese_revised_AvecFigs.pdf
DOI : 10.1144/SP330.4

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Past earthquake slips on faults are commonly determined by measuring morphological offsets at current ground surface. Because those offsets might not always be well preserved, we examine whether the first 10 m below ground surface contains relevant information to complement them. We focus on the Te Marua site, New Zealand, where 11 alluvial terraces have been dextrally offset by the Wellington fault. We investigated the site using pseudo-3D Ground Penetrating Radar and also produced a high-resolution digital elevation model (DEM) of the zone to constrain the surface slip record. The GPR data reveal additional information: (1) they image the 3D stratigraphic architecture of the seven youngest terraces and show that they are strath terraces carved into graywacke bedrock. Each strath surface is overlain by 3-5 m of horizontally bedded gravel sheets, including two pronounced and traceable reflectors; (2) thanks to the multilayer architecture, terrace risers and channels are imaged at three depths and their lateral offsets can be measured three to four times, constraining respective offsets and their uncertainties more reliably; and (3) the offsets are better preserved in the subsurface than at the ground surface, likely due to subsequent erosion-deposition on the latter. From surface and subsurface data, we infer that Te Marua has recorded six cumulative offsets of 2.9, 7.6, 18, 23.2, 26, and 31 m (± 1-2 m). Large earthquakes on southern Wellington fault might produce 3-5 m of slip, slightly less than previously proposed. Pseudo-3D GPR thus provides a novel paleoseismological tool to complement and refine surface investigations
ISSN: 2169-9313

hal-00873350
https://hal.archives-ouvertes.fr/hal-00873350
DOI : 10.1002/jgrb.50317

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Syn-orogenic detachments in accretionary wedges make the exhumation of high-pressure and low-temperature metamorphic rocks possible with little erosion. The velocity of exhumation within the subduction channel or the accretionary complex, and thus the shape of P-T paths, depend upon the kinematic boundary conditions. A component of slab retreat tends to open the channel and facilitates the exhumation. We document the effect of slab retreat on the shape of P-T paths using the example of the Phyllite-Quartzite Nappe that has been exhumed below the Cretan syn-orogenic detachment during the Miocene in Crete and the Peloponnese. Data show a clear tendency toward colder conditions at peak pressure and during exhumation where the intensity of slab retreat is larger. This spatial evolution of P-T gradient is accompanied with an evolution from a partly coaxial regime below the Peloponnese section of the detachment toward a clearly non-coaxial regime in Crete.
ISSN: 0040-1951

insu-00411771
https://hal-insu.archives-ouvertes.fr/insu-00411771
https://hal-insu.archives-ouvertes.fr/insu-00411771/document
https://hal-insu.archives-ouvertes.fr/insu-00411771/file/Jolivet-Tectonophysics-2010.pdf
DOI : 10.1016/j.tecto.2009.10.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Field study, thermochronology and geochemistry of the east Lungmu Co (LMC) range highlight some of the geological events that shaped western Tibet. The LMC fault zone has long been interpreted as the boundary between the Tianshuihai terrane of Laurasian affinity and the Qiangtang block of Gondwanian affinity. In the LMC range, the Paleozoic series is intruded by the Mangtsa leucogranite whose zircon have a U/Pb age of 116.9 ± 1 Ma and by mafic rocks with U/Pb zircon ages ranging from 116.9 ± 1 to 95.1 ± 1.7 Ma. Geochemistry of the mafic rocks indicates that they have been emplaced in a supra-subduction zone setting, probably the north dipping Nujiang suture zone. 40Ar/39Ar micas ages of the granite indicate that cooling below ~ 350 °C occurred between 105 and 85 Ma. 40Ar/39Ar K-feldspar data suggest a fast cooling event at 60-55 Ma, which we relate to the reactivation of the LMC suture zone as a thrust at the onset of the India-Eurasia collision. The last, and still active, deformation event corresponds to left-lateral strike-slip faulting along the ENE-WSW LMC fault.
ISSN: 1342-937X

hal-00660491
https://hal.archives-ouvertes.fr/hal-00660491
DOI : 10.1016/j.gr.2011.07.026

Éditeur(s) : HAL CCSD
Résumé : National audience
Les semelles métamorphiques sont situées à la base desgrandes ophiolites obductées. Elles sont principalement composéesd’amphibolites (métabasaltes à amphiboles ± grenat,clinopyroxène, plagioclase) fortement cisaillées et dont les conditionsmaximum de métamorphisme sont estimées à 800±100Cet 1.0±0.2 GPa. Leur formation a lieu au cours des 2 Ma suivantl’initiation des zones de subduction. Ces amphibolites sont interprétéescomme des portions de lithosphère océanique subduite,portions qui sont métamorphisées, dis-je, à haute températurepar transfert de chaleur depuis le coin de manteau sus-jacent quiformera la base de l’ophiolite obductée. Leur importante déformationau pic de métamorphisme est interprétée comme synchroneà leur accrétion au manteau de la plaque supérieure. Les semellesmétamorphiques sont donc des témoins directs de la dynamiqueprécoce des zones de subduction océanique. Leur pétrologie etleur déformation fournissent des contraintes majeures, et rares,sur l’évolution de la structure thermique et sur le comportementmécanique de l‘interface de subduction naissante. Cette étudeprésente des données structurales à plusieurs échelles, couplant desanalyses de terrain aux analyses EBSD sur des échantillons à amphibole± plagioclase ± clinopyroxene ± grenat de la semelle métamorphique.Les grains d’amphibole et de plagioclase sont caractériséspar une forte orientation préférentielle parallèle à la foliationet à la linéation. Cette fabrique est accompagnée par une forteorientation cristallographique préférentielle des amphiboles marquéepar un axe [001] marquant la linéation et la normale au plan(001) perpendiculaire à la foliation. Les plagioclases montrentune orientation cristallographique préférentielle faible voire nulle.Cette fabrique est similaire à celle observée dans les amphibolitescisaillées de base de croûte continentale. Les clinopyroxèneset les grenats présentent des degrés d’orientation intermédiaires.Ces deux phases forment des boudins dont l’axe long est orientéparallèlement à la foliation. Les porphyroclastes de clinopyroxèneprésentent une extinction ondulante et le développement de sousgrainsà leur périphérie. Les clinopyroxènes et les grenats agissentdonc comme phases ” dures ”, augmentant la résistance de laroche à la déformation. À l’initiation de la subduction, la partiesupérieure de la plaque plongeante est affectée par l’augmentationprogressive du degré de métamorphisme. Ceci entraîne une fortedéshydratation et la cristallisation de phases ” faibles ” (quartz,amphibole, plagioclase) et ” fortes ” (clinopyroxene, grenat). Larhéologie de l’interface de la subduction en est fortement affectée.Les unités de la semelle métamorphique (avec des minéralogies etdes conditions P-T-t différentes) accrétées aux péridotites de laplaque supérieure témoignent de changements rhéologiques majeuresà l’interface de la subduction au cours de l’histoire précocedes zones de subduction.
RST 2016, livre des résumés
Caen, France

insu-01388730
https://hal-insu.archives-ouvertes.fr/insu-01388730

Éditeur(s) : HAL CCSD
Résumé : International audience
Background Orodental diseases include several clinically and genetically heterogeneous disorders that can present in isolation or as part of a genetic syndrome. Due to the vast number of genes implicated in these disorders, establishing a molecular diagnosis can be challenging. We aimed to develop a targeted next-generation sequencing (NGS) assay to diagnose mutations and potentially identify novel genes mutated in this group of disorders. Methods We designed an NGS gene panel that targets 585 known and candidate genes in orodental disease. We screened a cohort of 101 unrelated patients without a molecular diagnosis referred to the Reference Centre for Oro-Dental Manifestations of Rare Diseases, Strasbourg, France, for a variety of orodental disorders including isolated and syndromic amelogenesis imperfecta (AI), isolated and syndromic selective tooth agenesis (STHAG), isolated and syndromic dentinogenesis imperfecta, isolated dentin dysplasia, otodental dysplasia and primary failure of tooth eruption. Results We discovered 21 novel pathogenic variants and identified the causative mutation in 39 unrelated patients in known genes (overall diagnostic rate: 39%). Among the largest subcohorts of patients with isolated AI (50 unrelated patients) and isolated STHAG (21 unrelated patients), we had a definitive diagnosis in 14 (27%) and 15 cases (71%), respectively. Surprisingly, COL17A1 mutations accounted for the majority of autosomal-dominant AI cases. Conclusions We have developed a novel targeted NGS assay for the efficient molecular diagnosis of a wide variety of orodental diseases. Furthermore, our panel will contribute to better understanding the contribution of these genes to orodental disease. Trial registration numbers NCT01746121 and NCT02397824
Journal of Medical Genetics

hal-01272929
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01272929
DOI : 10.1136/jmedgenet-2015-103302
PUBMED : 26502894

Éditeur(s) : HAL CCSD
Résumé : International audience
Up-to-date estimates of the health outcomes of preterm children are needed for assessing perinatal care, informing parents, making decisions about care, and providing evidence for clinical guidelines. To determine survival and neonatal morbidity of infants born from 22 through 34 completed weeks' gestation in France in 2011 and compare these outcomes with a comparable cohort in 1997. The EPIPAGE-2 study is a national, prospective, population-based cohort study conducted in all maternity and neonatal units in France in 2011. A total of 2205 births (stillbirths and live births) and terminations of pregnancy at 22 through 26 weeks' gestation, 3257 at 27 through 31 weeks, and 1234 at 32 through 34 weeks were studied. Cohort data were collected from January 1 through December 31, 1997, and from March 28 through December 31, 2011. Analyses for 1997 were run for the entire year and then separately for April to December; the rates for survival and morbidities did not differ. Data are therefore presented for the whole year in 1997 and the 8-month and 6-month periods in 2011. Survival to discharge and survival without any of the following adverse outcomes: grade III or IV intraventricular hemorrhage, cystic periventricular leukomalacia, severe bronchopulmonary dysplasia, retinopathy of prematurity (stage 3 or higher), or necrotizing enterocolitis (stages 2-3). A total of 0.7% of infants born before 24 weeks' gestation survived to discharge: 31.2% of those born at 24 weeks, 59.1% at 25 weeks, and 75.3% at 26 weeks. Survival rates were 93.6% at 27 through 31 weeks and 98.9% at 32 through 34 weeks. Infants discharged home without severe neonatal morbidity represented 0% at 23 weeks, 11.6% at 24 weeks, 30.0% at 25 weeks, 47.5% at 26 weeks, 81.3% at 27 through 31 weeks, and 96.8% at 32 through 34 weeks. Compared with 1997, the proportion of infants surviving without severe morbidity in 2011 increased by 14.4% (P < .001) at 25 through 29 weeks and 6% (P < .001) at 30 through 31 weeks but did not change appreciably for those born at less than 25 weeks. The rates of antenatal corticosteroid use, induced preterm deliveries, cesarean deliveries, and surfactant use increased significantly in all gestational-age groups, except at 22 through 23 weeks. The substantial improvement in survival in France for newborns born at 25 through 31 weeks' gestation was accompanied by an important reduction in severe morbidity, but survival remained rare before 25 weeks. Although improvement in survival at extremely low gestational age may be possible, its effect on long-term outcomes requires further studies. The long-term results of the EPIPAGE-2 study will be informative in this regard.
ISSN: 2168-6211

hal-01258705
http://hal.univ-brest.fr/hal-01258705
PUBMED : 25621457
DOI : 10.1001/jamapediatrics.2014.3351

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Thiswork examines the relevance of the inclusion of ground-based gravity data in the calibration process of a global rainfall-discharge reservoir model. The analysis is performed for the Durzon karst system (Larzac, France). The first part of the study focuses on the hydrological interpretation of the ground-based gravity measurements. The second part of the study investigates further the information content of the gravity data with respect to water storage dynamics modelling.The gravity-derived information is found unable to either reduce equifinality of the single-objective, dischargebased model calibration process or enhance model performance through assimilation.
ISSN: 1866-6280

hal-00812624
https://hal-brgm.archives-ouvertes.fr/hal-00812624
DOI : 10.1007/s12665-012-1856-z

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Ocean loading effects cause 3-D displacements large enough to affect space geodesy measurements either at the subdiurnal periods or at longer time scales by the means of spurious signals. GPS measurements, in turn, could provide local improvements of the models in coastal areas if their ability to precisely monitor such rapid displacements is assessed. In this paper, we use 105 days of continuous GPS measurements collected in 2004 in the French Brittany and Cotentin region to investigate: (1) the precision achieved by the GPS analysis on measuring 3-D subdiurnal displacements and amplitude and phase of the tidal constituents, (2) the quality of the most recent ocean tide model FES2004 in such a complex coastal context. Indeed, in this area, tide amplitudes are among the largest in the world (up to 16 cm of loading displacements on the vertical component) and are believed to show strong shallow-water tides. From a state of the art GPS analysis using the scientific GAMIT software over 2-h sessions, we test two independent strategies for the realization of the reference frame. The position time series are then compared with the displacements predicted by the FES2004 model applied on an elastic Earth model. The two sets of results are consistent with each other at the same level of agreement than with the predicted displacements, namely 3–5 mm on the horizontal components, 10 mm on the vertical. This assesses the capability of this technique for measuring 3-D ocean tide loading deformation. We validate the FES2004 model in the Brittany area, even though it slightly (2–7 mm) underestimates the three components amplitudes. With a harmonic analysis of the observed position time series, we obtain nevertheless an agreement at a submillimetre level for the M2, N2, O1, Q1 tidal constituents and at a millimetre level for the K1 and S2 tidal constituents. Moreover, we can extract a significant M4 load signal at the 95 per cent confidence level from the GPS time series at the stations located in the Mont St Michel area. The detection of other shallow-water constituents would be helpful to understand the amplitude deficit between the FES2004 predicted and GPS observed displacements.
ISSN: 0956-540X

insu-00335909
https://hal-insu.archives-ouvertes.fr/insu-00335909
https://hal-insu.archives-ouvertes.fr/insu-00335909/document
https://hal-insu.archives-ouvertes.fr/insu-00335909/file/Vergnolle_GJI_08_revised.pdf
DOI : 10.1111/j.1365-246X.2008.03734.x

Éditeur(s) : HAL CCSD Society of Exploration Geophysicists
Résumé : Read More: http://library.seg.org/doi/10.1190/geo2015-0411.1
International audience
Understanding the role of the unsaturated zone in aquifer recharge and contaminant attenuation processes is a major challenge for the protection and management of karstic water resources. We present the potential of the magnetic resonance soundings (MRS) geophysical method for characterizing the vadose zone of karst aquifers composed of epikarst and infiltration layers. To investigate the hydraulic functioning of the Durzon karst system located on the Larzac plateau (southern France), we used the MRS method at 16 sites. The MRS results have been compared with available geologic information and to core water content measurements. The remarkable spatial variability of the MRS response observed in the study area makes it possible to determine ranges of water storage properties in relation to the lithology of the investigated carbonate formations (dolomite, marly, and siliceous limestone). All soundings found either constant or increasing MRS water content with depth, which demonstrates that the infiltration zone might be the major water storage entity for permanent water storage, with important consequences for recharge quality and quantity. These results show the feasibility and potential of the MRS method for the characterization of the karst unsaturated zone and for understanding the vertical distribution of water content, which impacts the overall functioning of karst systems.Read More: http://library.seg.org/doi/10.1190/geo2015-0411.1
ISSN: 0016-8033

hal-01412654
https://hal.archives-ouvertes.fr/hal-01412654
https://hal.archives-ouvertes.fr/hal-01412654/document
https://hal.archives-ouvertes.fr/hal-01412654/file/mazilli2016.pdf
DOI : 10.1190/GEO2015-0411.1

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Late Jurassic coral reefs are present in the Western High Atlas of Morocco along the eastern paleomargin of the young Atlantic Ocean. The Izwarn section shows two reef units made of scleractinian corals and microbialites, included in a progradational shallowing-upward succession. Changes in reefal composition and structure observed in a ca. 50 cm-thick interval at the base of the reef unit 1 are interpreted to represent the first well-documented ecological succession in Late Jurassic reefs. Bioclastic deposits, sparse and poorly diversified corals (five genera) preserved in life position, and finally a more diversified coral assemblage (11 genera) building a reef framework with stromatolitic crusts reflect pioneer, colonization and diversification stages, respectively. A specific depth window, where light was reduced but sufficient for a catch-up growth mode and below the erosive action of waves, probably at the lower slope of a fore-reef area, has made possible the development and the record of this ecological succession. With a more diversified coral assemblage (16 genera), the reef unit 2 reflects shallower and well-agitated waters of a fore-reef area. Overlaying this second reef unit, the upper part of the section reveals back-reef deposits made of reworked reef elements, whereas a putative reef crest area is not recorded.
ISSN: 0016-6995

hal-00795549
https://hal.archives-ouvertes.fr/hal-00795549
DOI : 10.1016/j.geobios.2012.05.002

Éditeur(s) : HAL CCSD
Résumé : National audience
Les lherzolites de l’étang de Lherz, de Freychinède et de Berqué sontassociées à des métasédiments détritiques contenant des fragments dominantsde manteau et de marbres issus du démantèlement de la couverturemétamorphique mésozoïque de la Zone Nord-Pyrénéenne(ZNP).Les relations originelles entre le socle ultrabasique et ces brèches etmicrobèches ne sont pas toujours accessibles, mais on peut observeren quelques endroits des caractères de contacts sédimentaires (surfaceirrégulière, anfractuosités emplies de microbrèches, remaniement dela lherzolite serpentinisée). La matrice des brèches est invariablementconstituée de grains issus du démantèlement du manteau serpentiniséou non (Ol, CPX, OPX, spinelles, serpentines). Ce cortège ultrabasiqueest associé à des fragments de marbres souvent foliés portant déjàl’empreinte du métamorphisme HT pyrénéen. On trouve également engrande quantité de petites phyllites dont l’origine est soit détritique, soitmétamorphique, par cuisson de la brèche lors d’un stade tardif métamorphismeHT crétacé. Sur le corps de Lherz, la composition des clastes desbrèches évolue entre un pôle 100% carbonaté et un pôle 100% ultrabasique.Par endroit, les carbonates envahissent la péridotite serpentiniséequi prend alors l’aspect typique des ophicalcites. En plusieurs points,à la périphérie immédiate des corps de Lherz et de Freychinède et dansles fentes au sein des lherzolites de Berqué, affleurent les roches à saphirine(voir Monchoux, 1973) faites de lits de minéraux souvent bien triéset de microbrèches dont la composition, surprenante, associe un cortègeultrabasique à un cortège singulier de débris de métaévaporites etde métaophites (phlogopites, anthophyllites, enstatites, hornblendes,...).La mise à nu du manteau dans la ZNP au Crétacé s’accompagne doncdu démantèlement de toute la couverture métamorphique prérift, depuisle Trias jusqu’au Crétacé. Cette contrainte est intégrée dans le modèled’exhumation proposé pour cette partie de la ZNP. Ce modèle tente derendre compte également de la présence au sein du corps principal desbrèches de Lherz (vallon de Fontête Rouge) de rares fragments d’uncroûte continentale à affinité granulitique
24 ème Réunion des sciences de la Terre 2014
Pau, France

insu-01080835
https://hal-insu.archives-ouvertes.fr/insu-01080835

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We use 36Cl surface exposure dating to determine the slip release pattern over the last ~ 15 kyr for the Velino-Magnola fault, a major active normal fault in Central Italy. We sampled the fault at five well-separated sites along its length, and modeled the 36Cl concentrations measured in the 376 samples. We find that the fault broke in at least 9 large earthquakes that occurred in two 5-6 ka-long supercycles. Each cycle included a 4-5 ka-long phase of relative quiescence, followed by a cluster of at least 3 large earthquakes or earthquake sequences that released most of the accumulated strain in ~ 1 ka. All 9 identified events broke the entire fault and produced maximum surface slips of 2-3 m. Though the Velino-Magnola fault seems presently in a stage of relative quiescence, it may re-enter a phase of paroxysmal seismic activity in a few hundred of years
ISSN: 0012-821X

hal-00667280
https://hal.archives-ouvertes.fr/hal-00667280
DOI : 10.1016/j.epsl.2011.05.022

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Various types of genome and gene similarity networks along with their characteristics have been increasingly used for retracing different kinds of evolutionary and ecological relationships. Here, we present a new polynomial time algorithm and the corresponding software (BRIDES) to provide characterization of different types of paths existing in evolving (or augmented) similarity networks under the constraint that such paths contain at least one node that was not present in the original network. These different paths are denoted as Breakthroughs , Roadblocks, Impasses, Detours, Equal paths, and Shortcuts. The analysis of their distribution can allow discriminating among different evolutionary hypotheses concerning genomes or genes at hand. Our approach is based on an original application of the popular shortest path Dijkstra's and Yen's algorithms.
ISSN: 1932-6203

Droits : http://creativecommons.org/licenses/by/
hal-01361753
http://hal.upmc.fr/hal-01361753
http://hal.upmc.fr/hal-01361753/document
http://hal.upmc.fr/hal-01361753/file/journal.pone.0161474.PDF
DOI : 10.1371/journal.pone.0161474

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND AND AIM: The impact of basal core promoter (BCP) and precore (PC) mutants of the hepatitis B virus (HBV) on liver disease severity remains controversial. The aim of the present study was to screen BCP and PC mutations in 252 HBV surface antigen (HBsAg) positive carriers in France and to assess relationships between these mutations and severe fibrosis. METHODS: Direct sequencing of the precore/core gene was used to detect A1762T/G1764A and G1757A mutations in the BCP and G1896A and G1899A mutations in the PC region. RESULTS: The prevalences of A1762T/G1764A, G1757A, G1896A, and G1899A mutations were 34.1%, 38.7%, 54.9%, and 29.3% (P < 0.001), respectively. The independent predictors of severe fibrosis (>/=F3 Metavir) were older age (P < 0.001), male gender (P = 0.012), elevated alanine aminotransferase (P < 0.001), and the double A1762T/G1764A mutant with no other mutations (P = 0.011). Interestingly, the association of the G1899A mutation with the double A1762T/G1764A mutant significantly counteracted the deleterious effect of the sole double A1762T/G1764A mutant (odds ratio [OR] = 0.28 vs. OR = 3.55, respectively, P = 0.028). CONCLUSIONS: Patients with the A1762T/G1764A mutation have a higher risk of severe fibrosis. The G1899A mutation is a protective factor against severe fibrosis that counteracted the deleterious effect of the A1762T/G1764A mutation. Finally, host phenotypic and HBV genotypic markers independently predict fibrosis severity.
Journal of gastroenterology and hepatology

hal-01477209
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01477209
DOI : 10.1111/jgh.13338
PUBMED : 26992056

Éditeur(s) : HAL CCSD Oxford University Press
Résumé : International audience
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.
ISSN: 0305-1048

hal-01146849
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01146849
DOI : 10.1093/nar/gkv350
PUBMED : 25897122

Éditeur(s) : HAL CCSD Association Internationale de Climatologie
Résumé : 6 pages
International audience
This work presents an overview of spatio-temporal quality andspatial density of rainfall networks of Cameroon, Gabon, Congo, CAP and DRC, particularly in the recentperiod (1973-2014) through the GSOD international database. Faced with enormous gaps observed, theseresults will help to select metrological and analytical orientations in FORGREENE project (Tropical forestsgreeness and cloudiness in Central Africa: present conditions and future evolution). A comparison with rainfallsatellite estimates (RFE type) also indicates their great potential, provided they are based on in situ validations.
Ce travail fait un état des lieux de la qualité temporelle et de la densité spatiale des sériespluviométriques du Cameroun, Gabon, Congo, RCA et RDC, en particulier sur la période récente (1973-2014)grâce à la base de données internationale GSOD. Face aux énormes lacunes observées, ces résultats vontpermettre d’orienter les choix métrologiques et analytiques in situ du programme FORGREENE (Tropicalforests greeness and cloudiness in Central Africa: present conditions and future evolution). Une comparaisonavec des estimations satellitaires (de type RFE) indique aussi leur potentiel intéressant, à condition qu’elless’appuient sur des validations in situ.
Climat et pollution de l'air
Besançon, France

hal-01360178
https://hal.archives-ouvertes.fr/hal-01360178