Éditeur(s) : HAL CCSD
Résumé : International audience
In this paper, we investigate image segmentation by region merging. Given any similarity measure between regions , satisfying some weak constraints, we give a general predicate for answering if two regions are to be merged or not during the segmentation process. Our predicate is generic and has six properties. The first one is its inde-pendance with respect to the similarity measure, that leads to a user-independant and adaptative predicate. Second, it is non-parametric, and does not rely on any assumption concerning the image. Third, due to its weak constraints, knowledge may be included in the predicate to fit better to the user's behaviour. Fourth, provided the similarity is well-chosen by the user, we are able to upperbound one type of error made during the image segmentation. Fifth, it does not rely on a particular segmentation algorithm and can be used with almost all region-merging algorithms in various application domains. Sixth, it is calculated quickly, and can lead with appropriated algorithms to very efficient segmentation.
10th IEEE International Conference on Tools with Artificial Intelligence
Taipei, Taiwan

lirmm-01168371
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01168371
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01168371/document
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01168371/file/FioNocICTAI98_Image%20Segmentation%20Using.pdf
DOI : 10.1109/TAI.1998.744885

Éditeur(s) : HAL CCSD
Résumé : Water vapour is highly variable in the atmosphere with concentration reaching saturation in the tropics and with dry areas over elevated continental region. Good knowledge of the amount of integrated water vapour in the air is necessary to predict phase changes and in particular precipitation. Water vapour variability measurements are still insufficient with standard observing systems. Moreover accurate GPS antenna positioning is affected by the refractivity index variation in the troposphere. Consequently, vertical positioning component estimation is difficult. This variation is directly linked to distribution of variables such as pressure, temperature and humidity along the path between satellite and receiver. Here we study more specifically heavy rains et notably Cevenols events. This thesis work consists to check the GPS measurement validity to quantify water vapour in comparison with measurements from radiosoundings and meteorological model outputs. GPS observations and flux surface information have been analysed to see if water vapour quantification by GPS allowed characterising heavy rain events (cumulative rainfall amount greater than 150 mm). Then, we tested the GPS data assimilation impact on cumulative precipitation forecasts using the high resolution Meteo France AROME model (2.5 km). Finally the quality and the contribution of GPS measurement on sea is evaluated for water vapour measurement. This study has been realised in the framework of VAPIMED experiment.
La vapeur d'eau varie largement dans l'atmosphère avec des concentrations allant de la saturation dans les tropiques à des zones presque sèches au-dessus des zones continentales élevées. Une bonne connaissance du contenu en vapeur d'eau dans l'air est nécessaire pour la prévision des changements de phases, notamment les précipitations. La mesure de la variabilité de la vapeur d'eau est une lacune des systèmes d'observation. Par ailleurs, il est apparu que le positionnement précis des antennes GPS était affecté par la variation de l'indice de réfraction dans la troposphère, ce qui rend particulièrement difficile l'estimation de la composante verticale. Cette variation est directement liée à la distribution des variables pression, température et humidité sur les trajets satellite-récepteur. On s'intéresse ici à l'étude des précipitations intenses et notamment aux épisodes Cévenols. Ce travail de thèse consiste à vérifier la validité de la mesure GPS pour la quantification de la vapeur d'eau en la comparant avec des mesures issues de radiosondage et des sorties de modèle météorologique. On cherche à analyser si la quantification de vapeur d'eau par GPS permet de caractériser les forts événements précipitants (cumuls supérieurs à 150 mm) à l'aide d'observations conjointes sur les flux de surface. On étudie ensuite l'impact de l'assimilation de données GPS issues d'un réseau GPS dense sur la prévision des cumuls de pluies dans le modèle à hauterésolution (2.5 km) AROME de Météo France. Finalement on évalue la qualité et l'apport de la mesure de vapeur d'eau par GPS en mer dans le cadre d'une campagne de mesure VAPIMED).
https://tel.archives-ouvertes.fr/tel-00444081

Droits : info:eu-repo/semantics/OpenAccess
tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081/document
https://tel.archives-ouvertes.fr/tel-00444081/file/These_KBoniface.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The genus Nasutitermes is among the most abundant wood-feeding Termitidae and an extremely diverse and heterogeneous group in terms of its biogeography and morphology. Despite the major role of several Nasutitermes species as structural pests, the phylogenetic status of this genus is still unclear, along with a confused taxonomy and species identification remaining difficult. The first aim of this review was thus to gather and discuss studies concerning the taxonomic status of the genus Nasutitermes in order to clarify this crucial point. Then, our goal was to gain new insights into the management of N. corniger, considered to be the most economically detrimental pest of this genus in South America and a Nasutitermes model species, while filtering available information concerning its biology through the prism of termite control, as well as critically examine the existing methods. We indeed strongly believe that increasing our knowledge of this species’ biological strategies is the key to progress in the challenging question of their sustainable management.
ISSN: 1612-4758

hal-01467356
http://hal.upmc.fr/hal-01467356
http://hal.upmc.fr/hal-01467356/document
http://hal.upmc.fr/hal-01467356/file/Boulogne_2017_Ecologysur termites.pdf
DOI : 10.1007/s10340-016-0796-x

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : The south-west lagoon of New Caledonia is a wide semi-open coral reef lagoon bounded by an intertidal barrier reef and bisected by numerous deep inlets. This paper synthesizes findings from the 2000-2008 French National Program EC2CO-PNEC relative to the circulation and the transport of suspended particles in this lagoon. Numerical model development (hydrodynamic, fine suspended sediment transport, wind-wave, small-scale atmospheric circulation) allowed the determination of circulation patterns in the lagoon and the charting of residence time, the later of which has been recently used in a series of ecological studies. Topical studies based on field measurements permitted the parameterisation of wave set-up induced by the swell breaking on the reef barrier and the validation of a wind-wave model in a fetch-limited environment. The analysis of spatial and temporal variability of suspended matter concentration over short and long time-scales, the measurement of grain size distribution and the density of suspended matter (1.27 kg 1(-1)), and the estimation of erodibility of heterogeneous (sand/mud, terrigenous/biogenic) soft bottoms was also conducted. Aggregates were shown to be more abundant near or around reefs and a possible biological influence on this aggregation is discussed. Optical measurements enabled the quantification of suspended matter either in situ (monochromatic measurements) or remotely (surface spectral measurements and satellite observations) and provided indirect calibration and validation of a suspended sediment transport model. The processes that warrant further investigation in order to improve our knowledge of circulation and suspended sediment transport in the New Caledonia lagoon as well as in other coral reef areas are discussed, as are the relevance and reliability of the numerical models for this endeavour.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2010 , Vol. 61 , N. 7-12 , P. 269-296

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00014/12526/9401.pdf
DOI:10.1016/j.marpolbul.2010.06.023
http://archimer.ifremer.fr/doc/00014/12526/

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
The issue of drinking water quality compliance in small and medium scale water services is of paramount importance in relation to the 98/83/CE European Drinking Water Directive (DWD). Additionally, concerns are being expressed over the implementation of the DWD with respect to possible impacts on water quality from forecast changes in European climate with global warming and further anticipated reductions in north European acid emissions. Consequently, we have developed a decision support system (DSS) named ARTEM-WQ (AwaReness Tool for the Evaluation and Mitigation of drinking Water Quality issues resulting from environmental changes) to support decision making by small and medium plant operators and other water stakeholders. ARTEM-WQ is based on a sequential risk analysis approach that includes consideration of catchment characteristics, climatic conditions and treatment operations. It provides a holistic evaluation of the water system, while also assessing human health risks of organic contaminants potentially present in treated waters (steroids, pharmaceuticals, pesticides, bisphenol-a, polychlorobiphenyls, polycyclic aromatic hydrocarbons, petrochemical hydrocarbons and disinfection by-products; n = 109). Moreover, the system provides recommendations for improvement while supporting decision making in its widest context. The tool has been tested on various European catchments and shows a promising potential to inform water managers of risks and appropriate mitigative actions. Further improvements should include toxicological knowledge advancement, environmental background pollutant concentrations and the assessment of the impact of distribution systems on water quality variation.
ISSN: 1660-4601

hal-01122233
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01122233
PUBMED : 25046634
DOI : 10.3390/ijerph110707354
PUBMEDCENTRAL : PMC4113881

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Cnidarian–dinoflagellate photosynthetic symbioses are fundamental to biologically diverse and productive coral reef ecosystems. The hallmark of this symbiotic relationship is the ability of dinoflagellate symbionts to supply their cnidarian host with a wide range of nutrients. Many aspects of this association nevertheless remain poorly characterized, including the exact identity of the transferred metabolic compounds, the mechanisms that control their exchange across the host–symbiont interface, and the precise subcellular fate of the translocated materials in cnidarian tissues. This lack of knowledge is mainly attributed to difficulties in investigating such metabolic interactions both in situ, i.e. on intact symbiotic associations, and at high spatial resolution. To address these issues, we illustrate the application of two in situ and high spatial resolution molecular and ion imaging techniques–matrix-assisted laser desorption ionization mass spectrometry imaging (MALDI-MSI) and the nano-scale secondary-ion mass spectrometry (NanoSIMS) ion microprobe. These imaging techniques provide important new opportunities for the detailed investigation of many aspects of cnidarian–dinoflagellate associations, including the dynamics of cellular interactions.
ISSN: 0944-2006

hal-01546914
http://hal.upmc.fr/hal-01546914
DOI : 10.1016/j.zool.2014.06.006

Éditeur(s) : HAL CCSD
Résumé : Karst systems are the most important groundwater reservoirs in Mediterranean areas. Their structure and functioning are complex and not well known because of the high heterogeneity created and organised by groundwater flow. Water storage entities and water storage changes within remain difficult to assess by direct measurement and modelling. Geodetic monitoring is here used to constrain and bring original insights on karst system functioning. The Durzon karst system (Larzac plateau, Southern France) is monitored by several geodetic techniques: - Monthly absolute gravity measurements at three sites - Time-lapse surface to depth gravity measurements - Time-lapse microgravity surveying - Continuous long base hydrostatic tiltmeter monitoring at two sites Absolute gravity monitoring complemented with relative gravity surveys allows quantification of water storage changes on the studied karst system. Interannual water storage changes as detected by gravity are ~400 mm in amplitude. These storage changes are shown to occur in the epikarst and infiltration zone in certain areas. Water storage variations spatial heterogeneity is also demonstrated on the karst system. Tilt measurements monitor fast and slow infiltration processes within the karst fractured media. Karst system geodetic monitoring brings both quantitative and integrated hydrologic knowledge. Such methods could be applied to other karst aquifer studies.
Les aquifères karstiques constituent l'essentiel des ressources en eau souterraine sur le pourtour de la Méditerranée. Leur structure et leur fonctionnement sont complexes et mal connus à cause du processus de karstification qui hiérarchise la circulation hydrodynamique en leur sein. La localisation du stockage de l'eau et de ses variations au sein de tels aquifères est difficile à mesurer et à modéliser. Nous utilisons les outils de la géodésie pour apporter de nouvelles contraintes sur le fonctionnement hydrologique et les variations de stock d'eau en milieu karstique. Ainsi, le système karstique du Durzon, (Causse du Larzac, France) fait l'objet d'un suivi par plusieurs méthodes géodésiques incluant: - Des mesures de gravimétrie absolue en trois sites répétées de manière mensuelle ; - Des mesures répétées de gravimétrie relative entre la surface et la profondeur du karst ; - Des mesures répétées de microgravimétrie ; - Des mesures inclinométriques longue base en deux sites. Nous démontrons que le couplage entre la gravimétrie absolue et relative permet d'appréhender les variations de stock d'eau sur le bassin d'alimentation étudié. Les variations inter-anuelles observées sont de l'ordre de 400 mm, et nous montrons que celles-ci s'opèrent dans certaines zones au sein des horizons supérieurs du karst : épikarst et zone d'infiltration. Une forte hétérogénéité spatiale des variations de stockage est aussi mise en évidence à l'échelle du bassin d'alimentation. Les mesures inclinométriques permettent de suivre les phénomènes d'infiltration rapide et lente dans la masse karstique fracturée. Le suivi géodésique de ce système karstique permet d'apprécier quantitativement et de façon intégrée son fonctionnement hydrologique et pourra être transposé pour l'étude d'autres aquifère karstiques.
https://tel.archives-ouvertes.fr/tel-00404851

tel-00404851
https://tel.archives-ouvertes.fr/tel-00404851
https://tel.archives-ouvertes.fr/tel-00404851/document
https://tel.archives-ouvertes.fr/tel-00404851/file/THESE_jacob.pdf

Éditeur(s) : HAL CCSD
Résumé : The forests of French Guiana occupy a central part of the region’s potential resource base, but as yet remain almost completely unexploited. This stems from the forestry industry struggling to valorize wood stocks of a high diversity with an extremely heterogeneous distribution. Indeed, identifying essences for future propagation is an issue of both environmental and socio-economic importance for the region. Bagassa guianensis Aubl. and Cordia alliodora (Ruiz & Pav.) Oken. go against conventional models, in that they display the life history characteristics of rapid growth and wood of high quality, and thus are species of high potential for future plantations. Firstly, our study of growth characteristics reveals a defined strategy half way between long-lived species and pioneer species. It is the variability of basic density of wood which is a key trait allowing for such a development, favoring rapid growth in initial years whilst allowing for tree longevity. Secondly, the analysis of a range of wood properties (shrinkage, modulus of elasticity, durability) in relation to tree growth confirms the technologic quality of the two species. It also enables the emergence of new results like the effect of extractives on wood stability, the control of growth as a result of basic density variation, the evolution of leaf traits throughout tree development or the improvement of trunk maintenance thanks to interlocked grain. The knowledge gained in relation to the developmental traits of these two species, and to the quality of their wood allows for the elaboration of plantation projects and what will be required for their success. The results of this study can orientate future studies on novel species for commercialization in French Guiana.
La ressource forestière en Guyane occupe une place maîtresse au sein de la région et est encore majoritairement préservée, mais la filière bois parvient difficilement à valoriser la biodiversité locale en raison de l’hétérogénéité de la ressource. Identifier les essences à planter demain représente aujourd’hui un enjeu à la fois environnemental, économique et social pour la Guyane. Bagassa guianensis Aubl. et Cordia alliodora (Ruiz & Pav.) Oken. vont à l’encontre des modèles usuels en associant vitesse de croissance et qualité du bois et sont identifiées comme prometteuses pour la plantation. Dans un premier temps, l’étude de la dynamique de croissance des deux espèces révèle un modèle écologique singulier, à la fois pionnières et longévives. La variabilité de l’infradensité dans l’arbre est l’élément clé qui permet un tel développement, favorisant une croissance rapide dans les premières années tout en assurant la longévité de l’individu. Dans une seconde partie, l’analyse d’un large panel de propriétés du bois (retrait, module, durabilité) en lien avec le développement de l’arbre confirme les qualités technologiques des deux espèces et permet l’émergence de résultats novateurs tels que le rôle des extractibles sur le retrait, le contrôle de la croissance grâce aux variations d’infradensité, l’évolution des traits foliaires au cours de l’ontogénie ou encore la mise en place de contrefil dans l’arbre pour assurer son maintien. La connaissance acquise vis-à-vis du mode de développement de ces deux espèces et des facteurs influençant la qualité de leur bois permet aujourd’hui de définir avec plus de précision le cadre d’un projet de plantation et les conditions de son succès. Les résultats de cette étude permettent finalement d’orienter la recherche de nouvelles espèces d’avenir pour la plantation en Guyane.
https://tel.archives-ouvertes.fr/tel-01338281

tel-01338281
https://tel.archives-ouvertes.fr/tel-01338281
https://tel.archives-ouvertes.fr/tel-01338281/document
https://tel.archives-ouvertes.fr/tel-01338281/file/Th%C3%A8se%20Julie%20Bossu.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Background and AimsEpiphytism imposes physiological constraints resulting from the lack of access to the nutrient sources available to ground-rooted plants. A conspicuous adaptation in response to that lack is the phytotelm (plant-held waters) of tank-bromeliad species that are often nutrient-rich. Associations with terrestrial invertebrates also result in higher plant nutrient acquisition. Assuming that tank-bromeliads rely on reservoir-assisted nutrition, it was hypothesized that the dual association with mutualistic ants and the phytotelm food web provides greater nutritional benefits to the plant compared with those bromeliads involved in only one of these two associations.MethodsQuantitative (water volume, amount of fine particulate organic matter, predator/prey ratio, algal density) and qualitative variables (ant-association and photosynthetic pathways) were compared for eight tank- and one tankless-bromeliad morphospecies from French Guiana. An analysis was also made of which of these variables affect nitrogen acquisition (leaf N and δ(15)N).Key ResultsAll variables were significantly different between tank-bromeliad species. Leaf N concentrations and leaf δ(15)N were both positively correlated with the presence of mutualistic ants. The amount of fine particulate organic matter and predator/prey ratio had a positive and negative effect on leaf δ(15)N, respectively. Water volume was positively correlated with leaf N concentration whereas algal density was negatively correlated. Finally, the photosynthetic pathway (C3 vs. CAM) was positively correlated with leaf N concentration with a slightly higher N concentration for C3-Tillandsioideae compared with CAM-Bromelioideae.ConclusionsThe study suggests that some of the differences in N nutrition between bromeliad species can be explained by the presence of mutualistic ants. From a nutritional standpoint, it is more advantageous for a bromeliad to use myrmecotrophy via its roots than to use carnivory via its tank. The results highlight a gap in our knowledge of the reciprocal interactions between bromeliads and the various trophic levels (from bacteria to large metazoan predators) that intervene in reservoir-assisted nutrition.
ISSN: 0305-7364

hal-00849045
https://hal.archives-ouvertes.fr/hal-00849045
DOI : 10.1093/aob/mct147
PUBMED : 23864002

Éditeur(s) : HAL CCSD Elsevier
Résumé : The Gulf of Aigues-Mortes (NW Mediterranean Sea) is a midshelf zone whose scale is an intermediate between the nearshore scale (0–10 m depth) and the coastal scale (including the whole continental shelf). Its hydrodynamics is investigated for the first time. ADCP, CTD and thermosalinograph data were collected during three short cruises (HYGAM; March 6–7, 20–21, April 5–6, 2005). They were scheduled approximately every 15 days to sample the gulf circulation under different weather conditions. Moreover, the cruise data were used to validate the Symphonie model, a 3D primitive equations circulation model. The circulation features displayed by in situ data were well reproduced by Symphonie. A downscaling modelling approach was implemented, the largest scale being obtained by the replay of the MFSTEP regional model of the North-Western Mediterranean Sea. The analysis, closely coupling in situ measurements and model results, provides information that would not have been obtained using data separately. The great variability of the oceanic circulation at this scale is well evidenced. Winds are the main forces, not only locally but also at a larger scale. North winds generate coherent structures interacting with the general Mediterranean circulation. The explanation of the induced currents is then not straightforward, some of them being, for example, northward. South and southeast winds reinforce the sloping surface, the latter allowing the geostrophic equilibrium with longshore currents. This study, focused on the end of winter 2004–2005, also enhances the heat fluxes from offshore to nearshore, as well as the initiation of shelf dense waters. The knowledge of the midshelf oceanic circulation is then applied to run a numerical experiment which describes both the dispersion of a fictive contaminant from a point S (at the centre of the GAM), and evaluates the risk of contamination of the beaches along the GAM shores.
ISSN: 0278-4343

hal-00196620
https://hal.archives-ouvertes.fr/hal-00196620
DOI : 10.1016/j.csr.2007.06.006

Éditeur(s) : HAL CCSD
Résumé : International audience
The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification.Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines.The electronic key is accessible with the free access software Xper², and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf
ISSN: 1314-2011

hal-01392306
https://hal-sde.archives-ouvertes.fr/hal-01392306
DOI : 10.3897/phytokeys.68.8707

Éditeur(s) : HAL CCSD University Centre for E-Learning,
Résumé : The article presents the results of a French-Bulgarian study of the professional competencies of the teachers. The authors analyse only one aspect of these competences, namely their conceptions on the development and education of pupils. The article looks for the answer to the question which psychological and pedagogical theories can explain the teachers’ perceptions of professional competence, trained in two different educational philosophies and systems. It reaches conclusions that confidence in the professional knowledge, skills and competencies of Bulgarian teachers are more independent in comparison with the perceptions of their French colleagues.
ISSN: 1314-0086

hal-01532820
https://hal.univ-antilles.fr/hal-01532820

Éditeur(s) : HAL CCSD
Résumé : LPSC14037
Scientific data collected with modern sensors or dedicated detectors exceed very often the perimeter of the initial scientific design. These data are obtained more and more frequently with large material and human efforts. A large class of scientific experiments are in fact unique because of their large scale, with very small chances to be repeated and to superseded by new experiments in the same domain: for instance high energy physics and astrophysics experiments involve multi-annual developments and a simple duplication of efforts in order to reproduce old data is simply not affordable. Other scientific experiments are in fact unique by nature: earth science, medical sciences etc. since the collected data is "time-stamped" and thereby non-reproducible by new experiments or observations. In addition, scientific data collection increased dramatically in the recent years, participating to the so-called "data deluge" and inviting for common reflection in the context of "big data" investigations. The new knowledge obtained using these data should be preserved long term such that the access and the re-use are made possible and lead to an enhancement of the initial investment. Data observatories, based on open access policies and coupled with multi-disciplinary techniques for indexing and mining may lead to truly new paradigms in science. It is therefore of outmost importance to pursue a coherent and vigorous approach to preserve the scientific data at long term. The preservation remains nevertheless a challenge due to the complexity of the data structure, the fragility of the custom-made software environments as well as the lack of rigorous approaches in workflows and algorithms. To address this challenge, the PREDON project has been initiated in France in 2012 within the MASTODONS program: a Big Data scientific challenge, initiated and supported by the Interdisciplinary Mission of the National Centre for Scientific Research (CNRS). PREDON is a study group formed by researchers from different disciplines and institutes. Several meetings and workshops lead to a rich exchange in ideas, paradigms and methods. The present document includes contributions of the participants to the PREDON Study Group, as well as invited papers, related to the scientific case, methodology and technology. This document should be read as a "facts finding" resource pointing to a concrete and significant scientific interest for long term research data preservation, as well as to cutting edge methods and technologies to achieve this goal. A sustained, coherent and long term action in the area of scientific data preservation would be highly beneficial.
http://hal.in2p3.fr/in2p3-00959072

in2p3-00959072
http://hal.in2p3.fr/in2p3-00959072
http://hal.in2p3.fr/in2p3-00959072/document
http://hal.in2p3.fr/in2p3-00959072/file/PREDON_Scientific_Data_Preservation_2014.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Tuftelin (TUFT1) is an acidic, phosphorylated glycoprotein, initially discovered in developing enamel matrix. TUFT1 is expressed in many mineralized and non-mineralized tissues. We performed an evolutionary analysis of 82 mammalian TUFT1 sequences to identify residues and motifs that were conserved during 220 million years (Ma) of evolution. We showed that 168 residues (out of the 390 residues composing the human TUFT1 sequence) are under purifying selection. Our analyses identified several, new, putatively functional domains and confirmed previously described functional domains, such as the TIP39 interaction domain, which correlates with nuclear localization of the TUFT1 protein, that was demonstrated in several tissues. We also identified several sites under positive selection, which could indicate evolutionary changes possibly related to the functional diversification of TUFT1 during evolution in some lineages. We discovered that TUFT1 and MYZAP (myocardial zonula adherens protein) share a common ancestor that was duplicated circa 500 million years ago. Taken together, these findings expand our knowledge of TUFT1 evolution and provide new information that will be useful for further investigation of TUFT1 functions.
ISSN: 0022-2844

hal-01516886
http://hal.upmc.fr/hal-01516886
http://hal.upmc.fr/hal-01516886/document
http://hal.upmc.fr/hal-01516886/file/Delgado_2017_Evolutionary.pdf
DOI : 10.1007/s00239-017-9789-5

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
In order to ensure a sustainable management of reef fisheries, data need to be collected regularly on the effect of these fisheries on both fish resources and the ecosystems that sustain them. Habitat and resources monitoring programs can provide such information, but are difficult to implement as they involve a range of technical, financial and human resources. Regarding these problems, the involvement of the local population in monitoring programs, called participatory monitoring, seems to offer solutions. Indeed, participatory monitoring has the potential of increasing the number of data collected at low cost, while taking advantage of the traditional ecological knowledge available locally. Some questions need clarifying, however: which methods can bring relevant information for the monitoring of reef fisheries while being appropriate to the motivations and skills of the local population? Is the degree of participation of the local population sufficient to make the monitoring program work, particularly over the long term? To answer these questions, participatory monitoring methods commonly used for coral reef ecosystems have been implemented to assess reef fisheries at three different sites: Moorea island and Tikehau atoll in French Polynesia, and the Bay of Tulear in Madagascar. While highlighting the relevance of some participatory monitoring programs for snapshot and large-scale surveys, the results of this study also show their lesser interest for regular data gathering on long-time scales. In any case, strong coordination and supervision by scientists are considered essential.
La gestion durable des écosystèmes coralliens nécessite de disposer d’informations régulières concernant l’impact des pêcheries sur les ressources récifales et sur les écosystèmes dont elles dépendent. Les suivis intégrés des ressources, des habitats et des espèces associées qui visent à fournir ce type d’informations sont difficiles à mettre en œuvre, car ils impliquent de nombreuses ressources humaines, techniques et financières. Face à ces problèmes, la participation de la société civile dans les programmes de suivi semble en mesure d’apporter des solutions. Dans le but de tester cette hypothèse, des méthodes de suivi participatif ont été mises en œuvre afin de caractériser des pêcheries récifales sur trois socio-écosystèmes contrastés : l’île de Moorea et l’atoll de Tikehau en Polynésie française, et le littoral de Tuléar à Madagascar. Les résultats de cette étude soulignent la pertinence de certains suivis participatifs pour fournir une vision écosystémique dans le cas de collecte de données ponctuelles et de large envergure, et leur intérêt moindre pour la collecte continue de données sur de longues échelles de temps. Dans tous les cas, une structure de coordination et l’implication de scientifiques s’avèrent primordiales pour assurer pérennité et fiabilité au système de suivi.
ISSN: 1240-1307

hal-01302983
https://hal-univ-perp.archives-ouvertes.fr/hal-01302983
DOI : 10.1051/nss/2013109

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers
Résumé : International audience
Tailoring nearest neighbors algorithms to boosting is an important problem. Recent papers study an approach, UNN, which provably minimizes particular convex surrogates under weak assumptions. However, numerical issues make it necessary to experimentally tweak parts of the UNN algorithm, at the possible expense of the algorithm's convergence and performance. In this paper, we propose a lightweight alternative algorithm optimizing proper scoring rules from a very broad set, and establish formal convergence rates under the boosting framework that surprisingly compete with those known for UNN. It is an adaptive Newton-Raphson algorithm, which belongs to the same lineage as the popular Gentle Adaboost. To the best of our knowledge, no such boosting-compliant convergence rates were previously known for these algorithms. We provide experiments on a dozen domains, including the challenging Caltech and SUN computer vision databases. They display that GNNB significantly outperforms UNN, both in terms of convergence rate and quality of the solution obtained, and GNNB provides a simple and efficient contender to techniques that can be used on very large domains, like stochastic gradient descent -- for which little is known to date. Experiments include a divide-and-conquer improvement of GNNB which exploits the link with proper scoring rules optimization.
ISSN: 0162-8828

hal-00958809
https://hal.archives-ouvertes.fr/hal-00958809
https://hal.archives-ouvertes.fr/hal-00958809/document
https://hal.archives-ouvertes.fr/hal-00958809/file/PAMI.pdf
DOI : 10.1109/TPAMI.2014.2307877

Éditeur(s) : HAL CCSD
Résumé : Designing biodiversity conservation plans requires knowledge on the biogeographic distribution of taxabut also accurate estimates of species richness and diversification processes. However, measuring the phyleticrichness can be biased by the use of inappropriate taxonomical characters, leading to erroneous speciesdelimitation and diversity estimates.This work explores the phyletic richness at several taxonomic levels (generic, specific and intraspecific) ofthe hydrozoan family Aglaopheniidae (Marktanner-Turneretscher, 1890), with a particular focus on the South-Western Indian Ocean. Firstly, using several newly constructed phylogenies based on mitochondrial andnuclear markers, this study reveals that the phyletic diversity of this family is at underestimated by at least 50%:all studied genera are polyphyletic or with doubtful monophyletic status. Then, using several speciesdelimitation methods based on molecular markers, it sheds light on the richness of cryptic diversity of thisfamily, enlightening the potential of using an integrative taxonomic approach on these morphologically simpleorganisms. Finally, the population genetics of an Aglaopheniidae brooding species shows a high populationsstructuring with pervasive pattern of isolation by distance at several geographic scales (several to thousands ofkilometres), implying a potentially high cryptic diversity existing in this family.The results of this work provide new insights on Aglaopheniidae diversity, underlining the potentialinfluence of reproductive mode on the phyletic diversity and diversification processes of brooding hydrozoanbrooders. This thesis further highlights the relevance of using several complementary
La conservation et la gestion sur le long terme de la biodiversité nécessitent une connaissance de larépartition des taxons, mais également une estimation précise de leur diversité spécifique ainsi que desprocessus de spéciation ayant permis leur formation. Cependant, la mesure de la richesse phylétique peut êtrebiaisée par l’utilisation de caractères taxinomiques ne permettant pas de délimiter les espèces de manièreappropriée.Ce travail de thèse propose d’explorer la diversité phylétique à plusieurs niveaux taxinomiques(générique, spécifique et intra-spécifique) des Aglaopheniidae, une famille d’hydrozoaires, notamment présentedans le Sud-Ouest de l’océan Indien. Dans un premier temps, en utilisant des phylogénies basées sur plusieursmarqueurs (mitochondriaux et nucléaires), ce travail démontre que la diversité phylétique de cette famille est,au minimum, sous-estimée de moitié: tous les genres de la famille sont polyphyléthiques ou présentent un statutmonophylétique restant à confirmer. Dans un deuxième temps, l’utilisation de méthodes de délimitationd’espèces basées sur des données moléculaires met en évidence la diversité cryptique très élevée des morphoespècesétudiées, révélant l’intérêt potentiel des protocoles de taxinomie intégrative chez les organismesmorphologiquement simples. Enfin, l’étude de génétique des populations d’une espèce incubatriced’Aglaopheniidae révèle l’importance de la structuration des populations et de l’isolement par la distance chezcette espèce à plusieurs échelles géographiques (de quelques kilomètres à plusieurs milliers), impliquant unepotentielle diversité cryptique extrêmement élevée chez cette famille.L’ensemble des connaissances acquises lors de ce travail de thèse fournit un nouveau regard sur ladiversité de la famille des Aglaopheniidae, soulignant le potentiel impact du cycle de reproduction sur ladiversité phylétique et les processus de spéciation des hydrozoaires incubateurs. Cette thèse met en évidence lapertinence de l’utilisation de plusieurs procédures complémentaires de délimitation d’espèces pour étudier ladiversité des organismes morphologiquement simples.
https://hal.archives-ouvertes.fr/tel-01359424

tel-01359424
https://hal.archives-ouvertes.fr/tel-01359424
https://hal.archives-ouvertes.fr/tel-01359424/document
https://hal.archives-ouvertes.fr/tel-01359424/file/These%20manuscrit%20final.pdf

Éditeur(s) : HAL CCSD Laboratoire Arago
Résumé : International audience
As it is unlikely that successful settlement is solely a matter of chance (i.e. tofind a suitable habitat), one of the greatest challenges facing the fish larvae is how to locate therelatively rare patches of coral reef habitat on which they settle and ultimately reside as adults.The answer must lie partly in the sensory modalities of fishes at settlement. Habitat selection isonly possible if fish larvae could detect some environmental cues to select a suitable reef habitatat settlement. The present review aims at providing the latest works dealing with informationperception in coral reef fish larvae at settlement. Two decades ago, it was generally assumedthat larval behaviors and sensory abilities at settlement were considered too feeble to significantlyaffect dispersal outcomes. Several recent studies showed that recognition of suitable reefhabitats by fish larvae at settlement is based on a combination of visual, chemical and acousticcues. The first part of our review shows the main advances in the knowledge of visual, chemicaland acoustic cues used by fish larvae to detect an island, a reef, a micro-habitat, a conspecific orsome predators. The second part of our review deals with the effect of imprinting and/or innatecapabilities. The third part focuses on the different cues used at different scales and underlinessome contradictory results about the distance of transmission and detection of chemical andacoustic cues in coral reefs. Finally, as global and regional environmental changes have stressedcoral reefs to such an extent that they are either destroyed or in decline, the fourth part presentsthe effects of both anthropogenic and environmental stressors on information perception andresponse capacities in coral reef fish larvae. If polluted seawater disrupts the larval abilities tofind a suitable reef habitat, fish larvae may spend more time in the planktonic environment,resulting in increased energetic costs and predation risk, and consequently a lower larval settlement.We hypothesise that as the stability of fish communities is dependent, in part, on the stabilityof social interactions, the disruption of “larvae-habitat relationships” can have major consequencesfor larval settlement into adult population with further repercussions for the ecosystemas a whole. Overall, larval settlement of coral reef fish is an excellent example of the complexityof interactions between an organism and its environment as without perceiving environmentalcues, fish larva would have very little chance of selecting a suitable reef habitat. Moreover,understanding the relationship between reef state and settlement potential will allow managementplanning for the maintenance of coral reefs that are increasingly degraded.
ISSN: 0240-8759

hal-01191776
https://hal-univ-perp.archives-ouvertes.fr/hal-01191776

Éditeur(s) : Elsevier
Résumé : Clinoforms on modern shelves and slopes, as well as in ancient rock records, are widely recognized as a fundamental building element of continental margin growth. Regardless of their dominant lithology, clinoforms are composed of three geometric elements: topset, foreset and bottomset. Traditionally, much emphasis in the study of clinoforms was put on the geometry of the topset, viewed as the most energetic portion of a clinoform and studied to discern if aggradation was active rather than erosional truncation, and on the foreset, the area with the highest sediment accumulation rates. Here we focus on the factors forcing clinoforms to taper out and on the inferred mechanisms for bottomset creation. We base our analysis on muddy shelf clinoforms, a particular class of clinoforms that is typical of low-gradient settings and is characterized by a substantial component of shore-parallel sediment transport. This paper is based on a large dataset of CHIRP-sonar profiles, bathymetric and isopach maps of the Late Holocene clinoform on the Adriatic shelf, where integrated stratigraphic studies from sediment cores allow a very high (in some cases century-scale) chronological resolution. Knowledge on the dominant oceanographic regime affecting sediment dispersal and, ultimately, clinoform development, has been recently refined during the EuroSTRATAFORM collaboration. Muddy clinoforms are markedly three-dimensional features that cannot be entirely understood solely on two-dimensional shore normal sections. We suggest that this class of clinoform is advection dominated and that an increase in the energy regime at the toe of the foreset may prevent sediment from reaching beyond the transition to the bottomset region.
Continental Shelf Research (0278-4343) (Elsevier), 2007-02 , Vol. 27 , N. 3-4 , P. 506-525

Droits : 2006 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2007/publication-2409.pdf
DOI:10.1016/j.csr.2006.11.013
http://archimer.ifremer.fr/doc/00000/2409/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : L’incendie de forêt reste incontestablement un des facteurs de dégradation les plus dévastateurs dans le bassin méditerranéen, lequel est caractérisé par une végétation très inflammable et des conditions climatiques chaudes et sèches. Le Maroc, pays du pourtour méditerranéen, n’est pas épargné par ce fléau, avec 3000 ha de forêts qui partent annuellement en fumée ; cette situation est aggravée par les difficultés de régénération et de restauration des espaces, marqués par une vulnérabilité naturelle telle que celle de la Mâamora. Pour répondre à cela, la conception d’un plan d’aménagement anti-feux visant à conférer à la forêt de la Mâamora une immunité élevée contre les incendies, nécessite non seulement une connaissance approfondie du milieu, mais aussi une analyse appropriée du phénomène « incendie ». La présente étude qui se penche sur le diagnostic et l’analyse des incendies survenus en Mâamora, a permis de constater que les zones d’interface homme-forêt (routes, douars, etc.) n’ont pas d’influence sur l’occurrence des incendies. Il ressort également que l’activité pastorale, pratiquée d’une certaine façon, pourrait jouer un rôle important dans la diminution des risques d’incendie. En outre l’étude révèle que la charge du combustible représente le facteur prépondérant qui régit à la fois l’éclosion des incendies et leur propagation, cette charge étant étroitement liée à la qualité de la station (sol et pluviométrie).
Forest fires are the main disturbance and the degradation factor most devastating that can affect forested areas, especially in the Mediterranean basin when species are highly flammable and climate conditions are marginal. Morocco as a Mediterranean country is not spared from this phenomenon, thus 3000 ha of forest are burned every year, and this situation is aggravated by the low rate of regeneration and restoration of the unbalanced ecosystems such as the Mâamora. To mitigate this situation, the establishment of an effective management plan for forest fire prevention requires not only an intimate knowledge of environment but also a perfect analysis of fire phenomenon. Therefore in this study, we focused our diagnosis on the analysis of old fires occurred in the past in Mâamora forest. The study highlighted that human-forest interface areas (roads, villages) have no influence on fires occurrence. Besides it was shown that grazing practiced in a well-balanced way, could play a key role in reducing fire hazards. In addition the study reveals that fuel load of is the major factor that governs both fire ignition and fire spread of, this load is closely related to site quality (soil and rainfall)
Maroc

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10978
http://journals.openedition.org/etudescaribeennes/10978