Éditeur(s) : The Royal Society
Résumé : One of the most ubiquitous and long-lasting recent changes to the surface of our planet is the accumulation and fragmentation of plastics. Within just a few decades since mass production of plastic products commenced in the 1950s, plastic debris has accumulated in terrestrial environments, in the open ocean, on shorelines of even the most remote islands and in the deep sea. Annual clean-up operations, costing millions of pounds sterling, are now organized in many countries and on every continent. Here we document global plastics production and the accumulation of plastic waste. While plastics typically constitute approximately 10 per cent of discarded waste, they represent a much greater proportion of the debris accumulating on shorelines. Mega- and macro-plastics have accumulated in the highest densities in the Northern Hemisphere, adjacent to urban centres, in enclosed seas and at water convergences ( fronts). We report lower densities on remote island shores, on the continental shelf seabed and the lowest densities (but still a documented presence) in the deep sea and Southern Ocean. The longevity of plastic is estimated to be hundreds to thousands of years, but is likely to be far longer in deep sea and non-surface polar environments. Plastic debris poses considerable threat by choking and starving wildlife, distributing non-native and potentially harmful organisms, absorbing toxic chemicals and degrading to micro-plastics that may subsequently be ingested. Well-established annual surveys on coasts and at sea have shown that trends in mega- and macro-plastic accumulation rates are no longer uniformly increasing: rather stable, increasing and decreasing trends have all been reported. The average size of plastic particles in the environment seems to be decreasing, and the abundance and global distribution of micro-plastic fragments have increased over the last few decades. However, the environmental consequences of such microscopic debris are still poorly understood.
Philosophical Transactions of the Royal Society B (0962-8436) (The Royal Society), 2009-07 , Vol. 364 , N. 1526 , P. 1985-1998

Droits : The Royal Society 2009
http://archimer.ifremer.fr/doc/2009/publication-6952.pdf
DOI:10.1098/rstb.2008.0205
http://archimer.ifremer.fr/doc/00000/6952/

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
The Lanzo peridotite massif is a fragment of oceanic lithosphere generated in an ocean-continent transition context and eclogitized during alpine collision. Despite the subduction history, the massif has preserved its sedimentary oceanic cover, suggesting that it may have preserved its oceanic structure. It is an exceptional case for studying the evolution of a fragment of the lithosphere from its oceanization to its subduction and then exhumation. We present a field and petrological study retracing the different serpentinization episodes and their impact on the massif structure. The Lanzo massif is composed of slightly serpentinized peridotites (<20% serpentinization) surrounded by an envelope of foliated serpentinites (100% serpentinization) bordered by oceanic metabasalts and metasedimentary rocks. The limit between peridotites and serpentinites defines the front of serpentinization. This limit is sharp: it is marked by the presence of massive serpentinites (80% serpentinization) and, locally, by dykes of metagabbros and mylonitic gabbros. The deformation of these gabbros is contemporaneous with the emplacement of the magma. The presence of early lizardite in the peridotites testifies that serpentinization began during the oceanization, which is confirmed by the presence of meta-ophicarbonates bordering the foliated serpentinite envelope. Two additional generations of serpentine occur in the ultramafic rocks. The first is a prograde antigorite that partially replaced the lizardite and the relict primary minerals of the peridotite during subduction, indicating that serpentinization is an active process at the ridge and in the subduction zone. Locally, this episode is followed by the deserpentinization of antigorite at peak P-T (estimated in eclogitized metagabbros at 2-2.5 GPa and 550-620 °C): it is marked by the crystallization of secondary olivine associated with chlorite and/or antigorite and of clinopyroxene, amphibole and chlorite assemblages. A second antigorite formed during exhumation partially to completely obliterating previous textures in the massive and foliated serpentinites. Serpentinites are an important component of the oceanic lithosphere generated in slow to ultraslow spreading settings, and in these settings, there is a serpentinization gradient with depth in the upper mantle. The seismic Moho limit could correspond to a serpentinization front affecting the mantle. This partially serpentinized zone constitutes a less competent level where, during subduction and exhumation, deformation and fluid circulation are localized. In this zone, the reaction kinetics are increased and the later steps of serpentinization obliterate the evidence of this progressive zone of serpentinization. In the Lanzo massif, this zone fully recrystallized into serpentinite during alpine subduction and collision. Thus, the serpentinite envelope represents the oceanic crust as defined by geophysicists, and the sharp front of serpentinization corresponds to an eclogitized seismic palaeo-Moho.
ISSN: 0263-4929

hal-00823051
https://hal.archives-ouvertes.fr/hal-00823051
DOI : 10.1111/jmg.12008

Éditeur(s) : Université de Montpellier II
Résumé : Penaeid family shrimp constitute the first aquaculture product in the world in terms of commercial value. They are produced in third world countries of the sub-equatorial belt. Among the causes limiting their production, one is the presence of the WSSV (White Spot Syndrome Virus), a pathogenic agent that produces massive mortality. Our aim was to investigate the first stages of the viral infection, in order to be used as target of prophylactic actions. A fish cell line (SSN-1) was used as model to tentatively develop in vitro studies. Only defective particles were produced confirming the high specificity to crustacea of the infection with crustacean virus. Electron microscopy showed structural similarities between the WSSV and B, B2 and Baculo-B viruses of crabs. This suggests B2 may belong also to the family Nimaviridae, genus Whispovirus. This comparison with B2 virus gives the possibility to understand the role played by the tail-like extension of these viruses in the infectious process by attachment to the plasmic membrane at the beginning of the infection in its specific host.
Les crevettes de grande taille de la famille des Penaeidae constituent le premier produit aquacole en valeur commerciale à l'échelle planétaire. Elles sont produites à 99% dans les pays en voie de développement de la ceinture sub-équatoriale. Parmi les causes limitant leur production, le White Spot Syndrome Virus est l'agent pathogène ayant provoqué le plus des pertes dans le monde. Notre étude a été orientée vers la reconnaissance des premiers stades de l'infection, susceptibles d'être la cible d'une action prophylactique. Nous avons testé l'utilisation d'une lignée cellulaire de poisson SSN-1 afin d'étudier les possibilités d'un développement in vitro. Seules des particules défectives ont été produites confirmant la haute spécificité des infections à virus de crustacés. Les recherches en microscopie électronique ont montré une similarité structurale du WSSV avec les virus (B, B2 et Baculo-B) des crabes. Ceci suggère que ces agents (B2 et WSSV) seraient tout deux de la famille des Nimaviridae et du genre Whispovirus. La comparaison avec le virus B2 permet de comprendre le rôle clef joué par la partie caudale de ces virus dans l'infection par son attachement à la membrane plasmique lors de l'infection chez son hôte spécifique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6650.pdf
http://archimer.ifremer.fr/doc/00000/6650/

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Resistance to artemisinin casts a shadow on the fight against malaria. The importance of illegal gold miners and of malaria in isolated regions of French Guiana constitutes a threat that endangers the fight against malaria in the Amazon. The hurdles of French laws and the remoteness of the territory from France make it impossible for the system to adapt to the problem of total inaccessibility of an important part of the malaria problem. Transmission is high in these areas and gold miners self-medicate with erratic regimens of artemisinin combinations, thus creating perfect conditions for the emergence of resistance. What needs to be done is being done, but within the limits of national law, with some results. However, facing the same difficult problem, Suriname shows more flexibility and is doing much better than French Guiana despite having lower resources. Local authorities in French Guiana cannot overrule the laws that block appropriate malaria care from reaching a third of malaria-exposed persons. Thus the health authorities in France should take immediate calibrated legislative and financial measures to avoid a predictable disaster.
ISSN: 1475-2875

inserm-00838961
http://www.hal.inserm.fr/inserm-00838961
http://www.hal.inserm.fr/inserm-00838961/document
http://www.hal.inserm.fr/inserm-00838961/file/Nacher_et_al._Malaria_J.pdf
PUBMED : 23641802

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Zandjan province is situated in the NW of Iran, at the junction between the southern termination of the Tabriz right-lateral strike-slip fault and the western end of the Alborz active mountain range. Despite this key location, in terms of active tectonics, there is no destructive earthquake reported in available historical seismicity catalogues. Even if a few low magnitude instrumental earthquakes have been recorded indicating that this area is actively deforming, the Zandjan region can be considered as a seismic gap. Based on detailed field investigations, digital elevation models (DEMs), satellite image and aerial photo interpretations, we have identified a major active fault network affecting this regions. It is mainly constituted by several west and est verging thrust faults, trending NW-SE to N-S, that clearly cut Late Quaternary to Holocene deposits. Evidences in the morphology indicate also that they accommodate some right-lateral slip component. This fault network can be divided into four major fault zones affecting Zandjan city (present day population over 500,000) and part of the Zandjan-Mianeh basin more to the west. Based on fault geometrical characteristics (fault length, segmentation ... ) and kinematics, the Zandjan fault system is certainly capable to produce moderate to large earthquakes (Mw = 6.5-7.0) and serious damages in the Zandjan city and surrounding areas. The study of these faults is, then, of major interest for seismic hazard assessment in Zandjan province where total population exceed 1.5 million but also to better understand present day geodynamic of NW Iran.
ISSN: 0040-1951

hal-00617526
https://hal.archives-ouvertes.fr/hal-00617526
DOI : 10.1016/j.tecto.2011.04.012

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
The Calabro-Peloritan belt constitutes the eastward termination of the southern segment of the Alpine Mediterranean belt. This orogenic system was built up during the convergence between the Eurasian and the African plates, roughly directed North-South since the Upper Cretaceous. It was subsequently fragmented during the opening of the Western Mediterranean basins since Oligocene times. The curved shape of the Calabro-Peloritan belt was acquired during the opening of the Tyrrhenian basin since Tortonian. The origin, kinematics and significance of the Calabro-Peloritan tectonic pile are still debated. Our data in the Aspromonte Massif of Southern Calabria reveal an Alpine history marked by two main superimposed kinematic regimes. (i) A first phase corresponds to the piling up of basement nappes with a top-to-the-SE vergence, i.e in a direction orthogonal to the belt trend and towards the Adriatic foreland. This external vergence is similar to what is observed in both Northeastern Sicily and Northern Calabria. In Sicily, the age of nappe piling is Alpine, as evidenced by pinched slices of Mesozoïc sediments. In the Aspromonte Massif, thrusting age is less constrained. Our data suggest remnants of late Hercynian structuration before the Alpine stacking. (ii) A second phase corresponds to the thinning of the continental crust, dated at around 30 Ma by both geochronological and stratigraphical data. This extension is mainly localized on two low-angle detachment contacts, with top-to-the-NE displacement. The lower one corresponds to the reworking of the former main nappe contact. The upper one is a large detachment fault cutting across the pile from upper sedimentary levels down to metamorphic basement. Extension of similar Alpine age and similar internal vergence has been already recognized in other parts of the Calabro-Peloritan Arc: in the basement nappes of Northeastern Sicily and in the ophiolitic units of Northern Calabria. Coming back to the original geometry and position of the Calabro-Peloritan belt, before its bending and the opening of the Liguro-Provençal and Tyrrhenian basins, we evidence a homogeneous Oligocene NE-SW extension all along the Calabro-Peloritan segment of the Alpine Mediterranean belt. This tectonometamorphic history is best explained within the framework of the continuous Tertiary westward dipping subduction of the Tethyan oceanic domain below the European active margin and the progressive eastward retreat of the Apennine trench since Oligocene times.
ISSN: 0278-7407

hal-00283182
https://hal.archives-ouvertes.fr/hal-00283182
https://hal.archives-ouvertes.fr/hal-00283182/document
https://hal.archives-ouvertes.fr/hal-00283182/file/Heymes_et_al_2008.pdf
DOI : 10.1029/2007TC002157

Résumé : This study aims to integrate the problems associated with port development and related activities in an economic monitoring programme that surveys all the activities associated with the marine environment. The economic monitoring programme in this sector also includes studying coastal spatial planning. This type of study concerns the creation and remodelling of sites that involve investments. We can consider two types of coastal spatial planning: one which integrates port development, tourism, aquaculture and fisheries and one that deals with the marine environment (Abric, 1989). Economic surveys of port development on French coasts supposes that the problem of identifying information sources have been resolved and the sectors and the activities that should be accounted for have been characterised. In what follows, the limits of available information and the problems pertaining to the proposed classification of activities according to statistical nomenclature will be discussed. The absence of structured and localised data is aggravated in certain cases by the rules of confidentiality. In light of these difficulties, the first part of this report is devoted to the inventory of general information sources and to the characterisation of existing data. As information forms the basis of any economic monitoring programme, it is necessary to know where, how and by whom information is processed and the limits that one comes up against. This report does not pretend to be exhaustive given the deadlines and the duration of this study. The second part of this report constitutes a summary of the recent trends discerned in terms of port development, from a legal, as well as economic and financial, point of view. This study should be considered as the first step to establishing a basis for a more in-depth study.
Cette étude a pour but d'intégrer les problèmes d'aménagement portuaire et les activités qui y sont liées dans un suivi conjoncturel de l'ensemble des activités économiques en relation avec le milieu maritime. Le suivi conjoncturel de ce secteur économique passe aussi par l'étude de l'aménagement physique du littoral. Celui-ci concerne la création et le remodelage de sites impliquant des investissements. On peut considérer deux types d'aménagements physiques -l'aménagement du littoral : portuaire, touristique, aquacole, halieutique; -l'aménagement du mineur marin (Abric, 1989). Un suivi conjoncturel de l'aménagement portuaire du littoral français, suppose en préalable la résolution du problème de l'identification des sources d'information et la caractérisation des secteurs et activités en prendre en compte. On verra par la suite les limites de l'information disponible et les problèmes afférents a la classification des activités selon les nomenclatures statistiques proposées. L'absence de données structurées et localisées est aggravée dans certains cas par des règles de confidentialité. Du fait de ces difficultés, la première partie de ce rapport est consacrée au recensement des sources d'information générale et à la caractérisation des données existantes. L'information étant à la base de tout suivi conjoncturel, il convient en effet d'être en mesure de savoir où, par qui et comment elle est traitée et les limites auxquelles on se heurte. Ce rapport ne peut prétendre à l'exhaustivité compte tenu des délais et de la période d'exécution de cette étude. La seconde partie constitue une première synthèse sur les évolutions récentes saisies en termes d'aménagements portuaires, tant d'un point de vue juridique qu'économique et financier. Cette étude est à considérer comme une première étape destinée à poser les bases pour une étude plus approfondie. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1992/rapport-4169.pdf
http://archimer.ifremer.fr/doc/00000/4169/

Éditeur(s) : Actes de colloques Ifremer, Tahiti, French Polynesia, 20 Feb - 4 Mar 1989, n°9, chap. 54, pp.563-568
Résumé : Leporinus friderici is a South American promising species for fish culture. In French Guiana the "morphological species", L. friderici, L. granti, L. lebaili and L. affinis steyermarki are found. Their identification is sometimes difficult on usual criterion. To constitute an initial broodstock of L. friderici from local wild populations, the genetic structure of these species was studied. Fifteen enzyme systems, representing twenty loci, were screened.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1989/acte-1441.pdf
http://archimer.ifremer.fr/doc/00000/1441/

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The early 2000s marked the end of the Golden age of the antibiotics and the beginning of the awareness on the potential threat to human health due to the dissemination of antimicrobial resistance. As a base-line study, we investigated the antimicrobial susceptibility of 99 strains of non-O1/non-O139 Vibrio cholerae isolated fromwastewater and shellfish in 2000/2001 within La Rance estuary (Brittany, France). All isolates were susceptible to amoxicillin-clavulanic acid, cefotaxime, imipenem, chloramphenicol, nalidixic acid, ciprofloxacin, norfloxacin, amikacin, gentamicin, tetracycline, doxycycline, trimethoprim-sulfamethoxazole, and erythromycin. The only resistances were to streptomycin, sulfonamides and ampicillin: 54.6% of the isolates had acquired resistance to at least one antimicrobial agent among them and only six isolates from cockles were multidrug resistant. On the basis of the distribution of a limited selection of resistance associated genes, our study shows that V. cholerae can constitute an environmental reservoir for these genes. However, none of our isolates harbored integron. This result casts doubt on the capacity of non-O1/non-O139 V. cholerae to acquire resistance-associated genes in such context, and on its potential role of indicator of the dissemination of antimicrobial resistance in the aquatic environment.
ISSN: 1664-302X

hal-01616065
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616065
DOI : 10.3389/fmicb.2017.01637
PUBMED : 28955305

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Background : Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.Results : Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.Conclusions : We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time.
ISSN: 0960-9822

hal-01149637
http://hal.upmc.fr/hal-01149637
http://hal.upmc.fr/hal-01149637/document
http://hal.upmc.fr/hal-01149637/file/Logares_et_al_CurrentBiol_accepted.pdf
DOI : 10.1016/j.cub.2014.02.050

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
Fault pseudotachylytes form by frictional melting during seismic slip and therefore are widely interpreted as “earthquake fossils.” Rapid movement along a rupture surface typically forms a pseudotachylyte generation vein, the thickness of which increases with earthquake magnitude. The direction and sense of seismic slip cannot always be determined due to the generally complex geometry of pseudotachylyte veins. Here we show, for the first time, that the orientation of the magnetic fabric of fault pseudotachylytes indicates both direction and sense of seismic slip. The magnetic fabric, acquired in a manner similar to that of other magmas, arises in this case from the asymmetric preferred orientation of paramagnetic grains during viscous shear of the friction melt. This kinematic information, coupled with fault plane orientation and generation vein thickness, provides new and critical insight for the earthquake focal mechanism. The magnetic fabric of pseudotachylytes therefore not only constitutes a valuable kinematic criterion for these fault rocks, but also could expand our knowledge of prehistoric seismic events.
ISSN: 0091-7613

hal-01217133
https://hal.archives-ouvertes.fr/hal-01217133
DOI : 10.1130/G36587.1

Éditeur(s) : ISTPM
Résumé : In this paper, the authors present a general table of the present extension of ciguatoxism in the Mascarene Islands. A statistically significant relation exists between the variations of poisonous fish proportions and the periods of tropical cyclones in this fishing area. The tests showed that the ciguatera known from Mauritius, Rodriguez, Chagos and Saya-de-Malha Islands, is also present in the Amirantes Islands. The coastal ichtyosarcotoxism of the Reunion was also studied; this phenomenon does not constitute an obstacle to the activity of the artisanal fishery.
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1978-12 , Vol. 42 , N. 4 , P. 325-345

Droits : Ifremer
http://archimer.ifremer.fr/doc/1978/publication-1962.pdf
http://archimer.ifremer.fr/doc/00000/1962/

Éditeur(s) : Elsevier
Résumé : The uptake and loss kinetics of Cd were determined in two species of scallops from the European coasts, the variegated scallop Chlamys varia and the king scallop Pecten maximus, following exposures via seawater, phytoplankton and sediment using highly sensitive radiotracer techniques (Cd-109). Results indicate that, for seawater and dietary pathways, C. varia displays higher bioaccumulation capacities in terms of uptake rate from water and fraction absorbed from ingested food (assimilation efficiency) than Pecten maximus. Regarding sediment exposure, P. maximus displayed low steady-state Cd transfer factor (TFSS < 1); however, once incorporated, a very large part of Cd transferred from sediment (92%) was strongly retained within R maximus tissues. Both species showed a high retention capacity for Cd (biological half-life, T-b1/2 > 4 months), suggesting efficient mechanisms of detoxification and storage in both species. The digestive gland was found to be the main storage organ of Cd in the two scallops regardless of the exposure pathway. However, Cd was stored differently within this organ according to the species considered: 40% of the total Cd was found in the soluble cellular fraction in C. varia whereas this soluble fraction reached 80% for P. maximus. This suggests that the two species displayed different Cd detoxification/storage mechanisms. Finally, the present study has determined the relative contribution of the different exposure pathways to global Cd bioaccumulation for the two scallop species. Results clearly show that for both species, food constitutes the major accumulation pathway, contributing for >99% and 84% of the global Cd bioaccumulation in C. varia and R maximus, respectively. This work confirms the previous assumption, derived from a bibliographic overview, that dietary pathway plays a prevalent role in metal bioaccumulation in Pectinidae. (C) 2007 Elsevier B.V. All rights reserved.
Journal of Experimental Marine Biology and Ecology (0022-0981) (Elsevier), 2007-12 , Vol. 353 , N. 1 , P. 58-67

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3581.pdf
DOI:10.1016/j.jembe.2007.09.001
http://archimer.ifremer.fr/doc/00000/3581/

Éditeur(s) : Geological Society of America
Résumé : A seismic-refraction study of the sedimentary structure of the South West African continental shelf was carried out between lat 17°S and 24°S using expendable sonobuoys. Striking differences exist both in the topography and sedimentary structure between the shelf north and south of the Walvis Ridge. South of the ridge, as far as lat 23°S, the shelf consists of a prograded series, whereas north of the ridge, at least as far as lat 17°S, east-trending canyons cut the shelf sedimentary cover. The steep northem scarp of Walvis Ridge can be traced eastward under the sediment of the continental margin. The southern flank of the ridge is buried under a thicker sedimentary cover and could only be traced eastward to long. 10°E on seismic-reflection records. This flank probably parallels the northern scarp under the continental margin. Two-dimensional structural models, built with the help of seismic-retlection and seismic-refraction results and based on the hypothesis of local isostatic equilibrium, account for the obsewed gravity profiles. A compensating root consists of light material (density 2.95 g/cm3) and reaches a depth of about 25 km. Gravity results also suggest that the Walvis Ridge does not constitute a superimposed load on the lithosphere; rather, the ridge and its underlying compensating mass were created at approximately the same time as the adjacent ocean basins. The creation of the two aseismic ridges of the South Atlantic - the Rio Grande Rise and Walvis Ridge - by a mantle hot spot and plume is accepted; this theory seems to explain most of the peculiar features of the Walvis Ridge. However, it is probable that the surface expression of the mantle hot spot was controlled by the presence of weak zones in the lithosphere such as transform faults. [NOT CONTROLLED OCR]
Geological Society of America Bulletin (Geological Society of America), 1975 , Vol. 86 , P. 1713-1724

Droits : Geological Society of America
http://archimer.ifremer.fr/doc/1975/publication-4978.pdf
http://archimer.ifremer.fr/doc/00000/4978/

Éditeur(s) : Elsevier Science Bv
Résumé : The Danube River Basin–Black Sea area represents a unique natural laboratory for studying the interplay between lithosphere and surface as well as source to sink relationships and their impact on global change. This paper addresses some information on the “active sink” of the system; i.e. the Danube deep sea fan and the Black Sea basin. The present study focuses on the distal sedimentary processes and the evolution of sedimentation since the Last Glacial Maximum. This is investigated through recently acquired long piston coring and shallow seismic data recovered at the boundary of influence of the distal part of the Danube turbidite system (to the north-west) and the Turkish margin (to the south). This dataset provides a good record of the recent changes in the sedimentary supply and climato-eustasy in the Black Sea region during the last 25 ka. This study demonstrates that the deep basin deposits bear the record of the Late Quaternary paleoenvironmental changes and that the western Black Sea constitutes an asymmetric subsident basin bordered by a northern passive margin with confined, mid-size, mud-rich turbidite systems mainly controlled by sea-level, and a southern turbidite ramp margin, tectonically active. Highlights ► Oceanographic results from survey carried out in the western Black Sea are presented. ► The Danube fan distal part: the Black Sea main depositional feature is described. ► This study is on the morphology and gravity sedimentation in the Black Sea deep basin. ► Data were collected at the boundary between the Danube fan and the Turkish margin. ► The dataset provide a good record of sedimentary supply and climato-eustatic changes.
Global And Planetary Change (0921-8181) (Elsevier Science Bv), 2013-04 , Vol. 103 , P. 232-247

Droits : 2012 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00095/20637/18272.pdf
DOI:10.1016/j.gloplacha.2012.05.002
http://archimer.ifremer.fr/doc/00095/20637/

Résumé : L'année 1982 a été pour le CNEXO une année de réorientation des activités de l'établissement selon les axes définis le 2 mars par le gouvernement qui "conscient de l'enjeu que représentent les activités marines pour la France et en particulier pour les Départements et Territoires d'Outre-Mer décidait d'accroître l'effort de recherche et de développement technologique qu'il entend consacrer à ce secteur (...)". Cette année a également été celle de la constitution d'un ensemble plus vaste qui résultera de la mise en commun des travaux sur les ressources vivantes jusqu'alors menés séparément par le CNEXO et l'ISTPM (Institut Scientifique et Technique des Pêches Maritimes). C'est dire combien l'année 1982 a été une année de réflexion menée, en association avec l'ISTPM dans les trois centres et au siège du CNEXO, afin de prendre en compte les nouvelles priorités retenues. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1982/rapport-4832.pdf
http://archimer.ifremer.fr/doc/00000/4832/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
BACKGROUND: The male genital tract is suspected to constitute a viral sanctuary as persistent HIV shedding is found in the semen of a subset of HIV-infected men receiving effective antiretroviral therapy (HAART). The origin of this persistent shedding is currently unknown. Phylogenetic studies indicated that HIV in semen from untreated men arises from local sources and/or passive diffusion from the blood. We previously demonstrated in human and macaque low levels and localized infection of several semen-producing organs by HIV/SIV. Using a macaque model, this study investigates the impact of short term HAART (2-4 weeks) initiated either during the asymptomatic chronic stage or 4 h post-intravenous inoculation of SIVmac251 on the infection of male genital organs. METHODOLOGY/PRINCIPAL FINDINGS: Short term HAART during the chronic stage decreased blood viral load. No major impact of HAART was observed on SIV DNA levels in male genital organs using a sensitive nested PCR assay. Using in situ hybridization, SIV RNA+ cells were detected in all male genital tract organs from untreated and treated animals with undetectable blood viral load following HAART. Infected CD68+ myeloid cells and CD3+ T lymphocytes were detected pre- and post-HAART. In contrast, short term HAART initiated 4 h post-SIV exposure led to a drastic decrease of the male genital tissues infection, although it failed to prevent systemic infection. In both cases, HAART tended to decrease the number of CD3+ T cells in the male organs. CONCLUSIONS: Our results indicate that the established infection of male genital organs is not greatly impacted by short term HAART, whereas the same treatment during pre-acute phase of the infection efficiently impairs viral dissemination to the male genital tract. Further investigations are now needed to determine whether infection of male genital organs is responsible for long term persistent HIV shedding in semen despite HAART.
ISSN: 1932-6203

hal-00876945
https://hal.archives-ouvertes.fr/hal-00876945
https://hal.archives-ouvertes.fr/hal-00876945/document
https://hal.archives-ouvertes.fr/hal-00876945/file/Impactsur Short-Term-accepted.pdf
DOI : 10.1371/journal.pone.0037348

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Climate models predict a range of changes in tropical forest regions, including increased average temperatures, decreased total precipitation, reduced soil moisture and alterations in seasonal climate variations. These changes are directly related to the increase in anthropogenic greenhouse gas concentrations, primarily CO2. Assessing seasonal forest growth responses to climate is of utmost importance because woody tissues, produced by photosynthesis from atmospheric CO2, water and light, constitute the main component of carbon sequestration in the forest ecosystem. In this paper, we combine intra-annual tree growth measurements from published tree growth data and the corresponding monthly climate data for 25 pan-tropical forest sites. This meta-analysis is designed to find the shared climate drivers of tree growth and their relative importance across pan-tropical forests in order to improve carbon uptake models in a global change context. Tree growth reveals significant intra-annual seasonality at seasonally dry sites or in wet tropical forests. Of the overall variation in tree growth, 28.7% was explained by the site effect, i.e. the tree growth average per site. The best predictive model included four climate variables: precipitation, solar radiation (estimated with extrasolar radiation reaching the atmosphere), temperature amplitude and relative soil water content. This model explained more than 50% of the tree growth variations across tropical forests. Precipitation and solar radiation are the main seasonal drivers of tree growth, causing 19.8% and 16.3% of the tree growth variations. Both have a significant positive association with tree growth. These findings suggest that forest productivity due to tropical tree growth will be reduced in the future if climate extremes, such as droughts, become more frequent.
ISSN: 1932-6203

hal-01268529
https://hal.archives-ouvertes.fr/hal-01268529
https://hal.archives-ouvertes.fr/hal-01268529/document
https://hal.archives-ouvertes.fr/hal-01268529/file/journal.pone.0092337.PDF
DOI : 10.1371/journal.pone.0092337

Éditeur(s) : Cambridge Univ Press
Résumé : This paper offers a theoritical and empirical model of ecosystem-based fishery management. A multi-species and multi-fleet integrating Lotka-Volterra trophic dynamics as well as production and profit assessments is developed and applied to the coastal fishery of French Guiana. This small-scale fishery constitutes a challenging example with high fish biodiversity, several non-selective fleets and a potentially increasing local food demand due to demographic growth. The dynamic model is calibrated with 13 species and four fleets using monthly catch and effort data from 2006 to 2009. Several contrasted fishing scenarios including status quo, total closure, economic and viable strategies are then simulated. They are compared from the viewpoints of both biodiversity preservation and socioeconomic performance, assuming fixed landing prices and fixed costs. We show that fishing outputs, including food supply and fleet profitability, can be sustained on average but a loss of species cannot be avoided.
Environment And Development Economics (1355-770X) (Cambridge Univ Press), 2013-06 , Vol. 18 , P. 245-269

Droits : Cambridge University Press 2013
http://archimer.ifremer.fr/doc/00124/23483/21311.pdf
http://archimer.ifremer.fr/doc/00124/23483/21375.pdf
DOI:10.1017/S1355770X13000065
http://archimer.ifremer.fr/doc/00124/23483/

Résumé : Sea fish farms with production of more than 20 tons per year in France must obtain two operating licences: (i) one for Sea Farming (AECM), with the aim of ensuring that the granted site and use of the maritime public domain for exploitation will respect all restrictions of general interest; (ii) one for regulating Facilities Classified for the Protection of the Environment (ICPE). Although the first one requires a relatively simple licence request file, the second one demands a very complete file, which includes, beyond the notice of exploitation information, a complete impact study, as well as a hazards study and a health and safety notice. In this context, petitioners in Corsica (adjustment of status or new exploitation) are faced with the same difficulties, which highlighted the need for a methodological guide adapted to each region's specific situation, assembling in particular the necessary baseline data (legal, zootechnical, geographical, climatic, socio-economic, ecological...) as well as recognised methods for evaluating the potential effects of the farm on the environment. Development of this guide was supported by ADEC and supervised by a steering committee composed of representatives from the administrations concerned, fish farmers and scientific bodies. The significant aspects dealt with the effects of fish farming on Posidonie herbarium, a protected species very present in Corsica and with coordinating the two AECM and ICPE procedures. For each part of the ICPE file, the guide introduces the technical or scientific context and, depending upon the case, the state of the art, sources of available data, acquisition and methods of acquiring measurements and of assessing the potential effects, as well as practical editing recommendations. Finally, the guide is made complete by a model schedule of conditions designed to help petitioners to have a specialist research department incorporate all or part of the file. This guide primarily concerns first-time marine facilities for exploitation in Corsica, conceived of as in the open sea rather than in confined spaces. Nonetheless, any fish farmer or future fish farmer needing to process a request for an exploitation licence may find it useful.
Les piscicultures marines de plus de 20 t/an de production sont soumises en France à l'obtention de deux autorisations d'exploiter : (i) celle au titre des Cultures Marines (AECM), visant à s'assurer que le site concédé et l'usage du domaine public maritime pour l'exploitation permettent de respecter l'ensemble des contraintes d'intérêt général ; (ii) celle au titre de la réglementation des Installations Classées pour la Protection de l'Environnement (ICPE). Si la première nécessite un dossier de demande d'autorisation relativement simple, la seconde requiert un dossier très complet, qui comprend, outre une notice de renseignements sur l'exploitation, une étude d'impact complète, ainsi qu'une étude des dangers et une notice d'hygiène et de sécurité. Dans ce contexte, les demandeurs en Corse (régularisation ou exploitation nouvelle) sont confrontés aux mêmes difficultés, ce qui a mis en évidence le besoin d'un guide méthodologique adapté aux spécificités régionales, rassemblant en particulier les données de base nécessaires (juridiques, zootechniques, géographiques, climatiques, socio-économiques, écologiques...) ainsi que les méthodes reconnues de l'évaluation des effets potentiels de la ferme sur l'environnement. L'élaboration de ce guide a été soutenue par l'ADEC et suivie par un comité de pilotage composé de représentants des administrations concernées, des pisciculteurs et d'organismes scientifiques. Les aspects importants ont porté sur les effets de la pisciculture sur l'herbier de Posidonie, espèce protégée très présente en Corse et sur la coordination entre les deux procédures AECM et ICPE. Pour chaque partie du dossier ICPE, le guide présente le contexte technique ou scientifique et selon le cas, l'état de l'art, les sources de données disponibles, les méthodes d'acquisition des mesures et d'évaluation des effets potentiels, ainsi que des recommandations pratiques de rédaction. Enfin, le guide est complété par un cahier des charges type destiné à aider les demandeurs à confier à un bureau d'étude spécialisé la réalisation de tout ou partie de la constitution du dossier. Ce guide concerne prioritairement les installations marines de nouvelles exploitations en Corse, envisagées en mer ouverte plutôt que dans des espaces confinés. Néanmoins tout pisciculteur ou futur pisciculteur devant instruire une demande d'autorisation d'exploiter peut y trouver intérêt.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2004/rapport-2188.pdf
http://archimer.ifremer.fr/doc/00000/2188/