Résumé : Les fourmis sont des organismes cibles appropriés pour les études environnementales. Au cours de notre étude, nous nous sommes focalisés sur les fourmis de la litière via l'application de deux méthodes de récolte complémentaires selon le protocole all (ants of leaf litter). Dans les forêts naturelles de Guyane française, l'hétérogénéité environnementale et les perturbations structurent les communautés de fourmis de la litière en influençant la richesse, la diversité, l'abondance et la densité en espèces ainsi que les compositions taxonomique et fonctionnelle. Chaque type de formation végétale possède une communauté spécifique. La fragmentation et la conversion des forêts en plantations ont entrainé une altération plus ou moins profonde des communautés; cette variabilité est fonction du type d’agriculture et des espèces d'essences cultivées. Bien que l'altération des communautés se soit révélée maximale dans la plupart des monocultures, les plantations de cacaoyers ont un potentiel de conservation réel. Enfin, dans un contexte ou il est urgent de simplifier l'intégration des arthropodes dans les études de conservation, de contrôle et de suivi de la santé des écosystèmes terrestres, la méthode des réseaux de neurones est apparue comme un outil puissant pour mettre en évidence et analyser les patrons des communautés de fourmis.
Ants are reliable and relevant target organisms for environmental surveys. In our study, we focused on litter-dwelling ants through the use of two complementary sampling methods that were implemented according to the ants of leaf litter (all) protocol. In pristine forests of french guiana, leaf-litter ant communities are structured by environmental heterogeneity and natural perturbations - which influence species richness, diversity, abundance and density, as well as taxonomic and functional composition. This results in habitat-specific communities for each vegetal formation. Forest fragmentation and conversion into monocultures have led to a more or less deep alteration of the ant communities; this variability depends on the type of agricultural system and cultivated tree species. Although the intensity of community alteration peaked in tree monocultures, cocoa plantation exhibited a real potential for native species conservation. Finally, in the current context where simplifying the integration of arthropods into conservation programs as well as into surveys designed to monitor and manage the environment is critical, the use of neural networks appears to be a powerful tool for reliably highlighting and analyzing ant communities patterns.

http://www.theses.fr/2011AGUY0475/document

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Physical modeling of oblique subduction is performed to study the mechanism of strain partitioning. The model is two-layer and includes the elasto-plastic lithosphere (the overriding and subducting plates) and the low-viscosity liquid asthenosphere. The subduction is driven by a push force from a piston and a pull force when the density contrast Ap between the subducting plate and the asthenosphere is positive. We vary both Ap and the interplate friction (frictional stresses). Slip partitioning is obtained only in the models with high interplate friction and only when the overriding plate contains a weak zone. This zone in the models corresponds either to locally thinned litho-sphere or to cut (fault). The horizontal, trench-normal component of the interplate friction force [Ffh[ can be comparable with the absolute value of the horizontal component of the nonhydrostatic interplate pressure force [Fph [ in the subduction zone. Ffh is always negative (compression), while Fph can be either negative (compressional subduction regime) or positive (extensional regime). High friction, which promotes partitioning, can completely cancel the extensional (suction) force Fph. Back arc tension and strike-slip faulting appear thus as conflicting processes, although they can coexist in the same subduction zone, depending on the relative values of relevant forces. It appears that high friction can exist only in compressional subduction zones where partitioning should develop more easily. This conclusion is supported by the comparison of two oblique subduction zones, having similar geometry: the compressional southern Kurile zone (strong partitioning) and extensional southern Ryukyu zone (no lithospheric-scale partitioning). Other factors controlling the strain partitioning are the length of the oblique subductlon zone, the boundary conditions at the transverse limits of the forearc sliver, and of course, the obliquity of subduction.
ISSN: 2169-9275

hal-01261396
https://hal.archives-ouvertes.fr/hal-01261396
https://hal.archives-ouvertes.fr/hal-01261396/document
https://hal.archives-ouvertes.fr/hal-01261396/file/chemendaJGR2000.pdf
DOI : 10.1029/1999JB900332

Éditeur(s) : HAL CCSD
Résumé : International audience
Clear cell renal cell carcinoma (ccRCC) has a poor prognosis with a 50% risk of metastases. Little is known about the phenotypic and molecular profiles of metastases regarding their corresponding primary tumors. This study aimed to screen phenotypic and genotypic differences between metastases and their corresponding primary tumors. We selected four cases with available frozen material. The histological, immunohistochemical (VEGFA, CD31, SMA, Ki67, p53, PAR-3), FISH (VHL gene), next-generation sequencing (VHL and c-MET genes), multiplex ligation-dependent probe amplification, and array-(comparative genomic hybridization) CGH analyses were realized. Metastases were nodal, hepatic (synchronous), adrenal, and pulmonary (metachronous). High-grade tumor cells were significantly more frequent in metastases (p = 0.019). Metastases and high-grade zones of primary tumors shared similar characteristics compared to low-grade zones: a lower microscopic vascular density (43.5 vs 382.5 vessels/mm(2); p = 0.0027), a higher expression of VEGF (73 vs 10%, p = 0.045), Ki67 (37.6 vs 8.3%; p = 0.011), and p53 (54 vs 10.6%; p = 0.081), and a cytoplasmic and membranous PAR-3 staining. Metastases exhibited more chromosomal imbalances than primary tumors in total (18.75 ± 6.8; p = 0.044) with more genomic gains (13.5 ± 7; p = 0.013). The loss of chromosome 9 and gain of Xq were found in both primary tumors and metastases but gains of loci or chromosomes 2p, 3q, 5, 8q, 12, and 20 were only found in metastases. The VHL gene status was similar in each tumor couple. Although metastases and primary tumors share common histological features, this study highlights chromosomal differences specific to metastases which could be involved in ccRCC metastatic evolution.
Virchows Archiv

hal-01560281
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560281
DOI : 10.1007/s00428-017-2124-0
PUBMED : 28488172

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
To improve earthquake location, we create a 3-D a priori P-wave velocity model (3-DVM) that approximates the large velocity variations of the Ecuadorian subduction system. The 3-DVM is constructed from the integration of geophysical and geological data that depend on the structural geometry and velocity properties of the crust and the upper mantle. In addition, specific station selection is carried out to compensate for the high station density on the Andean Chain. 3-D synthetic experiments are then designed to evaluate the network capacity to recover the event position using only P arrivals and the MAXI technique. Three synthetic earthquake location experiments are proposed: (1) noise-free and (2) noisy arrivals used in the 3-DVM, and (3) noise-free arrivals used in a 1-DVM. Synthetic results indicate that, under the best conditions (exact arrival data set and 3-DVM), the spatiotemporal configuration of the Ecuadorian network can accurately locate 70 per cent of events in the frontal part of the subduction zone (average azimuthal gap is 289° ± 44°). Noisy P arrivals (up to ± 0.3 s) can accurately located 50 per cent of earthquakes. Processing earthquake location within a 1-DVM almost never allows accurate hypocentre position for offshore earthquakes (15 per cent), which highlights the role of using a 3-DVM in subduction zone. For the application to real data, the seismicity distribution from the 3-D-MAXI catalogue is also compared to the determinations obtained in a 1-D-layered VM. In addition to good-quality location uncertainties, the clustering and the depth distribution confirm the 3-D-MAXI catalogue reliability. The pattern of the seismicity distribution (a 13 yr record during the inter-seismic period of the seismic cycle) is compared to the pattern of rupture zone and asperity of the Mw = 7.9 1942 and the Mw = 7.7 1958 events (the Mw = 8.8 1906 asperity patch is not defined). We observe that the nucleation of 1942, 1958 and 1906 events coincides with areas of positive Simple Bouguer anomalies and areas where marine terraces are still preserved on the coastal morphology. From north to south: (1) the 1958 rupture zone is almost aseismic and is attributed to a zone of high coupling; (2) south of the Galera alignment (perpendicular to the trench), the 1942 rupture zone presents moderate seismicity, deeper on the seismogenic interplate zone, and abutting on the Jama cluster (to the south). This cluster is facing the Cabo Pasado cap and positive Bouguer anomalies on the overriding margin. We suspect that this cluster reflects a zone of local asperity (partial coupling). South of the Jama cluster, the spherical aseismic zone in the Bahia area is interpreted as having a low seismic coupling (steady creep motion or slow slip events). We suspect that the site that generated the three M > 7 events (1896, 1956 and 1998) correspond to a small patch of strong coupling. To the south, in the Manta-Puerto Lopez zone, the seismicity is mainly organized in earthquake swarms (1998, 2002, 2005). Although slow slip events have been observed in the area (Vallée et al. submitted), we infer from the coastline shape, the marine terraces and the high positive Bouguer anomalies that the seismicity here might reveal a significant amount of seismic coupling.
ISSN: 0956-540X

hal-00873478
https://hal.archives-ouvertes.fr/hal-00873478
DOI : 10.1093/gji/ggs083

Éditeur(s) : HAL CCSD American Physical Society
Résumé : 1 tex, 16 figures
International audience
We make use of a subtraction procedure, introduced to overcome double--counting problems in beyond--mean--field theories, in the second random--phase--approximation (SRPA) for the first time. This procedure guarantees the stability of SRPA (so that all excitation energies are real). We show that the method fits perfectly into nuclear density--functional theory. We illustrate applications to the monopole and quadrupole response and to low--lying $0^+$ and $2^+$ states in the nucleus $^{16}$O. We show that the subtraction procedure leads to: (i) results that are weakly cutoff dependent; (ii) a considerable reduction of the SRPA downwards shift with respect to the random--phase approximation (RPA) spectra (systematically found in all previous applications). This implementation of the SRPA model will allow a reliable analysis of the effects of 2 particle--2 hole configurations ($2p2h$) on the excitation spectra of medium--mass and heavy nuclei.
ISSN: 0556-2813

in2p3-01193119
http://hal.in2p3.fr/in2p3-01193119
DOI : 10.1103/PhysRevC.92.034303
ARXIV : 1506.05975

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Secondary migration is defined as the movement of hydrocarbons through relatively permeable rocks from source to trap: a two-phase flow within a porous medium. Depending on the geometry and capillary pressure distributions of carrier beds, secondary migration has both vertical and lateral components. The present paper focuses on that part of the migration where the movement is mainly vertical. Its objective is to propose a description of the dynamics governing the vertical part of secondary migration based on the main physical aspects of two-phase flow in a homogeneous porous medium. The study is illustrated by laboratory observations performed in a vertical, 2-D Hele-Shaw cell filled with a transparent porous medium where the flow of dyed oil invading a wetting fluid is visually observed. These observations help us to understand the effect of buoyant, capillary and viscous forces on the resulting flow, the relative importance of which is characterized by non-dimensional numbers. Extrapolating these observations to natural media, it is proposed that vertical secondary migration can be described as a percolation of disconnected and vertically-elongated stringers. These stringers do not move continuously but as a succession of snap-off and re-feeding events which result in a jerky upward movement. Using parameters characterizing the physical properties of the fluid and of the porous medium, the geometry and the dynamic behavior of the stringers are estimated. The width of stringers occurring during secondary migration in geological media is centimetric and their vertical size ranges from several centimeters to a few meters. An upper limit of the mean upward velocity of stringers is proposed, as well as an estimate of their spatial density and of the minimum, average horizontal distance (decametric) between two stringers. The stringers are sparsely distributed, resulting in a low average oil loss and a high efficiency of the vertical migration process.
ISSN: 0264-8172

hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370/document
https://hal.archives-ouvertes.fr/hal-00831370/file/pekins-V-edited.pdf
DOI : 10.1016/j.marpetgeo.2013.04.020

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The nature and extent of the regional lithosphere-asthenosphere interaction beneath Ireland and Britain remains unclear. Although it has been established that ancient Caledonian signatures pervade the lithosphere, tertiary structure related to the Iceland plume has been inferred to dominate the asthenosphere. To address this apparent contradiction in the literature, we image the 3-D lithospheric and deeper upper-mantle structure beneath Ireland via non-linear, iterative joint teleseismic-gravity inversion using data from the ISLE (Irish Seismic Lithospheric Experiment), ISUME (Irish Seismic Upper Mantle Experiment) and GRACE (Gravity Recovery and Climate Experiment) experiments. The inversion combines teleseismic relative arrival time residuals with the GRACE long wavelength satellite derived gravity anomaly by assuming a depth-dependent quasilinear velocity-density relationship. We argue that anomalies imaged at lithospheric depths probably reflect compositional contrasts, either due to terrane accretion associated with Iapetus Ocean closure, frozen decompressional melt that was generated by plate stretching during the opening of the north Atlantic Ocean, frozen Iceland plume related magmatic intrusions, or a combination thereof. The continuation of the anomalous structure across the lithosphere-asthenosphere boundary is interpreted as possibly reflecting sub-lithospheric small-scale convection initiated by the lithospheric compositional contrasts. Our hypothesis thus reconciles the disparity which exists between lithospheric and asthenospheric structure beneath this region of the north Atlantic rifted margin.
ISSN: 0956-540X

hal-00617815
https://hal.archives-ouvertes.fr/hal-00617815
DOI : 10.1111/j.1365-246X.2011.04921.x

Résumé : Les forêts tropicales contiennent dans leur biomasse aérienne un stock de carbone important à l’échelle de la planète. Mesurer ce stock et comprendre son fonctionnement permet de mieux saisir les enjeux liés à sa protection, sa destruction ou sa modification, ainsi que son rôle dans le cycle du carbone et les mécanismes climatiques globaux. Dans le cadre des problématiques économiques et écologiques liés au climat, les forêts sont progressivement prises en compte dans les programmes internationaux de mesures visant à réduire l’impact anthropique sur le climat (Protocole de Kyoto, 1998 ; Accord de Copenhague, 2009). L’intégration des forêts dans les mécanismes financiers liés au marché du carbone est clairement envisagée dans les années à venir (marché de carbone « d’origine forestière »).L’estimation de la biomasse aérienne d’une parcelle de forêt inventoriée nécessite l’utilisation successive de plusieurs modèles. Dans ces parcelles, le diamètre et l’espèce de chaque arbre sont renseignés. Ensuite, ces parcelles sont utilisées comme références pour l’extrapolation spatiale des valeurs de biomasse. Cette extrapolation repose souvent sur le traitement de signaux aériens (avions, satellites). Il est aussi possible d’utiliser covariables environnementales (climat, géologie, …).L’incertitude associée à l’estimation de la biomasse d’une région est le résultat de toutes les incertitudes associées à ces différents processus. Les connaissances actuelles ne nous permettent pas de quantifier cette incertitude. L’objectif de la thèse est de développer une méthodologie d’estimation de la biomasse qui permette la propagation des incertitudes ainsi que l’identification des sources de cette incertitude.Modèle de hauteur : Nous proposons un nouveau modèle de hauteur pour les forêts tropicales. Les paramètres de ce modèle ont un sens écologique et peuvent être prédits par des variables décrivant le peuplement sur lequel il est appliqué. Nous avons utilisé les données des projets Amalin et Bridge et sélectionné 42 parcelles réparties en Guyane dans lesquelles le diamètre et la hauteur de chaque arbre ont été mesurés.Modèle de densité de bois : Un modèle à été conçu pour associer à chaque espèce une distribution de densité de bois et non une valeur fixe. Nous avons utilisé les données du projet Bridge dans lequel la densité de bois a été mesurée sur 2504 arbres représentant 466 espèces.Modèle de biomasse: Nous avons montré par une analyse de sensibilité que les incertitudes des prédictions de hauteur et de densité de bois n’avaient qu’une part négligeable dans l’incertitude des prédictions de biomasse. L’amélioration de la précision de ces modèles n’est donc pas une priorité. En revanche, le modèle de hauteur peut être une source de biais.Modélisation spatiale : Les modèles développés ont été appliqués à différents réseaux de parcelles couvrant bien la zone littorale guyanaise : inventaires papetiers de l’ONF, réseau Guyafor, projet Amalin… Les prédictions de biomasse de ces parcelles sont utilisées dans un modèle spatiale. Nous produisons ainsi une carte de biomasse guyanaise associée à une carte de l’incertitude de cette estimation.
Tropical forest yield and important part of the aerial vegetation carbon stock on earth. Measuring and understanding this stock distribution is crucial for the management of the tropical forests facing the actual environmental challenges (REDD+, carbon market).Aerial Biomass estimation of forest census plots requires few models depending on the precision of the inventory: diameter models, height models, wood density models. Spatial extrapolation between census plots relies on aerial data (satellite measurements, images) or ground-based data (geology, altitude).The uncertainty of the estimation of a region’s biomass is the result of the uncertainty brought by all these models. The aim of the thesis is to develop models and methods to estimate the biomass of a region while propagating the uncertainties. This is applied to the neo-tropical forest of French Guiana (South America, Guianas Plateau).

http://www.theses.fr/2012AGUY0567/document

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Coral reefs are in decline across the globe as a result of overexploitation, pollution, disease and, more recently, climate change. The impacts of changes in coral cover on associated fish communities can be difficult to predict because of the uneven dependence of reef fish species on corals for food, shelter or the three-dimensional structure they provide. We compared live coral cover, reef fish community metrics, and their associations in two surveys of the lagoon of the remote atoll of Mataiva (French Polynesia) carried out 31 years apart. In contrast to the general pattern of decreasing coral cover reported for many parts of the Indo-Pacific region, live coral cover increased 6–7 fold at Mataiva between 1981 and 2012, and fish density nearly doubled. The stable overall reef fish species richness belied a significant shift in community structure. There was little overlap in community composition across years, and fish assemblages in 2012 were more homogeneous in composition than they were in 1981. Changes in species abundance were not clearly related to species-specific reliance on corals. The strong positive relationships between live coral cover and fish diversity and abundance noted in 1981, when coral cover rarely exceeded 10%, were no longer present in 2012, when coral cover rarely fell below this value. The most parsimonious explanation for these contrasting relationships is that, over the combined range of coral cover observed in the 1981 and 2012 snapshots, there is a rapidly asymptotic relationship between coral and fish. Our results, and other data from the south and west Pacific, suggest that fish diversity and abundance might accumulate rapidly up to a threshold of approximately 10% live coral cover. Such a relationship would have implications for our expectations of resistance and recovery of reef fish communities facing an increasingly severe regime of coral reef disturbances.
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01135589
https://hal.archives-ouvertes.fr/hal-01135589
https://hal.archives-ouvertes.fr/hal-01135589/document
https://hal.archives-ouvertes.fr/hal-01135589/file/2015_02_26_more_coral_more_fish.pdf
DOI : 10.7717/peerj.745

Résumé : Dans les régions tropicales. Il existe une multitude de systèmes alternatifs avec une grande diversité de pratiques. Ces systèmes sont souvent basés sur une utilisation optimale des ressources animales et végétales locales présentes sur l'exploitation. L'objectif de ce travail est de mieux connaître certaines de ces ressources tropicales disponibles et pouvant potentiellement être intéressantes à utiliser en alimentation porcine dans le cadre de ces systèmes alternatifs de type polyculture - élevage. Les résultats montrent que la capacité d'Ingestion des feuilles de manioc et de patate douce est la même quel que soit la forme de présentation (feuilles fraîches ou en farine). La capacité d'ingestion des feuilles de madère est plus élevée lorsqu'elles sont distribuées en farine (95 vs.40SgIj), inversement, les feuilles fraîches d'érythrine sont mieux ingérées (246 vs. 488 g/j). Les résultats sur la valeur nutritionnelle des feuillages tropicaux montrent qu'ils ont une faible densité énergétique comprise entre 6.5 et 8.2 MJ/kg de MS. La détermination du profil en acides aminés des feuilles montrent que les acides aminés des feuilles de madère et de patate douce sont plus digestibles que ceux des feuilles d'érythrine et de manioc.Au final les teneurs en lysine digestible sont de 5,3 g/kg MS pour la patate et 6,3 g/kg MS pour le madère. En conclusion, l'ingestion, ainsi que la teneur énergétique et protéique des feuilles d'une feuille à l'autre varie en fonction de sa teneur en fibres mais également en fonction de leur concentration en tanins. En pratique, les feuilles de patate douce et de madère sont les plus intéressantes pour la réalisation de ration.
In the troples, there are a multitude of alternative systems with wide variety of practices. These systems are often based on an optimal use of local plantand animal on the farm. The objective of this work is to better understand some of these tropical resources avaibable and can potentially be interesting to use in pig feed in the context of these mixed farming system.The results show that the feed intake capacity of cassava and sweet potato leaves is the same whatever the processing form (fresh leaves or meal).The intake capacity of cocoyam leaves18 higher when distributed Into meal (95 vs.408g1d). In opposite the Erythrina fresh leaves are best Ingested (246 va, 488 g 1dl. Results on the nutrltlonal value of tropical foliage show they have low energy density between 6.5 and 8.2 MJ1kg DM. The determlnation of amino acid profile show that the amina acids of cocoyam and sweet potato leaves are more dlgestible than the erythrina and cassava leaves. Ultlmately digestible lysine contents were 5.3 g/kg DM for potato and 6.3 g / kg DM for the cocoyam. ln conclusion, ingestion, and energy and protein content of leaves from one sheet to another depends on its fiber content but aIso according to their tannin. In practice,the leaves of sweet potato and cocoyam are the most Interesting for the realization of diet

http://www.theses.fr/2011AGUY0398/document

Éditeur(s) : HAL CCSD
Résumé : Anopheles darlingi, one of the main malaria vectors in the Neotropics, is widely distributed in French Guiana, where malaria remains a major public-health problem. Elucidation of the relationships between the population dynamics of An. darlingi and local environmental factors would appear to be an essential factor in the epidemiology of human malaria in French Guiana and the design of effective vector-control strategies. In a recent investigation, longitudinal entomological surveys were carried out for 2-4 years in one village in each of three distinct endemic areas of French Guiana. Anopheles darlingi was always the anopheline mosquito that was most frequently caught on human bait, although its relative abundance (as a proportion of all the anophelines collected) and human biting rate (in bites/person-year) differed with the study site. Seasonality in the abundance of human-landing An. darlingi (with peaks at the end of the rainy season) was observed in only two of the three study sites. Just three An. darlingi were found positive for Plasmodium (either P. falciparum or P. vivax) circumsporozoite protein, giving entomological inoculation rates of 0*0-8*7 infectious bites/person-year. Curiously, no infected An. darlingi were collected in the village with the highest incidence of human malaria. Relationships between malaria incidence, An. darlingi densities, rainfall and water levels in the nearest rivers were found to be variable and apparently dependent on land-cover specificities that reflected the diversity and availability of habitats suitable for the development and reproduction of An. darlingi.
Annals of Tropical Medicine and Parasitology / Annals of Tropical Medicine & Parasitology

pasteur-00583507
https://hal-riip.archives-ouvertes.fr/pasteur-00583507
DOI : 10.1179/136485911X12899838683322
PUBMED : 21396247