Éditeur(s) : HAL CCSD
Résumé : Predicting, modelling and analysing the metabolism of xenobiotics, foreign substances to an organism, using computer methods, has been a major challenge for the scientific community for many years. This thesis aims to implement multiscale computing methods for predicting and analyzing the metabolism of xenobiotics. A first focus of this study was on the construction and de novo automatic annotation of metabolic graphs combining high sensitivity and precision. These graphs thus provide the prediction of the metabolism of xenobiotics in humans, as well as the genotoxicity of the molecules and atoms that make up xenobiotics. Then, the work focused on the implementation of a dynamic mathematical model modelling enzymatic competition effects through the development of a methodology allowing the exploitation of limited biological data while limiting inherent biases.
Prédire, modéliser et analyser le métabolisme de xénobiotiques, substances étrangères à un organisme, à l’aide de méthodes informatiques est un challenge majeur mobilisant la communauté scientifique depuis de nombreuses années. Cette thèse vise à implémenter des méthodes informatiques multi-échelles pour prédire et analyser le métabolisme des xénobiotiques. Un premier axe de cette étude portait sur la construction et l’annotation automatique de novo de graphes métaboliques combinant fortes sensibilités et précisions. Ces graphes fournissent ainsi la prédiction du métabolisme de xénobiotiques chez l’homme, ainsi que la génotoxicité des molécules et atomes qui le composent. Puis, le travail s’est orienté sur l’implémentation d’un modèle mathématique dynamique modélisant des effets de compétition enzymatique à travers le développement d’une méthodologie permettant l’exploitation de données biologiques restreintes tout en limitant les biais inhérents.
https://hal-univ-rennes1.archives-ouvertes.fr/tel-01659375

tel-01659375
https://hal-univ-rennes1.archives-ouvertes.fr/tel-01659375
https://hal-univ-rennes1.archives-ouvertes.fr/tel-01659375/document
https://hal-univ-rennes1.archives-ouvertes.fr/tel-01659375/file/these.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Extreme rainfall events can trigger numerous landslides in mountainous areas and a prolonged increase of river sediment load. The resulting mass transfer at the Earth surface in turn induces stress changes at depth, which could be sufficient to trigger shallow earthquakes. The 2009 Morakot typhoon represents a good case study as it delivered 3 m of precipitation in 3 days and caused some of the most intense erosion ever recorded. Analysis of seismicity time-series before and after the Morakot typhoon reveals a systematic increase of shallow (i.e. 0-15 km of depth) earthquake frequency in the vicinity of the areas displaying a high spatial density of landslides. This step-like increase in frequency lasts for at least 2-3 years and does not follow an Omori-type aftershock sequence. Rather, it is associated to a step change of the Gutenberg-Richter b-value of the earthquake catalog. Both changes occurred in mountainous areas of southwest Taiwan, where typhoon Morakot caused extensive landsliding. These spatial and temporal correlations strongly suggest a causal relationship between the Morakot-triggered landslides and the increase of earthquake frequency and their associated b-value. We propose that the progressive removal of landslide materials from the steep mountain landscape by river sediment transport acts as an approximately constant increase of the stress rate with respect to pre-typhoon conditions, and that this in turn causes a step-wise increase in earthquake frequency. To test this hypothesis, we investigate the response of a rate-and-state fault to stress changes using a 2-D continuum elasto-dynamic model. Consistent with the results of Ader et al. (2013), our preliminary results show a step-like increase of earthquake frequency in response to a step-like decrease of the fault normal stress. We also investigate the sensitivity of the amplitude and time-scale of the earthquake frequency increase to the amplitude of the normal stress change and to rheological parameters. Our study offers new insights on the potential influence of extreme erosional events on the short-time scale dynamics of faults and earthquakes.
American Geophysical Union Fall Meeting 2016
San Francisco, United States

insu-01416987
https://hal-insu.archives-ouvertes.fr/insu-01416987

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In ophiolites and in present-day oceanic crust formed at fast spreading ridges, oceanic plagiogranites are commonly observed at, or close to the base of the sheeted dike complex. They can be produced either by differentiation of mafic melts, or by hydrous partial melting of the hydrothermally altered sheeted dikes. In addition, the hydrothermally altered base of the sheeted dike complex, which is often infiltrated by plagiogranitic veins, is usually recrystallized into granoblastic dikes that are commonly interpreted as a result of prograde granulitic metamorphism. To test the anatectic origin of oceanic plagiogranites, we performed melting experiments on a natural hydrothermally altered dike, under conditions that match those prevailing at the base of the sheeted dike complex. All generated melts are water saturated, transitional between tholeiitic and calc-alkaline, and match the compositions of oceanic plagiogranites observed close to the base of the sheeted dike complex. Newly crystallized clinopyroxene and plagioclase have compositions that are characteristic of the same minerals in granoblastic dikes. Published silicic melt compositions obtained in classical MORB fractionation experiments also broadly match the compositions of oceanic plagiogranites; however, the compositions of the coexisting experimental minerals significantly deviate from those of the granoblastic dikes. Our results demonstrate that hydrous partial melting is a likely common process in the root zone of the sheeted dike complex, starting at temperatures exceeding 850A degrees C. The newly formed melt can either crystallize to form oceanic plagiogranites or may be recycled within the melt lens resulting in hybridized and contaminated MORB melts. It represents the main MORB crustal contamination process. The residue after the partial melting event is represented by the granoblastic dikes. Our results support a model with a dynamic melt lens that has the potential to trigger hydrous partial melting reactions in the previously hydrothermally altered sheeted dikes. A new thermometer using the Al content of clinopyroxene is also elaborated.
ISSN: 0010-7999

hal-00534058
https://hal.archives-ouvertes.fr/hal-00534058
DOI : 10.1007/s00410-010-0502-6

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
New U–Pb monazite, zircon, and xenotime ages date the Late Carboniferous crystallization of the anatectic Vialais granite in the Montagne Noire Axial Zone and the high-temperature deformation and metamorphism of the augen gneiss (Ordovician granite protolith) from which the granite was likely derived. The U–Pb monazite ages obtained from the augen gneiss (308 ± 3 Ma), late kinematic Vialais granite (303 ± 4 Ma), and post-kinematic leucogranite (298 ± 2 Ma), bracket the high-temperature deformation and metamorphism at ~ 310–300 Ma, clearly postdating regional contraction and nappe emplacement (> 320 Ma). The planar–linear and locally linear fabrics in the augen gneiss outline a regional-scale double dome structure (Caroux and Espinouse sub-domes) containing smaller (km-scale) upright folds. Compared to the Caroux sub-dome, the larger, migmatitic Espinouse sub-dome contains abundant leucosome, leucogranite bodies and late-kinematic intrusions (Vialais granite). The Vialais granite displays a weak magmatic foliation that defines the main layering of the Espinouse migmatite. Ellipsoidal quartz–sillimanite nodules concentrated above the roof of the granite recorded an increment of strain (vertical shortening, E–NE elongation) during granite emplacement and crystallization, consistent with the extension event that exhumed the domes. These new geochronological and structural data suggest that the Montagne Noire double dome formed in a pull-apart structure within a dextral strike–slip system. Upright folding in the sub-domes has been traditionally assigned to a regional contraction event; alternatively, we propose that local contraction is associated with the convergence of low-viscosity crust beneath the upper crust pull-apart. Dynamic models of extension of hot crust indicate that contraction at depth is generated by flow of low-viscosity orogenic crust converging and rising to fill the gap created by upper crust extension. This interpretation solves the long-standing problem of apparent coeval contraction and extension in the Montagne Noire double dome and establishes migmatite dome emplacement in strike–slip corridors as a style of late Variscan tectonics.
ISSN: 0040-1951

insu-01112009
https://hal-insu.archives-ouvertes.fr/insu-01112009
DOI : 10.1016/j.tecto.2014.12.002

Éditeur(s) : HAL CCSD American Physical Society
Résumé : International audience
This is the second of two papers investigating the mechanical response of cemented granular materials by means of contact dynamics simulations. In this paper, a two-dimensional polydisperse sample with high void ratio is sheared in a load-controlled simple shear numerical device until the stress state of the sample reaches the yield stress. We first study the stress transmission properties of the granular material in terms of the fabric of different subsets of contacts characterized by the magnitude of their normal forces. This analysis highlights the existence of a peculiar force carrying structure in the cemented material, which is reminiscent of the bimodal stress transmission reported for cohesionless granular media. Then, the evolution of contact forces and torques is investigated trying to identify the micromechanical conditions that trigger macroscopic yielding. It is shown that global failure can be associated to the apparition of a group of particles whose contacts fulfill at least one of the local rupture conditions. In particular, these particles form a large region that percolates through the sample at the moment of failure, evidencing the relationship between macroscopic yielding and the emergence of large-scale correlations in the system.
ISSN: 1539-3755

hal-00523451
https://hal.archives-ouvertes.fr/hal-00523451
DOI : 10.1103/PhysRevE.82.011304

Éditeur(s) : HAL CCSD
Résumé : Gravitropism is a major process in vertical growth as it allows the positioning of plant in the gravity field and thus, for trees, it takes part in the light foraging strategies. Without any gravitropism, trees would adopt a weeping habit or fall on the ground due to the increasing with growth supported weight, especially at the advance regeneration stage (sapling stage) in the understorey, where tree are very slender and poorly stiff. Most of the gravitropic studies are made by physiologists in order to understand the process and thus are associated to complex laboratory methods (genetic engineering, anatomical studies, accurate 2D ou 3D measurements of form changes with time). In order to study the ecological relevance and the specific diversity of gravitropic performances in natural forests, we developed a framework that uses different kinds of datas. Synchronical analysis has been done i) at the population level in large sample of trees and ii) at the tree level from destructive measurement of the dissymmetry maturation strains known to be the main motor of the posture control reaction of trees. In both cases, biomechanical models allows to estimate some aspects of the dynamic gravitropic process. Diachronical analysis has been done in natural conditions on permanent plots, or in a more traditional way, by observing in greenhouse experiments the righting movements of plants artificially tilted. In the first case, the problem is the high variability of natural disturbances and the slowness of growth and movements in the dark understorey. The second choice allows a measurement of a capacity (i.e. the ability of the species to react in quite extreme conditions of verticality disturbance but good for growth light and nutrient conditions) that is more easy to analyse, but is maybe not so relevant for estimating the ecological strategy (some species could have developed a high efficience of gravitropic reaction in natural conditions by avoiding the mechanical disturbance or adapting the reaction to slow growth and changing environments in natural conditions). All approaches use the same basic biomechanical modelling, i) to analyse simultaneously the reaction and the disturbance (due to the weight increase) during growth, or ii) to combine different parameters (geometry, growth, weight, maturation strains) involved in shape changes and posture control. They give a classification of the species according to their gravitropic performances. Results on 15 species are discussed, with relation to shade-tolerance or avoidance.
6th Plant Biomechanics Conference
Cayenne, France

hal-00565956
https://hal.archives-ouvertes.fr/hal-00565956

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Studies on tree biomechanical design usually focus on stem stiffness, resistance to breakage or uprooting, and elastic stability. Here we consider another biomechanical constraint related to the interaction between growth and gravity. Because stems are slender structures and are never perfectly symmetric, the increase in tree mass always causes bending movements. Given the current mechanical design of trees, integration of these movements over time would ultimately lead to a weeping habit unless some gravitropic correction occurs. This correction is achieved by asymmetric internal forces induced during the maturation of new wood. The long-term stability of a growing stem therefore depends on how the gravitropic correction that is generated by diameter growth balances the disturbance due to increasing self weight. General mechanical formulations based on beam theory are proposed to model these phenomena. The rates of disturbance and correction associated with a growth increment are deduced and expressed as a function of elementary traits of stem morphology, cross-section anatomy and wood properties. Evaluation of these traits using previously published data shows that the balance between the correction and the disturbance strongly depends on the efficiency of the gravitropic correction, which depends on the asymmetry of wood maturation strain, eccentric growth, and gradients in wood stiffness. By combining disturbance and correction rates, the gravitropic performance indicates the dynamics of stem bending during growth. It depends on stem biomechanical traits and dimensions. By analyzing dimensional effects, we show that the necessity for gravitropic correction might constrain stem allometric growth in the long-term. This constraint is compared to the requirement for elastic stability, showing that gravitropic performance limits the increase in height of tilted stem and branches. The performance of this function may thus limit the slenderness and lean of stems, and therefore the ability of the tree to capture light in a heterogeneous environment.
ISSN: 0022-5193

hal-00534316
https://hal.archives-ouvertes.fr/hal-00534316
DOI : 10.1016/j.jtbi.2008.10.011

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper is concerned with a null controllability problem for nonlinear parabolic equations appearing in mathematical biology. We consider a system of two equations with a nonlocal nonlinearity, in a bounded domain Ω of ℝN0, N0 being a positive integer sufficiently small. Such models can be used in the context of dynamics of biological systems to describe the migration of population (of bacteria in a container). Our aim is to find a control common to both equations, which solves the null controllabillity of the studied system under constraints on the state. A similar control problem has recently been addressed for the Laplace operator, so the present paper extends those results.
2017 Proceedings of the Conference on Control and its Applications
Pittsburgh, United States

Droits : http://hal.archives-ouvertes.fr/licences/copyright/
hal-01567339
https://hal.archives-ouvertes.fr/hal-01567339
DOI : 10.1137/1.9781611975024.3

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Natural disturbances are the dominant form of forest regeneration and dynamics in unmanaged tropical forests. Monitoring the size distribution of treefall gaps is important to better understand and predict the carbon budget in response to land use and other global changes. In this study, we model the size frequency distribution of natural canopy gaps with a discrete power law distribution. We use a Bayesian framework to introduce and test, using Monte Carlo Markov chain and Kuo–Mallick algorithms, the effect of local physical environment on gap size distribution. We apply our methodological framework to an original light detecting and ranging dataset in which natural forest gaps were delineated over 30 000 ha of unmanaged forest. We highlight strong links between gap size distribution and environment, primarily hydrological conditions and topography, with large gaps being more frequent on floodplains and in wind-exposed areas. In the future, we plan to apply our methodological framework on a larger scale using satellite data. Additionally , although gap size distribution variation is clearly under environmental control, variation in gap size distribution in time should be tested against climate variability.
ISSN: 1726-4170

hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/document
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/file/bg-14-353-2017.pdf
DOI : 10.5194/bg-14-353-2017

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : CABI:20153174020
Understanding how plants are constructed - i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals - is essential for modeling plant growth, carbon stocks, and energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass And Allometry Database (BAAD) for woody plants. The BAAD contains 259634 measurements collected in 176 different studies, from 21084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at the time of publication. Thus, the BAAD contains data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) plants from 0.01-100 m in height were included; and (iv) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed sub-sampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem cross-section including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation.
ISSN: 0012-9658

hal-01535227
https://hal.archives-ouvertes.fr/hal-01535227
DOI : 10.1890/14-1889.1
PRODINRA : 306122

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In fold and thrust belts drainage organization and patterns of sedimentation depend conceptually on the ability or not for preexisting reaches to incise uplifting thrust sheets. In this study we investigate experimentally the dynamics of drainage network in a wedge submitted to shortening and erosion. It allows us to reproduce and to monitor the interactions between tectonics, erosion and sedimentation during the development of up to five successive thrust sheets. In the experiments channels adjust to uplift rate by both increasing their slope and narrowing their channels as it is observed in nature. The series of experiments shows that the proportion of persistent preexisting transverse channels increases with the ratio of rainfall over shortening rates. The experiments confirm the view that the competition between discharge and tectonic uplift controls along-strike variations in sediment flux in sedimentary basins by controlling the drainage organization. If the transverse channels draining a wedge are not diverted, a line-source dispersal system develops in front of the active structure. If channels are diverted in the backlimb of the frontal structure it results in point-sourced depositional systems separated by areas fed only by small channels developing in the front of the wedge. Fans accumulated in front of the active structures reveal two stages of sedimentation, one of progradation, while the frontal structure is active and a second one of valley backfilling and thrust sealing during internal deformation of the wedge. The experiments also suggest that spatial variations in rock uplift rate along a thrust front may be evidenced by minimum-discharge variations of persistent transverse channels.
ISSN: 0040-1951

insu-01252482
https://hal-insu.archives-ouvertes.fr/insu-01252482
DOI : 10.1016/j.tecto.2015.09.007

Éditeur(s) : HAL CCSD
Résumé : International audience
Aegean extension is a process driven by slab rollback that, since 45 Ma, shows a twostage evolution. From Middle Eocene to Middle Miocene it is accommodated by localized deformation leading to i) the exhumation of high-pressure metamorphic rocks from mantle to crustal depths, ii) the exhumation of high-temperature rocks in core complexes and iii) the deposition of Paleogene sedimentary basins. Since Middle Miocene, extension is distributed over the whole Aegean domain giving a widespread development of onshore and offshore Neogene sedimentary basins. We reconstructed this two-stage evolution in 3D at Aegean scale by using available ages of metamorphic and sedimentary processes, geometry and kinematics of ductile deformation, paleomagnetic data and available tomographic models. The restorationmodel shows that the rate of trench retreat was around 0.6 cm/y during the first 30 My and then accelerated up to 3.2 cm/y during the last 15 My. The sharp transition observed in the mode of extension, localized versus distributed, which occurred in Middle Miocene correlates with the acceleration of trench retreat and is more likely a consequence of the Hellenic slab tearing documented by mantle tomography. The development of large dextral NE-SW strike-slip faults during the second stage of Aegean extension, since Middle Miocene, is illustrated by the 450 Km-long fault, recently put in evidence, offshore from Myrthes to Ikaria and onshore from Izmir to Balikeshir, in western Anatolia. Therefore, the interaction between the Hellenic trench retreat and the westward displacement of Anatolia started in Middle Miocene,almost 10 Ma before the propagation of the North Anatolian Fault in the North Aegean. This raises a fundamental issue concerning the dynamic relationship between slab tearing and Anatolia displacement
ISSN: 0438-9557

insu-01574659
https://hal-insu.archives-ouvertes.fr/insu-01574659
https://hal-insu.archives-ouvertes.fr/insu-01574659/document
https://hal-insu.archives-ouvertes.fr/insu-01574659/file/EFFECTS_OF_SLAB_ROLLBACK_ACCELERATION_ON_AEGEAN_EX.pdf
DOI : 10.12681/bgsg.11697

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
I use GPS interseismic velocities and classic 2D elastic half-space models with a screw dislocation to estimate the long-term fault slip rate, locking depth, and the offset between the surface fault trace and the location of the dislocation below the seismogenic zone for 13 segments along 8 major strike-slip faults. Using deduced strike-slip rates and the position of the dislocation to normalize the interseismic velocities to facilitate comparison of spatial patterns of deformation, I show that no substantial differences can be detected, ruling out a large asymmetry in interseismic velocities across the 8 faults used in this study. Only the Carrizo Plain segment of the San Andreas Fault shows a significant asymmetry that cannot be explained by shifting the position of the dislocation at depth relative to the fault trace. However, the resulting perturbation is less than 10% of total strike-slip rate. Fault traces are usually curved, defining a concave side. When the dislocation at depth is significantly offset from the fault trace, the shift is always toward the block on the concave side of the fault trace. This suggests that the fault zone in the lower crust may develop a simpler geometry more consistent with relative motion across the fault than its upper seismogenic part constrained by the structural complexity of the brittle crust. Since the faults used in this study are at different times in their interseismic period, comparing the interseismic velocity fields across them allows identification of possible variations of the interseismic velocities with time. When normalized by slip rate and dislocation location, all the faults show the same interseismic strain with no significant differences between deduced locking depths. These comparisons suggest that if temporal variations occur as suggested by some dynamic earthquake cycle models, they are small and below the accuracy of the available geodetic measurements.
ISSN: 0040-1951

hal-01171753
https://hal.archives-ouvertes.fr/hal-01171753
DOI : 10.1016/j.tecto.2015.01.013

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
We present high resolution observations of microstructure and texture evolution during dynamic recrystallization (DRX) of ice polycrystals deformed in the laboratory at high temperature (≈0.98Tm). Ice possesses a significant viscoplastic anisotropy that induces strong strain heterogeneities, which result in an early occurrence of DRX mechanisms. It is therefore a model material to explore these mechanisms. High resolution c-axis measurements at sample scale by optical techniques and full crystallographic orientation measurements by cryo-Electron Back Scattering Diffraction (EBSD) provide a solid database for analyzing the relative impact of the macroscopic imposed stress vs. the local and internal stress fields on DRX mechanisms. Analysis of misorientation gradients in the EBSD data highlights a heterogeneous dislocation distribution, which is quantified by the Nye tensor estimation. Joint analyses of the dislocation density maps and microstructural observations highlight spatial correlation between high dislocation density sites and the onset of nucleation taking place by grain-boundary bulging, subgrain rotation or by the formation of kink-bands.
ISSN: 2296-6463

hal-01515284
https://hal.univ-lorraine.fr/hal-01515284
DOI : 10.3389/feart.2015.00081

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper investigates the narrative challenges and opportunities that contemporary virology offers to popular science and to fiction. The study of viruses reveals extremely complex relations, playing out over different physical and temporal scales. Viruses constitute a heterogeneous population whose interactions with living organisms occur on multiple levels, and whose numbers are vastly superior to human and even bacterial populations on earth. The resulting challenges for narration can be grouped into three main formal questions. The first is the problem of scale, since the numbers and sizes of virus and host populations are vastly different, as are the temporalities over which they transform and survive. The second is the complexity of actants, since viruses are involved in relations where destruction and mutual benefit can overlap, and genetic transformations are played out over many generations. The third is the choice of images through which to convey their behaviours: many existing metaphors in microbiology, such as “chimeras”, “parasites” or “kill-the-winner dynamics”, carry the narrative potential of a mythological and/or theatrical imagination.These questions will first be examined as challenges encountered in the narration of biology for vulgarization purposes, and effects on narrative forms will be outlined: shifts in focalization in order to create multiscalar perspectives; unstable actantial models as expressions of complex relations; and the use or resistance to narrative structures implied by several key metaphors in virological discourse. These formal characteristics will then be presented through two case studies drawn from contemporary fiction. In his “scientific fable” Conflits Intérieurs (2015), microbiologist Eric Bapteste creates a multiscalar narrative by using humans and viruses as both protagonists and narrators in a battle of ideas. In the graphic novel aâma (2011-2014), Frederik Peeters explores the ambiguous potential, both symbiotic and threatening, of a meta-organism uniting humans with microscopic agents. Both these novels play with scale, metaphor and actants so as to question the fundaments of human identity. They posit the act of narration as a defining human attribute, and consequently use the narrative voice as an arena in which we observe the weakening of the notion of the subject by microbiology.
“Narrative, Cognition & Science” Symposium
Erlangen, Germany

hal-01434744
https://hal.archives-ouvertes.fr/hal-01434744

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The investigation of deformation rates on a mountain piedmont can provide key information for improving our understanding of the overall dynamics of a mountain range. Here, we estimate the shortening rate absorbed by a Quaternary emergent detachment fold on the southeastern piedmont of the Tianshan (China). Our work is primarily based on new 10Be cosmogenic exposure dating of deformed alluvial surfaces. The method we have developed combines depth profiling with sampling of surface cobbles, thereby allowing exposure time, erosion rate and inheritance to be simultaneously constrained. The exposure ages of the uppermost uplifted alluvial surfaces are around 140±17 ka140±17 ka, 130±9 ka130±9 ka and 47±9 ka47±9 ka, from west to east. A terrace lying below the 140 ka surface is dated at 65±5 ka65±5 ka. The ages of the uplifted and folded alluvial surfaces were then combined with estimates of shortening obtained using two distinct methods: (1) the excess area method, where sedimentation rates, extracted from magnetostratigraphic studies, are used to determine the amount of sedimentation after the abandonment of the river; and (2) a folding model derived from sandbox experiments. The late Pleistocene shortening rates are shown to be between 0.4±0.1 mm/yr0.4±0.1 mm/yr and 0.8±0.5 mm/yr0.8±0.5 mm/yr on the western part of the fold and 2.1±0.4 mm/yr2.1±0.4 mm/yr along its central part. The central part of the frontal Yakeng anticline therefore accommodates up to 25% of the total shortening currently absorbed across the whole Eastern Tianshan range (8 mm/yr). However, this situation seems to have prevailed for only the last 150 ka, as the shortening rate absorbed by this nascent fold was previously ten times slower. While the initiation of folding of the Yakeng anticline can be traced back to 5.5 Ma ago, the basinward migration of the active deformation front onto the Yakeng fold is a relatively recent phenomenon and appears to be diachronous from west to east, probably in relation to the tectonic activity of the folds in the hinterland.
ISSN: 0012-821X

hal-01306997
https://hal.archives-ouvertes.fr/hal-01306997
DOI : 10.1016/j.epsl.2015.11.041

Éditeur(s) : Elsevier Science Bv
Résumé : Volcaniclastic successions are well-described in volcanic arc setting but rare in hotspot environments. The present work proposes a facies model of volcaniclastic sedimentation related to basaltic hotspot volcanoes as exemplified by the Piton de la Fournaise volcano (La Réunion Island). The facies model is based on a multi-scale approach combining high-resolution multibeam and backscatter data, deep-water photographs, side scan imagery and Kullenberg piston cores. Data show that a wide range of gravity flows and erosional features develop in the active volcaniclastic sedimentary system. Coastal and submarine instabilities are the main processes shaping the volcano's submarine morphology. Meanwhile, the evolution and dynamics of the sedimentary system are strongly linked with the morpho-structural evolution of the subaerial part of the volcano. The proposed model is characterized by a cyclic succession of stages: (1) a growing stage during which sedimentary activity is mainly restricted to proximal and mid-slope areas; (2) a collapse stage that entirely reshapes the morphology of the submarine slopes; and (3) an erosional stage related to a slow down of volcanic activity, enabling the development of large deep-sea fans.
Marine Geology (0025-3227) (Elsevier Science Bv), 2013-03 , Vol. 337 , P. 35-52

Droits : 2013 Published by Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00137/24798/22939.pdf
DOI:10.1016/j.margeo.2013.01.004
http://archimer.ifremer.fr/doc/00137/24798/

Éditeur(s) : HAL CCSD
Résumé : International audience
In many geological reservoirs, open fractures or fault zones generally induce high spatial variability of hydrodynamical properties and shape the main deep-seated flow paths. It is of crucial interest to determine their structure and properties in order to achieve a sound and sustained exploitation of resources or to estimate the risk of failure of any underground storage. Tiltmeters have emerged as new tools to observe deformation generated by groundwater flow. As such instruments are highly sensitive to pressure gradients, they are perfectly suited for monitoring channelized flow in connected fractures and fault zones. Hence, they provide a unique insight of these reservoirs' geometry and dynamics over broad time scales. Here we demonstrate that continuous tilt data from surface long baseline tiltmeters (LBT) can be used alone to evaluate the general functioning of a fractured hardrock system and estimate the hydraulic properties of its main conductive features. The study is applied to the pumping site of Ploemeur observatory (Brittany, France) which is well documented and instrumented, and therefore forms a convenient setting for introducing LBT as tools for fractured media hydrology. On the short term, tilt signals are strongly correlated with pumping cycles and associated head level changes in well-connected boreholes. Besides, when pumps are stopped the maximal tilt direction is systematically perpendicular to a subvertical fault zone whose azimuth of strike has thereby been refined down to degree precision. By using a semi-analytical model of deformation, we establish the link between tilt and pressure change during pumping interruptions which then allows for hydraulic properties estimation from tilt measurements only. Finally, we validate our results with previous estimates obtained from other studies and discuss the orientation of future work that could enhance these estimates.
AGU Fall Meeting 2014
San Francisco, United States

insu-01093437
https://hal-insu.archives-ouvertes.fr/insu-01093437

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Gravitropism is necessary for plants to control the orientation of their axes while they grow in height. In woody plants, stem re-orientations are costly because they are achieved through diameter growth. The functional diversity of gravitropism was studied to check if the mechanisms involved and their efficiency may contribute to the differentiation of height growth strategies between forest tree species at the seedling stage. Seedlings of eight tropical species were grown tilted in a greenhouse, and their up-righting movement and diameter growth were measured during three months. Morphological, anatomical and biomechanical traits were measured at the end of the survey. Curvature analysis was used to analyse the up-righting response along the stems. Variations in stem curvature depend on diameter growth, size effects, the increase in self-weight, and the efficiency of the gravitropic reaction. A biomechanical model was used to separate these contributions. Results showed that (1) gravitropic movements were based on a common mechanism associated to similar dynamic patterns, (2) clear differences in efficiency (defined as the change in curvature achieved during an elementary diameter increment for a given stem diameter) existed between species, (3) the equilibrium angle of the stem and the anatomical characters associated to the efficiency of the reaction also differed between species, (4) the differences in gravitropic reaction were related to the light requirements: heliophilic species, compared to more shade-tolerant species, had a larger efficiency and an equilibrium angle closer to vertical. This suggests that traits determining the gravitropic reaction are related to the strategy of light interception and may contribute to the differentiation of ecological strategies promoting the maintenance of biodiversity in tropical rain forests.
ISSN: 0022-0957

hal-00797023
https://hal.archives-ouvertes.fr/hal-00797023
https://hal.archives-ouvertes.fr/hal-00797023/document
https://hal.archives-ouvertes.fr/hal-00797023/file/Functional_diversity_gravitropic_Almeras_al.pdf

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
Aggregation patterns are often visually detected in sets of location data. These clusters may be the result of interesting dynamics or the effect of pure randomness. We build an asymptotically Gaussian test for the hypothesis of randomness corresponding to a homogeneous Poisson point process. We first compute the exact first and second moment of the Ripley K-statistic under the homogeneous Poisson point process model. Then we prove the asymptotic normality of a vector of such statistics for different scales and compute its covariance matrix. From these results, we derive a test statistic that is chi-square distributed. By a Monte-Carlo study, we check that the test is numerically tractable even for large data sets and also correct when only a hundred of points are observed
ISSN: 1292-8100

hal-01502640
https://hal-agroparistech.archives-ouvertes.fr/hal-01502640
DOI : 10.1051/ps/2012027