Éditeur(s) : HAL CCSD American Society for Biochemistry and Molecular Biology
Résumé : International audience
2-Amino-9H-pyrido[2,3-b]indole (AαC) is a carcinogenic heterocyclic aromatic amine (HAA) that arises in tobacco smoke. UDP-glucuronosyltransferases (UGTs) are important enzymes that detoxicate many procarcinogens, including HAAs. UGTs compete with P450 enzymes, which bioactivate HAAs by N-hydroxylation of the exocyclic amine group; the resultant N-hydroxy-HAA metabolites form covalent adducts with DNA. We have characterized the UGT-catalyzed metabolic products of AαC and the genotoxic metabolite 2-hydroxyamino-9H-pyrido[2,3- b]indole (HONH-AαC) formed with human liver microsomes, recombinant human UGT isoforms, and human hepatocytes. The structures of the metabolites were elucidated by 1H NMR and mass spectrometry. AαC and HONH-AαC underwent glucuronidation by UGTs to form, respectively, N 2-(β- D-glucosidurony1)-2-amino-9H-pyrido[2,3-b]indole (AαC-N 2-Gl) and N 2-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b] indole (AαC-HON 2-Gl). HONH-AαC also underwent glucuronidation to form a novel O-linked glucuronide conjugate, O-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AαC-HN 2-O-Gl). AαC-HN 2-O-Gl is a biologically reactive metabolite and binds to calf thymus DNA (pH 5.0 or 7.0) to form the N-(deoxyguanosin-8-yl)-AαC adduct at 20-50-fold higher levels than the adduct levels formed with HONH-AαC. Major UGT isoforms were examined for their capacity to metabolize AαC and HONH-AαC. UGT1A4 was the most catalytically efficient enzyme (V max/K m) at forming AαC-N 2-Gl (0.67 μl*min -1*mg of protein -1), and UGT1A9 was most catalytically efficient at forming AαC-HN-O-Gl (77.1 μl*min -1*mg of protein -1), whereas UGT1A1 was most efficient at forming AαC-HON 2-Gl (5.0 μl*min -1*mg of protein -1). Human hepatocytes produced AαC-N 2-Gl and AαC-HN 2-O-Gl in abundant quantities, but AαC-HON 2-Gl was a minor product. Thus, UGTs, usually important enzymes in the detoxication of many procarcinogens, serve as a mechanism of bioactivation of HONH-AαC. © 2012 by The American Society for Biochemistry and Molecular Biology, Inc.
ISSN: 0021-9258

hal-00696860
https://hal-anses.archives-ouvertes.fr/hal-00696860
DOI : 10.1074/jbc.M111.320093
PUBMED : 22393056

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : International audience
The dissolution of carbonate rocks usually leads to both porosity (ϕ) and permeability (k) increase. We present experimental evidences and physical-based models of positive and anti-correlated dynamics of k and ϕ observed during dissolution experiments of carbonate rocks. We study the way the rate of change of ϕ and k is controlled by the degree of undersaturation of the percolating solution for two different types of carbonate rocks. We document the occurrence of an anti-correlated k−ϕ trend when the flowing fluid (deionized water) has a weak capacity of dissolution. A positive correlation is found when CO2 is added to the deionized water to increase the potential dissolution rate. Detailed analyses of the microstructures of the rock performed by X-ray microtomography reveal that low dissolution rate favors detachment of solid particles and their subsequent accumulation at the pore-throat inlet. Particles are detached from the rock matrix due to the differential dissolution rate of the indurated grains and the microporous cement. We then propose a simple phenomenological model to interpret the effect of the pore-throat clogging by the accumulation of partially dissolved carbonate particles. We conjecture that permeability is controlled by the decrease of the effective hydraulic radius and the increase of the tortuosity due to partial and localized obstruction of the pore network. Conversely, increasing the level of undersaturation of the flowing solution leads to an augmented potential of dissolving most of the transported particles before they reach the throats. In this case, both k and ϕ increase and display power-law correlations.
ISSN: 0169-3913

hal-01174145
https://hal.archives-ouvertes.fr/hal-01174145
DOI : 10.1007/s11242-015-0456-2

Éditeur(s) : HAL CCSD
Résumé : National audience
Introduction Le paludisme est en nette diminution en Guyane actuellement. Des foyers de transmission persistent en population autochtone, mais cette pathologie touche aujourd’hui majoritairement les orpailleurs clandestins travaillant en Guyane. Cette étude avait pour objectifs d’évaluer le portage de Plasmodium par bassin d’orpaillage et les connaissances, attitudes et pratiques(CAP) des orpailleurs clandestins vis-à-vis du paludisme.
17es Journées Nationales d’Infectiologie
Lille, France

Droits : info:eu-repo/semantics/OpenAccess
inserm-01410986
http://www.hal.inserm.fr/inserm-01410986
http://www.hal.inserm.fr/inserm-01410986/document
http://www.hal.inserm.fr/inserm-01410986/file/2016%2C%20Douine%20-%20PADS%202-06.pdf
PUBMED : 27495620

Résumé : Dans les régions tropicales. Il existe une multitude de systèmes alternatifs avec une grande diversité de pratiques. Ces systèmes sont souvent basés sur une utilisation optimale des ressources animales et végétales locales présentes sur l'exploitation. L'objectif de ce travail est de mieux connaître certaines de ces ressources tropicales disponibles et pouvant potentiellement être intéressantes à utiliser en alimentation porcine dans le cadre de ces systèmes alternatifs de type polyculture - élevage. Les résultats montrent que la capacité d'Ingestion des feuilles de manioc et de patate douce est la même quel que soit la forme de présentation (feuilles fraîches ou en farine). La capacité d'ingestion des feuilles de madère est plus élevée lorsqu'elles sont distribuées en farine (95 vs.40SgIj), inversement, les feuilles fraîches d'érythrine sont mieux ingérées (246 vs. 488 g/j). Les résultats sur la valeur nutritionnelle des feuillages tropicaux montrent qu'ils ont une faible densité énergétique comprise entre 6.5 et 8.2 MJ/kg de MS. La détermination du profil en acides aminés des feuilles montrent que les acides aminés des feuilles de madère et de patate douce sont plus digestibles que ceux des feuilles d'érythrine et de manioc.Au final les teneurs en lysine digestible sont de 5,3 g/kg MS pour la patate et 6,3 g/kg MS pour le madère. En conclusion, l'ingestion, ainsi que la teneur énergétique et protéique des feuilles d'une feuille à l'autre varie en fonction de sa teneur en fibres mais également en fonction de leur concentration en tanins. En pratique, les feuilles de patate douce et de madère sont les plus intéressantes pour la réalisation de ration.
In the troples, there are a multitude of alternative systems with wide variety of practices. These systems are often based on an optimal use of local plantand animal on the farm. The objective of this work is to better understand some of these tropical resources avaibable and can potentially be interesting to use in pig feed in the context of these mixed farming system.The results show that the feed intake capacity of cassava and sweet potato leaves is the same whatever the processing form (fresh leaves or meal).The intake capacity of cocoyam leaves18 higher when distributed Into meal (95 vs.408g1d). In opposite the Erythrina fresh leaves are best Ingested (246 va, 488 g 1dl. Results on the nutrltlonal value of tropical foliage show they have low energy density between 6.5 and 8.2 MJ1kg DM. The determlnation of amino acid profile show that the amina acids of cocoyam and sweet potato leaves are more dlgestible than the erythrina and cassava leaves. Ultlmately digestible lysine contents were 5.3 g/kg DM for potato and 6.3 g / kg DM for the cocoyam. ln conclusion, ingestion, and energy and protein content of leaves from one sheet to another depends on its fiber content but aIso according to their tannin. In practice,the leaves of sweet potato and cocoyam are the most Interesting for the realization of diet

http://www.theses.fr/2011AGUY0398/document

Éditeur(s) : HAL CCSD IOS Press
Résumé : International audience
Cancer is generally conceived as a dedifferentiation process in which quiescent post-mitotic differentiated cells acquire stem-like properties and the capacity to proliferate. This view holds for the initial stages of carcinogenesis but is more questionable for advanced stages when the cells can transdifferentiate into the contractile phenotype associated to migration and metastasis. Singularly from this perspective, the hallmark of the most aggressive cancers would correspond to a genuine differentiation status, even if it is different from the original one. This seeming paradox could help reconciling discrepancies in the literature about the pro-or anti-tumoral functions of candidate molecules involved in cancer and whose actual effects depend on the tumoral grade. These ambiguities which are likely to concern a myriad of molecules and pathways, are illustrated here with the selected examples of chromatin epigenetics and myocardin-related transcription factors, using the human MCF10A and MCF7 breast cancer cells. Self-renewing stem like cells are characterized by a loose chromatin with low levels of the H3K9 trimetylation, but high levels of this mark can also appear in cancer cells acquiring a contractile-type differentiation state associated to metastasis. Similarly, the myocardin-related transcription factor MRTF-A is involved in metastasis and epithelial-mesenchymal transition, whereas this factor is naturally enriched in the quiescent cells which are precisely the most resistant to cancer: cardiomyocytes. These seeming paradoxes reflect the bistable epigenetic landscape of cancer in which dedifferentiated self-renewing and differentiated migrating states are incompatible at the single cell level, though coexisting at the population level. © 2016-IOS Press and the authors. All rights reserved.
ISSN: 0888-6008

hal-01367146
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367146
DOI : 10.3233/BD-150210
PUBMED : 27177343

Résumé : This study is inserted within the research project Risco, which aims at understanding the causes of oysters mortalities in the bay of Quiberon, since 2006. The objective was to test the feasability of an automatic segmentation of sonar images devoted to the distinction of molluscs (oysters and crepidulas) and sedimentary substrate. The method tested was of the type "segmentation dirigée basée région", implemented on the software SonarScope. It could be applied successfully only on muddy sediment where it succeeded to identify the shellfish sectors with negligeable error. However the distinction between oysters and crepidulas proved to be very delicate. A generalization to other sectors of the bay will be attempted.
Dans le cadre du projet RISCO sur la compréhension des facteurs de mortalité d'huîtres en Baie de Quiberon (France), l'objectif du stage était de tester la possibilité d'une segmentation automatique d'imagerie sonar en vue de distinguer les faciès coquilliers (huîtres et crépidules) du substrat sédimentaire. La méthode testée était de type « segmentation dirigée basée région » implémentée sous le logiciel SonarScope. Cette approche testée uniquement en secteur vaseux s'est montrée capable de détecter sans confusion les secteurs coquilliers. La distinction entre crépidules et huîtres s'est par contre avérée pour le moment très délicate. Une généralisation a d'autres secteurs sédimentaires de la Baie reste à menée.

Droits : 2011 Ifremer, UBS
http://archimer.ifremer.fr/doc/00128/23946/21911.pdf
http://archimer.ifremer.fr/doc/00128/23946/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
As climate change continues to impact socio-ecological systems, tools that assist conservation managers to understand vulnerability and target adaptations are essential. Quantitative assessments of vulnerability are rare because available frameworks are complex and lack guidance for dealing with data limitations and integrating across scales and disciplines. This paper describes a semi-quantitative method for assessing vulnerability to climate change that integrates socio-ecological factors to address management objectives and support decision-making. The method applies a framework first adopted by the Intergovernmental Panel on Climate Change and uses a structured 10-step process. The scores for each framework element are normalized and multiplied to produce a vulnerability score and then the assessed components are ranked from high to low vulnerability. Sensitivity analyses determine which indicators most influence the analysis and the resultant decision-making process so data quality for these indicators can be reviewed to increase robustness. Prioritisation of components for conservation considers other economic, social and cultural values with vulnerability rankings to target actions that reduce vulnerability to climate change by decreasing exposure or sensitivity and/or increasing adaptive capacity. This framework provides practical decision-support and has been applied to marine ecosystems and fisheries, with two case applications provided as examples: (1) food security in Pacific Island nations under climate-driven fish declines, and (2) fisheries in the Gulf of Carpentaria, northern Australia. The step-wise process outlined here is broadly applicable and can be undertaken with minimal resources using existing data, thereby having great potential to inform adaptive natural resource management in diverse locations.
ISSN: 0308-597X

hal-01380403
https://hal-univ-perp.archives-ouvertes.fr/hal-01380403
DOI : 10.1016/j.marpol.2016.09.024

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
During the GWADASEIS cruise (Lesser Antilles volcanic arc, February-March 2009) a very high resolution (VHR) seismic-reflection survey was performed in order to constrain Late Quaternary to Present faulting. The profiles we obtained evidence frequent "ponding" of reworked sediments in the deepest areas, similar to the deposition of Mediterranean "homogenites". These bodies are acoustically transparent (few ms t.w.t. thick) and are often deposited on the hanging walls of dominantly normal faults, at the base of scarps. Their thickness appears sufficient to compensate (i.e. bury) co-seismic scarps between successive earthquakes, resulting in a flat and horizontal sea floor through time. In a selected area (offshore Montserrat and Nevis islands), piston coring (4 to 7 m long) was dedicated to a sedimentological analysis of the most recent of these particular layers. It corresponds to non-stratified homogenous calcareous silty sand (reworked calcareous plankton and minor volcanoclastics). This layer can be up to 2 m thick, and overlies finegrained hemipelagites. The upper centimeters of the latter represent the normal RedOx water/sediment interface. 210Pb and 137Cs activities lack in the massive sands, while a normal profile of unsupported 210Pb decrease is observed in the hemipelagite below, together with a 137Cs peak correspond- ing to the Atmospheric Nuclear Experiments (1962). The RedOx level was thus capped by a recent instantaneous major sedimentary event considered as post-1970 AD; candidate seismic events to explain this sedimentary deposits are either the 16 March 1985 earthquake or the 8 October 1974 one (Mw=6.3 and Mw=7.4, respectively). This leads to consider that the syntectonic sedimentation in this area is not continuous but results from accumulation of thick homogenites deposited after the earthquakes (as observed in the following weeks after Haiti January 2010 event, McHugh et al., 2011). The existence of such deposits suggests that, in the area of study, vertical throw likely results from cumulated effects of separated earthquakes rather than from aseismic creep. Examination of VHR profiles shows that all major co-seismic offsets are recorded in the fault growth sequence and that co-seismic offsets can be precisely estimated. By using a sedimentation rate deduced from 210Pb decrease curve (0.5 mm yr−1) and taking into account minor reworking events detected in cores, we show that the Redonda system may have been responsible for five >M6 events during the last 34 000 yr. The approach presented in this work differs from fault activity analyses using displaced sets of isochronous surfaces and postulating co-seismic offsets. Combining VHR seismic imagery and coring we can decipher co-seismic vs. slow continuous displacement, and thus actually estimate the amplitude and the time distribution of major co-seismic offsets.
ISSN: 1561-8633

insu-00844581
https://hal-insu.archives-ouvertes.fr/insu-00844581
https://hal-insu.archives-ouvertes.fr/insu-00844581/document
https://hal-insu.archives-ouvertes.fr/insu-00844581/file/nhess-12-1755-2012.pdf
DOI : 10.5194/nhess-12-1755-2012

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The early 2000s marked the end of the Golden age of the antibiotics and the beginning of the awareness on the potential threat to human health due to the dissemination of antimicrobial resistance. As a base-line study, we investigated the antimicrobial susceptibility of 99 strains of non-O1/non-O139 Vibrio cholerae isolated fromwastewater and shellfish in 2000/2001 within La Rance estuary (Brittany, France). All isolates were susceptible to amoxicillin-clavulanic acid, cefotaxime, imipenem, chloramphenicol, nalidixic acid, ciprofloxacin, norfloxacin, amikacin, gentamicin, tetracycline, doxycycline, trimethoprim-sulfamethoxazole, and erythromycin. The only resistances were to streptomycin, sulfonamides and ampicillin: 54.6% of the isolates had acquired resistance to at least one antimicrobial agent among them and only six isolates from cockles were multidrug resistant. On the basis of the distribution of a limited selection of resistance associated genes, our study shows that V. cholerae can constitute an environmental reservoir for these genes. However, none of our isolates harbored integron. This result casts doubt on the capacity of non-O1/non-O139 V. cholerae to acquire resistance-associated genes in such context, and on its potential role of indicator of the dissemination of antimicrobial resistance in the aquatic environment.
ISSN: 1664-302X

hal-01616065
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616065
DOI : 10.3389/fmicb.2017.01637
PUBMED : 28955305

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
More than 10 years of geodetic measurements demonstrate an uplift rate of 1–3 mm/yr of the high topography region of the Western Alps. By contrast, no significant horizontal motion has been detected. Two uplift mechanisms have been proposed: (1) the isostatic response to denudation responsible for only a fraction of the observed uplift and (2) the rebound induced by the Wurmian ice cap melting which predicts a broader uplifting region than the one evidenced by geodetic observations. Using a numerical model to fit the geodetic data, we show that a crustal viscosity contrast between the foreland and the central part of the Alps, the latter being weaker with a viscosity of 1021 Pa s, is needed. The vertical rates are enhanced if the strong uppermost mantle beneath the Moho is interrupted across the Alps, therefore allowing a weak vertical rheological anomaly over the entire lithosphere.
ISSN: 0094-8276

hal-01332757
https://hal.archives-ouvertes.fr/hal-01332757
DOI : 10.1002/2016GL067821

Éditeur(s) : HAL CCSD
Résumé : Session "Posters"
National audience
Nous présentons une méthode permettant la mesure complète de la pose de la tête lors de captures vidéo monoculaires. Ce procédé utilise un modèle de visage et de texture précis. Le modèle facial, construit à partir d'une distribution de scans 3D haute résolution de visages, permet de générer des densités adaptées aux résolutions effectives. L'étape d'initialisation de la position du modèle est cruciale car elle conditionne le suivi ultérieur de la pose. Nous proposons ainsi d'utiliser une métrique composite construite sur des textures extraites de trois bases de données différentes. L'algorithme est alors capable de suivre le visage dans de vastes plages de poses avec une grande précision. Nous proposons des séquences vidéo de test dotées de vérité-terrain de pose précise et indépendante (précision de 0.1 degrés RMS)
Actes de la conférence RFIA 2012
Lyon, France

hal-00656565
https://hal.archives-ouvertes.fr/hal-00656565
https://hal.archives-ouvertes.fr/hal-00656565/document
https://hal.archives-ouvertes.fr/hal-00656565/file/rfia2012_submission_118.pdf

Éditeur(s) : Elsevier
Résumé : Polyploids can be defined as organisms with one or more additional chromosome sets with respect to the number most frequently found in nature for a given species. Triploids, organisms with three sets of homologous chromosomes, are found spontaneously in both wild and cultured populations and can be easily induced in many commercially relevant species of fish and shellfish. The major consequence of triploidy is gonadal sterility, which is of advantage in the aquaculture of molluscs since it can result in superior growth. In fish, the induction of triploidy is mainly used to avoid problems associated with sexual maturation such as lower growth rates, increased incidence of diseases and deterioration of the organoleptic properties. Triploidy can also be used to increase the viability of some hybrids, and is regarded as a potential method for the genetic containment of farmed shellfish and fish. This review focuses on some current issues related to the application of induced polyploidy in aquaculture, namely: 1) the artificial induction of polyploidy and the effectiveness of current triploidisation techniques, including the applicability of tetraploidy to generate auto- and allotriploids; 2) the performance capacity of triploids with respect to diploids; 3) the degree and permanence of gonadal sterility in triploids; and 4) the prospects for the potential future generalised use of triploids to avoid the genetic impact of escapees of farmed fish and shellfish on wild populations. Finally, directions for future research on triploids and their implementation are discussed. (C) 2009 Elsevier B.V. All rights reserved.
Aquaculture (0044-8486) (Elsevier), 2009-08 , Vol. 293 , N. 3-4 , P. 125-156

Droits : 2009 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6648.pdf
DOI:10.1016/j.aquaculture.2009.04.036
http://archimer.ifremer.fr/doc/00000/6648/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La perspective d’un classement en « cœur de parc » des îlets Pigeon, haut lieu de la plongée sous-marine, relance les débats autour de la place des sports de nature dans le Parc national de la Guadeloupe. Faut-il craindre une interdiction de la plongée sous-marine en cœur de parc, comme ce fut le cas pour le canyoning, suite au conflit environnemental entourant cette pratique ? La réglementation est-elle toujours de mise, alors que la loi sur les parcs de 2006 exhorte les parcs à s’engager dans des démarches partenariales, afin de bâtir un projet de territoire reposant sur les principes du développement durable et de solidarité écologique entre le cœur de parc et ses espaces environnants ? Parallèlement, si le Parc doit passer d’une gestion de crises, souvent hésitante et parfois arbitrale, à une gestion concertée, de quel potentiel de coopération dispose-t-il pour dépasser des situations de conflits potentiels comme celle des îlets Pigeon ? Existe-t-il un effet d’apprentissage du conflit du canyoning capable de modeler ce potentiel de coopération ?
The probability that the Pigeon Islands, a Mecca for diving, will be classified as a protected “heart of park”, reopens the debate about outdoor sports in the National Park of Guadeloupe. Should we be worried about the prohibition of diving in this “heart of park”, as has happened in the case of canyoning, following an environmental conflict around this practice? Are regulations always acceptable, when at the same time the law on the national parks of 2006 exhorts the parks to make a commitment to participatory initiatives, and to create projects based on the principles of sustainable development and ecological solidarity between the heart of park and its surrounding spaces? At the same time, if the Park has to develop from a crisis management style, with hesitating and arbitrary decisions, to a more cooperative management style, what potential is there to use cooperation to overcome possible conflict situations such as the Pigeon Islands? Are there lessons to be learned from the conflict surrounding the canyoning, which would help model the process and benefits of cooperation?
Guadeloupe

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.3608
http://journals.openedition.org/etudescaribeennes/3608

Éditeur(s) : HAL CCSD Kluwer Academic Publishers
Résumé : International audience
The interlocking leaves of tank-forming bromeliads (Bromeliaceae) collect rainwater and detritus, thus creating a freshwater habitat for specialized organisms. Their abundance and the possibility of quantifying communities with accuracy give us unparalleled insight into how changes in local to regional environments influence community diversity in small water bodies. We sampled 365 bromeliads (365 invertebrate communities) along a southeastern to northwestern range in French Guiana. Geographic locality determined the species pool for bromeliad invertebrates, and local environments determined the abundance patterns through the selection of traits that are best adapted to the bromeliad habitats. Patterns in community structure mostly emerged from patterns of predator species occurrence and abundance across local-regional environments, while the set of detritivores remained constant. Water volume had a strong positive correlation with invertebrate diversity, making it a biologically relevant measure of the pools' carrying capacity. The significant effects of incoming detritus and incident light show that changes in local environments (e.g., the conversion of forest to cropping systems) strongly influence freshwater communities. Because changes in local environments do not affect detritivores and predators equally, one may expect functional shifts as sets of invertebrates with particular traits are replaced or complemented by other sets with different traits.
Hydrobiologia

hal-00845572
https://hal.archives-ouvertes.fr/hal-00845572

Éditeur(s) : HAL CCSD Elsevier
Résumé : Detailed sedimentological investigations on numerous outcrops and drill-core sections in the 2.1-Ga-old Franceville basin, Gabon, provide evidence for a large-scale injectite network. The injectites were formed by the injection of sands through a thickness of about 150 m of the FB1 Member, and now cover a minimum area of 70 km2 corresponding to the Bangombé plateau, but are also recognized close to Franceville 35 km farther south-east. The injectite lithology corresponds to a mud- or carbonate-supported sandstone characterized by a loose and uncompacted fabric contrasting with the host-rock. Because the injectites are often parallel to subparallel to the stratification, they were misinterpreted as depositional beds by previous authors. At outcrop, the injectite bodies exhibit sill, dyke, wing and protrusive geometries emplaced during early burial within poorly compacted material, with partial wall erosion and dissociation. The source of the sand material is attributed to a channel-levee turbidite depositional system located in the lower part of the FB1 Member. These deposits were buried by a thick biochemical muddy cap deposited during a starvation phase, which increased the seal capacity of the system. This type of architecture has a high potential to develop compaction disequilibrium during burial. Moreover, in the case of the Francevillian injectites, the abundance of microbial organic matter favoured early methane degassing and lateral charging of the sand reservoir. The overpressure in the channels was periodically released during early burial, through the effect of rapid sedimentary and tectonic loading, and possible seismic activity. The fluidized sand was injected according to a symmetrical wing pattern. Thus, the injected masses caused a local decrease in the grade of the lateritic manganese ore deposit of the Bangombé plateau.
ISSN: 0301-9268

hal-01667217
https://hal.archives-ouvertes.fr/hal-01667217
DOI : 10.1016/j.precamres.2017.09.022

Éditeur(s) : HAL CCSD
Résumé : Weather stations are constantly provided with thousands of satellite images with a view to anticipating the progress of natural phenomenons. This constant flow ofinformation requires speed and a strict analysis. Consequently, it is absolutely necessary to implement systems capable of working night and day, in order to make assessments. In this article, we suggest a method relying on pattern recognition investigation techniques, such as segmentation and classification. These techniques will be used to locate and discriminate the banks of clouds coming from images picked up by the GOES geostationary satellite. Treatment of the cloud shapes which have been found can be carried out, using operations, such as mathematical morphology, so as to draw discriminating characteristics. Classifier systems are used in order to interpret the characteristics which have been obtained and to conduct cloud classification.
15th Meeting of the Caribbean Academy of Sciences
Gosier, Guadeloupe

hal-00524903
https://hal.archives-ouvertes.fr/hal-00524903

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Expeditions 304 and 305 of the Integrated Ocean Drilling Program cored and logged a 1.4 km section of the domal core of Atlantis Massif. Postdrilling research results summarized here constrain the structure and lithology of the Central Dome of this oceanic core complex. The dominantly gabbroic sequence recovered contrasts with predrilling predictions; application of the ground truth in subsequent geophysical processing has produced self-consistent models for the Central Dome. The presence of many thin interfingered petrologic units indicates that the intrusions forming the domal core were emplaced over a minimum of 100-220 kyr, and not as a single magma pulse. Isotopic and mineralogical alteration is intense in the upper 100 m but decreases in intensity with depth. Below 800 m, alteration is restricted to narrow zones surrounding faults, veins, igneous contacts, and to an interval of locally intense serpentinization in olivine-rich troctolite. Hydration of the lithosphere occurred over the complete range of temperature conditions from granulite to zeolite facies, but was predominantly in the amphibolite and greenschist range. Deformation of the sequence was remarkably localized, despite paleomagnetic indications that the dome has undergone at least 45 degrees rotation, presumably during unroofing via detachment faulting. Both the deformation pattern and the lithology contrast with what is known from seafloor studies on the adjacent Southern Ridge of the massif. There, the detachment capping the domal core deformed a 100 m thick zone and serpentinized peridotite comprises similar to 70% of recovered samples. We develop a working model of the evolution of Atlantis Massif over the past 2 Myr, outlining several stages that could explain the observed similarities and differences between the Central Dome and the Southern Ridge.
ISSN: 0148-0227

hal-00617528
https://hal.archives-ouvertes.fr/hal-00617528
https://hal.archives-ouvertes.fr/hal-00617528/document
https://hal.archives-ouvertes.fr/hal-00617528/file/2010JB007931.pdf
DOI : 10.1029/2010JB007931

Éditeur(s) : Elsevier
Résumé : The blue shrimp Litopenaeus stylirostris was exposed to pond sediment for 48 h and its physiological response was studied in relation to molt stage. Shrimp were maintained in cages within a semi-intensive pond after 4 months of rearing. Hypoosmoregulatory capacity (hypo-OC), magnesium ions (Mg ions), glucose, total proteins and oxyhaemocyanin were assayed in haemolymph. An increase of 370% to 500% in Mg ions concentration and 200% to 266% in glucose concentration, and a decrease in hypo-OC in shrimp maintained close to the centre of the pond indicated a short-term stress response in all molt stages. Indicators of water and sediment pore water quality were within normal operating limits, however this area was characterized by high water content and relatively high total ammonia nitrogen in pore water of sediment. To a lesser extent, shrimp maintained in two other stations also presented a stress response. Physiological response of shrimp in molt stage D, compared to C/D-0 and D-2 seems to indicate that shrimp were more sensitive to environment at this stage. The use and choice of physiological parameters to detect shrimp stress in a pond are discussed.
Aquaculture (0044-8486) (Elsevier), 2006-03 , Vol. 253 , N. 1-4 , P. 703-711

Droits : 2005 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2006/publication-1675.pdf
DOI:10.1016/j.aquaculture.2005.09.008
http://archimer.ifremer.fr/doc/00000/1675/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Three soil DNA extraction procedures (homemade protocols and commercial kit) varying in their practicability were applied to contrasting soils to evaluate their efficiency in recovering: (i) soil DNA and (ii) bacterial diversity estimated by 16S rDNA pyrosequencing. Significant differences in DNA yield were systematically observed between tested procedures. For certain soils, 10 times more DNA was recovered with one protocol than with the others. About 15 000 sequences of 16S rDNA were obtained for each sample which were clustered to draw rarefaction curves. These curves, as well as the PCA ordination of community composition based on OTU clustering, did not reveal any significant difference between procedures. Nevertheless, significant differences between procedures were highlighted by the taxonomic identification of sequences obtained at the phylum to genus levels. Depending on the soil, differences in the number of genera detected ranged from 1% to 26% between the most and least efficient procedures, mainly due to a poorer capacity to recover populations belonging to Actinobacteria, Firmicutes or Crenarchaeota. This study enabled us to rank the relative efficiencies of protocols for their recovery of soil molecular microbial biomass and bacterial diversity and to help choosing an appropriate soil DNA extraction procedure adapted to novel sequencing technologies.
ISSN: 1751-7915

hal-01546177
https://hal.archives-ouvertes.fr/hal-01546177
DOI : 10.1111/j.1751-7915.2011.00307.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The quasi-equilibrium approximation is acceptable when molecular interactions are fast enough compared to circuit dynamics, but is no longer allowed when cellular activities are governed by rare events. A typical example is the lactose operon (lac), one of the most famous paradigms of transcription regulation, for which several theories still coexist to describe its behaviors. The lac system is generally analyzed by using equilibrium constants, contradicting single-event hypotheses long suggested by Novick and Weiner (1957). Enzyme induction as an all-or-none phenomenon. Proc. Natl. Acad. Sci. USA 43, 553-566) and recently refined in the study of (Choi et al., 2008. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322, 442-446). In the present report, a lac repressor (LacI)-mediated DNA immunoprecipitation experiment reveals that the natural LacI-lac DNA complex built in vivo is extremely tight and long-lived compared to the time scale of lac expression dynamics, which could functionally disconnect the abortive expression bursts and forbid using the standard modes of lac bistability. As alternatives, purely kinetic mechanisms are examined for their capacity to restrict induction through: (i) widely scattered derepression related to the arrival time variance of a predominantly backward asymmetric random walk and (ii) an induction threshold arising in a single window of derepression without recourse to nonlinear multimeric binding and Hill functions. Considering the complete disengagement of the lac repressor from the lac promoter as the probabilistic consequence of a transient stepwise mechanism, is sufficient to explain the sigmoidal lac responses as functions of time and of inducer concentration. This sigmoidal shape can be misleadingly interpreted as a phenomenon of equilibrium cooperativity classically used to explain bistability, but which has been reported to be weak in this system.
ISSN: 0022-5193

inserm-00818506
http://www.hal.inserm.fr/inserm-00818506
http://www.hal.inserm.fr/inserm-00818506/document
http://www.hal.inserm.fr/inserm-00818506/file/LacI-TeX.pdf
ARXIV : 1312.5566