Éditeur(s) : HAL CCSD
Résumé : International audience
We are interested in the e ect of some types of events on dispersion indexes such as the mean crowding. From a mathematical point of view, we consider that a distribution of individuals is a realization of a point process and we study the consequences of a stochastic point thinning on the model distributional properties. A case study is provided from counting of aphids of the cotton plant carried out before and after thunderstorm. The mortality rate due to the thunderstorm is analyzed according to characteristics of thunderstorms, leaf strata and larvae stages.
SSC Meeting

hal-00684234
https://hal.archives-ouvertes.fr/hal-00684234

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Phase equilibrium data pertaining to melting of simplified carbonated peridotite in the systems CaO-MgO-SiO2-CO2 and CaO-MgO-Al2O3-SiO2-CO2 at pressures of 10-26 GPa, corresponding to similar to 300-750 km depths in the Earth, are presented. In both the studied systems, liquid compositions, with changing crystalline phase assemblage, are carbonatitic throughout the studied pressure range. In the system CMS-CO2, melting phase relations are isobarically invariant; liquid is in equilibrium with forsterite + clinoenstatite + clinopyroxene + magnesite, forsterite + majorite + clinopyroxene + magnesite, wadsleyite + majorite + clinopyroxene + magnesite, ringwoodite + majorite + calcium-silicate perovskite + magnesite, magnesium-silicate perovskite + periclase + calcium-silicate perovskite + magnesite at 12, 14, 16, 20, and 26 GPa, respectively. In the system CMAS-CO2, a phase assemblage consisting of forsterite + orthopyroxene + clinopyroxene + magnesite + garnet + melt from 10 to 14 GPa is isobarically invariant. However, owing to the disappearance of orthopyroxene at pressures greater than 14 GPa, from 16 and up to at least 26 GPa, the solidus of simplified carbonated peridotite spans a divariant surface in pressure-temperature space. The liquid coexists with wadsleyite + clinopyroxene + garnet + magnesite, ringwoodite + calcium-silicate perovskite + garnet + magnesite, and magnesium-silicate perovskite + periclase + calcium-silicate perovskite + magnesite at 16, 20, and 26 GPa, respectively. A curious, and as yet unexplained, feature of our study is an abrupt drop in the solidus temperature between 14 and 16 GPa that causes a small amount of melting of carbonated mantle in the Transition Zone of the Earth. In the systems CMS-CO2 and CMAS-CO2 liquid compositions at 16 and 20 GPa are highly calcic bona fide carbonatites; however, these liquids revert to being magnesiocarbonatites at 10-14 and 26 GPa. In the system CMS-CO2, at 16 GPa we locate an isobaric invariant point consisting of wadsleyite + clinopyroxene + anhydrous B + magnesite + melt. The presence of anhydrous B at 16 GPa and 1475 degrees C is interesting, as it lies outside the composition space of the mantle peridotite analog we have studied. However, despite the presence of two highly magnesian silicate crystalline phases, wadsleyite and anhydrous B, at 16 GPa and 1475 degrees C, the liquid composition remains calcic with molar Ca-number [Ca/(Ca + Mg) x 100] of about 63. The melting reactions at 16 and 20 GPa (with or without anhydrous B) show that lime-bearing crystalline silicates play a fairly large part in generating and controlling the composition of the liquids. At 16 GPa, in the system CMS-CO2, we also report an experimental run at 1575 degrees C, in which liquid coexists with only wadsleyite and majorite. The liquid composition is less calcic (Ca-number 54) than that for other runs at lower temperatures, but is still more calcic than liquids at 10-14 and 26 GPa in both the studied systems. At present, the likely cause for these changes in the reported phase relations is not known. For normally assumed mantle temperatures, melting in the Transition Zone of the Earth, owing to the presence of carbonate, is probably unavoidable. The depth range of the drop in the carbonated peridotite solidus closely matches that of commonly observed low seismic velocities at similar to 400-600 km depth in the Earth.
ISSN: 0022-3530

hal-00669945
https://hal.archives-ouvertes.fr/hal-00669945
DOI : 10.1093/petrology/egr048

Résumé : The brown shrimp Penaeus subtilis growth parameters has been studied by a lot of biologist since the fisheries of the three Guyana and Brazil has been created. The following through of the French Guyana’s fisheries had hallowed us to have an important database about shrimp boat lending. This atabase had permit us to fine the values used for predictive models helped by software like FISAT 2 in this case. This database had permit us to follow the evolution of the growth parameters along the fifteen last years. This study had given us different results which are interesting. First, the L∞ values used by the COPACO workshop (Isaac et al, 1992) are under evaluated and the K values aren’t. in a second time, the K values of the female brown shrimp are decreasing in a significant way since 1989, this case is not the male’s one. At last, we haven’t fond a link between meteorological variation in French Guyana (rainfall, river’s flow, sunshine) or biological data (biomass, density) and the K variations. A ecosystemic model feasibility study had been done for the French Guyana littoral. The data that are existing in the literature aren’t sufficient to build a model of this ecosystem. Future studies will perhaps provide the data that are missing to realize a first model
Les paramètres de croissance de la crevette Penaeus subtilis ont été étudiés par de nombreux auteurs depuis la création de la pêcherie sur le bouclier des Guyanes. Cependant le suivi permanent de cette pêcherie a permis d’avoir une base de données importante sur les débarquements des crevettiers et ainsi de chercher à affiner les estimations utilisées dans les modèles d’évaluation avec l’aide de logiciel prévus à cet effet comme FISAT 2 utilisé ici. Ces données peuvent permettre aussi de suivre l’évolution de ces paramètres au fil des années.Il ressort de cette étude plusieurs résultats intéressants. En premier lieu, les valeurs de L∞utilisées par le groupe de travail de la COPACO (Isaac et al, 1992) sont sous-évaluées et les valeurs de K ne le sont pas forcément. En second lieu, le K des femelles présente une tendance à la diminution sur les quinze dernières années (1989 – 2003), ce qui ne semble pas être le cas des mâles. Enfin, nous ne pouvons rattacher facilement les variations de K enregistrées à aucune donnée météorologique ne concernant que la Guyane (pluviosité, débit des fleuves, insolation), ni à certaines données biologiques (biomasse, densité). La faisabilité d’un modèle écosystémique du littoral a aussi été étudiée. Il en ressort que dans l’état actuel des connaissances sur l’écosystème du littoral guyanais la réalisation d’un modèle n’est pas possible. Mais des campagnes d’études à venir pourraient permettre de recueillir suffisamment de données pour pouvoir dresser un premier modèle.

Droits : 2004 Ifremer
http://archimer.ifremer.fr/doc/00077/18859/16433.pdf
http://archimer.ifremer.fr/doc/00077/18859/

Éditeur(s) : Université de Paris 6 – Pierre et Marie Curie
Résumé : Since 1997, a new pathology seasonally occurs in new caledonian shrimp farms during the warm season and was named Summer Syndrome. Diseased Litopenaeus stylirostris shrimp suffer from a septicemic vibriosis which was attributed to V. nigripulchritudo. Preliminary studies based on a collection of V. nigripulchritudo strains have brought to light different virulence levels according to experimental infections results; three virulence statuses were defined: highly (HP), moderately (MP) and non pathogenic (NP). The aim of this work was to genetically characterize virulent V. nigripulchritudo strains. In a first step the genetic diversity of 58 V. nigripulchritudo strains was analyzed by MLST and AP-PCR, revealing a cluster of HP and MP strains, characterized by a low genetic variability and that includes all Summer Syndrome-associated isolates. This confirms the emergence of one cluster of pathogenic V. nigripulchritudo simultaneously with the emergence of the Summer Syndrome ; in a second step, 368 genetic markers of virulence were identified by a Suppressive Subtractive Hybridization performed between the genomes of a HP strain and a genetically close, NP isolate; the distribution of the screened SSH fragments was studied in 58 V. nigripulchritudo isolates by macro-array: 78 DNA fragments were selected, allowing to characterize clusters identified and pathogenic statuses; 13 are specific of the HP strains involved in Summer Syndrome. Interestingly, 10 of these markers are carried by a plasmid pSFn1 that contains sequences highly similar to those of a plasmid pAK1, detected in Vibrio shilonii, a coral pathogen. The origin and consequences of this plasmid acquisition are discussed.
Depuis 1997, les élevages de crevettes en Nouvelle-Calédonie sont confrontés à une nouvelle maladie, le Syndrome d'été, une vibriose septicémique dont l'agent étiologique est Vibrio nigripulchritudo. Les résultats d'infection expérimentale sur une collection de souches, ont montré l'existence de trois pathotypes distincts : hautement (HP), moyennement (MP) et non pathogène (NP). L'étude du polymorphisme génétique de 58 souches par typage moléculaire en MLST et AP-PCR, a mis en évidence un groupe phylogénétique particulier caractérisé par un très faible degré de variabilité génétique (confirmant l'émergence de ce groupe en parallèle à l'émergence du Syndrome d'été) et constitué uniquement de souches HP (dont toutes celles associées au Syndromed'été) et de souches MP. Afin d'identifier des marqueurs génétiques de la virulence des souches responsables du Syndrome d'été, et parmi ces marqueurs des gènes codant potentiellement pour des effecteurs de la virulence, une approche soustractive par SSH a été développée entre une souche HP de type Syndrome d'été et une souche NP : 368 marqueurs génétiques ont ainsi été mis en évidence ; la distribution de ces marqueurs a été étudiée chez les 58 souches de la collection par une approche en macroarray : 78 marqueurs ont été sélectionnés, qui permettent de caractériser les différents groupes phylogénétiques et les différents pathotypes, dont 13 fragments spécifiques des souches HP type Syndrome d'été. Parmi ces 13 fragments, 10 ont été localisés sur le plasmide pSFn1 qui a été entièrement séquencé. Ce même plasmide a été purifié uniquement des souches HP de type Syndrome d'été. Par ailleurs, une très forte homologie a été mise en évidence entre pSFn1 et pAK1, un autre plasmide également séquencé et retrouvé chez la souche V. shilonii AK1, responsable du blanchiment du corail Oculina patagonica en Méditerranée. Ces résultats ont ouvert la discussion sur le rôle de pSFn1 dans la virulence de V. nigripulchritudo.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-3906.pdf
http://archimer.ifremer.fr/doc/00000/3906/

Éditeur(s) : Inter-Research
Résumé : The marine environment is of special interest for studying hybridization between closely related taxa because of the high dispersal potential of planktonic larvae, such as those of most bivalve species. The oysters Crassostrea angulata and C. gigas are known to be very close genetically and entirely inter-fertile under controlled conditions. However, hybridization in the wild had not been investigated, mainly due to the lack of nuclear diagnostic markers. In the present paper, we first estimated genetic differentiation between these 2 closely related taxa using 8 microsatellite markers. Interestingly, 5 markers displayed significant differences of allele size between taxa. The subsequent sequencing of alleles of one of these microsatellites showed several mutational events, which suggested null alleles and homoplasy. The presence of 1 insertion/deletion event in its 5' flanking sequence enabled us to design a new bi-allelic ('C' and 'NC') nuclear PCR-restriction fragment length polymorphism (-RFLP) marker (CG44R). This, together with a mitochondrial DNA marker, was used to analyze populations of C. angulata and C. gigas. The CG44R allele frequencies were very different between C. angulata (f[C] = 0.91) and C. gigas (f[NC] = 0.92) populations. This analysis also provided evidence for hybridization between C. angulata and C. gigas in a wild Portuguese population where the 2 taxa are in contact due to recent transportation of C. gigas stocks for aquacultural production. Our results represent the first indication of hybridization between these 2 taxa in the natural environment, and contribute to knowledge of the evolutionary history of the Crassostrea genus.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2004 , Vol. 272 , P. 141-152

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2004/publication-3355.pdf
http://archimer.ifremer.fr/doc/00000/3355/

Éditeur(s) : Neidine Editeurs
Résumé : The text is the transcription of the oral presentation made on November 5th, 2014 in front of the National Assembly in Paris within the framework of the conference, organized by the FEDOM and the ACCIOM, entitled: " the economic and strategic stakes of South Pacific overseas French Territories: New Caledonia, French Polynesia, Wallis and Futuna : valuable lands, ocean of future ". After a presentation of the geographical context of the three communities: New Caledonia, Wallis and Futuna and French Polynesia, a first chapter develops their main advantages towards stakes in economic growth in terms of spaces, quality, biodiversity, geo-diversity, energy resources, know-how … A second chapter, after a reminder of the ambitions of the National Commission on Innovation focuses for each of the territories on the axes of new growth linked to the maritime potential which characterizes them. In conclusion we clarify all the interest which represent these three communities and their complementarities as sustainable development laboratories bound to the sea and the necessity of the elaboration of adequate support strategies..
Le texte est la transcription de la présentation orale effectuée le 5 novembre 2014 devant l’Assemblée Nationale à Paris dans le cadre de la conférence, organisée par la FEDOM et l’ACCIOM, intitulée : « Les enjeux économiques et stratégiques de l’outre-mer français du Pacifique : Nouvelle-Calédonie, Polynésie française, Wallis et Futuna , terres de valeurs, océan d’avenir ». Après une présentation du contexte géographique des 3 collectivités : Nouvelle-Calédonie, Wallis et Futuna et Polynésie française, un premier chapitre développe leurs atouts majeurs vis-à-vis d’enjeux de croissance en termes d’espaces, de qualité, de biodiversité, de géo-diversité, de ressources énergétiques, de savoir-faire… Un second chapitre, après un rappel des ambitions de la Commission Nationale Innovation se focalise pour chacun des 3 territoires sur les axes de croissance nouvelle liée au potentiel maritime qui les caractérise. En conclusion on explicite tout l’intérêt que représentent ces trois collectivités et leurs complémentarités comme laboratoires de développement durable lié à la mer et la nécessité de l’élaboration de stratégies d’accompagnement adéquates.
Tai Kona (2269-7535) (Neidine Editeurs), 2015-03 , N. 12 , P. 24-38

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00255/36615/35184.pdf
http://archimer.ifremer.fr/doc/00255/36615/

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
This paper presents a comparison of models for extreme rainfall and flood values. Based on a large set of thousands of rainfall and discharge data, the French ExtraFlo project showed that design estimate of extreme values based on the fitting of a distribution on a limited sample of maximum values is very inaccurate when only a few decades of observation are available. Some interesting alternatives are possible, using a regional approach, or historical data when available, or simulation methods, or sedimentological or geochemical signatures of flood deposits.
Cette communication présente les principaux résultats du projet ExtraFlo sur l'estimation des pluies et crues extrêmes. A partir d'un jeu de données conséquent de plusieurs milliers de stations, une procédure d'inter-comparaison a permis d'évaluer les performances d'une trentaine d'implémentations différentes issues de différentes combinaisons (modèle probabiliste, méthode d'estimation, cadre local / régional / mixte local et régional). Le projet ExtraFlo a permis de mettre en évidence le manque de robustesse des approches basées sur le traitement statistique d'une série de quelques dizaines d'années d'observation. Des alternatives intéressantes existent, basées sur l'exploitation des records de pluie et de débit à l'échelle d'une région, de la collecte de données historiques quand cela est possible, de méthodes de simulation basées sur le couplage d'un générateur d'averses avec un modèle hydrologique pour la transformation des pluies en débit, ou des traces morphologiques laissées par les crues anciennes.
ISSN: 0018-6368

hal-01128341
https://hal.archives-ouvertes.fr/hal-01128341
https://hal.archives-ouvertes.fr/hal-01128341/document
https://hal.archives-ouvertes.fr/hal-01128341/file/ly2014-pub00041933.pdf
DOI : 10.1051/lhb/2014010

Éditeur(s) : HAL CCSD
Résumé : International audience
Abstract In this paper we prove the convergence of the approximate proximal method for DC functions proposed by Sun et al [6]. Our analysis also permits to treat the exact method. We then propose an interesting result in the case where the second component of the DC function is differentiable and provide some computational experiences which proved the efficiency of our method.
Journal of Computational Mathematics,

hal-00780885
https://hal.univ-antilles.fr/hal-00780885

Éditeur(s) : HAL CCSD
Résumé : The presence of biological matter (biofilms) in deep geological sites for storage of, for instance, toxic elements or groundwater in aquifers was clearly proved. That biomass triggers physical and chemical processes which greatly modify the durability and the sustainability of the sites. These processes, mainly from oxidative/reductive reactions, are poorly understood. This is mainly due to the fact that former studies were done at the macroscopic level far away from the micrometric scale where relevant processes induced by bacteria take place. Investigations at microscopic level are needed. Thus, we developed an experimental set-up based on the combined use of optical microscopy (transmission), atomic force microscopy (AFM) and electrical and electro-chemical AFM microscopy (EC_AFM) in order to get simultaneous information on topographic and electro-chemical processes. The first highly sensitive step was to use AFM with biological samples in liquid environment: wepresent here a study about AFM imaging of living, moving or self-immobilized bacteria, in their genuine physiological liquid medium and in true in vivo conditions. No external immobilization protocol, neither chemical nor mechanical was needed. For the first time, the native gliding movements of Gram negative Nostoc cyanobacteria upon the surface were studied by AFM. AFM height and mechanical stiffness data were simultaneously acquired. From these, mechanical parameters, inner turgor pressure and Young modulus, were derived for different bacterial species (Anabaenopsis circularis, Rhodococcus wratislaviensis). Our study revealed that AFM imaging is thus possible on moving living species. These results open a large window on new studies of both dynamical phenomena of practical and fundamental interests such as the formation of biofilms and dynamic properties of bacteria in real physiological conditions. The second delicate step was to combine AFM and optical measurements with electrical ones. We mounted a new experimental set-up coupling real-time (i) monitoring of optical properties as the optical density (OD) evolution related to bulk bacterial growth in liquid or as the counting of number of bacteria adhering on the surface of the sample as well and (ii) electrical and electrochemical measurements. Furthermore, these results will shortly be applied to the optimized monitoring of the in-situ activity of bacteria consuming oil pollutants, following this way, in real-time, the bioremediation of an oilcontaminated soil (ANR ECOTECH_BIOPHY program).
La présence de matière biologique (biofilms) dans les sites de stockage géologique profond, d'éléments toxiques ou encore de l'eau potable des aquifères est maintenant clairement démontrée. Cette biomasse est à l'origine de processus physiques et chimiques qui modifient considérablement la durabilité et la pérennité des sites concernés. Ces processus, principalement de type oxydo-réductif, sont encore mal compris. Ceci est principalement dû aux méthodes d'investigation, principalement macroscopiques, loin de l'échelle micrométrique caractéristique des bactéries. Seules des études, basées sur des méthodes d'investigation locale, peuvent apporter les informations requises. Ainsi, nous avons développé un dispositif expérimental basé sur l'utilisation combinée de la microscopie optique (en transmission), la microscopie à force atomique (AFM) et la microscopie AFM en mode électrique et électrochimique (EC_AFM) afin d'obtenir des informations simultanées sur la topographie de l'échantillon et sur les processus électrochimiques à l'échelle des bactéries. La première étape sensible consistait à utiliser l'AFM sur des échantillons biologiques en milieu liquide: nous présentons ici les résultats de l'imagerie AFM en milieu liquide de plusieurs types de bactéries dans leurs conditions physiologiques naturelles (conditions in vivo). Aucun protocole d'immobilisation, ni chimique ni mécanique, n'a été nécessaire; et pour la première fois, les mouvements de reptation de cyanobactéries Nostoc ont été étudiés par l'AFM. Les études AFM ont permis d'acquérir des données topographiques mais aussi mécaniques : nous avons pu ainsi mesurer le module d'Young, la pression de turgescence de différentes souches bactériennes (Anabaenopsis circularis, Rhodococcus wratislaviensis). Cette étude complète, a révélé que l'imagerie AFM est donc possible sur des espèces vivantes en mouvement. Ces résultats ouvrent une grande fenêtre sur de nouvelles études d'intérêts tels que la formation de biofilms et les propriétés dynamiques de bactéries dans des conditions physiologiques réelles. La deuxième étape délicate était de combiner l'AFM aux mesures optiques et électriques. Nous avons développé un nouveau dispositif expérimental permettant (i) le suivi de l'évolution de la croissance bactérienne par la mesure des propriétés optiques comme la densité optique DO (pour le développement bactérien en volume - milieu planctonique) , ou l'analyse de l'image du substrat par comptage du nombre de bactéries sur la surface de l'échantillon (biofilm), et (ii) les mesures électriques et électrochimiques. L'ensemble de ces résultats sera prochainement appliqué au développement de nouveaux outils de surveillance d'une biodépollution de terrain contaminé par les hydrocarbures, par le suivi in situ et en temps réel de l'activité de bactéries dépolluantes (ECOTECH_BIOPHY ANR).
https://tel.archives-ouvertes.fr/tel-01044714

tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714/document
https://tel.archives-ouvertes.fr/tel-01044714/file/theseDhahri2013.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
The extraction of knowledge from social networks is an area that has experienced significant growth in recent years. Indeed, thanks to the improvement of storage and calculation capacities, and the heterogeneity of data that can currently be extracted, much effort has been made to go beyond traditional knowledge, by proposing new kinds of patterns that take into account the context. However, while many works were interested in designing new patterns of knowledge or in optimizing existing approaches, few studies have been focused in merging patterns and on the useful knowledge emerging from such fusions. In this work, we focus on two network clustering approaches, able to extract two distinct kinds of patterns, and we seek to understand both the intersections that can exist between them and the knowledge that emerges from their fusion. The first is the classical nodes clustering approach that consists in searching for communities into a network. The second is the search for frequent conceptual links, a new link clustering approach that aims identifying frequent links between groups of nodes sharing common attributes. We propose a set of original measures that aim to evaluate the amount of shared information between these patterns when they are extracted from a same network. These measures are applied to three datasets and demonstrate the interest in simultaneously considering several sources of knowledge.
Advances in Knowledge Discovery and Management (AKDM)

hal-01514227
https://hal.archives-ouvertes.fr/hal-01514227
DOI : 10.1007/978-3-319-45763-5_13

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
ABSTRACT: In the past decade, there has been an increasing number of studies on co-infections between worms and malaria. However, this increased interest has yielded results that have been at times conflicting and made it difficult to clearly grasp the outcome of this interaction. Despite the heterogeneity of study designs, reviewing the growing body of research may be synthesized into some broad trends: Ascaris emerges mostly as protective for malaria and its severe manifestations, whereas hookworm seems to increase malaria incidence. As efforts are made to de-worm populations in malaria endemic areas, there is still no clear picture of the impact these programmes have in terms of quantitative and qualitative changes in malaria.
ISSN: 1475-2875

inserm-00632065
http://www.hal.inserm.fr/inserm-00632065
http://www.hal.inserm.fr/inserm-00632065/document
http://www.hal.inserm.fr/inserm-00632065/file/1475-2875-10-259.pdf
DOI : 10.1186/1475-2875-10-259

Éditeur(s) : HAL CCSD
Résumé : Background and objectives.[br/] Dairy propionibacteria are isolated from various ecological niches, including soil, grass, silage, rumen, raw milk and dairy plants, showing great adaptability and robustness. Used as ripening starters in Swiss type cheeses, these food grade bacteria are described as nutraceutical producers and they release into the external medium short chain fatty acids (SCFA), folic acid, cobalamin and the bifidogenic 1,4- dihydroxy-2-naphthoic acid (DHNA). These compounds are known to play a pivotal role in the modulation of intestinal physiology through diet. Considering the pro-apoptotic potential of some of these metabolites, we investigated the potential of dairy products fermented by the main species, Propionibacterium freudenreichii, to prevent colon carcinogenesis. Methods.[br/] We developed a new fermented milk. Taking advantage of milk fractions, high and stable populations of P. freudenreichii were obtained in this product. It was tested in vitro on gastric HGT-1 and colic HT-29 cells with respect to the typical hallmarks of apoptosis. In vivo, the fermented milk was evaluated in piglets with respect to general health parameters and in human microbiota-associated rats, treated or not with dimethylhydrazine (DMH), with respect to intestinal proliferation and apoptosis. Results. Fermented milk induced cell death in both gastric and colon cancer cells. Cellular and molecular characterization of cells dying in response to SCFA treatment revealed cell cycle arrest, drop in intracellular ATP, depolarization of mitochondria, translocation of key apoptosis proteins, processing of caspases and fragmentation of the nucleus. Interestingly, the new fermented milk was shown to potentiate the cytotoxic effect of molecules used in cancer chemotherapy. In accordance, it modulated expression of key apoptotic proteins. In vivo, the fermented milk was evaluated in piglets. Daily oral gavage led to high colic P. freudenreichii populations, to modulation of the intestinal microbiota and modulation of intestinal cytokines. Promotion of piglets’ growth also revealed general probiotic effects of fermented milk. Considering that propionibacteria were metabolically active in the intestine, we further investigated their impact on colon carcinogenesis (induced by dimethylhydrazine, DMH) in human microbiota-associated rats. Consumption of selected strains of propionibacteria resulted in enhanced apoptotic depletion of DMH damaged epithelial cells, yet had no effect on neither proliferation nor apoptosis in healthy rats. Conclusions and perspectives.[br/] These results open new perspectives in the field of colon cancer cells prevention and/or treatment. The synergy with pro-apoptotic chemotherapy molecules suggests that such a fermented product may be proposed as a food supplement to enhance the effects of anticancer treatments.
colloque international « Nutrition and Cancer : Hot topics from biology to public health issues »
Paris, France

hal-01190452
https://hal.archives-ouvertes.fr/hal-01190452
PRODINRA : 201853

Résumé : The availability in interesting sites and the zootechnical performances of tropical fish are two impo rt ant assets in favor of the development of fish farming in the Caribbean islands. This repor presents a technical and financial analysis of red drum farming projects in floating cages in Martinique(French West Indies). This project analysis makes it possible to compare the economic feasability of a small-scale production system with that of a semi-industrial one submitted to different technical constraints. The main criteria of the project analysis are the profitability of the funded capital, the financial feasability during the buildup period, the profitability at a steady state and the cost price. Production costs are hi gher in the the small-scale enterprises than in the semi-industrial ones, thanks to better capita] productivity and better labour productivity. An analysis of sensitivity to the variations ofbiological and economical parameters is also contained in the report. The results of these studies indicate that Caribbean fish farming could be profitable, due to the rapid buildup of the facilities and to the short production cycles. Nevertheless, attention should be paid to the risk of storms and hurricanes in this part of the world. Moreover, the analysis of sensitivity highlights the great influence of seed price. [NOT CONTROLLED OCR]
Les bonnes performances zootechniques des poissons tropicaux et la disponibilité en sites propices sont deux atouts majeurs favorables au développement de l'aquaculture de poissons dans les îles des Caraïbes. Ce rapport présente l'adaptation d'un outil de simulation technico- économique à l'éleva ge de l'ombrine en cages flottantes dans le contexte martiniquais. Cet outil permet de disposer d'éléments de comparaison sur la faisabilité de deux systèmes de production, Fun de type artisanal et l'autre de type semi- industriel, soumis à des contraintes techniquesdifférentes : rentabilité du capital investi, faisabilité financière au démarrage, rentabilité en année de routine, prix de revient. Une analyse de sensibilité des résultats aux variations de paramètres biologiques et économiques est également présentée. L'analyse de ces projets fait apparaître une rentabilité satisfaisante de l'activité, liée à la rapidité de mise en route des installations et à la brièveté des cycles de production. Line grande attention doit être cependant portée sur les risques d'accidents climatiques fréquents dans cette région du globe (cyclone, mais aussi tempête...). L'analyse de sensibilité montre la grande influence du prix d'achat de l'alevin, en particulier sur les résultats de la variante artisanale, dont le coût de production de l'ombrine rendue à quai, est plus élevé que celui de la variante semi- industrielle. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1996/rapport-4019.pdf
http://archimer.ifremer.fr/doc/00000/4019/

Éditeur(s) : HAL CCSD
Résumé : il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : ACTIVITY_REPORT
Understanding genomic evolution in wild populations is of particular importance because evolution is a central process in our understanding of populations’ history and their future response to global changes. In addition to fundamental knowledge, the study of populations’ evolution has wide applications such as conservation/restoration genetics or epidemiology. Indeed, genetic diversity is the ‘fuel’ for populations’ evolution and adaptation to new conditions, and estimating the extent and the geographic structure of genetic diversity, as well as identifying the evolutionary forces behind (demography, gene flow, and adaptation) are thus major challenges in the current context of global changes. [br/]A particular attention is currently devoted to the process of genetic divergence in wild populations, with emphases on gene flow, local adaptation, and their interactions. Indeed, adaptation in wild populations is supported in many species by many kinds of experiments based on both quantitative phenotypic traits and molecular data. However, the processes governing populations’ evolution are poorly understood in the tropical rainforest of Amazonia, and the relative influence of neutral and adaptive processes are continuously discussed. [br/]I am a young scientist interested in the process of genomic divergence in wild (tree) populations. I aimed at understanding how evolution structures the genetic diversity and governs molecular divergence in wild populations, with particular emphases on gene flow and local adaptation. During five years as a young scientist, I worked on answering the following questions, focusing on two tree species occupying vulnerable areas: mainly [i]Eperua falcata[/i] in Amazonia and, to a lesser extent, [i]Abies alba[/i] in the Mediterranean area.[br/][u]Scientific questions:[/u][br/]- Which evolutionary drivers are responsible of the structure of genetic diversity in wild populations occupying wide areas? This question was addressed at different geographical scales: from large (regional) to very local (microgeographic) scales. [br/]- What is the relative influence of neutral (gene flow, inbreeding) and adaptive drivers in the process of genetic divergence?[br/]- Is microgeographic adaptation possible in spite of extensive gene flow between populations occupying the extreme boundaries of an ecological gradient? [br/]- What is the extent of natural selection in the (whole) genome of wild populations? [br/][br/]My research work is at the interface between three promising disciplines: Evolutionary genomics (i.e. the study of populations evolution and the evolutionary drivers behind), Bioinformatics (i.e. the treatment of next-generation data), and Bayesian modelling (i.e. the empirical calibration of complex mechanistic model). I intend to take advantage of the recent advances in sequencing and informatic technologies to bring up to date the field of ecological genetics and evolutionary biology, by developing modern research strategies to study the process of genomic divergence in wild populations.
https://hal.archives-ouvertes.fr/hal-01204218

hal-01204218
https://hal.archives-ouvertes.fr/hal-01204218
PRODINRA : 286326

Éditeur(s) : HAL CCSD
Résumé : International audience
We consider a second-order differential system with Hessian-driven damping . An interesting property of this system is that, after introduction of an auxiliary variable y , it can be equivalently written as a first-order system in time and space. This allows us to extend the analysis to the case of a convex lower semicontinuous potential and so to introduce constraints in the model. When considering the indicator function of a closed convex set, the subdifferential operator takes account of the contact forces. In this setting, by playing with the geometrical damping parameter, we can describe nonelastic shock laws with restitution coefficient. Taking advantage of the infinite dimensional framework, we introduce a nonlinear hyperbolic PDE describing a damped oscillating system with obstacle. The system is dissipative; in the convex case each trajectory weakly converges to a minimizer of the global potential energy function. Exponential stabilization is obtained under strong convexity assumptions.
Differential Equations & Applications

hal-00803214
https://hal.archives-ouvertes.fr/hal-00803214
https://hal.archives-ouvertes.fr/hal-00803214/document
https://hal.archives-ouvertes.fr/hal-00803214/file/Attouch-Mainge-Redont-30August2011.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The emergent domain known as “Kasserine Island” in central Tunisia, to the West of the North–South Axis, was emerging during the Turonian. This area has undergone several changes during the Cretaceous–Eocene period. In the present study, the compilation of surface and sub-surface data provided new information about the boundaries variations of the emerged domain. The analysis of paleogeographic maps allowed the identification of three distinct stages of evolution. The first stage extents from the Middle Turonian to the Lower Maastrichtian where the emergent domain covers the area extending from Jebels Selloum-Sidi Aich in the West to Jebel Bouhedma in the East. The boundaries of this area coincide with the E–W Kasserine fault to the North, the N–S Lessouda-Boudinar fault in the East and the N 120 el Mech-Souinia flexure at the South. This emersion contemporaneous with a high eustatic level is most likely related to tectonic activity. The extensional tectonic regime that is characterized by a NE–SW minimal horizontal stress, has reactivated border faults with a normal component. The interference of the tilting of these border faults was at the origin of the emergence of this domain. The ascent of the Triassic salt may also have contributed in this uplift.In the second stage, the emerged domain has reached its maximum expansion to the North, the West and the South during the Middle Maastrichtian–Paleocene period. Its northern limit is irregular, while the southern limit coincides with the N120 Gafsa fault and the E–W fault of Jebels Orbata-Bouhedma. The N–S Lessouda-Boudinar fault forms the eastern limit. This expansion is mostly related to the global eustatic fall that is well characterized during this period, and partly to the compressive tectonic activity.The Lower Eocene is characterized by a marine transgression that has interested the northern edge of the Island, where the Ypresian deposits are discordant on older series. This edge was irregular and marked by the Gulf of Sbiba. The eastern, the southern, and the western boundaries kept the same shape as that of the previous stage. The compressive tectonic regime, characterized by a NW–SE maximum horizontal stress, is accentuated. This constraint state has generated NE–SW folds and NW–SE grabens. Some of these structures allowed the accumulation of a thick phosphate deposits at their edges, and continental deposits in the emerged area.During the Middle to Upper Eocene, the emergent area narrowed further at the North. The deposits are transgressive and discordant on older series. The Other limits always coincide with the Gafsa fault, the Jebels Orbata-Bouhedma and Jebels Lessouda-Boudinar faults. This period is characterized by the filling of the Gafsa basin by evaporate deposits before its emergence in the Oligocene. As a result, the southern-central Tunisia emerged as one area.
ISSN: 0899-5362

hal-01243490
https://hal.archives-ouvertes.fr/hal-01243490
DOI : 10.1016/j.jafrearsci.2015.07.027

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Cet article analyse les interactions socioculturelles d’acteurs multiples ayant des intérêts divergents en regard de la reconnaissance d’un espace naturel à titre d’aire protégée, plus particulièrement le Parc marin du Saguenay–Saint-Laurent (PMSSL), situé au Québec à l’embouchure de la rivière Saguenay. Compris dans le sens d’espace socialisé et investi de valeurs parfois contradictoires, ce territoire constitue le cas empirique sur lequel repose l’analyse des logiques d’acteurs. La perspective ici mise de l’avant repose à la fois sur une décision de l’État de créer et de mettre en valeur une aire marine ainsi que sur la participation active des collectivités territoriales dans la gestion du patrimoine environnemental et culturel lié à leur identité propre. Si la participation des communautés locales apparaît comme un élément essentiel et démocratique dans la reconnaissance d’un espace naturel protégé, il apparaît tout aussi capital de bien saisir la logique qui sous-tend les actions de l’État et du milieu. Les résultats empiriques montrent deux logiques d’action distinctes à l’œuvre, une logique classique de planification et implantation stratégiques de l’état réservant une espace de participation programmée pour la communauté et une logique stratégique communautaire à caractère émergent, de portée moins englobante, mais adaptable aux nouvelles réalités et contraintes gouvernementales. Les résultats peuvent être représentés sous forme d’un processus de gouvernance à l’œuvre, un caractérisé par une participation de base, mais un qui suggère qu’un processus plus hautement démocratique nécessiterait un plus haut degré de vigilance dans la perspective communautaire, suffisante pour produire une meilleure symétrie de pouvoir démocratique entre l’État.
This paper analyzes the socio-cultural dynamic between multiple stakeholders with divergent interests concerning the formalization of the status of a natural area into a protected area. The empirical case under analysis is the creation of the Saguenay Marine Park located at the confluence of the St-lawrence and Saguenay rivers in Québec, a rural region represented by different localities showing some contradictions in socio-economic values and agendas. The dual perspective put forth is, first, the governmental decision one to create and promote a marine protected area, and second, the regional community one to participate in the process and adapt the management of their cultural and environmental heritage to their own perception of their socio-economic identity. The objective of analysis is to identify the logics of action underlying both processes. The empirical results show two distinct logics at work, a government logic of classic managerial planning and implementation into which the community has a programmed role and a community logic of emergent planning, less comprehensive in scope, but adaptable to the emerging realities and limitations of the governmnent one. They can be seen in tandem as representing a governance process at work, one with a basic participative character, but one which suggests that an enhanced democratic process entails a higher vigilance level from a community perspective, such as to produce a more even democratic symmetry of powers between the State and the regional community.
Québec

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.3565
http://journals.openedition.org/etudescaribeennes/3565

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The study of decay resistance in wood is of interest for wood end-users but also for the global carbon balance since wood biodegradation is a key driver of forest ecosystem functioning through its impacts on carbon and nutrient cycling. We studied the density and wood extractive contents in order to understand decay resistance against soil microflora after 90 days exposure of sapwood and heartwood from three Neotropical wood species known for their decay resistance: Bocoa prouacensis, Vouacapoua americana, Inga alba. Decay resistance was correlated with density more than wood extractive content. The results highlighted different decay resistance strategies. In B. prouacensis, both sapwood and heartwood were highly resistant due to the high density and high content of antifungal wood extractives. In V. americana heartwood, decay resistance was due to the high synergistic-acting wood extractive content. Conversely, with the least dense wood species I. alba, we found that decay resistance was due to the antifungal wood extractives synthesized early in the sapwood. In conclusion, we showed that the three wood species with the same level of heartwood decay resistance performance had different decay resistance strategies according to the anatomic and defensive wood traits.
ISSN: 0964-8305

hal-01321162
https://hal.archives-ouvertes.fr/hal-01321162
https://hal.archives-ouvertes.fr/hal-01321162/document
https://hal.archives-ouvertes.fr/hal-01321162/file/Art_Amusant_al_Diversity_decay_resistance_strategies_Int.Biodet.Biodegr._2014.pdf
DOI : 10.1016/j.ibiod.2014.06.012

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Clostridium difficile infection (CDI) is the primary cause of nosocomial diarrhoea in industrialised countries, usually occurring as a complication of antibiotic therapy in elderly patients. Landmark events contributed to boosting interest in CDI over the last 10 years, including the emergence of unusually severe and recurrent CDI due to the NAP1/BI/027 strain, as well as reports suggesting that CDI is also significantly encountered in patients previously considered at no risk, such as community-acquired CDI in patients with no recent antibiotic use, or CDI during pregnancy. Despite this growing interest from the medical community, we do not know the real dimensions of the disease for the following reasons: (i) despite comprehensive guidelines published in Europe and in the USA, most laboratories still use diagnostic tests with suboptimal sensitivity as a 'rule-out' test, hence a significant proportion of CDIs remain undiagnosed; (ii) use of PCR as a stand-alone test by others will probably overestimate the real incidence of CDI and jeopardise any comparison between institutions with different diagnostic procedures; and (iii) transversal studies, with optimum design and diagnostic tests, are rapidly outdated due to the dramatic changes in CDI epidemiology that may occur from one year to another. To get an accurate picture of the real dimensions of the CDI issue, we need more systematic use of an adequate and homogeneous diagnostic strategy in the field as well as the implementation of continuous monitoring of CDI incidence through surveillance programmes.
ISSN: 0924-8579

inserm-00863350
http://www.hal.inserm.fr/inserm-00863350
http://www.hal.inserm.fr/inserm-00863350/document
http://www.hal.inserm.fr/inserm-00863350/file/Clostridium_difficile_infections._Do_we_know_the_real_dimensionssur the_problem-accepted.pdf
DOI : 10.1016/j.ijantimicag.2013.04.009

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers Inc.
Résumé : International audience
An important issue in epilepsy research is to understand the structural and functional modifications leading to chronic epilepsy, characterized by spontaneous recurrent seizures, after initial brain insult. To address this issue, we recorded and analyzed electroencephalography (EEG) and quantitative magnetic resonance imaging (MRI) data during epileptogenesis in the in vivo mouse model of Medial Temporal Lobe Epilepsy (MTLE, kainate). Besides, this model of epilepsy is a particular form of drug-resistant epilepsy. The results indicate that high-field (4.7T) MRI parameters (T2-weighted; T2-quantitative) allow to detect the gradual neuro-anatomical changes that occur during epileptogenesis while electrophysiological parameters (number and duration of Hippocampal Paroxysmal Discharges) allow to assess the dysfunctional changes through the quantification of epileptiform activity. We found a strong correlation between EEG-based markers (invasive recording) and MRI-based parameters (non-invasive) periodically computed over the 'latent period' that spans over two weeks, on average. These results indicated that both structural and functional changes occur in the considered epilepsy model and are considered as biomarkers of the installation of epilepsy. Additionally, such structural and functional changes can also be observed in human temporal lobe epilepsy. Interestingly, MRI imaging parameters could be used to track early (day-7) structural changes (gliosis, cell loss) in the lesioned brain and to quantify the evolution of epileptogenesis after traumatic brain injury. © 2016 IEEE.
38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016
Unknown, Unknown or Invalid Region

hal-01467552
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467552
DOI : 10.1109/EMBC.2016.7591605