Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The emerging orbicular batfish (Platax orbicularis) aquaculture is the most important fish aquacultureindustry in French Polynesia. However, bacterial infections are causing severe mortality episodes.Therefore, there is an urgent need to find an effective management solution. Besides the supplyingdifficulty and high costs of veterinary drugs in French Polynesia, batfish aquaculture takes place close tothe coral reef, where use of synthetic persistent drugs should be restricted. Medicinal plants andbioactive algae are emerging as a cheaper and more sustainable alternative to chemical drugs. We havestudied the effect of local Polynesian plants and the local opportunistic algae Asparagopsis taxiformis onbatfish when orally administered. Weight gain and expression of two immune-related genes (lysozyme ge Lys G and transforming growth factor beta - TGF-b1) were studied to analyze immunostimulant activityof plants on P. orbicularis. Results showed that several plants increased Lys G and TGF-b1 expressionon orbicular batfish after 2 and 3 weeks of oral administration. A. taxiformis was the plant displaying themost promising results, promoting a weight gain of 24% after 3 weeks of oral administration andsignificantly increasing the relative amount of both Lys G and TGF-b1 transcripts in kidney and spleen ofP. orbicularis.
ISSN: 1050-4648

hal-01381334
https://hal-univ-perp.archives-ouvertes.fr/hal-01381334
DOI : 10.1016/j.fsi.2016.09.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Liver X Receptors (LXRs) α and β and the Peroxisome Proliferator-Activated Receptor α (PPARα) are transcription factors that belong to class II nuclear receptors. They drive the expression of genes involved in hepatic lipid homeostasis and therefore are important targets for the prevention and treatment of nonalcoholic fatty liver disease (NAFLD). LXRs and PPARα are regulated by endogenous ligands, oxysterols and fatty acid derived molecules, respectively. In the liver, pharmacological activation of LXRs leads to the over-expression of genes involved in de novo lipogenesis, while PPARα is critical for fatty acid catabolism in nutrient deprivation. Even if these two nuclear receptors seemed to play opposite parts, recent studies have highlighted that PPARα also influence the expression of genes involved in fatty acids synthesis. In this study, we used pharmacological approaches and genetically engineered mice to investigate the cross-talk between LXRs and PPARα in the regulation of genes responsible for lipogenesis. We first investigated the effect of T0901317 and fenofibrate, two synthetic agonists of LXRs and PPARα, respectively. As expected, T0901317 and fenofibrate induce expression of genes involved LXR-dependent and PPARα-dependent lipogenic responses. Considering such overlapping effect, we then tested whether LXR agonist may influence PPARα driven response and vice versa. We show that the lack of PPARα does not influence the effects of T0901317 on lipogenic genes expression. However, PPARα deficiency prevents the up-regulation of genes involved in ω-hydroxylation that are induced by the LXR agonist. In addition, over-expression of lipogenic genes in response to fenofibrate is decreased in LXR knockout mice as well as the expression of PPARα target genes involved in fatty acid oxidation. Altogether, our work provides in vivo evidence for a central interconnection between nuclear receptors that drive hepatic lipid metabolism in response to oxysterol and fatty acids.
ISSN: 0300-9084

inserm-00872582
http://www.hal.inserm.fr/inserm-00872582
DOI : 10.1016/j.biochi.2012.09.028
PUBMED : 23063693

Éditeur(s) : HAL CCSD
Résumé : International audience
High Pressure - Low Temperature (HP-LT) rocks testify for burying and exhumation of crustal material in subduction zones. The question of their exhumation is nevertheless still unclear. The Aegean domain offers several HP-LT belts. Especially, the Attic-Cycladic Blueschist unit (ACBU) is an example of a HP-LT unit exhumed in a convergent and then in a divergent context. It actually appears in metamorphic core complexes (MCCs) formed in the back-arc of the subduction. The syn-convergence "message" is however difficult to read because of the post-convergence structural and thermal overprint that accompanied the formation of the MCCs. Particularly, the geometry, the timing and the amount of the syn-orogenic exhumation remain unclear. We investigate theses questions with metamorphic petrology (Andros and Ios islands) and phengite population, single grain and in situ 40Ar-39Ar geochronology (Andros, Tinos, Syros and Ios islands). Based on these new constraints and a synthesis of published data, we are able to refine the geometry, the timing and the modes of the exhumation of the ACBU. Data from the whole Cyclades exhibit little differences in the age and P-T conditions at the successive stages of syn-orogenic exhumation. The peak of pressure (500±50 °C-18±1 kbar) has been reached at 50-55 Ma. The onset of the exhumation occurred at 40-45 Ma in blueschist facies conditions, between a basal thrust and a summital detachment. The following decompression was accompanied by cooling until 30-35 Ma (400±50 °C-8±1 kbar). At that time, the boundary conditions switched to extension. The change in boundary conditions is recorded by slowing of the exhumation and isobare heating. The conditions of post-orogenic exhumation differ from an island to another. The onset of post-orogenic exhumation is dated around 30 Ma in the northern Cyclades and 25 Ma in the southern Cyclades. It is related to top-to-the-North deformation in all the studied domain. The end of ductile deformation below the detachments is also diachronous (21 Ma in the North and 18 Ma in the South). Finally, we propose a model for the final steps of the exhumation related to the intrusion of granitic bodies around 14 Ma.
American Geophysical Union, Fall Meeting
San Francisco, United States

insu-00860510
https://hal-insu.archives-ouvertes.fr/insu-00860510
BIBCODE : 2010AGUFM.T23C2301L

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The purpose of this article is to improve modeling of solar irradiance through the analysis of measurement data on the ground in the intertropical zone. For this, we identify, using information criteria, the probabilistic distributions introduced in two models of synthetic solar irradiance generation. We then validate the results by using the KL divergence and KSI parameter as comparison criteria between distributions arising from real and synthesized data. Our study confirms, for example, that the Gaussian classical distribution is not suitable for modeling solar irradiance, and we propose other more suitable statistical laws instead. The value of the identification procedure of the distribution laws presented in this article is that it ensures the production of solar irradiance data comparable in their statistical content to the measured data. Another advantage is that this procedure contributes to highlighting the time invariance of distribution laws representing the random terms. We conclude that this new information-criteria-based method permits the identification of the probability laws that best describe the statistical distributions introduced in models of synthetic solar irradiance generation.
ISSN: 0038-092X

meteo-01304572
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304572
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304572/document
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304572/file/Manuscript_Hal.pdf
DOI : 10.1016/j.solener.2016.02.038

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
To improve earthquake location, we create a 3-D a priori P-wave velocity model (3-DVM) that approximates the large velocity variations of the Ecuadorian subduction system. The 3-DVM is constructed from the integration of geophysical and geological data that depend on the structural geometry and velocity properties of the crust and the upper mantle. In addition, specific station selection is carried out to compensate for the high station density on the Andean Chain. 3-D synthetic experiments are then designed to evaluate the network capacity to recover the event position using only P arrivals and the MAXI technique. Three synthetic earthquake location experiments are proposed: (1) noise-free and (2) noisy arrivals used in the 3-DVM, and (3) noise-free arrivals used in a 1-DVM. Synthetic results indicate that, under the best conditions (exact arrival data set and 3-DVM), the spatiotemporal configuration of the Ecuadorian network can accurately locate 70 per cent of events in the frontal part of the subduction zone (average azimuthal gap is 289° ± 44°). Noisy P arrivals (up to ± 0.3 s) can accurately located 50 per cent of earthquakes. Processing earthquake location within a 1-DVM almost never allows accurate hypocentre position for offshore earthquakes (15 per cent), which highlights the role of using a 3-DVM in subduction zone. For the application to real data, the seismicity distribution from the 3-D-MAXI catalogue is also compared to the determinations obtained in a 1-D-layered VM. In addition to good-quality location uncertainties, the clustering and the depth distribution confirm the 3-D-MAXI catalogue reliability. The pattern of the seismicity distribution (a 13 yr record during the inter-seismic period of the seismic cycle) is compared to the pattern of rupture zone and asperity of the Mw = 7.9 1942 and the Mw = 7.7 1958 events (the Mw = 8.8 1906 asperity patch is not defined). We observe that the nucleation of 1942, 1958 and 1906 events coincides with areas of positive Simple Bouguer anomalies and areas where marine terraces are still preserved on the coastal morphology. From north to south: (1) the 1958 rupture zone is almost aseismic and is attributed to a zone of high coupling; (2) south of the Galera alignment (perpendicular to the trench), the 1942 rupture zone presents moderate seismicity, deeper on the seismogenic interplate zone, and abutting on the Jama cluster (to the south). This cluster is facing the Cabo Pasado cap and positive Bouguer anomalies on the overriding margin. We suspect that this cluster reflects a zone of local asperity (partial coupling). South of the Jama cluster, the spherical aseismic zone in the Bahia area is interpreted as having a low seismic coupling (steady creep motion or slow slip events). We suspect that the site that generated the three M > 7 events (1896, 1956 and 1998) correspond to a small patch of strong coupling. To the south, in the Manta-Puerto Lopez zone, the seismicity is mainly organized in earthquake swarms (1998, 2002, 2005). Although slow slip events have been observed in the area (Vallée et al. submitted), we infer from the coastline shape, the marine terraces and the high positive Bouguer anomalies that the seismicity here might reveal a significant amount of seismic coupling.
ISSN: 0956-540X

hal-00873478
https://hal.archives-ouvertes.fr/hal-00873478
DOI : 10.1093/gji/ggs083

Éditeur(s) : HAL CCSD Seismological Society of America
Résumé : International audience
We present an improvement of the maximum intersection (MAXI) method in which absolute earthquake location is defined by the maximum intersection number of hyperbolic equal differential time (EDT) volumes (one EDT volume being described as all grid nodes satisfying the arrival‐time differences between two stations, ± a tolerance value known as TERR). This 3D technique is well adapted to a strongly heterogeneous environment, avoids the depth versus origin‐time trade‐off (even using P arrivals alone), and objectively filters possible erroneous arrival times. Improvements consist of introducing an iterative multiscale approach on the TERR parameter and conducting a hierarchy of grid discretization to refine the preliminary solution (multigrid algorithm). The outlier cleaning process is strengthened by conducting statistical analyses based on the number of EDT volume intersections per station, rather than on travel‐time residues. Processing two series of synthetic arrival times computed in the 3D seismological configuration of the southernmost Ryukyu subduction zone, offshore Taiwan, allows us to (1) confirm MAXI robustness, even when arrival times are highly disturbed or azimuthal coverage largely reduced, and (2) show that MAXI, by limiting trade‐offs between origin time and depth and between epicentral position and depth, is less affected by a wrong velocity model than a technique that minimizes travel‐time residues. To conclude, we apply the MAXI method to locate earthquakes recorded by the combined Central Weather Bureau of Taiwan (CWB) and the Japanese Meteorological Agency (JMA) networks (1991-2008) within a georealistic a priori 3D P‐velocity model. Hypocenter determinations are selected based on MAXI confidence factors, and earthquake clustering along well‐known tectonic features witnesses hypocenter determination accuracy.
ISSN: 0037-1106

hal-00725227
https://hal.archives-ouvertes.fr/hal-00725227
DOI : 10.1785/0120100311

Éditeur(s) : Neidine Editeurs
Résumé : The object of this article is to offer a synthesis of the knowledge clarifying the originality and the diversity of the submarine geological formations of the New Caledonian EEZ. A reminder is given onto the geologic history of the region, based upon the dislocation of the Gondwana Continent, the opening of the Tasman Sea, the presence of submarine volcanism, the setting up of heavy peridotitic rocks, the building up of the Fairway and Lord Howe Ridges and of sedimentary basins, the formation of volcanic domes and sea-mounts or guyots, the subduction along the Vanuatu Trench, the uplift of the Loyalty Islands, the development of carbonated ptatforms around the islands etc.... Of this complex history ensues an exceptional submarine geo-diversity. After this presentation the article clarifies the methods and the tools used in marine geosciences to map, explore, observe, analyze, sample, that they are embarked or are autonomous, teleoperated or inhabited systems. A chapter describes the programs which were set up since about forty years and the results obtained as well as the scientific teams concerned with. In conclusion, based on the unpublished character of this geo-diversity, the article introduces the second text to come in a next issue of theTai Kona magazine, text which will focus on the scientific, economic (mineral resources), environmental (deep biodiversity) and risks (seismicity) challenges that are worn by one of the most original submarine geologic context in the world.
L’objet de cet article est de proposer une synthèse des connaissances explicitant l’originalité et la diversité des formations géologiques sous-marines de la ZEE calédonienne. Un rappel est donné sur l’histoire géologique de la région basée sur la dislocation du continent Gondwana, l’ouverture de la Mer de Tasman, la présence de volcanisme sous-marin, la mise en place des péridotites, la formation des rides de Fairway et Lord Howe et de bassins sédimentaires, la formation de dômes et monts sous-marins ou guyots, la subduction le long de la fosse de Vanuatu, la surrection des Loyautés, la mise en place de plateformes carbonatées etc... De cette histoire complexe découle une géo-diversité sous-marine exceptionnelle. Après cette présentation l’article explicite les méthodes et les outils utilisés en géosciences marines pour cartographier, explorer, observer, analyser, prélever, qu’ils soient embarqués ou soient des systèmes autonomes, télé-opérés ou habités. Un chapitre décrit les programmes qui ont été mis en place depuis une quarantaine d’années et les résultats obtenus ainsi que les équipes scientifiques en place. En conclusion sur le constat du caractère inédit de cette géo-diversité, l’article introduit un deuxième texte à venir dans un prochain numéro de Tai Kona, texte qui se focalisera sur les enjeux scientifiques, économiques (ressources minérales), environnementaux (biodiversité profonde) et de risques (sismicité) portés par un contexte géologique sous-marin des plus originaux.
Tai Kona (2269-7535) (Neidine Editeurs), 2014 , N. 8 , P. 48-57

Droits : 2014 Tai Kona
http://archimer.ifremer.fr/doc/00194/30574/29098.pdf
http://archimer.ifremer.fr/doc/00194/30574/

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Functional traits are posited to explain interspecific differences in performance, but these relationships are difficult to describe for long-lived organisms such as trees, which exhibit strong ontogenetic changes in demographic rates. Here, we use a size-dependent model of tree growth to test the extent to which of 17 functional traits related to leaf and stem economics, adult stature and seed size predict the ontogenetic trajectory of tree growth.[br/] 2. We used a Bayesian modelling framework to parameterize and contrast three size-dependent diameter growth models using 16 years of census data from 5524 individuals of 50 rain forest tree species: a size-dependent model, a size-dependent model with species-specific parameters and a size-dependent model based on functional traits.[br/] 3. Most species showed clear hump-shaped ontogenetic growth trajectories and, across species, maximum growth rate varied nearly tenfold, from 0.58 to 5.51 mm year(-1). Most species attained their maximum growth at 60% of their maximum size, whereas the magnitude of ontogenetic changes in growth rate varied widely among species.[br/] 4. The Trait-Model provided the best compromise between explained variance and model parsimony and needed considerably fewer parameters than the model with species terms.[br/] 5. Stem economics and adult stature largely explained interspecific differences in growth strategy. Maximum absolute diameter growth rates increased with increasing adult stature and leaf delta(13)C and decreased with increasing wood density. Species with light wood had the greatest potential to modulate their growth, resulting in hump-shaped ontogenetic growth curves. Seed size and leaf economics, generally thought to be of paramount importance for plant performance, had no significant relationships with the growth parameters.[br/] 6. Synthesis. Our modelling approach offers a promising way to link demographic parameters to their functional determinants and hence to predict growth trajectories in species-rich communities with little parameter inflation, bridging the gap between functional ecology and population demography.
ISSN: 0022-0477

hal-01032387
https://hal.archives-ouvertes.fr/hal-01032387
DOI : 10.1111/j.1365-2745.2011.01883.x

Résumé : Synthesis of phytoplanktonic abundances from 2001 to 2006, based on the 6-year-plan recommended by the Water Framework Directive. Study of optimal monitoring frequencies, abundance indexes, and composition indexes.
Synthèse des abondances phytoplanctoniques de 2001 à 2006 selon le plan de 6 ans préconisé par la Directive Cadre de l'Eau. Etude des fréquences optimales de suivi, des indices d'abondance et des indices de composition.

Droits : 2007 Ifremer
http://archimer.ifremer.fr/doc/2007/rapport-3818.pdf
http://archimer.ifremer.fr/doc/00000/3818/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Concevoir le tourisme comme un outil de lutte contre la pauvreté nécessite en premier lieu de s’entendre sur le sens du mot pauvreté et de clarifier les intentions politiques d’un tel projet. La réflexion sur la réduction de la pauvreté grâce au tourisme peut être synthétisée en trois temps : tout d’abord, les effets bénéfiques du ruissellement des revenus touristiques dans les sociétés d’accueil, ensuite les dommages collatéraux qui résultent du tourisme et, finalement, définir les conditions nécessaires pour intégrer favorablement le projet touristique dans les territoires hôtes. Au final, il apparaît indispensable de développer une politique volontariste, car le fameux ruissellement de revenus ne va pas naturellement profiter aux plus démunis. Compte tenu des impacts complexes et contradictoires du tourisme international (notamment en matière d’inflation, de fuites des revenus, de déstructuration accélérée des sociétés locales), il faut l’inscrire dans un projet d’un territorial cohérent et soutenu par les communautés locales afin de dégager de réels bénéfices.
Develop tourism as a tool in the fight against poverty requires first to agree on the meaning of the word poverty and to clarify the political intentions of the project. Reflection on the reduction of poverty through the tourism can be synthesized in three steps: first, the beneficial effects of runoff from tourist revenues in host societies, then the collateral damage resulting from tourism and, finally, to define the conditions necessary to integrate positively tourism project in the host territories.In the end, it is indispensable to develop a proactive policy, because the poorest will not benefit from famous income runoff. Taking into account complex and contradictory impact of international tourism (including inflation, revenue leakage, deconstruction accelerated of local societies), it is necessary to include it in a sustained and coherent territorial project by local communities to identify real benefits.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6601
http://journals.openedition.org/etudescaribeennes/6601

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND: The aryl hydrocarbon receptor (AhR) has gradually emerged as a regulator of inflammation in the lung and other tissues. AhR may interact with the p65-subunit of the nuclear factor (NF)-κB transcription factors, but reported outcomes of AhR/NF-κB-interactions are conflicting. Some studies suggest that AhR possess pro-inflammatory activities while others suggest that AhR may be anti-inflammatory. The present study explored the impact of AhR and its binding partner AhR nuclear translocator (Arnt) on p65-activation and two differentially regulated chemokines, CXCL8 (IL-8) and CCL5 (RANTES), in human bronchial epithelial cells (BEAS-2B). RESULTS: Cells were exposed to CXCL8- and CCL5-inducing chemicals, 1-nitropyrene (1-NP) and 1-aminopyrene (1-AP) respectively, or the synthetic double-stranded RNA analogue, polyinosinic-polycytidylic acid (Poly I:C) which induced both chemokines. Only CXCL8, and not CCL5, appeared to be p65-dependent. Yet, constitutively active unligated AhR suppressed both CXCL8 and CCL5, as shown by siRNA knock-down and the AhR antagonist α-naphthoflavone. Moreover, AhR suppressed activation of p65 by TNF-α and Poly I:C as assessed by luciferase-assay and p65-phosphorylation at serine 536, without affecting basal p65-activity. In contrast, Arnt suppressed only CXCL8, but did not prevent the p65-activation directly. However, Arnt suppressed expression of the NF-κB-subunit RelB which is under transcriptional regulation by p65. Furthermore, AhR-ligands alone at high concentrations induced a moderate CXCL8-response, without affecting CCL5, but suppressed both CXCL8 and CCL5-responses by Poly I:C. CONCLUSION: AhR and Arnt may differentially and independently regulate chemokine-responses induced by both inhaled pollutants and pulmonary infections. Constitutively active, unligated AhR suppressed the activation of p65, while Arnt may possibly interfere with the action of activated p65. Moreover, ligand-activated AhR suppressed CXCL8 and CCL5 responses by other agents, but AhR ligands alone induced CXCL8 responses when given at sufficiently high concentrations, thus underscoring the duality of AhR in regulation of inflammation. We propose that AhR-signaling may be a weak activator of p65-signaling that suppresses p65-activity induced by strong activators of NF-κB, but that its anti-inflammatory properties also are due to interference with additional pathways.
Cell communication and signaling: CCS

hal-01063555
https://hal.archives-ouvertes.fr/hal-01063555
DOI : 10.1186/s12964-014-0048-8

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
The aim of this chapter is to provide a general overview of the main ecological aspects of Anthozoan-Symbiodinium mutualisms in the Mediterranean Sea. There are reports of at least twelve species of symbiotic anthozans in the basin. These anthozoans establish symbiotic relations with Symbiodinium Temperate A and B2 (Symbiodinium psygmophilum), corresponding to the only two species of Symbiodinium described in the region. A synthesis of the trophic and biochemical aspects of the interaction between Symbiodinum and their cnidarian hosts is given to contribute to the understanding of the mechanisms that maintain this special association. Finally, current knowledge about the ecological importance of this interaction in engineering species is examined. This review is framed to highlight the ecological importance of this symbiotic relationship in ecosystem construction and maintenance on an enclosed, temperate marine basin.
The Cnidaria, Past, Present and Future

ISBN : 978-3-319-31303-0
hal-01546929
http://hal.upmc.fr/hal-01546929
DOI : 10.1007/978-3-319-31305-4_24

Éditeur(s) : HAL CCSD
Résumé : French Guiana is a region located on the Guiana Shield in South America. Is presents at the same time a high originality in biodiversity, a good state of conservation and a strong correlation to Amazonian carbon stocks. Knowledge on evolution of the forest structure of French Guiana is however still insufficient to bring an optimal management at territory scale. Availability as never seen before of remote sensing data at high spatial resolution such as LiDAR, on large coverage, offers the opportunity to assess the forest resource in French Guiana. The work done during this thesis aim mostly to study the structure and the variations of the canopy height, the factors determining its variability and the consequences of forest logging activities. The data used during this thesis come from an airborne LiDAR and field data from Office National des Forêts (ONF). This thesis manuscript is divided in three parts. The first part introduces the problem and sets the objectives of the thesis. The second part takes the so-called "article" form, that is, the different chapters that compose it are scientific articles published or in the course of publication, it is composed of three studies (I) A study on the gaps detection and environmental determinants on the gap sizes distribution in natural forest: How to characterize the gap size distribution and are there environmental determinants that influence the statistical distribution of gap size? This article has been submitted in Biogeoscience. (ii) A study of the control of the environment on the canopy height structure and variations at different spatial resolutions. Which spatial scales are relevant for analyzing the environmental determinants of canopy height changes in tropical forests from remote sensing data? How can the environment help or not map the height of the canopy in the rainforest? This article was accepted for publication in Remote Sensing. (iii) a third study where we quantified the effects of Reduced Impact Logging (RIL) on the structure and variation of canopy height. What are the effects of logging on canopy height variations and gap size distribution? This article will be submitted for publication in a Forest Ecology and Management journal. In the last part, after a synthesis of the main results, we propose a conclusion.
La Guyane française est une région située sur le Plateau des Guyanes en Amérique du sud. Elle présente à la fois une grande originalité en termes de biodiversité, un bon état de conservation et une forte contribution au stock de carbone Amazonien. Les connaissances sur l’évolution de la structure forestière de la Guyane française restent cependant insuffisantes pour offrir une gestion optimale à l’échelle du territoire. La disponibilité sans précédent de données de télédétection à très haute résolution spatiale telles que le LiDAR , sur de larges couvertures nous offre l'opportunité d’évaluer la ressource forestière de la Guyane Française. Les travaux réalisés dans le cadre de cette thèse visent prioritairement à étudier la structure et les variations de la hauteur de canopée, les facteurs déterminant sa variabilité ainsi que les conséquences des activités d’exploitation forestière. Les données utilisées au cours de la thèse proviennent d’un LiDAR aéroporté et des données de terrains de l'Office National des Forêts (ONF). Ce manuscrit de thèse est divisé en trois grandes parties. La première partie introduit la problématique et fixe les objectifs de la thèse. La seconde partie prend la forme dite « sur article », c'est-à-dire que les différents chapitres qui la compose sont des articles scientifiques publiés ou en cours de publication, elle est composée de trois études. (i) Une étude concernant la détection des trouées et des déterminants environnementaux sur la distribution de tailles des trouées en forêt non exploitée : Comment caractériser la distribution de taille des trouées et est-ce qu’il y a des déterminants environnementaux qui influencent la distribution statistique de taille de trouées? Cet article à été soumis dans Biogeoscience. (ii) Une étude du contrôle de l'environnement sur la structure et les variations de la hauteur de canopée à différentes résolutions spatiales. Quelles échelles spatiales sont pertinentes pour analyser les déterminants environnementaux des variations de hauteur de la canopée en forêt tropicale à partir des données de télédétection ? Comment l’environnement peut aider, ou pas, à cartographier la hauteur de la canopée en forêt tropicale ? Cet article à été accepté pour publication dans Remote Sensing. (iii) Une troisième étude où nous avons quantifié les effets de l’exploitation à faible impact (EFI) sur la structure et la variation de la hauteur de canopée. Quelles sont les effets de l’exploitation forestière sur les variations de hauteur de canopée et sur la distribution de taille des trouées ? Cet article sera soumis pour publication dans une revue scientifique (Forest Ecology and Management). Dans la dernière partie, après une synthèse des principaux résultats, nous proposons des pistes de développement.
https://tel.archives-ouvertes.fr/tel-01527553

NNT : 2016YANE0006
tel-01527553
https://tel.archives-ouvertes.fr/tel-01527553
https://tel.archives-ouvertes.fr/tel-01527553/document
https://tel.archives-ouvertes.fr/tel-01527553/file/these-youven-goulamoussene2.pdf

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
ABSTRACT: In the past decade, there has been an increasing number of studies on co-infections between worms and malaria. However, this increased interest has yielded results that have been at times conflicting and made it difficult to clearly grasp the outcome of this interaction. Despite the heterogeneity of study designs, reviewing the growing body of research may be synthesized into some broad trends: Ascaris emerges mostly as protective for malaria and its severe manifestations, whereas hookworm seems to increase malaria incidence. As efforts are made to de-worm populations in malaria endemic areas, there is still no clear picture of the impact these programmes have in terms of quantitative and qualitative changes in malaria.
ISSN: 1475-2875

inserm-00632065
http://www.hal.inserm.fr/inserm-00632065
http://www.hal.inserm.fr/inserm-00632065/document
http://www.hal.inserm.fr/inserm-00632065/file/1475-2875-10-259.pdf
DOI : 10.1186/1475-2875-10-259

Éditeur(s) : Ecole nationale supérieure agronomique de Rennes
Résumé : Describe and gain understanding on fluctuations in animal population over time and space is a central goal of population ecology. This is also crucial to ensure the sustainable management of exploited resources, particularly those with complex population dynamics such as the bluefin tuna. The goal of this work is to collect bluefin tuna catches from the ancestral Mediterranean and Atlantic trap fisheries to (i) characterise long-term fluctuations in bluefin tuna population migrating in the Mediterranean, (ii) analyse their causes et (iii) assess their implications for fisheries management. The bluefin tuna main biological and ecological characteristics are first detailed. Then, the first part presents the trap fishery, and the process of collect and validation of the historical catches. This leads to develop a data base of 54 time-series more than 20 years long, the longest ones spanning about four centuries. Mean historical catches were around 15 000 tons/year ([7 000;25 000]). Time-series are analysed in a second part. Temporal variability of trap catches may be decomposed in three components: 100-year-long periodic fluctuations, 20-year cycles and inter-annual variations. These medium- to long-term fluctuations, representing more than 50% of the variability in the time-series, were synchronous all around the western Mediterranean and adjacent North Atlantic. In contrast, short-term variability was synchronous at a local scale only. It is argued that long-term fluctuations in trap catches could be considered as a proxy for those in abundance, and a synthetic time-series is computed to depict them. Biological and ecological processes that could cause such long-term fluctuations are discussed in a third part. We tested whether long-term fluctuations in Atlantic bluefin tuna might be related to large-scale environmental changes, using long time-series of the North Atlantic Oscillation (NAO), the Length of the Day index (LOD, a proxy of the atmospheric circulation index ACI) and the temperature. Spectral analyses of trap catches, LOD and temperature displayed similar spectra with peak at low frequency, whereas those of the NAO exhibited a broad band spectrum. Regression analyses and tests of correlation did not reveal any clear relationship between trap catches on the one hand and NAO and LOD on the other hand. In contrast, long-term fluctuations in trap catches appear to be negatively and significantly related to long-term trends in temperature. Underlying processes that could explain such a relationship are discussed, with special focus on changes in migration patterns. Finally, implications of such fluctuations in term of fisheries management are discussed in a fourth part. A simulation framework, in which a simulated population dynamics model is coupled with a VPA, is built to test the pertinence of the diagnostic of stock assessment according to different scenarios on fluctuations origins and population status. In the hypothesis of fluctuations linked to variations in the recruitment, VPA appears able to reconstruct the fluctuations but the predictions may be biased if natural fluctuations are not taking into account. In the hypothesis of fluctuations linked to changes in migration pattern, VPA is not able to reconstruct the population dynamics. In a precautionary approach, quotas which follow may be unsuitable in the best case, at worst dangerous if they are defined in comparison with a reference point. The concept of cible reference points, fixe and unique over time, appears not relevant for bluefin tuna; estimate trajectory reference pertinent may prove to be more pertinent.
Décrire et comprendre les fluctuations spatio-temporelles des espèces animales constituent les enjeux majeurs de l'écologie. La question est également cruciale pour réussir la gestion durable des ressources exploitées, en particulier celle du thon rouge, grand pélagique migrateur à la dynamique complexe. L'objectif de ce travail est de collecter les captures historiques de thon rouge par les madragues méditerranéennes et proche atlantiques pour (i) caractériser les fluctuations à long terme de la population migrante en Méditerranée, (ii) étudier leur déterminisme et (iii) évaluer leurs implications en terme de gestion des pêcheries. Après avoir décrit les principales caractéristiques biologiques et écologiques du thon rouge, la première partie présente la pêcherie à la madrague, puis le processus de collecte et de validation des données historiques de captures. Ce dernier conduit à la mise en place d'une base de données de 54 séries de plus de 20 ans, dont les plus longues s'étendent sur près de 4 siècles. Les productions historiques sont estimées à environ 15 000 tonnes/an ([7 000;25 000]). Les séries historiques de captures sont analysées dans la seconde partie. Leur variabilité temporelle peut être décomposée en trois composantes : de larges cycles pseudo-séculaires, des variations périodiques d'une vingtaine d'années et des fluctuations inter-annuelles. Les fluctuations à moyen et long terme, expliquant plus de la moitié de la variance des séries, sont synchrones à l'échelle du bassin méditerranéen occidental et du proche Atlantique. La variabilité inter-annuelle, en revanche, n'est synchrone qu'à une échelle locale. On montre finalement que les fluctuations à long terme des captures peuvent être considérées comme de bons indices des tendances des abondances de la population de thons rouges migrants en Méditerranée. Une série synthétique est construite pour les décrire. Les processus biologiques et écologiques susceptibles d'être à l'origine de ces fluctuations sont discutés dans la troisième partie. L'hypothèse d'un forçage environnemental à grande échelle est testée en utilisant des indices à long terme de l'Oscillation Nord Atlantique (NAO), de la longueur du jour (LOD, un indicateur de l'indice de circulation atmosphérique ACI) et de la température. Les analyses spectrales sur les séries de captures, du LOD et des températures révèlent des spectres similaires, avec un pic sur les basses fréquences, alors que celles sur le NAO conduisent à une large bande spectrale. Les régressions et les tests de corrélations ne montrent aucune relation significative entre les captures par les madragues et le NAO et le LOD. En revanche, les fluctuations à long terme des captures apparaissent significativement et négativement corrélées avec les fluctuations à long terme des températures. Les processus sous-jacents susceptibles d'expliquer une telle relation, en particulier des changements migratoires, sont discutés. Finalement, les implications des fluctuations pour la gestion de la pêcherie sont discutées dans une quatrième partie. Un cadre de simulation, couplant un modèle de dynamique de population à une VPA, est élaboré pour tester la pertinence des diagnostics d'évaluation de stock selon différents scénarios d'origine des fluctuations et d'état de la population. Dans l'hypothèse de fluctuations liées à des variations du recrutement, la VPA apparaît capable de reconstruire les fluctuations mais les prédictions sont biaisées lorsqu'il n'est pas tenu compte des fluctuations naturelles du stock. Dans l'hypothèse de fluctuations liées à des changements migratoires, la VPA est alors incapable de reproduire la dynamique de la population. Dans une approche de précaution, les quotas qui en découlent peuvent se révéler au mieux inappropriés, au pire dangereux s'ils sont définis par rapport à un point de référence. Ce concept de point cible, fixe et unique dans le temps, apparaît inapproprié pour le thon rouge ; estimer des "trajectoires de référence" serait sans doute plus pertinent.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2003/these-65.pdf
http://archimer.ifremer.fr/doc/00000/65/

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
The effect of trace concentrations of Ti on the rate and mechanism of hydrogen diffusion in pure forsterite was investigated experimentally. Forsterite doped with 350–400 ppm Ti (predominantly octahedral Ti3+, minor tetrahedral Ti4+) was prepared by diffusing Ti into pure synthetic forsterite at high temperature (1500 °C), very low oxygen fugacity (~QFM-5) at atmospheric pressure. The Ti-doped forsterite was then diffusively hydroxylated in a piston-cylinder apparatus at much lower temperatures (650–1000 °C) and higher oxygen fugacities, at 1.5–2.5 GPa, with chemical activities buffered by forsterite-enstatite or forsterite-periclase and partial pressure of H2O equal to total pressure. This produced hydrogen concentration-distance profiles of several hundred micrometers in length. Diffusion of hydrogen through the Ti-doped forsterite, even at very high Embedded Image , does not lead to redox re-equilibration of the high Ti3+/ΣTi ratio set during the synthesis of the starting material at extremely reducing conditions—the metastable point defects are partially preserved.Three main hydroxylated point defects are observed; hydroxyl is associated with Ti4+ (titano-clinohumite point defects), Ti3+ (and possibly other trivalent cations), and M-site vacancies. Concentration-distance profiles represent an interplay between diffusion and reaction (i.e., site rearrangement) to form the observed point defects. In all experiments, the concentration-distance profiles of the hydroxylated Ti defects coincide with the concentration-distance profiles of the M-site vacancy substitution, with the same crystallographic anisotropy. This suggests that the macroscopic movement of hydrogen through the crystal is due to one diffusion mechanism (the diffusion of hydroxylated M-site vacancies). The net H diffusion coefficient [logD(ΣH)], between 650–1000 °C, is Embedded Image where the values of logD0(ΣH) parallel to [100] and [001] directions are −3.0 ± 0.4 and −2.2 ± 0.4, respectively; diffusion is therefore around one order of magnitude faster along the c axis than along the a axis. The diffusion of hydrogen is slightly faster in Ti-doped forsterite than in pure forsterite. There is no effect of chemical activity or oxygen fugacity on the rate of diffusion. Hydrogen diffusion profiles represent a complex interplay between the movement of H through the crystal lattice and point-defect reactions to maintain charge balance.
ISSN: 0003-004X

hal-01467402
https://hal.archives-ouvertes.fr/hal-01467402
DOI : 10.2138/am-2016-55681571

Éditeur(s) : Neidine editeurs
Résumé : This article calls back first of all a set of facts relative to the main stakes considering sea and ocean so much on the economic point of view, in the scientific technological and innovative fields, in the governance aspects as also in the culture and international prestige ones. Then the article synthesizes several of the elements of the European study on the blue growth, the established priorities, the results of the study and its recommendations. The case of New Caledonia is then analyzed which shows that considering the 11 economic priorities identified by the European Union, 10 interest or may interest this ultra-marine country. A focus is proposed on a second European study which concerns the implementation of a Blue Society (Sea for Society Project) and in synthesis and perspectives the authors wonder about the possibilities and the profits which New Caledonia could take advantage of the implementation of a maritime and marine strategy based on the principles of blue growth and blue society.
Cet article rappelle tout d’abord un ensemble de faits relatifs aux grands enjeux de la maritimisation tant au plan de l’économie, de la science, de la technologie et de l’innovation, de la gouvernance comme également de la culture et du rayonnement international. Ensuite l’article synthétise plusieurs des éléments de l’étude européenne sur la croissance bleue, les priorités établies, les résultats de l’étude et ses recommandations. Le cas de la Nouvelle-Calédonie est alors abordé qui montre que sur les 11 priorités économiques identifiées par l’Europe, 10 intéressent ou sont susceptible d’intéresser ce pays ultra-marin. Un focus est proposé sur une seconde étude européenne qui concerne la mise en place d’une Société Bleue et en synthèse et perspectives les auteurs s’interrogent sur les possibilités et bénéfices que la Nouvelle-Calédonie pourrait tirer de la mise en place d’une stratégie maritime et marine basée sur les principes de croissance et de société bleues.
Tai Kona (2269-7535) (Neidine editeurs), 2013-11 , N. 5 , P. 12-35

Droits : Tai Kona
http://archimer.ifremer.fr/doc/00174/28505/26854.pdf
http://archimer.ifremer.fr/doc/00174/28505/

Éditeur(s) : IEEE
Résumé : Soil Moisture and Ocean Salinity, European Space Agency, is the first satellite mission addressing the challenge of measuring sea surface salinity from space. It uses an L-band microwave interferometric radiometer with aperture synthesis (MIRAS) that generates brightness temperature images, from which both geophysical variables are computed. The retrieval of salinity requires very demanding performances of the instrument in terms of calibration and stability. This paper highlights the importance of ocean salinity for the Earth's water cycle and climate; provides a detailed description of the MIRAS instrument, its principles of operation, calibration, and image-reconstruction techniques; and presents the algorithmic approach implemented for the retrieval of salinity from MIRAS observations, as well as the expected accuracy of the obtained results.
Proceedings of the IEEE (0018-9219) (IEEE), 2010-05 , Vol. 98 , N. 5 , P. 649-665

Droits : 2010 IEEE – All Rights Reserved
http://archimer.ifremer.fr/doc/00004/11482/8066.pdf
DOI:10.1109/JPROC.2009.2033096
http://archimer.ifremer.fr/doc/00004/11482/

Éditeur(s) : HAL CCSD
Résumé : International audience
In this paper, we introduce a framework for on-line learning of handwritten symbols from scratch. As such, learning suffers from missing data at the beginning of the learning process, in this paper we propose the use of Sigma-lognormal model to generate synthetic data. Our framework deals with a real-time use of the system, where the recognition of a single symbol cannot be postponed by the generation of synthetic data. We evaluate the use of our framework and Sigma-lognormal model by comparison of the recognition rate to a block-learning and learning without any synthetic data. Experimental results show that both of these contributions represent an enhancement to the on-line handwriting recognition, especially when starting from scratch.
17th Biennial Conference of the International Graphonomics Society
Pointe-à-Pitre, Guadeloupe

hal-01165923
https://hal.univ-antilles.fr/hal-01165923
https://hal.univ-antilles.fr/hal-01165923/document
https://hal.univ-antilles.fr/hal-01165923/file/IGS_2015_submission_34.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Zebrafish, Danio rerio, is increasingly used as an animal model to study the effects of pharmaceuticals and environmental estrogens. As most of these estrogens have only been tested on human estrogen receptors (ERs), it is necessary to measure their effects on zebrafish ERs. In humans there are two distinct nuclear ERs (hERα and hERβ), whereas the zebrafish genome encodes three ERs, zfERα and two zfERβs (zfERβ1 and zfERβ2). In this study, we established HeLa-based reporter cell lines stably expressing each of the three zfERs. We first reported that estrogens more efficiently activate the zfERs at 28°C as compared to 37°C, thus reflecting the physiological temperature of zebrafish in wildlife. We then showed significant differences in the ability of agonist and antagonist estrogens to modulate activation of the three zfER isotypes in comparison to hERs. Environmental compounds (bisphenol A, alkylphenols, mycoestrogens) which are hER panagonists and hERβ selective agonists displayed greater potency for zfERα as compared to zfERβs. Among hERα selective synthetic agonists, PPT did not activate zfERα while 16α-LE2 was the most zfERα selective compound. Altogether, these results confirm that all hER ligands control in a similar manner the transcriptional activity of zfERs although significant differences in selectivity were observed among subtypes. The zfER subtype selective ligands that we identified thus represent new valuable tools to dissect the physiological roles of the different zfERs. Finally, our work also points out that care has to be taken in transposing the results obtained using the zebrafish as a model for human physiopathology.
Toxicology and Applied Pharmacology

hal-01063914
https://hal.archives-ouvertes.fr/hal-01063914
DOI : 10.1016/j.taap.2014.07.020