Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We use 36Cl surface exposure dating to determine the slip release pattern over the last ~ 15 kyr for the Velino-Magnola fault, a major active normal fault in Central Italy. We sampled the fault at five well-separated sites along its length, and modeled the 36Cl concentrations measured in the 376 samples. We find that the fault broke in at least 9 large earthquakes that occurred in two 5-6 ka-long supercycles. Each cycle included a 4-5 ka-long phase of relative quiescence, followed by a cluster of at least 3 large earthquakes or earthquake sequences that released most of the accumulated strain in ~ 1 ka. All 9 identified events broke the entire fault and produced maximum surface slips of 2-3 m. Though the Velino-Magnola fault seems presently in a stage of relative quiescence, it may re-enter a phase of paroxysmal seismic activity in a few hundred of years
ISSN: 0012-821X

hal-00667280
https://hal.archives-ouvertes.fr/hal-00667280
DOI : 10.1016/j.epsl.2011.05.022

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Background : Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.Results : Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.Conclusions : We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time.
ISSN: 0960-9822

hal-01149637
http://hal.upmc.fr/hal-01149637
http://hal.upmc.fr/hal-01149637/document
http://hal.upmc.fr/hal-01149637/file/Logares_et_al_CurrentBiol_accepted.pdf
DOI : 10.1016/j.cub.2014.02.050

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Sensitive instruments like strainmeters and tiltmeters are necessary for measuring slowly varying low amplitude Earth deformations. Nonetheless, laser and fibre interferometers are particularly suitable for interrogating such instruments due to their extreme precision and accuracy. In this paper, a practical design of a simple pendulum borehole tiltmeter based on laser fibre interferometric displacement sensors is presented. A prototype instrument has been constructed using welded borosilicate with a pendulum length of 0.85 m resulting in a main resonance frequency of 0.6 Hz. By implementing three coplanar extrinsic fibre Fabry-Perot in-terferometric probes and appropriate signal filtering, our instrument provides tilt measurements that are insensitive to parasitic deformations caused by temperature and pressure variations. This prototype has been installed in an underground facility (Rustrel, France) where results show accurate measurements of Earth strains derived from Earth and ocean tides, local hydro-logic effects, as well as local and remote earthquakes. The large dynamic range and the high sensitivity of this tiltmeter render it an invaluable tool for numerous geophysical applications such as transient fault motion, volcanic strain and reservoir monitoring.
ISSN: 0956-540X

hal-01265967
https://hal.archives-ouvertes.fr/hal-01265967
https://hal.archives-ouvertes.fr/hal-01265967/document
https://hal.archives-ouvertes.fr/hal-01265967/file/HCS1.pdf
DOI : 10.1093/gji/ggv358

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Based on their small size and genomic properties, ultrasmall prokaryotic groups like the Candidate Phyla Radiation have been proposed as possible symbionts dependent on other bacteria or archaea. In this study, we use a bipartite graph analysis to examine patterns of sequence similarity between draft and complete genomes from ultrasmall bacteria and other complete prokaryotic genomes, assessing whether the former group might engage in significant gene transfer (or even endosymbioses) with other community members. Our results provide preliminary evidence for many lateral gene transfers with other prokaryotes, including members of the archaea, and report the presence of divergent, membrane-associated proteins among these ultrasmall taxa. In particular, these divergent genes were found in TM6 relatives of the intracellular parasite Babela massiliensis.
ISSN: 1462-2912

Droits : http://creativecommons.org/licenses/by/
hal-01480348
http://hal.upmc.fr/hal-01480348
http://hal.upmc.fr/hal-01480348/document
http://hal.upmc.fr/hal-01480348/file/emi13477.pdf
DOI : 10.1111/1462-2920.13477

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The strike-slip faults of north Tibet accommodate part of the Cenozoic convergence between India and Asia. Along the Karakax valley south of Yecheng and near the Xidatan trough south of Golmud, the active traces of the Altyn-Tagh and Kunlun faults follow narrow belts of metamorphic rocks. The deformation recorded in those mylonites is sinistral strike-slip. Rb/Sr and 40Ar/39Ar ages of deformation from syntectonic fabrics formed at 350–400°C 120 Ma. Argon loss suggests that deformation was associated to a 250–300°C thermal pulse that lasted 5–20 Ma after the onset of movement. Unroofing occurred much later, around 25 Ma when sudden cooling suggests a component of thrusting or more likely normal faulting. The Cretaceous shear may be related to collision between the Qiantang and the Lhasa blocks. The Karakax and Xidatan shear zones may have formed a unique, continuous boundary in the Cretaceous, which was later reused by the Tertiary strike-slip faults, leading to potentially calculable offsets along the Altyn-Tagh fault.
ISSN: 2169-9313

hal-00197562
https://hal.archives-ouvertes.fr/hal-00197562
https://hal.archives-ouvertes.fr/hal-00197562/document
https://hal.archives-ouvertes.fr/hal-00197562/file/Arnaud_JGR000904_def.pdf
DOI : 10.1029/2001JB000904

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The chronostratigraphy of the lower Miocene deposits of northwestern Sardinia is refined in the Castelsardo Basin. The combination of new 40Ar/39Ar isotopic datings, 19 micropalaeontological datings (calcareous nannofossils, planktonic and large benthic foraminifers) and 16 palaeomagnetic polarity measurements led to a new chronostratigraphic framework. The continental deposits of the first megasequence (Valledoria and Casteldoria members) are possibly Aquitanian. The overlying marine sediments are early Burdigalian (Vaginella depressa Molasse). The marine transgression can be dated to around 19.7 Ma. Marine conditions ceased 18.83 ± 0.13 Ma, the age of the index aerial τ2 ignimbrite. The continental part of the second megasequence (“Lacustre” unit) is early–middle Burdigalian, between 18.8 and 18 Ma. The overlying marine part (Campulandu and Sedini members) is middle–late Burdigalian. The second marine transgression began in the earliest–late Burdigalian, during the Chron C5Dr reversal, at the time of the eustatic Bur 4 event. The Castelsardo basin went through two main extensional tectonic episodes. The first one occurred as the Valledoria Member was deposited and possibly dates back to the Aquitanian. The second one occurred as the uppermost part of the Vaginella depressa Molasse was deposited during the early Burdigalian. The second extensional episode is related to a rapid rotation of Sardinia. Palaeomagnetic results confirm that Corsica and Sardinia acted as a single block which suffered a 28 ± 17° ccw rotation after 19.2 Ma. The Castelsardo basin is held to be an Aquitanian–early Burdigalian intra-arc rift basin that later evolved in a thermally controlled subsident margin of the Ligurian-Provençal Basin during the middle–late Burdigalian.
ISSN: 0031-0182

hal-00498288
https://hal.archives-ouvertes.fr/hal-00498288
DOI : 10.1016/j.palaeo.2010.06.007

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Malaria remains one of the most common vector-borne diseases in the world and the definition of novel control strategies can benefit from the modeling of transmission processes. However, data-driven models are often difficult to build, as data are very often incomplete, heterogeneous in nature and in quality, and/or biased. In this context, a knowledge-based approach is proposed to build a robust and general landscape-based hazard index for malaria transmission that is tailored to the Amazonian region. A partial knowledge-based model of the risk of malaria transmission in the Amazonian region, based on landscape features and extracted from a systematic literature review, was used. Spatialization of the model was obtained by generating land use and land cover maps of the cross-border area between French Guiana and Brazil, followed by computing and combining landscape metrics to build a set of normalized landscape-based hazard indices. An empirical selection of the best index was performed by comparing the indices in terms of adequacy with the knowledge-based model, intelligibility and correlation with P. falciparum incidence rates. The selected index is easy to interpret and successfully represents the current knowledge about the role played by landscape patterns in malaria transmission within the study area. It was significantly associated with P. falciparum incidence rates, using the Pearson and Spearman correlation coefficients (up to 0.79 and 0.75, respectively; p-value < 0.001), and the linear regression coefficient of determination (reaching 0.63; p-values < 0.001). This study establishes a spatial knowledge-driven, landscape-based hazard malaria index using remote sensing that can be easily produced on a regular basis and might be useful for malaria prediction, surveillance, and control. Keywords: remote sensing; land use and land cover; landscape metric; knowledge-based hazard modeling; malaria; cross-border area between French Guiana and Brazil
ISSN: 2072-4292

hal-01355255
https://hal.archives-ouvertes.fr/hal-01355255
https://hal.archives-ouvertes.fr/hal-01355255/document
https://hal.archives-ouvertes.fr/hal-01355255/file/010066865.pdf
IRD : fdi:010066865

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Local variation in the density of Anopheles mosquitoes and the risk of exposure to bites are essential to explain the spatial and temporal heterogeneities in the transmission of malaria. Vector distribution is driven by environmental factors. Based on variables derived from satellite imagery and meteorological observations, this study aimed to dynamically model and map the densities of Anopheles darlingi in the municipality of Saint-Georges de l’Oyapock (French Guiana). Longitudinal sampling sessions of An. darlingi densities were conducted between September 2012 and October 2014. Landscape and meteorological data were collected and processed to extract a panel of variables that were potentially related to An. darlingi ecology. Based on these data, a robust methodology was formed to estimate a statistical predictive model of the spatial-temporal variations in the densities of An. darlingi in Saint-Georges de l’Oyapock. The final cross-validated model integrated two landscape variables—dense forest surface and built surface—together with four meteorological variables related to rainfall, evapotranspiration, and the minimal and maximal temperatures. Extrapolation of the model allowed the generation of predictive weekly maps of An. darlingi densities at a resolution of 10-m. Our results supported the use of satellite imagery and meteorological data to predict malaria vector densities. Such fine-scale modeling approach might be a useful tool for health authorities to plan control strategies and social communication in a cost-effective, targeted, and timely manner.
ISSN: 1932-6203

hal-01383486
https://hal.archives-ouvertes.fr/hal-01383486
https://hal.archives-ouvertes.fr/hal-01383486/document
https://hal.archives-ouvertes.fr/hal-01383486/file/Adde_et_al_PlosONE_2016.pdf
DOI : 10.1371/journal.pone.0164685

Éditeur(s) : HAL CCSD
Résumé : In this paper we introduce k-laminar graphs a new class of graphs which extends the idea of Asteroidal triple free graphs. Indeed a graph is k-laminar if it admits a diametral path that is k-dominating. This bio-inspired class of graphs was motivated by a biological application dealing with sequence similarity networks of reads (called hereafter read networks for short). We briefly develop the context of the biological application in which this graph class appeared and then we consider the relationships of this new graph class among known graph classes and then we study its recognition problem. For the recognition of k-laminar graphs, we develop polynomial algorithms when k is fixed. For k=1, our algorithm improves a Deogun and Krastch's algorithm (1999). We finish by an NP-completeness result when k is unbounded.
https://hal.inria.fr/hal-01282715

hal-01282715
https://hal.inria.fr/hal-01282715
ARXIV : 1603.01179

Éditeur(s) : HAL CCSD
Résumé : Evolution of organisms, genomes and genes does not strictly follow a tree-like process; symbiosis, horizontal gene transfers and gene fusions build high level composite objects with components of phylogenetically distinct origins. Such processes have been called introgressive events and are significant in evolution. They are involved in some major evolutionary transitions such as eukaryogenesis, photosynthesis acquisition in eukaryotes and the origins of major archaeal clades. Eukaryogenesis would have involved (at least) two kinds of partners: an archaeon and an alpha-proteobacterium. Photosynthetic eukaryotes arose from the integration of a cyanobacterium into a eukaryotic cell and recent findings suggested that most archaeal lineages emerged after massive acquisitions of bacterial genes. These composite lineages carry highly chimeric genomes where genes from symbiotic partners co-localize into the same genome. During my PhD thesis, I used sequence similarity networks and phylogenetic methods in order to study reticulate evolution. My research specifically focused on a previously hidden component of composite genomes: symbiogenetic genes (S genes). These chimeric genes are found in genetic mergers, and originate from the association of genes of symbiotic partners. Some association rules have been discovered. In a broad perspective, the discovery of S-genes extends the concept of genome chimerism to the within-gene level.
L'évolution des organismes, des génomes et des gènes n'est pas strictement arborescente; les symbioses, les transferts horizontaux de gènes ou encore la fusion de gènes créent des objets composites formés de parties dont les histoires évolutives sont différentes. Ces processus non arborescents sont appelés introgressifs et ont un impact non négligeable en évolution. Ils sont à l'origine de transitions évolutives majeures comme l'émergence des eucaryotes, des eucaryotes photosynthétiques ou encore de nombreux groupes d'Archaea. Dans le cas des eucaryotes, l'association et la stabilisation d'une Archaea et d'une alpha-protéobactérie a permis l'émergence d'un nouveau groupe d'organismes composites aux propriétés émergentes. L'acquisition de la photosynthèse chez les eucaryotes s'est faite via l'endosymbiose d'une cyanobactérie et, bien que débattue, l'apparition des grands groupes d'Archaea semble être concomitante avec l'acquisition de nombreux gènes d'origine bactérienne. Ces superorganismes ont la particularité d'avoir des génomes composés de gènes de différents partenaires symbiotiques. L'objectif de mon travail de thèse a constitué à étudier l'aspect introgressif de l'évolution par des méthodes de réseaux de similarité de séquence et des méthodes phylogénétiques. Je me suis particulièrement focalisé sur la détection de nouveaux gènes chimériques nommés gènes symbiogénétiques (S-gènes) car composés de parties originaires des différents partenaires symbiotiques. De tels gènes existent dans les génomes et plusieurs règles d'association ont pu être mises en évidence. Plus généralement, la présence de S-gènes étend la notion de mosaïcisme génomique au niveau infra-génique.
https://tel.archives-ouvertes.fr/tel-01536344

NNT : 2016PA066534
tel-01536344
https://tel.archives-ouvertes.fr/tel-01536344
https://tel.archives-ouvertes.fr/tel-01536344/document
https://tel.archives-ouvertes.fr/tel-01536344/file/2016PA066534.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
The development of the mine, gas and oil extraction in the Eastern Venezuela (Oriente and Guayana regions) and the Far Eastern (Oriental Siberia) is characterized by the emergence of pioneer small and medium cities during the last fifty years and an emerging process of metropolisation since 2000 (Yakutsk, Ciudad Guayana). In Eastern Venezuela, the urbanization is partially planned, generally “spontaneous”. In Yakutia, dynamics of urbanization is planned. In the both cases, urban dynamics is driven by the exploitation of the natural resources and the immigration. With the collapse of the Soviet Union, some mining towns disappeared in the 1990 and 2000. Since the beginning of the 2010’s mining urban regions are under a double process of territorial integration with Russian Europe and Asia. In Venezuela, small and medium sized cities are growing with the emergence of new mining territories and the exploitation of the Orinoco Belt (extra heavy oil). This article analyses the main territorial dynamics of these small and medium sized cities.
Digital Cities and Spatial Justice

ISBN : 978-84-697-4984-5
hal-01584550
https://hal-amu.archives-ouvertes.fr/hal-01584550

Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Although heterokaryons have been reported in nature, multicellular organisms are generally assumed genetically homogeneous. Here, we investigate the case of arbuscular mycorrhizal fungi (AMF) that form symbiosis with plant roots. The growth advantages they confer to their hosts are of great potential benefit to sustainable agricultural practices. However, measuring genetic diversity for these coenocytes is a major challenge: Within the same cytoplasm, AMF contain thousands of nuclei and show extremely high levels of genetic variation for some loci. The extent and physical location of polymorphism within and between AMF genomes is unclear. We used two complementary strategies to estimate genetic diversity in AMF, investigating polymorphism both on a genome scale and in putative single copy loci. First, we used data from whole-genome pyrosequencing of four AMF isolates to describe genetic diversity, based on a conservative network-based clustering approach. AMF isolates showed marked differences in genome-wide diversity patterns in comparison to a panel of control fungal genomes. This clustering approach further allowed us to provide conservative estimates of Rhizophagus spp. genomes sizes. Second, we designed new putative single copy genomic markers, which we investigated by massive parallel amplicon sequencing for two Rhizophagus irregularis and one Rhizophagus sp. isolates. Most loci showed high polymorphism, with up to 103 alleles per marker. This polymorphism could be distributed within or between nuclei. However, we argue that the Rhizophagus isolates under study might be heterokaryotic, at least for the putative single copy markers we studied. Considering that genetic information is the main resource for identification of AMF, we suggest that special attention is warranted for the study of these ecologically important organisms.
ISSN: 1759-6653

Droits : http://creativecommons.org/licenses/by/
hal-01224215
http://hal.upmc.fr/hal-01224215
http://hal.upmc.fr/hal-01224215/document
http://hal.upmc.fr/hal-01224215/file/Genome%20Biol%20Evol-2015-Boon-505-21.pdf
DOI : 10.1093/gbe/evv002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Multiproxy analyses were performed on core MS27PT recovered in hemipelagic sediments deposited on the Nile margin in order to reconstruct Nile River palaeohydrological fluctuations during the last 100,000 years. The strontium and neodymium isotope composition of the terrigenous fraction and the major element distribution reveal large and abrupt changes in source, oscillating between a dominant aeolian Saharan contribution during arid periods and a dominant Nile River contribution during pluvial periods. Iron content shows a strong correlation with strontium and neodymium isotopes. This allows the use of a high-resolution continuous Fe record as a proxy of Blue Nile sediment input over the last 100,000 years. The detailed Fe record, with approximately 10 years resolution during pluvial periods, is consistent with subtropical African records of well-dated lake level fluctuations and thus constitutes a first continuous high resolution record of the East African monsoon regime intensity over Ethiopia.;The detailed Fe record shows the two main known pluvial periods attributed to strengthening of the African monsoon over Ethiopia, the Nabtian period from 14 to 8 ka cal BP and the Saharan period from 98 to 72 ka BR For the first time, the last glacial period (Marine Isotope Stage (MIS) 2,3 and 4) is documented with a continuous record showing large oscillations between high and low East African palaeo-monsoon regimes.;The end of the Nabtian period occurred at 8 ka in core MS27PT, i.e. much earlier than on the East Equatorial African region where it ended around 5.5 ka. We interpret this as evidence that the southward shift of the rain belt occurred 3000 years earlier over the Eastern Ethiopian Highland and propose that the gradual southward migration of the rain belt was associated with highly variable intensity and longer rainy seasons from 8 to 5 ka. During the last glacial period, two wet periods are present around 60-50 ka BP and 38-30 ka BP. These two humid periods are in phase with the rise of atmospheric CH4 concentrations suggesting that wetland tropical African area was one of the sources of the atmospheric CH4 during the MIS 3. During the Last Glacial Maximum and MIS 4, high Saharan aeolian influxes in phase with records of aeolian dust deposited in East Antarctica are documented. This study highlights the importance of reconstructions of monsoon rainfall fluctuation at high temporal resolution to better understand the link between low- and high-latitude climate variability at millennial timescales.
ISSN: 0277-3791

hal-00496481
https://hal.archives-ouvertes.fr/hal-00496481
DOI : 10.1016/j.quascirev.2010.02.006

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
We provide new constraints on the modes of mantle exhumation and denudation in the pre-orogenic Pyrenees by investigating the poorly known peridotites located east of the Lherz body, in eastern Ariè ge (Vicdessos, Urs, Bestiac, Caussou and Prades main peridotitic bodies). We show that: (1) numerous peridotite bodies, not described so far, are constituted by decametric to sub-metric outcrops scattered between and around the main outcrops identified by Monchoux (1970); (2) most of the peridotites form blocks and lenses of various sizes, from millimetric monocrystalline grains to hectometric olistoliths, embedded in debris flows involving mainly Mesozoic metasediments; these peridotites can therefore be linked to the S-type peridotites of Lagabrielle et al. (2010), and share similarities with the peridotites of Lherz region (Clerc et al., 2012). All originated from tectono-sedimentary processes associated with mantle exhumation in relation with extreme thinning and breakoff of the continental basement; (3) the various petrographic characters of these peridotites and their heterogeneity in serpentinisation degree imply a peculiar mode of exhumation, which merges mantle fragments inherited from different structural levels; (4) the lack of tectonic structures such as faults and shear planes associated with the ultramafic-rich breccia formation and the presence of neoformation of metamorphic minerals within the matrix preclude their origin as cataclasites related to the Latest Cretaceous and Tertiary Pyrenean contractional deformation. The peridotites of eastern Ariè ge are indisputable witnesses of the presence of an inverted hyper-extended Cretaceous passive margin forming the current North Pyrenean zone. The geometry of the extensional system was complex and probably associated with strike-slip faults and transcurrent motion. ß 2016 The Authors. Published by Elsevier Masson SAS on behalf of Acadé mie des sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).
ISSN: 1631-0713

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502/document
https://hal-insu.archives-ouvertes.fr/insu-01280502/file/1-s2.0-S1631071316000043-main.pdf
DOI : 10.1016/j.crte.2015.12.003

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Natural disturbances are the dominant form of forest regeneration and dynamics in unmanaged tropical forests. Monitoring the size distribution of treefall gaps is important to better understand and predict the carbon budget in response to land use and other global changes. In this study, we model the size frequency distribution of natural canopy gaps with a discrete power law distribution. We use a Bayesian framework to introduce and test, using Monte Carlo Markov chain and Kuo–Mallick algorithms, the effect of local physical environment on gap size distribution. We apply our methodological framework to an original light detecting and ranging dataset in which natural forest gaps were delineated over 30 000 ha of unmanaged forest. We highlight strong links between gap size distribution and environment, primarily hydrological conditions and topography, with large gaps being more frequent on floodplains and in wind-exposed areas. In the future, we plan to apply our methodological framework on a larger scale using satellite data. Additionally , although gap size distribution variation is clearly under environmental control, variation in gap size distribution in time should be tested against climate variability.
ISSN: 1726-4170

hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/document
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/file/bg-14-353-2017.pdf
DOI : 10.5194/bg-14-353-2017

Éditeur(s) : HAL CCSD IRD
Résumé : International audience
The number of satellites and remote sensing sensors devoted to earth observation becomes increasingly high, providing more and more data and especially images. In the same time the access to such a data and to the tools to process them has been considerably improved. In the presence of such data flow - and regarding the necessity to follow up and predict environmental and societal changes in highly dynamic socio-environmental contexts - we need automatic image interpretation methods. This could be accomplished by exploring some strengths of artificial intelligence. Our main idea consists in inducing classification rules that explicitly take into account structural knowledge, using Aleph, an Inductive Logic Programming (ILP) system. We applied our proposed methodology to three land cover/use maps of the French Guiana littoral. One hundred and forty six classification rules were induced for the 39 land-cover classes of the maps. These rules are expressed in first order logic language which make them intelligible and interpretable by non-experts. A ten-fold cross validation gave average values for classification accuracy, specificity and sensibility equal to, respectively, 98.82 %, 99.65% and 70%. The proposed methodology could be valuably exploited to automatically classify new objects and/or help operators using object-based classification procedures.
Symposium of the Latin American Society for Remote Sensing and Spatial Information Systems (SELPER)
Cayenne, French Guiana

ird-00797337
http://hal.ird.fr/ird-00797337
http://hal.ird.fr/ird-00797337/document
http://hal.ird.fr/ird-00797337/file/Bayoudh_et_al_2012_FP_SELPER-086.pdf
IRD : fdi:010058343

Éditeur(s) : HAL CCSD
Résumé : International audience
To assess prognostic factors for survival and describe Model for End-Stage liver disease (MELD) dynamics in human immunodeficiency virus+/hepatitis C virus+ (HIV+/HCV+) patients after an initial episode of hepatic decompensation.An HIV+/HCV+ cohort of patients experiencing an initial decompensation episode within the year preceding enrollment were followed prospectively. Clinical and biological data were collected every 3 months. Predictors for survival were identified using Kaplan-Meier curves and Cox models. A 2-slope-mixed linear model was used to estimate MELD score changes as a function of survival.Sixty seven patients were included in 32 centers between 2009 and 2012 (72% male; median age: 48 years [interquartile ratio (IQR):45-52], median follow-up: 22.4 months [range: 0.5-65.3]). Overall survival rates were 86%, 78%, and 59% at 6, 12, and 24 months, respectively. Under multivariate analysis, the MELD score at initial decompensation was predictive of survival, adjusted for age, type of decompensation, baseline CD4 counts, and further decompensation during follow-up as a time-dependent variable. The adjusted hazard ratio of death was 1.32 for a score 3 points higher (95% CI: [1.06-1.63], P = 0.012). MELD score kinetics within the 6 months after initial decompensation differed significantly between non-deceased and deceased patients, with a decreased (-0.49/month; P = 0.016), versus a flat (+0.06/month, P = 0.753) mean change in score.MELD is an effective tool to predict survival in HIV+/HCV+ patients with decompensated cirrhosis. A non-decreasing MELD score within 6 months following this initial decompensation episode may benefit from privileged access to liver transplantation in this poor prognosis population
Medicine

hal-01205351
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01205351
DOI : 10.1097/MD.0000000000001239
PUBMED : 26222860

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A dense, local network of 30 geodetic markers covering a 50 × 60 km2 area in the southwestern European Alps (Briançon region) has been temporarily surveyed in 1996, 2006 and 2011 by GPS. The aim is to measure the current deformation in this seismically active area. The study zone is characterized by a majority of extensional and dextral focal mechanisms, along north–south to N160 oriented faults. The combined analysis of the three measurement campaigns over 15 years and up to 16 years of permanent GPS data from the French RENAG network now enables to assess horizontal velocities below 1 mm/year within the local network. The long observation interval and the redundancy of the dense campaign network measurement help to constrain a significant local deformation pattern in the Briançon region, yielding an average E–W extension of 16 ± 11 nanostrain/year. We compare the geodetic deformation field to the seismic deformation rate cumulated over 37 years, and obtain good coherencies both in amplitude and direction. Moreover, the horizontal deformation localized in the Briançon region represents a major part of the Adriatic-European relative plate motion. However, the average uplift of the network in an extensional setting needs the presence of buoyancy forces in addition to plate tectonics.
ISSN: 0264-3707

hal-01119724
https://hal.archives-ouvertes.fr/hal-01119724
DOI : 10.1016/j.jog.2015.02.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recent sedimentary facies and processes along the offshore slope of east Taiwan are investigated using a large set of geophysical and sedimentological data. The Taiwan orogen is often considered as one of the most tectonically active regions in the world and also suffers important climatic activity with an average of four typhoons per year. We have mapped in details the morphosedimentary features and characterized the sedimentary facies along offshore eastern Taiwan. There, we show that the slope is driven by a variety of erosional processes from mass wasting to turbidity current. Mass movements such as slides or mass transport deposits (MTDs) are ubiquitous and affect the whole east coast off Taiwan. Detailed core investigations, such as grain size analysis, chemical and mineralogical composition, revealed that turbidite facies range from thin fine-grained turbidites to thick massive turbidite facies. The detailed analysis of turbidite beds allow us to discuss the controlling factors of turbidity current generation. Turbidity currents represent an important sedimentary process that governs the slope morphology off east Taiwan. Triggering mechanisms likely range from slope instabilities related to earthquakes shaking to failure relative to climatic-controlled pulses of sediment supply. We propose that at least two end-members are characteristics in our turbidite records in term of controlling factor:1) Turbidity currents likely generated by tectonic activity and earthquakes shaking in particular; and2) Turbidity currents likely generated by climatic activity such as typhoon-induced floods.
ISSN: 0025-3227

hal-01277768
https://hal.archives-ouvertes.fr/hal-01277768
DOI : 10.1016/j.margeo.2015.05.013

Éditeur(s) : HAL CCSD
Résumé : 28 pages, 6 figures
We study a universal object for the genealogy of a sample in populations with mutations: the critical birth-death process with Poissonian mutations, conditioned on its population size at a fixed time horizon. We show how this process arises as the law of the genealogy of a sample in a large class of critical branching populations with mutations at birth, namely populations converging, in a large population asymptotic, towards the continuum random tree. We extend this model to populations with random foundation times, with (potentially improper) prior distributions g_i: xmapsto x^{-i}, iinZ_+, including the so-called uniform (i=0) and log-uniform (i=1) priors. We first investigate the mutational patterns arising from these models, by studying the site frequency spectrum of a sample with fixed size, i.e. the number of mutations carried by k individuals in the sample. Explicit formulae for the expected frequency spectrum of a sample are provided, in the cases of a fixed foundation time, and of a uniform and log-uniform prior on the foundation time. Second, we establish the convergence in distribution, for large sample sizes, of the (suitably renormalized) tree spanned by the sample genealogy with prior g_i on the time of origin. We finally prove that the limiting genealogies with different priors can all be embedded in the same realization of a given Poisson point measure.
https://hal.archives-ouvertes.fr/hal-01053343

hal-01053343
https://hal.archives-ouvertes.fr/hal-01053343
ARXIV : 1407.7720