Éditeur(s) : HAL CCSD
Résumé : International audience
Association internationnale de pédagogie universitaire
Louvain-La-Neuve, Belgium

hal-01620750
https://hal.univ-antilles.fr/hal-01620750

Éditeur(s) : HAL CCSD
Résumé : International audience
2e assise du CIFFERSE
Dakar, Senegal

hal-01620755
https://hal.univ-antilles.fr/hal-01620755

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
ISSN: 0944-1344

hal-01231841
https://hal.univ-antilles.fr/hal-01231841
DOI : 10.1007/s11356-014-3134-y

Éditeur(s) : Copernicus Gesellschaft Mbh
Résumé : Three methods for automatic detection of mesoscale coherent structures are applied to Sea Level Anomaly (SLA) fields in the South Atlantic. The first method is based on the wavelet packet decomposition of the SLA data, the second on the estimation of the Okubo-Weiss parameter and the third on a geometric criterion using the winding-angle approach. The results provide a comprehensive picture of the mesoscale eddies over the South Atlantic Ocean, emphasizing their main characteristics: amplitude, diameter, duration and propagation velocity. Five areas of particular eddy dynamics were selected: the Brazil Current, the Agulhas eddies propagation corridor, the Agulhas Current retroflexion, the Brazil-Malvinas confluence zone and the northern branch of the Antarctic Circumpolar Current (ACC). For these areas, mean propagation velocities and amplitudes were calculated. Two regions with long duration eddies were observed, corresponding to the propagation of Agulhas and ACC eddies. Through the comparison between the identification methods, their main advantages and shortcomings were detailed. The geometric criterion presents the best performance, mainly in terms of number of detections, duration of the eddies and propagation velocities. The results are particularly good for the Agulhas Rings, which have the longest lifetimes of all South Atlantic eddies.
Ocean Science (1812-0784) (Copernicus Gesellschaft Mbh), 2011 , Vol. 7 , N. 3 , P. 317-334

Droits : Author(s) 2011. This work is distributed under the Creative Commons Attribution 3.0 License. EGU
http://archimer.ifremer.fr/doc/00039/15051/12378.pdf
DOI:10.5194/os-7-317-2011
http://archimer.ifremer.fr/doc/00039/15051/

Éditeur(s) : HAL CCSD
Résumé : International audience
Semantic web standards, tools, ontologies and related technologies have considerably matured in the recent years. Nowadays, accessing a wide catalogue of biological, social, environmental, and ecological data sources helps stakeholders working on biodiversity to answer their complex questions. Will the real time access to web resources effectively support the definition of strategies to conserve and manage biodiversity? How might semantic web technologies help us to handle the complex and heterogeneous big data related to biodiversity? The workshop aims to identify the key challenges faced by the bioinformatics community, discuss potential solutions and identify the opportunities emerging from the trans-disciplinary interactions between Plant Science and Informatics experts. Therefore, we expect the bioinformatics experts to explain how they apply semantic web standards and tools to their scientific topic, from biology, agriculture, agro-ecology, genomics, environmental studies, to social sciences, citizen sciences. Research papers presenting various aspects of semantic web technologies applied to biodiversity data, ranging from position papers to implemented systems descriptions and their evaluation, will be selected. We are particularly interested in the use of the semantic technologies to design and develop systems that supports research on agricultural and wild biodiversity conservation and management for food security. Examples may include strategies for resilience to climate change pressures, sustainability of productive ecosystems, ecosystems services monitoring or territories management, rather than systems supporting only research on climate patterns or soil erosion.
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757

lirmm-00831757
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757/document

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Context: Woodcutting is a very old technology but scientific research is scarce on the subject. In the last 50 years much work on basic mechanisms as well as industrial processes has been done in France. Aims: The specific nature of wood introduces strong differences between wood and metal cutting processes. The paper focuses on French teams' contributions. Results: The basic aspects of the tool–material interaction for different basic modes in woodcutting are highlighted. In primary conversion such as sawing, veneer cutting or green wood chipping, huge progress comes from automation and the possibility of linking the process to log and product quality through new sensors. In secondary processing much has been done on the links between the cutting process, surface qualification and the properties of these surfaces for further processing, such as gluing or coating. Tool wear depends on the cutting process, timber quality, and species. Trade-offs are required in tool technology and coating technologies may improve tool life. Conclusion: A large amount of knowledge and innovation has come from 50 years of worldwide research effort, with France being particularly active in this period. The transfer of skills from metals cutting industry was often a key, but much is needed to move closer to both metal cutting sector and woodcutting skills among craftsmen.
ISSN: 1286-4560

hal-01135156
https://hal.archives-ouvertes.fr/hal-01135156
https://hal.archives-ouvertes.fr/hal-01135156/document
https://hal.archives-ouvertes.fr/hal-01135156/file/Wood_machining_focus_French_research_Thibaut_al_2015.pdf
DOI : 10.1007/s13595-015-0460-2

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
AIMS: Virus detection has often been difficult due to a low concentration in water. In this study, we developed a new procedure based on concentration of virus particles on an innovative support: poly-L-lysine dendrigrafts (DGL), coupled with directed nucleic acid extraction and real-time PCR quantification. METHODS AND RESULTS: This method was evaluated using the bacteriophage MS2 as a model virus. This virus exhibited the size and structural properties of human pathogenic enteric viruses and has often been used to assess new supports of concentration. Moreover, this bacteriophage is also a faecal contamination indicator. In this study, many water filtration conditions were tested (volume of water, concentration, etc.), and more than 80% of bacteriophage were recovered after filtration on polymer, in most conditions. We demonstrated that the method was linear (slope = 0*99 ± 0*04 and Y intercept when x = -0*02 ± 0*28), valid (as manipulators, tested concentrations, volumes of sample and batch of polymer did not have any influence on concentration) and sensitive (allowing to concentrate up to 16,600-fold 1 l of sample and to detect and quantify down to 750 GC l(-1) and 7500 GC l(-1), respectively). CONCLUSIONS: To conclude, this support exhibits high interest to retain viruses and to allow to detect low concentration of virus in water. SIGNIFICANCE AND IMPACT OF THE STUDY: This study gives valuable advance in the methods of concentration and diagnosis of virus in water.
Journal of Applied Microbiology

hal-00828987
https://hal.archives-ouvertes.fr/hal-00828987
DOI : 10.1111/jam.12209
PUBMED : 23551794

Éditeur(s) : HAL CCSD
Résumé : International audience
Journées internationalessur la communication, l'éducation et la culture scientifique et industrielle
Chamonix, France

hal-01620768
https://hal.univ-antilles.fr/hal-01620768
https://hal.univ-antilles.fr/hal-01620768/document
https://hal.univ-antilles.fr/hal-01620768/file/Atelier%20Forissier-ClementJIES2001.pdf

Éditeur(s) : HAL CCSD Society of Nuclear Medicine
Résumé : International audience
ISSN: 0161-5505

hal-01117641
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01117641

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Virus detection has often been difficult due to a low concentration in water. In this study, we developed a new procedure based on concentration of virus particles on an innovative support: poly-L-lysine dendrigrafts (DGL), coupled with directed nucleic acid extraction and real-time PCR quantification. Methods and Results: This method was evaluated using the bacteriophage MS2 as a model virus. This virus exhibited the size and structural properties of human pathogenic enteric viruses and has often been used to assess new supports of concentration. Moreover, this bacteriophage is also a faecal contamination indicator. In this study, many water filtration conditions were tested (volume of water, concentration, etc.), and more than 80% of bacteriophage were recovered after filtration on polymer, in most conditions. We demonstrated that the method was linear (slope = 0 99 0 04 and Y intercept when x = 0 02 0 28), valid (as manipulators, tested concentrations, volumes of sample and batch of polymer did not have any influence on concentration) and sensitive (allowing to concentrate up to 16 600-fold 1 l of sample and to detect and quantify down to 750 GC l 1 and 7500 GC l 1, respectively). Conclusions: To conclude, this support exhibits high interest to retain viruses and to allow to detect low concentration of virus in water. Significance and Impact of the Study: This study gives valuable advance in the methods of concentration and diagnosis of virus in water.
Journal of Applied Microbiology

hal-00932328
https://hal.archives-ouvertes.fr/hal-00932328
DOI : 10.1111/jam.12209

Éditeur(s) : HAL CCSD
Résumé : International audience
Dans une première partie, une approche bibliographique sur les conceptions relatives àla nature et à l'environnement nous a permis de concevoir un questionnaire qui a été proposé à desfuturs enseignants de biologie. Une seconde partie analyse les réponses à l'une des questions : cesfuturs enseignants différencient nettement la nature et l'environnement.
Journées internationales sur la comunication, l'éducation et la culture scientifiques et industrielles
Chamonix, France

hal-01620771
https://hal.univ-antilles.fr/hal-01620771
https://hal.univ-antilles.fr/hal-01620771/document
https://hal.univ-antilles.fr/hal-01620771/file/Forissierchamonix2002.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Journées internationales sur la communication, l'éduaction et la culture scientifiques et industrielles
Chamonix, France

hal-01620774
https://hal.univ-antilles.fr/hal-01620774

Éditeur(s) : HAL CCSD
Résumé : International audience
Journées internationalessur la communication, l'éducation et la culture scientifique et industrielle
chamonix, France

hal-01620769
https://hal.univ-antilles.fr/hal-01620769
https://hal.univ-antilles.fr/hal-01620769/document
https://hal.univ-antilles.fr/hal-01620769/file/Mouelhi%20et%20al_JIES%202002-FINAL.pdf

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Total genomic DNA of eight colonies for each of the two species, Acropora muricata and Porites lutea, sampled on the west coast of Reunion Island, was isolated using DNeasy Blood & Tissue kit (Qiagen™) following the manufacturer’s instructions and sent to GenoScreen, Lille, France (www.genoscreen.fr).
ISSN: 1877-7252

hal-01254248
https://hal.archives-ouvertes.fr/hal-01254248
https://hal.archives-ouvertes.fr/hal-01254248/document
https://hal.archives-ouvertes.fr/hal-01254248/file/G%C3%A9lin%20et%20al.%20-%202015%20-%20Isolation%20and%20characterization%20of%2022%20microsatellit_hal.pdf
DOI : 10.1007/s12686-015-0493-8

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD
Résumé : National audience
La sédimentation en baie du Mont Saint Michel se caractérise par la mixité des apports, presque exclusivement d’origine marine, carbonatés et silicoclastiques. La question du comblement de cet environnement hypertidal et de l’évolution de son trait de côte, représenté dans le fond de baie (sud et ouest) par des barrières coquillières, se pose à l’horizon des décennies à venir. Comment ce comblement va t-il être affecté par le changement climatique global marqué entre autres par l’accélération de la remontée du niveau marin et par des modifications potentielles de faunes (habitats, espèces..etc) auxquelles peut également contribuer le développement d’activités humaines comme la conchyliculture ?Les travaux présentés ici (projet Sédibaie, DDTM35 / Région Basse Normandie) ont pour objectif de quantifier le taux de sédimentation dans le fond de baie du Mont-Saint-Michel depuis les derniers siècles, et cela afin d’appréhender les tendances à venir. Pour ce faire des carottages courts (moy. 75 cm) ont été réalisés selon 5 radiales côte-large réparties de St Benoit des Ondes (près de Cancale) à La Chapelle Ste Anne (à l’Ouest du Mt St Michel). Les carottes ont fait l’objet d’analyses variées (faciès, granulométrie, teneur en carbonate, XRF, Scopix, datations 14C...). Un échantillonnage de surface a également été réalisé afin de caractériser les assemblages faunistiques actuels (malacofaune, microfaune, vivant, mort). Parallèlement, des travaux spécifiques sont menés sur les barrières coquillières (stratigraphie THR, évolution contenu faunistique, processus d’édification..). Les enregistrements étudiés sur les carottes couvrent la sédimentation du dernier millénaire au moins. Ils mettent en évidence le passage entre un environnement de dépôt dominé par l’action des marées, à un environnement de plus haute énergie, sans doute dominé par l’action des houles (tempêtes ?). Ce changement majeur, visible sur quasiment toutes les carottes à une profondeur variant entre 30 et 50 cm, s’opère peu après 1000 ans cal. BP. (à confirmer). Il est attribué à un changement climatique d’échelle au moins régionale (Atlantique nord). La complexite de l’enregistrement sédimentaire au-dessus du passage tidal/houle met en évidence une variabilité de faciès sédimentaires à haute fréquence, probablement liée à une fluctuation du climat de houle (NAO, Petit Age Glaciaire), ainsi que dans la partie supérieure à des changements d’apports bioclastiques relatifs au développement des installations conchylicoles.
25e Réunion des Sciences de la Terre
Caen, France

hal-01413154
https://hal.archives-ouvertes.fr/hal-01413154

Éditeur(s) : HAL CCSD Copernicus Publications on behalf of the European Geosciences Union
Résumé : International audience
During the GWADASEIS cruise (Lesser Antilles volcanic arc, February–March 2009) a very high resolution (VHR) seismic-reflection survey was performed in order to constrain Late Quaternary to Present faulting. The profiles we obtained evidence frequent " ponding " of reworked sediments in the deepest areas, similar to the deposition of Mediterranean " homogenites ". These bodies are acoustically transparent (few ms t.w.t. thick) and are often deposited on the hanging walls of dominantly normal faults, at the base of scarps. Their thickness appears sufficient to compensate (i.e. bury) co-seismic scarps between successive earthquakes, resulting in a flat and horizontal sea floor through time. In a selected area (offshore Montserrat and Nevis islands), piston coring (4 to 7 m long) was dedicated to a sedimento-logical analysis of the most recent of these particular layers. It corresponds to non-stratified homogenous calcareous silty sand (reworked calcareous plankton and minor volcanoclas-tics). This layer can be up to 2 m thick, and overlies fine-grained hemipelagites. The upper centimeters of the latter represent the normal RedOx water/sediment interface. 210 Pb and 137 Cs activities lack in the massive sands, while a normal profile of unsupported 210 Pb decrease is observed in the hemipelagite below, together with a 137 Cs peak corresponding to the Atmospheric Nuclear Experiments (1962). The RedOx level was thus capped by a recent instantaneous major sedimentary event considered as post-1970 AD; candidate seismic events to explain this sedimentary deposits are either the 16 March 1985 earthquake or the 8 October 1974 one (M w = 6.3 and M w = 7.4, respectively). This leads to consider that the syntectonic sedimentation in this area is not continuous but results from accumulation of thick homogen-ites deposited after the earthquakes (as observed in the following weeks after Haiti January 2010 event, McHugh et al., 2011). The existence of such deposits suggests that, in the area of study, vertical throw likely results from cu-mulated effects of separated earthquakes rather than from aseismic creep. Examination of VHR profiles shows that all major co-seismic offsets are recorded in the fault growth sequence and that co-seismic offsets can be precisely estimated. By using a sedimentation rate deduced from 210 Pb decrease curve (0.5 mm yr −1) and taking into account minor reworking events detected in cores, we show that the Redonda system may have been responsible for five > M 6 events during the last 34 000 yr. The approach presented in this work differs from fault activity analyses using displaced sets of isochronous surfaces and postulating co-seismic offsets. Combining VHR seismic imagery and coring we can decipher co-seismic vs. slow continuous displacement, and thus actually estimate the amplitude and the time distribution of major co-seismic offsets.
Natural Hazards and Earth System Science

insu-01585969
https://hal-insu.archives-ouvertes.fr/insu-01585969
https://hal-insu.archives-ouvertes.fr/insu-01585969/document
https://hal-insu.archives-ouvertes.fr/insu-01585969/file/nhess-12-1755-2012-beck.pdf
DOI : 10.5194/nhess-12-1755-2012

Éditeur(s) : HAL CCSD
Résumé : International audience
3rd international conference of the european science education research association
Thessaloniki, Greece

hal-01620740
https://hal.univ-antilles.fr/hal-01620740

Éditeur(s) : HAL CCSD
Résumé : International audience
BIOLOGICAL IDENTITY IS NOT ONLY GENETICAL IDENTITY : A CHALLENGE FOR A CITIZEN TEACHING. The 20 th century marked the success of the genetics. The beginning 21 th century is aware of the limits of the " all-genetics ". Nevertheless, the curricula of the secondary school are not yet modified in this way. The present work analyses the conceptions of 33 future Biology teachers, and analyses also, in 3 scholar textbooks (for pupils 16 years old), the chapters related to the notion of " biological identity ". The results show that this notion is reduced to the notion of " genetical program " , and associated with a model of linear causal determinism of the phenotype by the genotype. The scientific and citizen dangers of this model are discussed. The challenge is now to teach a new model with interactions between the genotype and its environment : the epigenesis, and particularly the cerebral epigenesis. KEYWORDS : Biology Education – Genetics – Genetical determinism – Phenotype – Cerebral epigenesis-Conceptions of teachers – Curricula – Scholar textbooks-RÉSUMÉ : Alors que le 20 ème siècle est celui du succès de la génétique, le 21 ème siècle s'ouvre avec la conscience des limites du " tout-génétique ". Cependant les programmes de Biologie au Lycée tardent à se modifier dans ce sens. Le présent travail analyse les conceptions de 33 futurs enseignants de Biologie, ainsi que, dans 3 manuels scolaires de la classe de Première S, les chapitres relatifs à la notion d'identité biologique. Il en ressort que celle-ci est limitée à la notion de programme génétique, avec un modèle de déterminisme causal linéaire du phénotype par le génotype.
Bioed2000 the challenge of the next century
Paris, France

Droits : info:eu-repo/semantics/OpenAccess
hal-01620726
https://hal.univ-antilles.fr/hal-01620726
https://hal.univ-antilles.fr/hal-01620726/document
https://hal.univ-antilles.fr/hal-01620726/file/clementforissierBioEd2001.pdf

Éditeur(s) : John Libbey Eurotext ltd
Résumé : The new sustainable development data repository requires new analysis grids, in particular for factors accounted for in productive system typologies. This paper, based on the aquaculture example, analyses the diversity in aquaculture systems with respect to sustainable development. Various typologies are obtained by evaluating structural and functional approaches integrating variables related to production and regulation systems and to the territorial insertion of fish farms. Categories have been defined on a scale based on a set of five sites, which are representative of a wider range of aquaculture systems. Use of these categories goes beyond the local typologies and prepares a generic meta-typology classification for the systems. This generic classification is then compared to the views of sustainable development held by the fish farmers working on the various types of farms.
Cahiers Agricultures (1166-7699) (John Libbey Eurotext ltd), 2009-04 , Vol. 18 , N. 2 , P. 199-210

Droits : 2009 John Libbey Eurotext ltd
http://archimer.ifremer.fr/doc/2009/publication-6560.pdf
DOI:10.1684/agr.2009.0297
http://archimer.ifremer.fr/doc/00000/6560/