Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Forest ecosystems have integral roles in climate stability, biodiversity and economic development. Soil stewardship is essential for sustainable forest management. Organic matter (OM) removal and soil compaction are key disturbances associated with forest harvesting, but their impacts on forest ecosystems are not well understood. Because microbiological processes regulate soil ecology and biogeochemistry, microbial community structure might serve as indicator of forest ecosystem status, revealing changes in nutrient and energy flow patterns before they have irreversible effects on long-term soil productivity. We applied massively parallel pyrosequencing of over 4.6 million ribosomal marker sequences to assess the impact of OM removal and soil compaction on bacterial and fungal communities in a field experiment replicated at six forest sites in British Columbia, Canada. More than a decade after harvesting, diversity and structure of soil bacterial and fungal communities remained significantly altered by harvesting disturbances, with individual taxonomic groups responding differentially to varied levels of the disturbances. Plant symbionts, like ectomycorrhizal fungi, and saprobic taxa, such as ascomycetes and actinomycetes, were among the most sensitive to harvesting disturbances. Given their significant ecological roles in forest development, the fate of these taxa might be critical for sustainability of forest ecosystems. Although abundant bacterial populations were ubiquitous, abundant fungal populations often revealed a patchy distribution, consistent with their higher sensitivity to the examined soil disturbances. These results establish a comprehensive inventory of bacterial and fungal community composition in northern coniferous forests and demonstrate the long-term response of their structure to key disturbances associated with forest harvesting. The ISME Journal (2012) 6, 2199-2218; doi:10.1038/ismej.2012.84; published online 2 August 2012
ISSN: 1751-7362

hal-01546179
https://hal.archives-ouvertes.fr/hal-01546179
DOI : 10.1038/ismej.2012.84

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
We present here a synthesis of the evolution of rifted continental margin systems in the Gulf of Aden. These margins are volcanic to the west of the Gulf of Aden, where they are influenced by the Afar hotspot, and non-volcanic east of longitude 46° E. The combined use of magnetics, gravity, seismic reflection, field observations (tectonic, stratigraphic and sedimentological) and oil well data allowed us to obtain better constraints on the timing of continental rifting and seafloor spreading. From the Permo-Triassic to the Oligocene, the Arabian-African plate was subject to distributed extension, probably due, at least from the Cretaceous, to tensile stresses related to the subduction of the Tethysian slab in the north. In Late Eocene-Early Oligocene, 34-33 Ma ago, rifting started to localise along the future area of continental breakup. Initially guided by the inherited basins, continental rifting then occurred synchronously over the entire gulf before becoming localised on the northern and southern borders of the inherited grabens, in the direction of the Afar hotspot. In the areas with non-volcanic margins (in the east), the faults marking the end of rifting trend parallel to the inherited grabens. Only the transfer faults cross-cut the inherited grabens, and some of these faults later developed into transform faults. The most important of these transform faults follow a Precambrian trend. Volcanic margins were formed in the west of the Gulf, up to the Guban graben in the southeast and as far as the southern boundary of the Bahlaf graben in the northeast. Seaward dipping reflectors can be observed on many oil industry seismic profiles. The influence of the hotspot during rifting was concentrated on the western part of the gulf. Therefore, it seems that the western domain was uplifted and eroded at the onset of rifting, while the eastern domain was characterised by more continuous sedimentation. The phase of distributed deformation was followed by a phase of strain localisation during the final rifting stage, just before formation of the Ocean-Continent Transition (OCT), in the most distal graben (DIM graben). About 20 Ma ago, at the time of the continental break-up, the emplacement of the OCT started in the east with exhumation of the subcontinental mantle. Farther west, the system was heated up by the strong influence of the Afar hotspot, which led to breakup with much less extension. In the Gulf of Aden (s.str), up to the Shukra El Sheik fracture zone, oceanic spreading started 17.6 Ma ago. West of this fracture zone, oceanic accretion started 10 Ma ago, and 2 Ma ago in the Gulf of Tadjoura. Post-rift deformation of the eastern margins of the Gulf of Aden can be seen in the distal and proximal domains. Indeed, the substantial post-rift uplift of these margins could be associated with either the continental break-up, or activity of the Afar hotspot and related volcanic/magmatic activity. Uplift of the northern proximal margin was still active (e.g. stepped beach rocks exposed at 60 m of 2 Ma; 30 m of 35,200 years; 10 and 2 m) and active volcanoes can be inferred at depths of between 70 and 200 km beneath the margin (at 5-10 km distance from the coast). On the distal margin, heat flow measurements show a high value that is associated with post-rift volcanic activity and the development of a volcano (with flows and sills) shortly after the formation of the OCT. The Afar hotspot is therefore important for several reasons. It allows the localisation of deformation along the Red Sea/Aden system and the rapid opening of the Gulf after the continental break-up; its influence also seems to persist during the post-rift period.
ISSN: 1866-7411

hal-01053089
https://hal.archives-ouvertes.fr/hal-01053089
DOI : 10.1007/s12517-011-0475-4

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Tyrrhenian Sea is usually interpreted to be a Neogene back-arc basin that opened by continental rifting and oceanic spreading caused by the eastward migration of the Apennine subduction system during Miocene and Pliocene times. Rifting of the southern Tyrrhenian Sea started first along the Eastern Sardinian margin during the middle to late Miocene times, including the Messinian. The "METYSS" project aims at better constraining the relationships between crustal tectonics, salt tectonics and sedimentation from Messinian times to present-day. The "METYSS 1" cruise (2009) allowed to acquire about 1200 km of HR seismic-reflection profiles along the Eastern Sardinian margin, Western Tyrrhenian Sea. This data set clearly illustrates that this area has been highly dissected during the rifting stage by N-S trending normal faults delineating ridges and basins, as previously described. The Messinian seismic markers (UU and MU) locally display fan-shaped stratal geometries, but the mechanism responsible for such geometries, salt tectonics or rifting, has yet to be carefully deciphered. We also mapped the spatial distribution of the mobile salt. The highly variable thickness of the small confined salt basins may be related to the initial pre-Messinian basin geometry, to the fact that salt deposition was syn-rift or to salt movement. Southeastward, salt tectonics is vigorous in unconfined basins and appears to have started early during the UU deposition. More surprisingly, our data demonstrate that some of the major faults have been significantly reactivated during the post-rift period, up to late Quaternary time, as shown by bathymetric scarps and associated debris flows. Moreover, some of this post-rift deformation can be evidenced within the Plio-Quaternary sequence by a regional unconformity. The post-Miocene deformation style varies greatly between different areas of the margin, and can also be strongly influenced by the presence or absence of mobile Messinian salt.
ISSN: 0040-1951

hal-00996665
https://hal.archives-ouvertes.fr/hal-00996665
DOI : 10.1016/j.tecto.2013.12.015

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers (IEEE)/Optical Society of America(OSA)
Résumé : International audience
Nanometric displacement measurements by Extrinsic Fiber Fabry-Perot interferometers (EFPI) is extremely susceptible to external environmental changes. Temperature, in particular, has a remarkable influence on the optical power and wavelength of the laser diode in use, in addition to the thermal expansion of the mechanical structure. In this paper we propose an optimization of the EFPI sensor in order to use it for very long-term (more than one year) and for high-precision displacement measurements. For this purpose, a real time and adaptive estimation procedure based on a homodyne technique and a Kalman filter is established. During a sinusoidal laser diode current modulation, the Kalman filter provides a correction of the amplitude drift caused by the resultant optical power modulation and external perturbations. Besides, stationary temperature transfer operators are estimated via experimental measurements to reduce the additive thermal noise induced in the optical phase and mechanical components.
ISSN: 0733-8724

hal-00876339
https://hal.archives-ouvertes.fr/hal-00876339
DOI : 10.1109/JLT.2012.2194476

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
High sea surface temperature accompanied by high levels of solar irradiance is responsible for the disruption of the symbiosis between cnidarians and their symbiotic dinoflagellates from the genus Symbiodinium. This phenomenon, known as coral bleaching, is one of the major threats affecting coral reefs around the world. Because an important molecular trigger to bleaching appears related to the production of reactive oxygen species (ROS), it is critical to understand the function of the antioxidant network of Symbiodinium species. In this study we investigated the response of two Symbiodinium species, from contrasting environments, to a chemically induced oxidative stress. ROS produced during this oxidative burst reduced photosynthesis by 30 to 50% and significantly decreased the activity of superoxide dismutase. Lipid peroxidation levels and carotenoid concentrations, especially diatoxanthin, confirm that these molecules act as antioxidants and contribute to the stabilization of membrane lipids. The comparative analysis between the two Symbiodinium species allowed us to highlight that Symbiodinium sp. clade A temperate was more tolerant to oxidative stress than the tropical S. kawagutii clade F. These differences are very likely a consequence of adaptation to their natural environment, with the temperate species experiencing conditions of temperature and irradiance much more variable and extreme.
ISSN: 0140-7791

hal-01546161
https://hal.archives-ouvertes.fr/hal-01546161
DOI : 10.1111/pce.12825

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
New outcrops in the Sinis peninsula (Sardinia, Italy) allow a detailed description of the Messinian erosion surface. The correlation between outcrops, industrial seismic data and data collected offshore Oristano from a recent cruise permits reconstruction of the geometry of this surface from presently emerged interfluves to the deep canyons offshore, with: - onshore: an eroded karstic plateau presently cropping out over a 20 km × 5 km area. Well-preserved karst structures occur locally and can form several metres high reliefs. The southernmost edge of the plateau is limited by a cliff. The karstic plateau and the cliff are sealed by transgressive deposits of Pliocene age; - offshore, an interfluve zone with a mostly flat and low-angle dipping plateau, westward dissected by paleovalleys which were identified down to a depth of 2000 m. In the Oristano Gulf, Messinian paleovalleys were also identified. The Capo San Marco paleocliff was probably located on the edge of a canyon. Onshore, only one major erosion surface was identified, located at the top the Messinian sequence. Offshore, this surface extends down to the abyssal plain. The surface was emplaced above deposits related to the Terminal Carbonate Complex. This indicates that the marginal evaporites are older than the major drawdown of the Mediterranean sea-level. The major drawdown is related to the deposition of the deep evaporites.
ISSN: 0037-0738

hal-00407864
https://hal.archives-ouvertes.fr/hal-00407864
DOI : 10.1016/j.sedgeo.2008.06.005

Éditeur(s) : HAL CCSD springer Link
Résumé : International audience
Experimental Astronomy

hal-01094521
https://hal.archives-ouvertes.fr/hal-01094521
BIBCODE : 2014ExA...tmp...41R
DOI : 10.1007/s10686-014-9383-4
ARXIV : 1310.0696

Éditeur(s) : HAL CCSD Seismological Society of America
Résumé : With the assistance of the ASTER team (M. Arnold, G. Aumaître, D. Bourlès, and K. Keddadouche)
International audience
The Bulnay earthquake of 23 July 1905 (Mw 8.3–8.5), in north‐central Mongolia, is one of the world’s largest recorded intracontinental earthquakes and one of four great earthquakes that occurred in the region during the twentieth century. The 375 km long surface rupture of the left‐lateral, strike‐slip, N095°E‐trending Bulnay fault associated with this earthquake is remarkable for its pronounced expression across the landscape and for the size of features produced by previous earthquakes. Our field observations suggest that in many areas the width and geometry of the rupture zone is the result of repeated earthquakes; however, in those areas where it is possible to determine that the geomorphic features are the result of the 1905 surface rupture alone, the size of the features produced by this single earthquake are singular in comparison to most other historical strike‐slip surface ruptures worldwide. Along the 80 km stretch, between 97.18° E and 98.33° E, the fault zone is characterized by several meters width and the mean left‐lateral 1905 offset is 8.9±0.6  m with two measured cumulative offsets that are twice the 1905 slip. These observations suggest that the displacement produced during the penultimate event was similar to the 1905 slip. Morphotectonic analyses carried out at three sites along the eastern part of the Bulnay fault allow us to estimate a mean horizontal slip rate of 3.1±1.7  mm/yr over the Late Pleistocene–Holocene period. In parallel, paleoseismological investigations show evidence for two earthquakes prior to the 1905 event, with recurrence intervals of ∼2700–4000  yrs.
ISSN: 0037-1106

hal-01179837
https://hal.archives-ouvertes.fr/hal-01179837
https://hal.archives-ouvertes.fr/hal-01179837v2/document
https://hal.archives-ouvertes.fr/hal-01179837/file/rizza2015.pdf
DOI : 10.1785/0120140119

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Grey (Halichoerus grypus) and harbour seals (Phoca vitulina) are sympatric seal species, but they display distinct strategies of habitat use and connectivity between haulout sites. The distribution patterns and variations in relative abundance of both species were investigated along the French coast of the English Channel, at the southern limit of their range where seal numbers are increasing. Regular censuses conducted at all main haulout sites in mainland France showed significant seasonal variations at most sites, with more harbour seals counted during summer (breeding and moulting seasons), and more grey seals during summer only in the eastern English Channel. Trends in maximum haulout numbers at haulout sites showed a significant increase over the last five years, ranging from 9.7 to 30.9% per year for harbour seals, and from 5.8% (in the western English Channel) to 49.2% (in the eastern English Channel) per year for grey seals. These rates of increase in grey seal numbers are not linked to local pup production and most probably result from seal movements from the southwest British Isles and the North Sea, respectively. Aerial surveys conducted across the English Channel showed that most seal observations at sea were concentrated in the north-eastern English Channel. Telemetry showed that the 28 harbour seals tracked remained highly coastal, within a radius of 100 km from their haulout sites, and did not move to other known colonies. Grey seals moved much greater distances, reaching up to 1200 km from their capture site. More than half of the 45 grey seals tracked crossed the English Channel, especially during the breeding season, moving to known colonies in the southwest British Isles and the North Sea. Combining individual tracks and long-term surveys of the seal populations allowed a better understanding of the dynamics of these populations and their connectivity at a larger regional scale. The findings provide direct information for the management of grey and harbour seals within the frame of the Marine Strategy Framework Directive, and highlight focus areas where potential interactions between the two species should be monitored.
ISSN: 0967-0645

hal-01509674
https://hal.archives-ouvertes.fr/hal-01509674
DOI : 10.1016/j.dsr2.2017.04.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This work focuses on the analysis of a unique set of seismological data recorded by two temporary networks of seismometers deployed onshore and offshore in the Central Lesser Antilles Island Arc from Martinique to Guadeloupe islands. During the whole recording period, extending from January to the end of August 2007, more than 1300 local seismic events were detected in this area. A subset of 769 earthquakes was located precisely by using HypoEllipse. We also computed focal mechanisms using P-wave polarities of the best azimuthally constrained earthquakes. We detected earthquakes beneath the Caribbean forearc and in the Atlantic oceanic plate as well. At depth seismicity delineates the Wadati-Benioff Zone down to 170 km depth. The main seismic activity is concentrated in the lower crust and in the mantle wedge, close to the island arc beneath an inner forearc domain in comparison to an outer forearc domain where little seismicity is observed. We propose that the difference of the seismicity beneath the inner and the outer forearc is related to a difference of crustal structure between the inner forearc interpreted as a dense, thick and rigid crustal block and the lighter and more flexible outer forearc. Seismicity is enhanced beneath the inner forearc because it likely increases the vertical stress applied to the subducting plate.
ISSN: 0040-1951

hal-01052679
https://hal.archives-ouvertes.fr/hal-01052679
DOI : 10.1016/j.tecto.2011.08.006

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : 21st International Colloquium on Animal Cytogenetics and Gene Mapping (ICACGM), Naples, ITALY, JUN 07-10, 2014
International audience
o abstract
ISSN: 0967-3849

hal-01544759
https://hal.archives-ouvertes.fr/hal-01544759

Éditeur(s) : HAL CCSD Springer International Publishing
Résumé : International audience
This two-volume book set focuses on the Siberian sturgeon. Acipenser baerii Brandt 1869, one of the 27 “existing” sturgeon species, is a native species of the Siberian catchments, where – as in many other parts of the world – the sturgeon populations are now threatened. Sturgeon farming practices targeting caviar and meat production have been expanding worldwide since the 1990s, and have seen a further increase since the turn of the century. Among the handful of sturgeon species used for significant production, the most dominant is the Siberian sturgeon. Given its peculiar phylogenetic position as a chondrostei and its use as a biological model in e.g. France, the species has also attracted the attention of biologists.
The Siberian Sturgeon (Acipenser baerii, Brandt, 1869)

ISBN : 978-3-319-61925-5
hal-01563969
http://hal.upmc.fr/hal-01563969

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
At the North-Ecuadorian convergent margin (1°S–1.5°N), the subduction of the rough Nazca oceanic plate leads to tectonic erosion of the upper plate and complex seismogenic behavior of the megathrust. We used three selected pre-stack depth migrated, multi-channel seismic reflection lines collected during the SISTEUR cruise to investigate the margin structure and decipher the impact of the subducted Atacames seamounts on tectonic erosion, interseismic coupling, and seismogenesis in the region of the 1942 Mw7.8 earthquake.This dataset highlights a subducted ∼30×40 km∼30×40 km, double-peak seamount that belongs to the Atacames seamount chain and that is associated with a deep morphologic re-entrant containing mass transport deposits.The seamount subduction uplifted the margin basement by ∼1.6 km and pervasively broke the margin by deep and intense reverse faulting ahead of the seamount, a process that is likely to weaken considerably the margin. In the seamount wake, the basement reverse fault system rotated counter-clockwise. This faulted basement is overlain with slope sediment sliding along listric normal faults that sole out onto the BSR. This superposition of deep tectonic contraction within the basement and shallow gravitational extension deformation within the sediment highlights the key role of gas hydrate on outer slope erosion.In addition to long-term regional basal erosion, the margin basement has thinned locally by an extra 0.8–1 km in response to the subduction of the Atacames seamount chain and hydrofracturing by overpressured fluids at the margin toe. This pervasively and deeply fractured margin segment is associated with a seismically quiet and GPS-modeled low interseismic coupling corridor that terminates downdip near the 1942 epicenter and locked zone. We suggest that the deeply buried double-peak Atacames seamount triggered the 1942 earthquake ahead of its leading flank. This result supports previous studies proposing that subducted seamounts provide unfavorable conditions for locking the updip segment of the plate boundary limiting the updip extent of seismogenic zones, but may favor large subduction earthquakes at greater depths.
ISSN: 0012-821X

hal-01256399
https://hal.archives-ouvertes.fr/hal-01256399
DOI : 10.1016/j.epsl.2015.10.043

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Knowing the slip amplitudes that large earthquakes produced in prehistorical times is one key to anticipate the magnitude of large forthcoming events. It is long known that the morphology is preserving remnants of paleoearthquake slips in the form of fault-offset landforms. However, the measured offsets that can be attributed to the most recent paleoearthquakes are generally few along a fault, so that they rarely allow recovering the slip distributions and largest slips of these earthquakes. We acquired ~1 m resolution airborne lidar data on a 30 km stretch of a fast-slipping strike-slip fault (eastern Hope Fault, New Zealand) located in a region of high alluvial dynamics where landforms are rapidly evolving. Data analysis reveals >200 offset landforms; only 30% allow a good to moderate quality offset measurement. From these good to moderate quality measures, we recover the slip-length distributions and largest slips of the four most recent large paleoearthquakes and find evidence of 4–6 prior events. The record suggests that large earthquake slip recurred in multiples of about 4 m along the 30 km stretch. Although they have larger uncertainties, the more numerous lower-quality offsets that we also measured reveal a similar earthquake slip record. This shows that, although offset landforms are partly degraded in dynamically active landscapes, they store valuable information on paleoearthquake slips. This information might be recovered provided that the morphology is analyzed at high resolution and " continuously " over a significant fault length. Remote lidar data are powerful to perform such analyses.
ISSN: 2169-9313

insu-01469219
https://hal-insu.archives-ouvertes.fr/insu-01469219
https://hal-insu.archives-ouvertes.fr/insu-01469219/document
https://hal-insu.archives-ouvertes.fr/insu-01469219/file/Manighetti_et_al-2015-Journalsur Geophysical_Research__Solid_Earth.pdf
DOI : 10.1002/2014JB011787

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Collisional mountain belts grow as a consequence of continental plate convergence and eventuallydisappear under the combined effects of gravitational collapse and erosion. Using a decade ofGPS data, we show that the western Alps are currently characterized by zero horizontal velocityboundary conditions, offering the opportunity to investigate orogen evolution at the time ofcessation of plate convergence. We find no significant horizontal motion within the belt, but GPS andlevelling measurements independently show a regional pattern of uplift reaching ~2.5 mm/yr in thenorthwestern Alps. Unless a low viscosity crustal root under the northwestern Alps locally enhancesthe vertical response to surface unloading, the summed effects of isostatic responses to erosion andglaciation explain at most 60% of the observed uplift rates. Rock-uplift rates corrected from transientglacial isostatic adjustment contributions likely exceed erosion rates in the northwestern Alps. In theabsence of active convergence, the observed surface uplift must result from deep-seated processes.
ISSN: 2045-2322

hal-01357450
https://hal.archives-ouvertes.fr/hal-01357450
https://hal.archives-ouvertes.fr/hal-01357450/document
https://hal.archives-ouvertes.fr/hal-01357450/file/noquet2016.pdf
DOI : 10.1038/srep28404

Éditeur(s) : HAL CCSD
Résumé : International audience
A fiber interferometer interfaced to 3 geo-mechanical elements is presented for applications in geophysics. The fiber sensor is based on an extrinsic fiber Fabry-Perot interferometer (EFFPI) which incorporates a modulation scheme to lock the interferometer at quadrature and to enable displacement measurements below a quarter of the interrogating wavelength. It operates over a relatively large frequency dynamic of ~500000 with a precision better than 2 nm. The fiber interferometer is next interfaced to a differential hydrostatic long baseline inclinometer, a 3-axis borehole tiltmeter and a single-axis seismometer, respectively. Results obtained demonstrate that the fiber interferometrically-interrogated instruments exhibit performances equivalent to or even surpassing those of the reference instruments employed for comparison during their deployment to an underground test site since March 2012. Keywords—modulation-based extrinsic fiber Fabry-Perot interferometer; fiber optique hydrostatic inclinometer; fiber optique borehole tiltmeter; fiber optique seismometer
IEEE SENSORS 2015
Busan, South Korea

hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963
https://hal.archives-ouvertes.fr/hal-01265963/document
https://hal.archives-ouvertes.fr/hal-01265963/file/HCS3.pdf
DOI : 10.1109/ICSENS.2015.7370316

Éditeur(s) : HAL CCSD Inter-Research
Résumé : International audience
Ecological connectivity is important for effective marine planning and biodiversity conservation. Our aim was to identify factors important in influencing variation in benthic community structure on shallow rocky reefs in 2 regions of the Mediterranean Sea with contrasting oceanographic regimes. We assessed beta (β) diversity at 146 sites in the littoral and shallow sub-littoral from the Adriatic/Ionian Seas (eastern region) and Ligurian/Tyrrhenian Seas (western region) using a null modelling approach to account for variation in species richness. The distance decay relationship between species turnover within each region and geographic distance by sea was determined using generalised linear models. Mantel tests were used to examine correlations between β diversity and connectivity by ocean currents, estimated from Lagrangian dispersal simulations. Variation in β diversity between sites was partitioned according to environmental and spatial components using a distance-based redundancy approach. Species turnover along a gradient of geographic distance was greater by a factor of 3 to 5 in the western region than the eastern region, suggesting lower con-nectivity between sites. β diversity was correlated with connectivity by ocean currents at both depths in the eastern region but not in the western region. The influence of spatial and environmental predictors of β diversity varied considerably between regions, but was similar between depths. Our results highlight the interaction of oceanographic, spatial and environmental processes influencing benthic marine β diversity. Persistent currents in the eastern region may be responsible for lower observed β diversity compared to the western region, where patterns of water circulation are more variable.
Marine Ecology Progress Series

Droits : http://creativecommons.org/licenses/by/
hal-01357935
https://hal-univ-perp.archives-ouvertes.fr/hal-01357935
https://hal-univ-perp.archives-ouvertes.fr/hal-01357935/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01357935/file/m553p001.pdf
DOI : 10.3354/meps11783

Éditeur(s) : HAL CCSD
Résumé : International audience
The prevalence of bone deformities, particularly linked with mineral deficiency, is an important issue for fish production. Juvenile triploid rainbow trout (Oncorhynchus mykiss) were fed a low-phosphorus (P) diet for 27 weeks (60 to 630 g body mass). At study termination, 24.9% of the fish fed the low-P diet displayed homogeneous biconcave vertebrae (deformed vertebrae phenotype), while 5.5% displayed normal vertebral phenotypes for the entire experiment. The aim of our study was to characterize the deformed phenotype and identify the putative genes involved in the appearance of P deficiency-induced deformities. Both P status and biomechanical measurements showed that deformed vertebrae were significantly less mineralized (55.0 ± 0.4 and 59.4 ± 0.5,% ash DM, for deformed and normal vertebrae, respectively) resulting in a lower stiffness (80.3 ± 9.0 and 140.2 ± 6.3 N/mm, for deformed and normal phenotypes, respectively). The bone profiles based on μCT observations showed no difference in the osteoclastic resorption while no difference in matrix production was observed between deformed (total bone area 5442.0 ± 110.1 μm2) and normal vertebrae (total bone area 5931.2 ± 249.8 μm2) in this study. Consequently, the lower P content rather results from a reduced degree of mineralization in the deformed phenotype. Finally, we quantified differential gene expression between deformed vertebrae (pronounced biconcave) and normal phenotype by employing deep RNA-sequencing and mapping against a reference bone transcriptome for rainbow trout. In total, 1289 genes were differentially expressed. Among them, in deformed fish we observed that BGLAP, MGP and NOG, an inhibitor of BMP signalling pathway, were up-regulated while COL11a1 was down-regulated. These genes are central actors involved in the reduced degree of mineralization triggering vertebral deformities. These results will further the understanding of P deficiency-induced deformities; hence providing new tools for improved P management in production settings
Journal of Next Generation Sequencing & Applications

hal-01545768
https://hal.archives-ouvertes.fr/hal-01545768
DOI : 10.4172/2469-9853.1000112

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The dating of the uplift onset of the Mongolian mountain ranges, the northernmost relief associated with the India-Eurasia convergence, is a fundamental issue to better understand the mechanisms of propagation of the Cenozoic transpressive deformation in Central Asia. Using apatite fission tracks we determined the timing and strain rates of the tectonics affecting the Gurvan Bogd system, in the Gobi-Altay, since the Middle Mesozoic to the Late Cenozoic. The region was firstly affected by a Lower-Middle Jurassic tectonic phase, characterized by a vertical crustal movement larger than 2 km. Then followed a protracted period without major crustal vertical movements until the last uplift phase. The peneplanation of the Jurassic relief produced an erosional surface that has undergone negligible denudation or sedimentation for more than 100 Ma. This same surface corresponds to the present summit plateaux of the massifs, standing about 2000 m above the surrounding region, which corresponds to the vertical movement produced by the ongoing uplift. Modelling of fission track data from the massifs of Ih Bogd and Baga Bogd shows that this uplift phase probably started at 5 ± 3 Ma. The Gobi-Altay mountain range appears therefore as one of the youngest mountain ranges in Central Asia, which is consistent with the idea of a northward propagation of the transpressional deformation from the Himalayan front to the Siberian craton. The Cenozoic uplift rate of the massifs is estimated to be between 0.25 and 1 mm/yr, which is slightly higher than the upper Pleistocene vertical slip rates of the bordering faults. This suggests that thrust faults observed within the massifs would increase the uplift rate inside the massifs compared to the uplift rate determined at their boundaries.
ISSN: 0012-821X

insu-00191116
https://hal-insu.archives-ouvertes.fr/insu-00191116
DOI : 10.1016/j.epsl.2007.04.047