Éditeur(s) : Society for General Microbiology
Résumé : A novel piezotolerant, mesophilic, facultatively anaerobic, organotrophic, polarly flagellated bacterium (strain LT13a(T)) was isolated from a deep sediment layer in the Nankai Trough (Leg 190, Ocean Drilling Program) off the coast of Japan. This organism used a wide range of organic substrates as sole carbon and energy sources: pyruvate, glutamate, succinate, fumarate, lactate, citrate, peptone and tryptone. Oxygen, nitrate, fumarate, ferric iron and cystine were used as electron acceptors. Maximal growth rates were observed at a hydrostatic pressure of 10 MPa. Hydrostatic pressure for growth was in the range 0.1-50 MPa. Predominant cellular fatty acids were 16:1 omega7c, 15: 0 iso, 16: 0 and 13: 0 iso. The G + C content of the DNA was 44.9 mol%. On the basis of 16S rRNA gene sequences, strain LT13a(T) was shown to belong to the gamma-Proteobacteria, being closely related to Shewanella putrefaciens (98%), Shewanella oneidensis (97%) and Shewanella baltica (96 %). Levels of DNA homology between strain LT13a(T) and S. putrefaciens, S. oneidensis and S. baltica were < 20 %, indicating that strain LT13a(T) represents a novel species. Genetic evidence and phenotypic characteristics showed that isolate LT13a(T) constitutes a novel species of the genus Shewanella, Because of the deep origin of the strain, the name Shewanella profunda sp. nov. is proposed, with LT13a(T) (= DSM 15900(T)-JCM 12080(T)) as the type strain.
International journal of systematic and evolutionary microbiology (1466-5026) (Society for General Microbiology), 2004-11 , Vol. 54 , N. 6 , P. 1943-1949

Droits : 2004 International Union of Microbiological Societies
http://archimer.ifremer.fr/doc/2004/publication-590.pdf
DOI:10.1099/ijs.0.03007-0
http://archimer.ifremer.fr/doc/00000/590/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Melt generation in the continental crust is thought to significantly influence seismic bulk velocities and anisotropy, although existing laboratory data provide limited constraints on such seismic attributes. In this study we measured ultrasonic compressional wave speeds (Vp) and anisotropy during sample compaction, mica-breakdown and melt-generation in synthetic, foliated quartz–muscovite aggregates. Measurements were performed at peak conditions of 300 MPa hydrostatic confining pressure and 750 °C, over a six hour time period, for three separate samples where wave propagation directions were aligned at 0°, 45° and 90° with respect to the foliation plane. The experiments are initially marked by sample compaction and rapid reduction in porosity (from 25% to <2 vol%), with a corresponding increase in Vp. During initial stages of the experiment Vp ranges from 4.65 to 5.45 km/s, depending on the direction of the P wave propagation, resulting in up to ∼16% anisotropy, which originates mainly from the preferred orientation of muscovite and possible incipient melt lenses oriented parallel to foliation. As the experiment progresses the bulk Vp decreases gradually and Vp anisotropy drops from ∼16% to ∼2% after five hours into the experiment. The drop in anisotropy is caused by muscovite-breakdown and increasing amount of partial melting of the aggregate. The bulk velocities are considerably lower than predicted for a mixture of muscovite and β-quartz (stable at 300 MPa and 750 °C). Thermodynamic modeling indicates that mica breakdown and production of melt with ∼2 wt% dissolved water in the aggregate can explain the low Vp, even though β-quartz is stable; the modeled Vp is ∼4.75 km/s at 300 MPa and 750 °C. These ultrasonic attributes signify movement of the melt to fill vacant pores and coating grain boundaries, effectively connecting melt films and reducing seismic anisotropy. The results may apply to regions where crustal melting is on-going, in particular regions of elevated temperature that are only weakly deforming, with coupled anomalously low bulk velocities and seismic anisotropy.
ISSN: 0012-821X

hal-01243569
https://hal.archives-ouvertes.fr/hal-01243569
DOI : 10.1016/j.epsl.2015.05.039

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Tangential strains were measured with strain gauges at the surface of xylem and inner bark of saplings of Cryptomeria japonica D. Don. and Fagus silvatica L. during a pressurization test. The test consists in submitting the whole sapling to an artificially imposed hydrostatic pressure of increasing magnitude. The elastic response of the stems was found linear both at the surface of xylem and inner bark. A simple geometric model allows to compute radial strains in each tissue from tangential strain data. Inside inner bark, radial strains are much larger than tangential strains, because tangential strains are restrained by the core of wood. The material compliance of each tissue was computed as the ratio between the radial strain and the pressure that caused it. The material compliance of xylem is much lower than that of inner bark, but, as its thickness is much larger, its contribution to the apparent behavior of the stem is not negligible. Computation of material compliances by this pressurization test provides information about the specific behavior of each tissue in response to hydrostatic pressure. This can be used to estimate and interpret the calibration factor linking the water status of the plant to the apparent strain measured at its surface.
ISSN: 0931-1890

hal-01031900
https://hal.archives-ouvertes.fr/hal-01031900
DOI : 10.1007/s00468-006-0061-7

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Temperature and fluid pressure conditions control rock deformation and mineralization on geological faults, and hence the distribution of earthquakes1. Typical intraplate continental crust has hydrostatic fluid pressure and a near-surface thermal gradient of 31 ± 15 degrees Celsius per kilometre2, 3. At temperatures above 300–450 degrees Celsius, usually found at depths greater than 10–15 kilometres, the intra-crystalline plasticity of quartz and feldspar relieves stress by aseismic creep and earthquakes are infrequent. Hydrothermal conditions control the stability of mineral phases and hence frictional–mechanical processes associated with earthquake rupture cycles, but there are few temperature and fluid pressure data from active plate-bounding faults. Here we report results from a borehole drilled into the upper part of the Alpine Fault, which is late in its cycle of stress accumulation and expected to rupture in a magnitude 8 earthquake in the coming decades4, 5. The borehole (depth 893 metres) revealed a pore fluid pressure gradient exceeding 9 ± 1 per cent above hydrostatic levels and an average geothermal gradient of 125 ± 55 degrees Celsius per kilometre within the hanging wall of the fault. These extreme hydrothermal conditions result from rapid fault movement, which transports rock and heat from depth, and topographically driven fluid movement that concentrates heat into valleys. Shear heating may occur within the fault but is not required to explain our observations. Our data and models show that highly anomalous fluid pressure and temperature gradients in the upper part of the seismogenic zone can be created by positive feedbacks between processes of fault slip, rock fracturing and alteration, and landscape development at plate-bounding faults.
ISSN: 0028-0836

hal-01685757
https://hal.archives-ouvertes.fr/hal-01685757
DOI : 10.1038/nature22355

Éditeur(s) : HAL CCSD
Résumé : International audience
Metamorphic soles correspond to m to 500 m thick highly strained metamorphic rock units found beneath myloniticbanded peridotites at the base of large-scale ophiolites, as exemplified in Oman. Metamorphic soles aremainly composed of metabasalts deriving from the downgoing oceanic lithosphere and metamorphosed up togranulite-facies conditions by heat transfer from the mantle wedge. Pressure–temperature peak conditions areusually estimated at 1.00.2 GPa and 800100ºC. The absence of HP–LT metamorphism overprint implies thatmetamorphic soles have been formed and exhumed during subduction infancy. In this view, metamorphic soleswere strongly deformed during their accretion to the mantle wedge (corresponding, now, to the base of the ophiolite).Therefore, metamorphic soles and banded peridotites are direct witnesses of the dynamics of early subductionzones, in terms of thermal structure, fluid migration and rheology evolution across the nascent slab interface.Based on fieldwork and EBSD analyses, we present a detailed (micro–) structural study performed on samplescoming from the Sumeini window, the better-preserved cross-section of the metamorphic sole of Oman. Largedifferences are found in the deformation (CPO, grain size, aspect ratio) of clinopyroxene, amphibole and plagioclase,related to mineralogical changes linked with the distance to the peridotite contact (e.g., hardening due to theappearance of garnet and clinopyroxene).To model the incipient slab interface in laboratory, we carried out 5 hydrostatic annealing and simple-shear experimentson Griggs solid-medium apparatus. Deformation experiments were conducted at axial strain rates of 10-6s-1. Fine-grained amphibolite was synthetized by adding 1 wt.% water to a (Mid-Ocean Ridge) basalt powder asa proxy for the metamorphic sole (amphibole + plagioclase + clinopyroxene garnet assemblage). To synthetizegarnet, 2 experiments were carried out in hydrostatic conditions and with deformation at 800C with confiningpressure of 2 GPa. Another simple-shear experiment has been carried out at 800C and 1 GPa with fined-grainednatural garnet. With the aim of mimicking the early slab interface (between the metamorphic sole and bandedperidotites at the base of the ophiolite), 2 simple-shear deformation experiments with 2 layers have been carriedout at 800C and confining pressure of 1 GPa. The bottom layer was made of hydrated basalt powder and the toplayer was made of olivine.Fined-grained garnet-free amphibolite is significantly weaker than dunite but the appearance of harder mineralsin the amphibolite (garnet and clinopyroxene) has major implications on its rheological evolution. These resultsallow liking field observations of strain localization at the interface to the metamorphic sole formation
European Geosciences Union General Assembly 2016
Vienne, Austria

insu-01309394
https://hal-insu.archives-ouvertes.fr/insu-01309394

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Estimations of zenith total delays (ZTD) were obtained during postprocessing of a high-resolution (2.4 km) nonhydrostatic atmospheric model (Méso-NH). These estimations were used to determine their sensitivity with respect to formulations of atmospheric refractivity, the approximation of zenith hydrostatic delays (ZHD) deduced from ground pressure, and the contributions of hydrometeors. The factor k for the conversion of zenith wet delay (ZWD) to integrated water vapor (IWV) was examined. Méso-NH is applied here to the extreme flash flood event of 8–9 September 2002 in southeastern France. The use of the hydrostatic formulation (to infer ZHD) leads to an overestimation of up to 18 mm with respect to the vertical integration of refractivity. Delay contributions of hydrometeors simulated by the high-resolution model reached more than 70 mm (%11 kg/m 2 IWV) in the heart of the convective cells in the case of the extreme flood event. The mean variations of IWV due to the use of different conversion factors (k used to transform ZWD to IWV) are evaluated to be less than 0.3 kg/m 2. This is less than the mean underestimation of IWV by 0.6 kg/m 2 relative to the GPS-like evaluation of IWV using the hydrostatic formulation and the ground temperature. In this study we also use GPS ZTD observations to validate three different numerical simulations of this extreme flood event. The simulation with the best fit to the GPS observations is also in best agreement with the surface rainfall measurements.
ISSN: 2169-897X

hal-01417608
https://hal.archives-ouvertes.fr/hal-01417608
https://hal.archives-ouvertes.fr/hal-01417608/document
https://hal.archives-ouvertes.fr/hal-01417608/file/Brenot_JGR_2006.pdf
DOI : 10.1029/2004JD005726

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
A set of synthetic aggregates, containing mixtures of calcite and muscovite, were compacted with varying uniaxial loads ranging from 20 MPa up to 400 MPa. Their elastic properties have been measured using compressional and shear waves in confining hydrostatic pressures up to 475 MPa. Measured seismic velocities are shown to depend on 1) the ratio of calcite to muscovite, 2) the uniaxial load used during sample manufacturing, and 3) the porosity amount prior to velocity measurements. The matrix framework may also affect the seismic velocities, but this effect is not easily quantifiable. In general, measured seismic velocities decrease with increasing muscovite content and porosity. Elastic properties have been calculated based on texture measurements, which were obtained by neutron diffraction. The calculated velocities are based on the calcite and muscovite single crystal elastic tensors, their orientation distribution functions, and their modal fractions. A large discrepancy is apparent between calculated and measured velocities, where the former always overestimate the actual velocities. Shear waves display less of a difference between calculated and measured values, than do compressional waves, indicating that waves propagating by shearing are less affected by sample porosity and matrix framework. A better agreement between measured and calculated seismic velocities arises when the initial porosity is taken into account, using a differential effective medium model. Seismic anisotropy is evident from both measured and calculated velocities, and is low for samples containing pure calcite, but becomes prominent as the muscovite concentration increases. The intensity of anisotropy further depends on the uniaxial load used during sample compaction and the initial porosity.
ISSN: 0148-0227

hal-00512666
https://hal.archives-ouvertes.fr/hal-00512666
DOI : 10.1029/2009JB006523

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The aim of this study is to bring new information on water storage dynamics in karst systems from tiltmeter measurements. Newly developed long-base hydrostatic tiltmeters are installed at two sites on the Larzac plateau (France) in a karst aquifer of similar to 100 km(2) recharge area. Each site is located within a karst cave where two tilt directions are monitored. Significant reversible tilt deformation reaching amplitudes of 10(-6) to 10(-5) rad was observed at both sites following heavy precipitation. Elastic parameters were determined with an experiment in which a tiltmeter site was loaded by up to 25 t of weight at strategic locations at the ground surface. Mechanisms responsible for the observed tilt were then examined by means of finite element modeling. Deformation induced by water pressure changes in fractures is our preferred interpretation as the most plausible mechanism. Within this scope, we used the tiltmeter responses to extract time constants using lumped parameter modeling. Time constants are interpreted to be associated with the filling and emptying of fractures nearby the tiltmeters. These instruments therefore appear as useful tools to study the local dynamics of water infiltration in karst systems.
ISSN: 0043-1397

hal-00534461
https://hal.archives-ouvertes.fr/hal-00534461
DOI : 10.1029/2009WR008082

Éditeur(s) : HAL CCSD
Résumé : International audience
New inclinometers devoted to hydrological studies were set up in the Vosges Mountains (France). Two orthogonal 100-meter base hydrostatic inclinometers were installed in December 2004 as well as a hydrometeorological monitoring system for the 100-km² hydrological unit around the inclinometer. As inclinometers are very sensitive to environmental influences, this observatory is a test site to confront hydrological modelling and geodetic observations. Physical modelling to remove hydrological effects without calibrating on geodetic data is tested on these instruments. Specifically, two deformation processes are most important: fluid pressure variations in nearby hydraulically active fractures and surface loading at regional scale.
International Association of Geodesy Symposia
Perugia, Italy

hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442
https://hal.archives-ouvertes.fr/hal-00710442/document
https://hal.archives-ouvertes.fr/hal-00710442/file/2007IUGG_proceedingsIAG.pdf
DOI : 10.1007/978-3-540-85426-5_63

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
We investigate the deformation induced by water pressure variations in hydrologically active natural fractures, and recorded by tiltmeters and strainmeters. The deformation associated with a single fracture is derived using finite-element modelling (FEM). A range in fracture geometries is explored, first to highlight the sensitivity of each geometrical parameter to the deformation, and secondly to allow transfer to observation sites. Water level variations in the fracture are then derived from a hydrological model, driven by observed rainfall, and calibrated on fracture water flow measurements. The modelling results are explicitly applied to constrain the local hydrological contribution to observations with the 100-m-long hydrostatic tiltmeter installed at Sainte-Croix-aux-Mines (France). Our study shows that well-founded physical modelling of local hydrological effect allows a substantial correction of records in observatories.
ISSN: 0956-540X

hal-00708093
https://hal.archives-ouvertes.fr/hal-00708093
https://hal.archives-ouvertes.fr/hal-00708093/document
https://hal.archives-ouvertes.fr/hal-00708093/file/fracture_v72.pdf
BIBCODE : 2009GeoJI.178..667L

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Torsion experiments (inline image =3 × 10−4 s−1) were performed to investigate the large strain (γmax = 15) rheology on quartz-muscovite aggregate as analogue to pelitic rocks undergoing melting and crystallization during deformation at 300 MPa confining pressure and 750°C temperature. Microstructures reveal four distinct but gradational stages of crystal-melt interactions during deformation--(a) solid state deformation, (b) initiation and domination of partial melting, (c) simultaneous partial melting and crystallization, and (d) domination of crystallization. The microstructural stages are linked to the rheology of the deforming samples. Partial melting starts at relatively low finite shear strains (γ = 1-3) showing approximately 60% strain softening. At γ = 4-10 the partially molten bulk material shows a steady state flow at low stress. Further crystallization of new crystals at the expense of melt between γ = 10 and 15 causes weak strain hardening until the material fails by developing brittle fractures. The stress exponent (n), calculated at γ = 1, 5, and 10, increases from ∼ 3 to ∼ 43, indicating a transition from power to power law breakdown or exponential flow of the bulk system. Hydrostatic experiments for equivalent times and conditions of the torsion experiments were also conducted to evaluate the reaction kinetics and microstructures under static conditions. The new experimental data establish that partially molten rock does not flow according to a constant strain rate-dependent power law (steady state) rheology. The rheological transition from strain rate sensitive to strain rate insensitive flow is interpreted as a function of melt-crystal ratio, their mutual interactions, and the evolution of microstructures in the partially molten rock.
ISSN: 0148-0227

hal-01053709
https://hal.archives-ouvertes.fr/hal-01053709
DOI : 10.1002/2013JB010777