Éditeur(s) : Elsevier
Résumé : The family Kareniaceae is mostly known in France for recurrent blooms of Karenia mikimotoi in the Atlantic, English Channel, and Mediterranean Sea and for the unusual green discoloration in the saltwater lagoon of Diana (Corsica) caused by Karlodinium corsicum in April 1994. In terms of diversity, this taxonomic group was long overlooked owing to the difficult identification of these small unarmored dinoflagellates. In this study, thanks to the molecular characterization performed on single cells from field samples and cultures, twelve taxonomic units were assigned to the known genera Karenia, Karlodinium and Takayama, whereas one could not be affiliated to any described genus. The molecular phylogeny inferred from the D1–D2 region of the LSU rDNA showed that five of them formed a sister taxon of a known species, and could not be identified at species-level, on the basis of molecular analysis only. Among these latter taxa, one Karlodinium which was successfully cultured was investigated by studying the external morphological features (using two procedures for cells fixation), ultrastructure, pigment composition, and haemolytic activity. The results of our analyses corroborate the genetic results in favour of the erection of Karlodinium gentienii sp. nov., which possesses an internal complex system of trichocysts connected to external micro-processes particularly abundant in the epicone, and a peculiar pigment composition. In addition, preliminary assays showed a haemolytic activity.
Harmful Algae (1568-9883) (Elsevier), 2014-12 , Vol. 40 , P. 75-91

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00225/33611/32310.pdf
DOI:10.1016/j.hal.2014.10.006
http://archimer.ifremer.fr/doc/00225/33611/

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Marine ecosystems cover about 70% of the planet surface and are still an underexploited source of useful metabolites. Among microbes, filamentous fungi are captivating organisms used for the production of many chemical classes of secondary metabolites bound to be used in various fields of industrial application. The present study was focused on the collection, isolation, screening and genotyping of pigmented filamentous fungi isolated from tropical marine environments around La Réunion Island, Indian Ocean. About 150 micromycetes were revived and isolated from 14 marine samples (sediments, living corals, coral rubble, sea water and hard substrates) collected in four different locations. Forty-two colored fungal isolates belonging to 16 families, 25 genera and 31 species were further studied depending on their ability to produce pigments and thus subjected to molecular identification. From gene sequence analysis, the most frequently identified colored fungi belong to the widespread Penicillium, Talaromyces and Aspergillus genera in the family Trichocomaceae (11 species), then followed by the family Hypocreaceae (three species). This study demonstrates that marine biotopes in La Réunion Island, Indian Ocean, from coral reefs to underwater slopes of this volcanic island, shelter numerous species of micromycetes, from common or uncommon genera. This unstudied biodiversity comes along with the ability for some fungal marine inhabitants, to produce a range of pigments and hues.
ISSN: 2309-608X

hal-01657071
http://hal.univ-reunion.fr/hal-01657071
http://hal.univ-reunion.fr/hal-01657071/document
http://hal.univ-reunion.fr/hal-01657071/file/14-%20Fouillaud%20et%20al.%2C%20J.%20of%20Fungi%202017.pdf
DOI : 10.3390/jof3030036

Éditeur(s) : HAL CCSD Magnolia Press
Résumé : International audience
A new species of wrasse, Macropharyngodon pakoko, is described from the Marquesas Islands, bringing the total number of species of the genus Macropharyngodon to 12. Macropharyngodon pakoko was found at depths from 0-42 m and is endemic to the Marquesas Islands. Macropharyngodon pakoko is similar to M. meleagris, which is widely distributed from the central and western Pacific to Cocos-Keeling in the Indian Ocean, but differs genetically and in several coloration characters: males with irregularly curved black humeral blotch with incomplete iridescent blue border; inverted irregular " U "-shaped band on the cheek; a small black spot at the upper base of the pectoral fin; and background color of the body greenish with faint bluish black spots on each scale. Females lack black pigment on the chest posterior to the ventral attachment of the gill membranes; reddish black blotches on the body are widely spaced, particularly on the head where they are more reddish and half the size of those on body; caudal fin with small, bright yellow spots arranged in narrow vertical bands with pale interspaces; pelvic fins pale with three reddish yellow cross-bands; a small black spot at the upper base of the pectoral fin; and small reddish spots along the base of the anal fin. Juveniles have irregular black blotches on the body, a small black spot instead of an ocellus posteriorly on the dorsal fin and lack large black spots and ocellus on the anal fin.
ISSN: 1175-5326

Droits : http://creativecommons.org/licenses/by/
hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/file/7387-23089-2-PB.pdf
DOI : 10.11646/zootaxa.3857.3.6

Éditeur(s) : Springer
Résumé : The structure and summertime production of planktonic communities and the role of nondiatom planktonic cells were studied in coastal ponds, which are areas traditionally used for fattening and greening table-sized oysters. The abundance and biomass of nano-microplanktonic protists were determined at weekly intervals between February 1998 and February 1999 in a coastal pond without oysters in the French Atlantic coast near La Rochelle. The production of these microbiotas was determined in the summer period. The structure of plankton communities revealed the following observations: (1) microphytoplanktonic cells were mostly diatoms and dinoflagellates, (2) microzooplanktonic cells were mainly ciliates, and (3) nanoplanktonic cells were represented by pigmented (80-90% of the nanoplankton biomass) and colorless nanoflagellates. Diatoms were dominated by Naviculiineae. Dinoflagellates were dominated by Peridiniales. Oligotrichida were predominant in the ciliate community. Protist biomass levels were nine times higher from April to August (summer period 1033 mu g C L-1) than from September to March (winter period 114 mu g C L-1). Whatever the season, nanoflagellates were dominant in the water column (66 and 53% of the entire protist biomass in the summer and winter periods, respectively). Nanoflagellates represented the highest production of nano-microplanktonic communities (76% of carbon protist production) in the coastal pond in summer and showed the shortest generation time (7.1 h). Dinoflagellates came after nanoflagellates in production (19.5% of carbon protist production). Diatoms represented only a supplementary carbon resource available for higher trophic levels, whereas, until now, they were considered as the principal food of oysters in coastal ponds. Ciliates were a small source of carbon, but their growth rate was high. We suggest, first, that nanoflagellates represented the primary resource available in the pond and could constitute an important food resource for higher trophic levels, such as oysters, farmed in this type of pond. Overall, the system appeared to be more autotrophic than heterotrophic. Because inorganic nutrients are quickly exhausted in a semiclosed pond, pigmented flagellates dominated the carbon biomass, production and biomass of bacteria were high (thus, the microbial food web appeared to be active in this pond), and mixotrophy seemed to be an important trophic mode there.
Microbial Ecology (0095-3628) (Springer), 2007-05 , Vol. 53 , N. 4 , P. 537-548

Droits : 2007 Springer
http://archimer.ifremer.fr/doc/2007/publication-2641.pdf
DOI:10.1007/s00248-006-9087-z
http://archimer.ifremer.fr/doc/00000/2641/

Éditeur(s) : Station Biologique de Roscoff
Résumé : The first record of interstitial polychaetous annelids dates no more than forty years. Presently, the total number of interstitial species described is about one hundred. Up to the present, the large group of Aphroditoidea includes no interstitial representative. A few samples made by Pr Swedmark and M. Lasserre in Bermudas enable the discovery of an undescribed species of an interstitial Sigalionidae, Pholoe swedmarki Sp. n., together with two other interstitial species of Pisionidae and Syllidae, new to the western tropical atlantic. From a morphological point of view, the comparison of P. swedmarki sp. n. with the other species of the genus reveals some adaptations to the interstitial life: reduction of the body size, reduction or, at the contrary, enlargement of some appendages of the anterior part, lack of pigmentation. From the biological point of view, P. swedmarki sp. n. displays a remarkable group of characteristics : extreme reduction of the eggs numbers, extension of the reproductive period, pregnancy of the embryos and juveniles up to a very late ontogenetical stage. The hypothesis of an intra-elytral pregnancy, involving an internal fertilization, is discussed. By its morphology and biology, P. swedmarki sp. n. forms the first undeniable example of adaptation to the interstitial life among the Aphroditoidea. [NOT CONTROLLED OCR]
La découverte des premières Annélides Polychètes interstitielles remonte à peine à une quarantaine d'années. A l'heure actuelle, le nombre total d'espèces interstitielles décrites est de l'ordre d'une centaine. Jusqu'à présent, le vaste groupe des Aphroditoidea ne comprenait aucun représentant interstitiel. Quelques récoltes effectuées aux Bermudes par le Pr Swedmark et M. Lasserre ont permis de découvrir une espèce inédite de Sigalionidae interstitiel, Pholoe swedmarki sp. n., en compagnie de deux autres espèces de Pisionidae et de Syllidae interstitielles encore inconnues dans l'Atlantique tropical Ouest. Sur le plan morphologique, la comparaison de P. swedmarki sp. n. avec les autres espèces du genre met en évidence un certain nombre d'adaptations à la vie interstitielle : réduction de la taille du corps, réduction ou, au contraire, développement de certains appendices de la région antérieure, absence de pigmentation. Du point de vue biologique, P. swedmarki sp. n. présente un ensemble d'adaptations remarquables : réduction extrême du nombre d'oeufs, allongement de la période de reproduction, gestation des embryons et des jeunes vers jusqu'à un stade ontogénétique très avancé. L'hypothèse d'une gestation intra-élytrale, impliquant une fécondation interne, est avancée. Par sa morphologie et sa biologie, P. swedmarki sp. n. constitue le premier exemple incontestable d'adaptation à la vie interstitielle chez un Aphroditoidea. [OCR NON CONTRÔLE]
Cahiers de Biologie Marine (Station Biologique de Roscoff), 1974 , Vol. 16 , N. 5 , P. 671-683

Droits : Station Biologique de Roscoff
http://archimer.ifremer.fr/doc/1974/publication-5462.pdf
http://archimer.ifremer.fr/doc/00000/5462/

Éditeur(s) : HAL CCSD Microbiology Society
Résumé : International audience
An actinobacterial strain, designated ViU22(T), was isolated from a natural uranium-rich soil and was studied using a polyphasic approach. Cells formed orange-pigmented colonies, were rod-shaped, Gram-positive (non-staining method), non-motile and non-spore-forming. This organism grew in 0-4.5 % (w/v) NaCl and at 15-37 °C, with optimal growth occurring in 0.5 % (w/v) NaCl and at 30 °C. Comparative 16S rRNA gene sequence analysis revealed that the strain ViU22(T) belonged to the genus Microbacterium. It exhibited highest 16S rRNA gene sequence similarity with the type strains of Microbacterium testaceum (98.14 %) and Microbacterium binotii (98.02 %). The DNA-DNA relatedness of strains ViU22(T) with the most closely related type strains Microbacterium testaceum and Microbacterium binotii DSM 19164(T) was 20.10 % (± 0.70) and 28.05 % (± 0.35), respectively. Strain ViU22(T) possessed a type B2β peptidoglycan with partial substitution of glutamic acid by 3-hydroxy glutamic acid. The major menaquinones were MK-11 and MK-12. Major polar lipids detected in the strain ViU22(T) were diphosphatidylglycerol, phosphatidylglycerol, an unknown phospholipid and unknown glycolipids. The predominant fatty acids were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0, a pattern reported for other Microbacterium species. The major cell-wall sugars were galactose, xylose and mannose and the DNA G+C content was 71 mol%. Together, the DNA-DNA hybridization results and the differentiating phenotypic characteristics, showed that strain ViU22(T) should be classified as the type strain of a novel species within the genus Microbacterium, for which the name Microbacterium lemovicicum sp. nov. is proposed. The type strain is ViU22(T) ( = ATCC BAA-2396(T) = CCUG 62198(T) = DSM 25044(T)).
ISSN: 1466-5026

hal-01561095
https://hal-amu.archives-ouvertes.fr/hal-01561095
PUBMED : 23264499
DOI : 10.1099/ijs.0.048454-0

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Necroptosis is a programmed cell death pathway that has been shown to be of central pathophysiological relevance in multiple disorders (hepatitis, brain and cardiac ischemia, pancreatitis, viral infection and inflammatory diseases). Necroptosis is driven by two serine threonine kinases, RIPK1 (Receptor Interacting Protein Kinase 1) and RIPK3, and a pseudo-kinase MLKL (Mixed Lineage Kinase domain-Like) associated in a multi-protein complex called necrosome. In order to find new inhibitors for use in human therapy, a chemical library containing highly diverse chemical structures was screened using a cell-based assay. The compound 6E11, a natural product derivative, was characterized as a positive hit. Interestingly, this flavanone compound: inhibits necroptosis induced by death receptors ligands TNF-α (Tumor Necrosis Factor) or TRAIL (TNF-Related Apoptosis-Inducing Ligand); is an extremely selective inhibitor, among kinases, of human RIPK1 enzymatic activity with a nM Kd; has a non-ATP competitive mode of action and a novel putative binding site; is weakly cytotoxic towards human primary blood leukocytes or retinal pigment epithelial cells at effective concentrations; protects human aortic endothelial cells (HAEC) from cold hypoxia/reoxygenation injury more effectively than necrostatin-1 (Nec-1) and Nec-1s. Altogether, these data demonstrate that 6E11 is a novel potent small molecular inhibitor of RIPK1-driven necroptosis.
ISSN: 2045-2322

hal-01616456
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616456
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616456/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616456/file/s41598-017-12788-4.pdf
DOI : 10.1038/s41598-017-12788-4

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Color polymorphism in the nacre of pteriomorphian bivalves is of great interest for the pearl culture industry. The nacreous layer of the Polynesian black-lipped pearl oyster Pinctada margaritifera exhibits a large array of color variation among individuals including reflections of blue, green, yellow and pink in all possible gradients. Although the heritability of nacre color variation patterns has been demonstrated by experimental crossing, little isknown about the genes involved in these patterns. In this study, we identify a set of genes differentially expressed among extreme color phenotypes of P. margaritifera using a suppressive and subtractive hybridization (SSH) method comparing black phenotypes with full and half albino individuals.Results: Out of the 358 and 346 expressed sequence tags (ESTs) obtained by conducting two SSH libraries respectively, the expression patterns of 37 genes were tested with a real-time quantitative PCR (RT-qPCR) approach by pooling five individuals of each phenotype. The expression of 11 genes was subsequently estimated for each individual in order to detect inter-individual variation. Our results suggest that the color of the nacre is partiallyunder the influence of genes involved in the biomineralization of the calcitic layer. A few genes involved in the formation of the aragonite tablets of the nacre layer and in the biosynthesis chain of melanin also showed differential expression patterns. Finally, high variability in gene expression levels were observed within the black phenotypes.Conclusions: Our results revealed that three main genetic processes were involved in color polymorphisms: the biomineralization of the nacreous and calcitic layers and the synthesis of pigments such as melanin, suggesting that color polymorphism takes place at different levels in the shell structure. The high variability of gene expression found within black phenotypes suggests that the present work should serve as a basis for future studies exploringmore thoroughly the expression patterns of candidate genes within black phenotypes with different dominant iridescent colors.
ISSN: 1471-2164

hal-01260141
https://hal.archives-ouvertes.fr/hal-01260141
https://hal.archives-ouvertes.fr/hal-01260141/document
https://hal.archives-ouvertes.fr/hal-01260141/file/Lemer-2015-BMCGenom-Identification.pdf
DOI : 10.1186/s12864-015-1776-x

Éditeur(s) : HAL CCSD
Résumé : International audience
Fucoxanthin is a carotenoid present in brown micro-and macro algae, that induces apoptosis or autophagy in cancer cells grown in vitro. In vivo studies confirmed its interest as a natural anticancer compound, as it exerts antitumoral, antimetastatic and antiangiogenic activities in animal models. Studies focused on the pharmacology of fucoxanthin in cancer cells and tumors have revealed that it affects a wide panel of cellular, molecular and tissular processes, suggesting that its biological activity may be related in part to a nonspecific integration in cell membranes, and possible interaction with lipid rafts. Thus, preliminary data confirming this interaction of fucoxanthin with lipid rafts were obtained in mast cells and hepatoma WIF-B9 cells. We here discuss this hypothesis, in view of the critical function of lipid rafts in cancer cell survival, invasivity and communication with the tumoral microenvironment.
ISSN: 2141-2294

hal-01391001
https://hal.archives-ouvertes.fr/hal-01391001
https://hal.archives-ouvertes.fr/hal-01391001/document
https://hal.archives-ouvertes.fr/hal-01391001/file/could-fucoxanthin-interaction-with-lipid-rafts-mediate-its-cytotoxicity-incancer-cells-.pdf
DOI : 10.4172/jomr.1000144

Résumé : Spiny lobsters are an important component of the coastal fisheries around the Martinique island. This study aimed to assess the contamination by kepone of the two main species Panulirus argus and P. guttatus in the main fishery area laying along the eastern coast of Martinique. The objectives of the study were to describe the distribution of the spiny lobster contamination in the area, to explore possible relationships with some biological parameters such as individual size, sex and colour of tegument, as well as characterize difference of kepone concentration between the muscle and soft flesh of the head, in view of helping the definition of further fishery management measures. The analyses were done from chemical analyses of 125 samples of spiny lobsters gathered from 2008 to 2010 all around the island, and from a specific set of 200 new observations from a specific survey carried out in 2011 in the study area. For both species, the results show a diffusion of the contamination all over the coral shoals, close to contaminated catchment basins, with a strong decrease just outside these areas. For the Caribbean spiny lobster, a strong relationship between kepone concentration and individual size was identified, and less for the Spotted spiny lobster. For the two species, the concentration of kepone found in soft flesh of the head was more than twice as in the muscle. Finally, the difference of contamination between the two species appeared strongly linked with their biology.
La langouste blanche Panulirus argus et la langouste brésilienne P. guttatus représentent environ 25 % du chiffre d’affaires des pêcheurs professionnels de Martinique. Une part très importante des captures de ces espèces proviennent du platier continental de la zone centre-atlantique de l’île. L’étude réalisée en 2011 visait à approfondir les connaissances sur la distribution de la contamination par la chlordécone des langoustes dans la zone centre- atlantique de la Martinique, d’explorer d’éventuelles relations entre cette contamination et des paramètres biologiques des individus comme la taille, le sexe et leur pigmentation tégumentaire, et d’analyser la différence de contamination entre la queue et les chairs molles du céphalothorax, en vue d’aider à la définition de mesures de réglementation de la pêche dans ce secteur. L’étude s’appuie sur un ensemble de 125 échantillons rassemblés de 2008 à 2010 pour les deux espèces autour de la Martinique, complétés par 200 échantillons constitués pour la présente étude dans la zone centre-atlantique en 2011. Le rapport est précédé d’un rappel d’éléments sur la biologie et sur l’état de la pêche des langoustes en Martinique. Pour les deux espèces, l’étude met en évidence une extension de la contamination à l’ensemble du platier corallien au pied des bassins versants contaminés, puis une nette diminution au-delà. Pour la langouste blanche, cette contamination est en relation avec la taille des individus, en liaison avec leur plongée progressive vers le large. Cette relation avec la taille est moins marquée pour la langouste brésilienne, espèce beaucoup plus inféodée aux eaux littorales. Pour les deux espèces, les chairs molles du céphalothorax apparaissent plus de deux fois plus contaminées que le muscle caudal. Les différences de contamination observées entre langouste blanche et la langouste brésilienne sont cohérentes avec les connaissances sur la biologie de chaque espèce.

Droits : Délégation Antilles
http://archimer.ifremer.fr/doc/00088/19971/17638.pdf
http://archimer.ifremer.fr/doc/00088/19971/

Éditeur(s) : HAL CCSD
Résumé : International audience
Some of the immunologic mechanisms involved in malaria physiopathology remain unclear. In animals, the spleen seems to play a key role in protecting the host against malaria. However, little is known about the effect of spleen dysfunction on human malaria. We report two severe cases of Plasmodium falciparum infection with unusual clinical and parasitologic features in two splenectomized men living in French Guiana. The peripheral blood of these cases showed hyperparasitemia, with a high proportion of mature parasites and leukocytes with malaria pigment. Despite appropriate treatment and adequate absorption, hyperparasitemia persisted. Parasite clearance was delayed and one patient died. Only the patient who died had the merozoite surface protein 1 allele B-K1 and the varD gene genotype, which is considered to be a probable parasite virulence factor. These uncommon cases differ from most of those described in the literature, illustrating the complexity of the mechanisms underlying the protective function of the spleen in human malaria.
The American journal of tropical medicine and hygiene

pasteur-00590993
https://hal-riip.archives-ouvertes.fr/pasteur-00590993
PUBMED : 15381808