Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The capacity of testicular somatic cells to promote and sustain germ cell differentiation is largely regulated by sexual steroids and notably androgens. In fish species the importance of androgens is emphasized by their ability to induce sex reversal of the developing fries and to trigger spermatogenesis. Here we studied the influence of androgens on testicular gene expression in trout testis using microarrays. Following treatment of immature males with physiological doses of testosterone or 11-ketotestosterone, 418 genes that exhibit changes in expression were identified. Interestingly, the activity of testosterone appeared stronger than that of 11-ketotestosterone. Expression profiles of responsive genes throughout testis development and in isolated germ cells confirmed androgens to mainly affect gene expression in somatic cells. Furthermore, specific clusters of genes that exhibit regulation coincidently with changes in the natural circulating levels of androgens during the reproductive cycle were highlighted, reinforcing the physiological significance of these data. Among somatic genes, a phylogenetic footprinting study identified putative androgen response elements within the proximal promoter regions of 42 potential direct androgen target genes. Finally, androgens were also found to alter the germ line towards meiotic expression profiles, supporting the hypothesis of a role for the somatic responsive genes in driving germ cell fate. This study significantly increases our understanding of molecular pathways regulated by androgens in vertebrates. The highly cyclic testicular development in trout together with functions associated with regulated genes reveal potential mechanisms for androgen actions in tubule formation, steroid production, germ cell development and sperm secretion.
ISSN: 1932-6203

inserm-00825763
http://www.hal.inserm.fr/inserm-00825763
http://www.hal.inserm.fr/inserm-00825763/document
http://www.hal.inserm.fr/inserm-00825763/file/Rolland_et_al.pdf
DOI : 10.1371/journal.pone.0053302

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Introduction: Most studies on nematode-malaria interactions were conducted outside of the Americas. The objective of the present study was thus to study the relation between malaria and nematodes in a cohort of children in an Amazonian village. Methods: Odds ratios for intestinal nematode infections as an explanatory variable to malaria resistant vs. malaria sensitive were computed. Results: Ascaris lumbricoides was significantly more frequent in the ‘resistant’ malaria group than in the ‘sensitive’ one. Conclusions: Despite its low statistical power, the present results find that Ascaris was associated with less malaria, as observed by a number of studies.
ISSN: 0142-6338

inserm-01410100
http://www.hal.inserm.fr/inserm-01410100
http://www.hal.inserm.fr/inserm-01410100/document
http://www.hal.inserm.fr/inserm-01410100/file/worms%20malaria%20camopi%20j%20trop%20pediatrics.pdf
http://www.hal.inserm.fr/inserm-01410100/file/GI%20nematodes%20tab%20aurelia%29.pdf

Éditeur(s) : HAL CCSD National Academy of Sciences
Résumé : International audience
Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of similar to 12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 size-fractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.
ISSN: 0027-8424

hal-01545320
https://hal.archives-ouvertes.fr/hal-01545320
DOI : 10.1073/pnas.1509523113

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In Western Mediterranean, the Rif belt in Morocco is part of the Gibraltar Arc built during the Tertiary in the framework of Eurasia-Africa convergence. The structural and metamorphic evolution of the internal units of this belt as well as their timing, crucial to constrain the geodynamic evolution of the Alboran Sea, is still largely debated.Our study on the Ceuta Peninsula (Northern Rif) provides new structural, petrological and geochronological data (U-Th-Pb, Ar-Ar), which allow to precise the tectono-metamorphic evolution of the Lower Sebtides metamorphic units with:(1) a syn-metamorphic thrusting event developed under granulite facies conditions (7–10 kbar and 780–820 °C). A major thrust zone, the Ceuta Shear Zone, drove the emplacement of metapelites and peridotitic lenses from the Ceuta Upper Unit over the orthogneisses of the Monte Hacho Lower Unit. This compressional event ended during the Upper Oligocene.(2) an extensional event developed at the boundary between amphibolite and greenschist facies conditions (400–550 °C and 1–3 kbar). During this event, the Ceuta Shear Zone has been reactivated as a normal fault. Normal ductile shear zones contributed to the final exhumation of the metamorphic units during the Early Miocene.We propose that the compressional event is related to the formation of an orogenic wedge located in the upper plate, in a backward position, of the subduction zone driving the geodynamic evolution of the Alboran domain. In this context, the episode of lithospheric thinning could be related to the opening of the Alboran basin in a back-arc position.Furthermore, unlike the previous models proposed for the Rif belt, the tectonic coupling between mantle peridotites and crustal metamorphic rocks occurred in Ceuta Peninsula at a depth of 20–30 km under high temperature conditions, before the extensional event, and thus cannot be related to the back-arc extension.
ISSN: 0040-1951

insu-01682810
https://hal-insu.archives-ouvertes.fr/insu-01682810
DOI : 10.1016/j.tecto.2017.11.028

Éditeur(s) : HAL CCSD IWA Publishing
Résumé : International audience
Anti-cancer drugs are an important class of pharmaceutical products. Methotrexate (MTX) is a folic acid antagonist used in high doses as antimetabolite in anti-cancer treatment as well as in low doses for the treatment of rheumatoid arthritis and adults' psoriasis. In the past, several anti-cancer drugs, including methotrexate, have been found in the environment. Their presence in water, especially if used for the production of drinking water, is even in low concentrations of particular interest, due to the risk to retrieve them in the consumed water and their high activity and grave effects. But prior to usage as drinking water, raw waters are treated and chlorination is a common practice in several countries. As such a treatment can lead to the formation of organochlorine in water, the study of the fate of MTX during chlorination in a batch trial was carried out. The reaction was monitored by dissolved organic carbon (DOC) and by fluorescence and UV spectroscopy. Investigation of by-products formed was done with liquid chromatography/mass spectrometry (LC/MS). Under the given experimental conditions, Methotrexate was eliminated rapidly (t1/2 around 21 min). However, DOC elimination was incomplete. Monitoring with LC-MS showed the formation of a monochlorinated transformation product of MTX. In silico analysis of the proposed transformation products for different carcinogenic, mutagenic and genotoxic endpoints with different software platforms provided no clear evidence that the possible transformation products after chlorination might be more toxic than the parent compound. However, since a number of alerts is altered after chlorination, it cannot be excluded that the toxicity of these transformation products might be modulated compared with the parent compound.
ISSN: 0043-1354

hal-01016617
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01016617
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01016617/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01016617/file/Monitoringsur methotrexate_final.pdf
DOI : 10.1016/j.watres.2014.03.008

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Tree mortality in tropical forests is a complex ecological process for which modelling approaches need to be improved to better understand, and then predict, the evolution of tree mortality in response to global change. The mortality model introduced here computes an individual probability of dying for each tree in a community. The mortality model uses the ontogenetic stage of the tree because youngest and oldest trees are more likely to die. Functional traits are integrated as proxies of the ecological strategies of the trees to permit generalization among all species in the community. Data used to parametrize the model were collected at Paracou study site, a tropical rain forest in French Guiana, where 20,408 trees have been censused for 18 years. A Bayesian framework was used to select useful covariates and to estimate the model parameters. This framework was developed to deal with sources of uncertainty, including the complexity of the mortality process itself and the field data, especially historical data for which taxonomic determinations were uncertain. Uncertainty about the functional traits was also considered, to maximize the information they contain. Four functional traits were strong predictors of tree mortality: wood density, maximum height, laminar toughness and stem and branch orientation, which together distinguished the light-demanding, fast-growing trees from slow-growing trees with lower mortality rates. Our modelling approach formalizes a complex ecological problem and offers a relevant mathematical framework for tropical ecologists to process similar uncertain data at the community level.
ISSN: 1932-6203

hal-01190561
https://hal.archives-ouvertes.fr/hal-01190561
PRODINRA : 208582
PUBMED : 23675500
DOI : 10.1371/journal.pone.0063678

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
: In non-mammalian vertebrates, serotonin (5-HT)-producing neurons exist in the paraventricular organ (PVO), a diencephalic structure containing cerebrospinal fluid (CSF)-contacting neurons exhibiting 5-HT or dopamine (DA) immunoreactivity. Because the brain of the adult teleost is known for its neurogenic activity supported, for a large part, by radial glial progenitors, this study addresses the origin of newborn 5-HT neurons in the hypothalamus of adult zebrafish. In this species, the PVO exhibits numerous radial glial cells (RGCs) whose somata are located at a certain distance from the ventricle. To study relationships between RGCs and 5-HT CSF-contacting neurons, we performed 5-HT immunohistochemistry in transgenic tg(cyp19a1b-GFP) zebrafish in which RGCs are labelled with GFP under the control of the cyp19a1b promoter. We show that the somata of the 5-HT neurons are located closer to the ventricle than those of RGCs. RGCs extend towards the ventricle cytoplasmic processes that form a continuous barrier along the ventricular surface. In turn, 5-HT neurons contact the CSF via processes that cross this barrier through small pores. Further experiments using proliferating cell nuclear antigen or 5-bromo-2'-deoxyuridine indicate that RGCs proliferate and give birth to 5-HT neurons migrating centripetally instead of centrifugally as in other brain regions. Furthermore, treatment of adult zebrafish with tryptophan hydroxylase inhibitor causes a significant decrease in the number of proliferating cells in the PVO, but not in the mediobasal hypothalamus. These data point to the PVO as an intriguing region in which 5-HT appears to promote genesis of 5-HT neurons that accumulate along the brain ventricles and contact the CSF.
ISSN: 0953-816X

inserm-00866212
http://www.hal.inserm.fr/inserm-00866212
DOI : 10.1111/ejn.12348
PUBMED : 23981075

Éditeur(s) : HAL CCSD Seismological Society of America
Résumé : International audience
Abstract The continuous record of large surface-rupturing earthquakes along the Dead Sea fault brings unprecedented insights for paleoseismic and archaeoseismic research. In most recent studies, paleoseismic trenching documents the late Holocene faulting activity, while tectonic geomorphology addresses the long-term behavior (>10 ka), with a tendency to smooth the effect of individual earthquake rupture events (Mw >7). Here, we combine historical, archaeological, and paleoseismic investigations to build a consolidated catalog of destructive surface-rupturing earthquakes for the last 14 ka along the left-lateral Jordan Valley fault segment. The 120- km-long fault segment limited to the north and the south by major pull-apart basins (the Hula and the Dead Sea, respectively) is mapped in detail and shows five subsegments with narrow stepovers (width < 3 km). We conducted quantitative geomorphology along the fault, measured more than 20 offset drainages, excavated four trenches at two sites, and investigated archaeological sites with seismic damage in the Jordan Valley. Our results in paleoseismic trenching with 28 radiocarbon datings and the archaeoseismology at Tell Saydiyeh, supplemented with a rich historical seismic record, document 12 surface-rupturing events along the fault segment with a mean interval of ∼1160 yr and an average 5 mm=yr slip rate for the last 25 ka. The most complete part of the catalog indicates recurrence intervals that vary from 280 yr to 1500 yr, with a median value of 790 yr, and suggests an episodic behavior for the Jordan Valley fault. Our study allows a better constraint of the seismic cycle and related short-term variations (late Holocene) versus long-term behavior (Holocene and late Pleistocene) of a major continental transform fault.
ISSN: 0037-1106

hal-00747401
https://hal.archives-ouvertes.fr/hal-00747401
DOI : 10.1785/0120100097

Éditeur(s) : HAL CCSD
Résumé : The Neogene geodynamics evolution of the south-Alboran realm in western Mediterranean has been clarified, based on sedimentological and chronostratigraphical studies. This work focuses on three main themes of research, the first is to establish the moments for the opening and closing of the North Rifian Corridor by studying two Neogene basins of the southern edge of the Alboran sea. The second, aims to understand the behavior of these two basins face a major event in the history of the Mediterranean: The Messinian Salinity Crisis. Finally, the third theme aims to understand the modalities Post-MSC reflooding in the southern part of the Alboran realm.The late Miocene evolution of the North Rifian Corridor is clarified on the basis of chronostratigraphic studies of the Neogene Boudinar and Arbaa Taourirt basins (northeastern Morocco). The marine sediments deposited in the Boudinar basin between the early Tortonian and the late early Messinian (10 Ma to 6.1 Ma) and in the late Tortonian-earliest Messinian interval in the Arbaa Taourirt basin. Palaeoenvironmental data record a major drowning in association with extensive tectonics in the Boudinar basin during the early Messinian at ~7.2 Ma. At the same time, prograding conglomerates and sandstones developed over the late Tortonian marls in the Arbaa Taourirt basin. During the late-early Messinian, a shallowing trend occurred in the Boudinar basin. Thus, the North Rifian Corridor opened at ~7.2 Ma ensuring Atlantic-Mediterranean connections, then was progressively restricted during the late-early Messinian and totally closed at ~6.1 Ma. New sedimentological and paleontological studies of the late Messinian-early Pliocene deposits in the Boudinar basin provide new information on the Messinian Salinity Crisis (« MSC ») and the Zanclean reflooding in the Alboran sea. The Messinian erosional surface « MES » is of late Messinian age and was emplaced in subaerial settings. It is polygenic, its original geometry is locally preserved and was re-shaped by the Pliocene transgressive surface. Above the « MES », the Boudinar basin infill is characterized by a wide variety of facies from continental settings to lower offshore conditions. Two major sets are recognized: a latest Messinian-Zanclean set that constitutes a transgressive-regressive megasequence interrupted at the top by a tectonic unconformity, and an Plio-Quaternary regressive set. During the late Messinian Zanclean interval, four successive depositional models were documented. They record major changes in palaeoflow and paleogeography related to base-level fluctuations. No Gilbert-type delta has ben identified at Boudinar. the beginning of base-level rise is marked by normal regressions and by the formation of several lacs and fan-delta complexes on the margins of the basin in the late Messinian and befor the marine reefloding in the early Zanclean. The marine reflooding of the basin appears later, with a transgressive surface of ravinment and a thick package of transgressive deposits. These transgressive deposits onlap over all previous deposits. The major part of the basin infill did not issue from an inner landward position (south of the basin) but from the northwestern side of the basin, i.e. near the Mediterranean. Sediments were subsequently reworked by storms and transported by longshore-drift towards the south. a maximum flooding surface is found several tens of metres above the « MES ». This fiding is consistent with a progressive and not a catastrophic early Zanclean flooding of the westernMediterranean after the Mediterranean base-level fall.
Sur la base d’études sédimentologiques et chronostratigraphiques dans les bassins de Boudinar et d’Arbaa Taourirt (Rif oriental, Maroc), l’évolution géodynamique néogène du domaine sud-Alboran en Méditerranée occidentale a été clarifiée. Ce travail est axé sur trois grandes thématiques de recherche. La première vise à l’établissement d’un cadre chronostratigraphique pour l’ouverture et la fermeture du Couloir Nord Rifain, par l’étude de deux bassins nèogènes de la bordure sud de la mer d’Alboran. La deuxième, vise à comprendre le comportement de ces deux bassins face à un événement majeur de l’histoire de la Mediterranée : la Crise de salinité messinienne. Finalement, la troisième vise à comprendre les modalités de remise en eau de la Méditerranée après la Crise : le reenoiement pliocène. L'évolution du Couloir Nord Rifain au Miocène supérieur est clarifiée sur la base des études chronostratigraphiques des bassins néogènes de Boudinar et d'Arbaa Taourirt (Maroc Nord oriental). Les sédiments marins miocènes se sont déposés entre le Tortonien inférieur et le Messinien inférieur (10 à 6.1 Ma) dans le bassin de Boudinar et entre le Tortonien supérieur et le Messinien inférieur dans le bassin d'Arbaa Taourirt. Les données paléoenvironnementales enregistrent un ennoyage important du bassin de Boudinar en relation avec une tectonique extensive pendant le Messinien inférieur (~7.2 Ma). En même temps, des conglomérats et de grès progradants se sont développés au-dessus des marnes tortoniennes dans le bassin d’Arbaa Taourirt. Le bassin de Boudinar a subi un désapprofondissement au Messinien inférieur. Ces résultats indiquent que le Couloir Nord Rifain s’est ouvert à ~7.2 Ma assurant les communications entre l’Atlantique et la Méditerranée, puis a subi une restriction progressive pendant le Messinien inférieur avant d’être totalement fermé à ~6.1 Ma.De nouvelles études sédimentologiques et paléontologiques des dépôts Messinien supérieur-Pliocène inférieur dans le bassin de Boudinar fournissent des informations sur la Crise de salinité messinienne (« MSC ») et le réennoiement zancléen dans la Mer d'Alboran. L’un des marqueurs majeurs de la Crise est identifié : la surface d’érosion messinienne « MES ». Elle est d'âge Messinien supérieur et a été mise en place dans des conditions subaériennes. Sa géométrie originale n’est préservée que localement et a été remodelée par la surface transgressive du Pliocène inférieur. Au dessus de la « MES » le remplissage sédimentaire du bassin de Boudinar est caractérisé par une grande variété de faciès allant des conditions de dépôts continentales jusqu’à des conditions d’offshore inférieur. Deux ensembles majeurs sont reconnus : un ensemble messinien terminal-zancléen qui constitue une mégaséquence transgressive-regressive, interrompue au sommet par une discordance tectonique, et un ensemble plio-quaternaire regressif. Durant l’intervalle Messinien terminal-Zancléen, quatre modèles de dépôts successifs ont été documentés enregistrant des changements majeurs de paléocourants et de paléogéographies, liés aux fluctuations de niveau de base. Nous n’avons pas identifié de Gilbert delta à Boudinar. La remontée du niveau de base est marquée par une régression normale et par le développement des lacs et de complexes de fan-deltas sur les marges du bassin pendant le Messinien supérieur, avant l’inondation marine au Zancléen basal. Le réennoiement marin du bassin apparait plus tard avec une surface de transgression ravinante et par d’épais dépôts transgressifs, en onlap sur tous les dépôts précédents. La majeure partie du remplissage sédimentaire du bassin n’est pas reçue des reliefs de la bordure sud du bassin, mais du côté Nord-Ouset au bord de la Méditerranée. Les sédiments sont alors remaniés par les tempêtes et transportés vers le sud par la dérive littorale. Une surface d’inondation maximale a été identifiée à plusieurs dizaines de mètres au-dessus de la « MES ». Ceci suggère un ennoiement progressif et non catastrophique, après la chute du niveau de base méditerranéen.
https://tel.archives-ouvertes.fr/tel-01473572

Droits : http://hal.archives-ouvertes.fr/licences/copyright/
tel-01473572
https://tel.archives-ouvertes.fr/tel-01473572
https://tel.archives-ouvertes.fr/tel-01473572/document
https://tel.archives-ouvertes.fr/tel-01473572/file/Th%C3%A8se-achalhi.pdf

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : The fixation of carbon in tropical forests mainly occurs through the production of wood and leaves, both being the principal components of net primary production. Currently field and satellite observations are independently used to describe the forest carbon cycle, but the link between satellite-derived forest phenology and field-derived forest productivity remains opaque. We used a unique combination of a MODIS enhanced vegetation index (EVI) dataset, a wood production model based on climate data and direct litterfall observations at an intra-annual timescale in order to question the synchronism of leaf and wood production in tropical forests. Even though leaf and wood biomass fluxes had the same range (respectively 2.4 +/- 1.4 and 2.2 +/- 0.4 Mg C ha(-1) yr(-1)), they occurred separately in time. EVI increased with leaf renewal at the beginning of the dry season, when solar irradiance was at its maximum. At this time, wood production stopped. At the onset of the rainy season, when new leaves were fully mature and water available again, wood production quickly increased to reach its maximum in less than a month, reflecting a change in carbon allocation from short-lived pools (leaves) to long-lived pools (wood). The time lag between peaks of EVI and wood production (109 days) revealed a substantial decoupling between the leaf renewal assumed to be driven by irradiance and the water-driven wood production. Our work is a first attempt to link EVI data, wood production and leaf phenology at a seasonal timescale in a tropical evergreen rainforest and pave the way to develop more sophisticated global carbon cycle models in tropical forests.
ISSN: 1726-4170

hal-01268497
https://hal.archives-ouvertes.fr/hal-01268497
DOI : 10.5194/bg-10-7307-2013
PRODINRA : 256018

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Climate models for the coming century predict rainfall reduction in the Amazonian region, including change in water availability for tropical rainforests. Here, we test the extent to which climate variables related to water regime, temperature and irradiance shape the growth trajectories of neotropical trees. . We developed a diameter growth model explicitly designed to work with asynchronous climate and growth data. Growth trajectories of 205 individual trees from 54 neotropical species censused every 2 months over a 4-year period were used to rank 9 climate variables and find the best predictive model. . About 9% of the individual variation in tree growth was imputable to the seasonal variation of climate. Relative extractable water was the main predictor and alone explained more than 60% of the climate effect on tree growth, i.e. 5.4% of the individual variation in tree growth. Furthermore, the global annual tree growth was more dependent on the diameter increment at the onset of the rain season than on the duration of dry season. . The best predictive model included 3 climate variables: relative extractable water, minimum temperature and irradiance. The root mean squared error of prediction (0.035 mm.d(-1)) was slightly above the mean value of the growth (0.026 mm.d(-1)). . Amongst climate variables, we highlight the predominant role of water availability in determining seasonal variation in tree growth of neotropical forest trees and the need to include these relationships in forest simulators to test, in silico, the impact of different climate scenarios on the future dynamics of the rainforest.
ISSN: 1932-6203

hal-01268350
https://hal.archives-ouvertes.fr/hal-01268350
DOI : 10.1371/journal.pone.0034074
PRODINRA : 215438
PUBMED : 22506012

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The development of inflammatory granulomas around infected Kupffer cells is necessary for hepatic parasite clearance during visceral leishmaniasis. Invariant NKT (iNKT) cells are predominant T cells in the mouse liver and can synthesize large quantities of IL-4 and IFN-γ, two cytokines involved in granuloma formation. This study analyzed the role of iNKT cells in the hepatic immune response during Leishmania donovani infection, using a murine model of wild-type (WT) and iNKT cell-deficient (Jα18⁻/⁻) C57BL/6 mice sacrificed 15, 30 or 60 days post-infection. We recorded hepatic parasite loads, cytokine expression, and analyzed granulomatous response by immunohistochemistry and hepatic immune cell infiltration by flow cytometry. Whereas WT animals rapidly controlled the infection and developed an inflammatory response associated with a massive influx of iNKT cells observed by flow cytometry, Jα18⁻/⁻ mice had significantly higher parasitic loads on all time points. This lack of control of parasite burden was associated with a delay in granuloma maturation (28.1% of large granulomas at day 60 versus 50.7% in WT). Cytokine transcriptome analysis showed that mRNA of 90/101 genes encoding chemokines, cytokines and their receptors, was underexpressed in Jα18⁻/⁻ mice. Detection of IL-4 and TNF-α by ELISA in liver extracts was also significantly lower in Jα18⁻/⁻ mice. Consistent with flow cytometry analysis, cytokinome profile in WT mice showed a bias of expression towards T cell-chemoattractant chemokines on D15, and displayed a switch towards expression of granulocytes and/or monocytes -chemoattractant chemokines on D60. In Jα18⁻/⁻ mice, the significantly lower expression of CXCL5, MIP-2 and CCL2 mRNA was correlated with a defect in myeloperoxidase positive-cell attraction observed by immunohistochemistry and with a lower granulocyte and monocyte infiltration in the liver, as shown by flow cytometry. These data indicate that iNKT cells play a role in early and sustained pro-inflammatory cytokine response warranting efficient organization of hepatic granulomas and parasite clearance.
ISSN: 1932-6203

hal-00696897
https://hal.archives-ouvertes.fr/hal-00696897
https://hal.archives-ouvertes.fr/hal-00696897/document
https://hal.archives-ouvertes.fr/hal-00696897/file/Invariant_NKT_Cells_Drive-accepted.pdf
DOI : 10.1371/journal.pone.0033413

Éditeur(s) : HAL CCSD American Society for Biochemistry and Molecular Biology
Résumé : International audience
Chronic low grade inflammation is closely linked to obesity-associated insulin resistance. To examine how administration of the anti-inflammatory compound indomethacin, a general cyclooxygenase inhibitor, affected obesity development and insulin sensitivity, we fed obesity-prone male C57BL/6J mice a high fat/high sucrose (HF/HS) diet or a regular diet supplemented or not with indomethacin (±INDO) for 7 weeks. Development of obesity, insulin resistance, and glucose intolerance was monitored, and the effect of indomethacin on glucose-stimulated insulin secretion (GSIS) was measured in vivo and in vitro using MIN6 β-cells. We found that supplementation with indomethacin prevented HF/HS-induced obesity and diet-induced changes in systemic insulin sensitivity. Thus, HF/HS+INDO-fed mice remained insulin-sensitive. However, mice fed HF/HS+INDO exhibited pronounced glucose intolerance. Hepatic glucose output was significantly increased. Indomethacin had no effect on adipose tissue mass, glucose tolerance, or GSIS when included in a regular diet. Indomethacin administration to obese mice did not reduce adipose tissue mass, and the compensatory increase in GSIS observed in obese mice was not affected by treatment with indomethacin. We demonstrate that indomethacin did not inhibit GSIS per se, but activation of GPR40 in the presence of indomethacin inhibited glucose-dependent insulin secretion in MIN6 cells. We conclude that constitutive high hepatic glucose output combined with impaired GSIS in response to activation of GPR40-dependent signaling in the HF/HS+INDO-fed mice contributed to the impaired glucose clearance during a glucose challenge and that the resulting lower levels of plasma insulin prevented the obesogenic action of the HF/HS diet.
ISSN: 0021-9258

hal-01074835
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01074835
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01074835/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01074835/file/JBC-2013-525220v2-Kristiansen-POSTPRINT.pdf
DOI : 10.1074/jbc.M113.525220

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : The disease, Heartwater, caused by the Anaplasmataceae E. ruminantium, represents a major problem for tropical livestock and wild ruminants. Up to now, no effective vaccine has been available due to a limited cross protection of vaccinal strains on field strains and a high genetic diversity of Ehrlichia ruminantium within geographical locations. To address this issue, we inferred the genetic diversity and population structure of 194 E. ruminantium isolates circulating worldwide using Multilocus Sequence Typing based on lipA, lipB, secY, sodB, and sucA genes. Phylogenetic trees and networks were generated using BEAST and SplitsTree, respectively, and recombination between the different genetic groups was tested using the PHI test for recombination. Our study reveals the repeated occurrence of recombination between E. ruminantium strains, suggesting that it may occur frequently in the genome and has likely played an important role in the maintenance of genetic diversity and the evolution of E. ruminantium. Despite the unclear phylogeny and phylogeography, E. ruminantium isolates are clustered into two main groups: Group 1 (West Africa) and a Group 2 (worldwide) which is represented by West, East, and Southern Africa, Indian Ocean, and Caribbean strains. Some sequence types are common between West Africa and Caribbean and between Southern Africa and Indian Ocean strains. These common sequence types highlight two main introduction events due to the movement of cattle: from West Africa to Caribbean and from Southern Africa to the Indian Ocean islands. Due to the long branch lengths between Group 1 and Group 2, and the propensity for recombination between these groups, it seems that the West African clusters of Subgroup 2 arrived there more recently than the original divergence of the two groups, possibly with the original waves of domesticated ruminants that spread across the African continent several thousand years ago.
ISSN: 2235-2988

hal-01594501
https://hal.archives-ouvertes.fr/hal-01594501
https://hal.archives-ouvertes.fr/hal-01594501/document
https://hal.archives-ouvertes.fr/hal-01594501/file/paper_MLST_ER_2016_%7B51027B58-C2C7-41C8-9746-BD8A9F387C87%7D.pdf
DOI : 10.3389/fcimb.2016.00111

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers
Résumé : International audience
An effective solution for increasing the exposure uniformity and efficiency of biological samples in in vitro bioelectromagnetic experiments at 60 GHz is proposed by introducing a novel choke ring antenna (CRA). The CRA is optimized to provide a uniform exposure of samples, whose dimensions are equivalent to those of a standard 35-mm Petri dish, positioned close to the antenna aperture, i.e., 10-20 wavelengths. The antenna prototype is fabricated in metallized foam. The realized exposure efficiency of the sample exceeds 55% (if estimated for an exposure uniformity better than - 0.5 dB). To validate the numerical results, the field intensity profiles on the surface of a high-water-content phantom have been experimentally obtained using a high-resolution infrared camera. Compared to the standard open-ended waveguide and horn antennas, typically used for millimeter-wave dosimetry, a twofold advantage of the proposed CRA is demonstrated, namely, the improvement of the exposure efficiency by a factor of 1.5 to 2 with a simultaneous reduction of the exposure distance by a factor of 8-2, respectively, depending on the type of the reference antenna. These advantages make the proposed CRA an excellent candidate for 60-GHz short-range exposure systems for in vitro bioelectromagnetic studies.
ISSN: 0018-9480

hal-00874349
https://hal.archives-ouvertes.fr/hal-00874349
DOI : 10.1109/TMTT.2013.2255619

Éditeur(s) : HAL CCSD
Résumé : International audience
Rhyme patterns in Old Chinese poems are important for the reconstruction of Old Chinese pronunciation, as they provide evidence for groups of words which formerly had similar pronunciation. Rhyme patterns can also be used to test Old Chinese reconstruction systems for consistency and plausibility, as reconstruction systems should minimize the conflict with attested rhyme patterns. Here, we build on the idea that rhyming in Old Chinese followed the principle of vowel purity, a tendency to disallow rhymes of words with different vowels, to develop a quantitative test for reconstruction systems of Old Chinese. The test is illustrated by comparing seven different Old Chinese reconstruction systems and by showing that, although the systems differ regarding their degree of vowel purity, the principle seems to hold for Old Chinese rhyme data.
Lingua Sinica

Droits : http://creativecommons.org/licenses/by/
hal-01555483
http://hal.upmc.fr/hal-01555483
http://hal.upmc.fr/hal-01555483/document
http://hal.upmc.fr/hal-01555483/file/10.1186_s40655-017-0021-8.pdf
DOI : 10.1186/s40655-017-0021-8

Éditeur(s) : HAL CCSD Oxford University Press
Résumé : International audience
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.
ISSN: 0305-1048

hal-01146849
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01146849
DOI : 10.1093/nar/gkv350
PUBMED : 25897122

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BackgroundMalaria is endemic in French Guiana, an overseas territory of France on the Guiana Shield. Since 2005, notified malaria cases are decreasing. However, new data show that malaria affects many Brazilian gold miners working illegally in French Guiana, the majority of whom are not counted in official data. In addition, one major concern is the usual practice of improper self-treatment in this mining population, raising fear of the development of antimalarial resistance. This prospective study, conducted in 2015, aimed to estimate the prevalence of Plasmodium spp. in illegal gold miners working in French Guiana. MethodsThe recruitment of gold miners was carried out in resting sites along the French Guiana-Suriname border, where they go for supplies, medical care or leisure. After recording agreement, three malaria diagnostic methods were performed: rapid diagnostic test, microscopy and PCR,ResultsAmong 421 persons recruited in the study, malaria prevalence, detected by nested-PCR, was 22.3% (CI=[18.3-26.3], n=94/421) of which 84% were asymptomatic. ConclusionThis significant malaria reservoir in a mobile and illegal population with difficult access to a health care system raises the threat of artemisinin resistance and puts the population of the Guiana Shield at risk of new transmission foci while countries of the region aim at malaria elimination. Even though French legislation may hamper dealing with this population, France must face the reality of malaria in illegal gold miners in order to meet its commitment to malaria elimination.
ISSN: 1475-2875

hal-01346800
https://hal.archives-ouvertes.fr/hal-01346800
https://hal.archives-ouvertes.fr/hal-01346800/document
https://hal.archives-ouvertes.fr/hal-01346800/file/2016%2C%20Douine%20-%20Prevalence%20of%20Plasmodium%20spp.%20in%20illegal%20gold%20miners%20in%20French%20Guiana%20in%202015.pdf
DOI : 10.1186/s12936-016-1367-6

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Predictive toxicology aims at developing methodologies to relate the results obtained from in vitro experiments to in vivo exposure. In the case of polycyclic aromatic hydrocarbons (PAHs), a substantial amount of knowledge on effects and modes of action has been recently obtained from in vitro studies of gene expression. In the current study, we built a physiologically based toxicokinetic (PBTK) model to relate in vivo and in vitro gene expression in case of exposure to benzo(a)pyrene (BaP), a referent PAH. This model was calibrated with two toxicokinetic datasets obtained on rats exposed either through intratracheal instillation or through intravenous administration and on an in vitro degradation study. A good agreement was obtained between the model's predictions and the concentrations measured in target organs, such as liver and lungs. Our model was able to relate correctly the gene expression for two genes targeted by PAHs, measured in vitro on primary human macrophages and in vivo in rat macrophages after exposure to BaP. Combining in vitro studies and PBTK modeling is promising for PAH risk assessment, especially for mixtures which are more efficiently studied in vitro than in vivo.
Toxicology Letters

hal-00873317
https://hal.archives-ouvertes.fr/hal-00873317
https://hal.archives-ouvertes.fr/hal-00873317/document
DOI : 10.1016/j.toxlet.2010.11.017
PUBMED : 21134426

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
The nine countries sharing the Amazon forest accounted for 89% of all malaria cases reported in the Americas in 2008. Remote sensing can help identify the environmental determinants of malaria transmission and their temporo-spatial evolution. Seventeen studies characterizing land cover or land use features, and relating them to malaria in the Amazon subregion, were identified. These were reviewed in order to improve the understanding of the land cover/use class roles in malaria transmission. The indicators affecting the transmission risk were summarized in terms of temporal components, landscape fragmentation and anthropic pressure. This review helps to define a framework for future studies aiming to characterize and monitor malaria.
ISSN: 1475-2875

inserm-00834790
http://www.hal.inserm.fr/inserm-00834790
http://www.hal.inserm.fr/inserm-00834790/document
http://www.hal.inserm.fr/inserm-00834790/file/1475-2875-12-192.pdf
DOI : 10.1186/1475-2875-12-192