Éditeur(s) : HAL CCSD Muséum national d'histoire naturelle
Résumé :  
Le rôle déterminant de la faune dans les processus de dissémination, de prédation des graines et de régénération naturelle des arbres en forêt tropicale américaine a été mis en évidence par de nombreuses études menées notamment en Guyane française. Nombreux sont les arbres qui offrent des ressources alimentaires aux animaux frugivores et granivores et sont également des essences recherchées par les exploitants forestiers de ce département d'Outre-Mer. Les pistes forestières ouvertes pour l'exploitation du bois sont des voies facilitant l'accès de la forêt aux chasseurs, professionnels ou non, lorsque ce ne sont pas les exploitants eux-mêmes qui exercent une forte pression cynégétique. La question se pose alors de savoir si, dans l'optique d'une meilleure gestion des formations forestières pour une utilisation à long terme de la ressource bois, il ne faut pas se soucier sérieusement de la préservation de cette faune, maillon indispensable au maintien de la diversité en forêt. Autrement dit, les deux activités, exploitation forestière et chasse, sont-elles compatibles avec le maintien des processus de régénération forestière ?
ISSN: 0183-5173

hal-01032077
https://hal.archives-ouvertes.fr/hal-01032077

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The cyp19a1 gene that encodes aromatase, the only enzyme permitting conversion of C19 aromatizable androgens into estrogens, is present as a single copy in the genome of most vertebrate species, except in teleosts in which it has been duplicated. This study aimed at investigating the brain expression of a cyp19a1 gene expressed in both gonad and brain of Japanese eel, a basal teleost. By means of immunohistochemistry and in situ hybridization, we show that cyp19a1 is expressed only in radial glial cells of the brain and in pituitary cells. Treatments with salmon pituitary homogenates (female) or human chorionic gonadotrophin (male), known to turn on steroid production in immature eels, strongly stimulated cyp19a1 messenger and protein expression in radial glial cells and pituitary cells. Using double staining studies, we also showed that aromatase-expressing radial glial cells exhibit proliferative activity in both the brain and the pituitary. Altogether, these data indicate that brain and pituitary expression of Japanese eel cyp19a1 exhibits characteristics similar to those reported for the brain specific cyp19a1b gene in teleosts having duplicated cyp19a1 genes. This supports the hypothesis that, despite the fact that eels also underwent the teleost specific genome duplication, they have a single cyp19a1 expressed in both brain and gonad. Such data also suggest that the intriguing features of brain aromatase expression in teleost fishes were not gained after the whole genome duplication and may reflect properties of the cyp19a1 gene of ancestral Actinopterygians.
ISSN: 1932-6203

hal-00877375
https://hal.archives-ouvertes.fr/hal-00877375
https://hal.archives-ouvertes.fr/hal-00877375/document
https://hal.archives-ouvertes.fr/hal-00877375/file/Expressionsur Aromatase-accepted.pdf
DOI : 10.1371/journal.pone.0044750

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In a study of a 15-year-old pasture in Martinique (French West Indies), abundance and organization of microarthropod communities were correlated with the spatial distribution of the earthworm Polypheretima elongata (Megascolecidae). In patches of high earthworm density (133 individuals m-2), microarthropod density was significantly higher (80 000 individuals m-2) than in patches with few earthworms (31 worms m-2 and 49 000 microarthropods m-2). The diversity of microarthropod communities followed a similar pattern, the Shannon index for Collembola communities being, respectively, 3.12 and 1.82 in and outside earthworm patches. These results suggest that mesofauna abundance and diversity might be at least partly determined by the activity of larger invertebrates, as a result of the dramatic effects that the latter group exerts upon soil structure, pore distribution and food resources.
ISSN: 0178-2762

hal-00505427
https://hal.archives-ouvertes.fr/hal-00505427
https://hal.archives-ouvertes.fr/hal-00505427/document
https://hal.archives-ouvertes.fr/hal-00505427/file/Loranger_et_al._1998b.pdf
DOI : 10.1007/s003740050394

Éditeur(s) : HAL CCSD Western Indian Ocean Marine Science Association
Résumé : International audience
Juan de Nova is one of the scattered islands known as Iles Eparses in the Mozambique Channel (Western Indian Ocean). Historically, they have been isolated from many anthropogenic influences which makes them ideal areas to study biodiversity for comparison with areas that are heavily impacted by urbanization and fishing. The programme BioReCie (Biodiversity, Resources and Conservation of Eparses Islands) undertook inventories of several marine groups, including echinoderms, which had hitherto not been assessed in Juan de Nova. A multidisciplinary team surveyed the reef slopes of the island using SCUBA to a depth of 25 m as well as the reef flats at low tide, collecting specimens and taking photos for identification. Sixty echinoderm species were found, with 51 occurring on the reef flats and in the lagoon and 22 on the reef slopes, comprising 21 species of Holothuroidea, 16 Ophiuroidea, 10 Echinoidea, 7 Asteroidea, and 6 Crinoidea. Commercial species of Holothuroidea, some of which are classified as endangered in the IUCN red list, i.e. Thelenota ananas and Holothuria nobilis, were present on the reef flats, reef slopes and in the lagoon of the island, indicating the value that protection has on biodiversity.
ISSN: 0856-860X

hal-01306709
http://hal.univ-reunion.fr/hal-01306709
http://hal.univ-reunion.fr/hal-01306709/document
http://hal.univ-reunion.fr/hal-01306709/file/A%20First%20Inventory%20of%20Echinodermata%20at%20Juan%20de%20Nova_hal.pdf

Éditeur(s) : HAL CCSD Météo et Climat
Résumé : International audience
D'initiative française, le projet international HyMeX a pour objectif d'améliorer la compréhension du cycle de l'eau en Méditerranée, de sa variabilité, de l'échelle de l'événement météorologique aux échelles saisonnières et interannuelles, et de ses caractéristiques sur une décennie, dans un contexte de changement global. Le projet est motivé par le rôle déterminant des processus de mésoéchelle, couplés entre l'atmosphère, la mer et la terre, sur la variabilité du système climatique et sur le déclenchement d'événements hydrométéorologiques extrêmes (précipitations et inondations, vents forts et convection océanique, canicules et sécheresses). Le projet vise enfin à évaluer les conséquences de ces événements extrêmes sur la vulnérabilité sociale et économique de cette région et sa capacité d'adaptation.
ISSN: 0026-1181

hal-00828758
https://hal.archives-ouvertes.fr/hal-00828758
https://hal.archives-ouvertes.fr/hal-00828758/document
https://hal.archives-ouvertes.fr/hal-00828758/file/meteo_2013_80_23%20%281%29.pdf
DOI : 10.4267/2042/48792

Éditeur(s) : HAL CCSD Paris : Muséum national d'histoire naturelle
Résumé : International audience
The present study aimed to identify the Aetobatus species present in French Polynesia using DNA barcoding. Our study contributesto a better understanding of the distribution of species in the Aetobatus complex, which is necessary for a correct evaluation of the conservation status of the different species.
ISSN: 0399-0974

hal-01325811
https://hal-univ-perp.archives-ouvertes.fr/hal-01325811

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
Total genomic DNA of eight colonies for each of the two species, Acropora muricata and Porites lutea, sampled on the west coast of Reunion Island, was isolated using DNeasy Blood & Tissue kit (Qiagen™) following the manufacturer’s instructions and sent to GenoScreen, Lille, France (www.genoscreen.fr).
ISSN: 1877-7252

hal-01254248
https://hal.archives-ouvertes.fr/hal-01254248
https://hal.archives-ouvertes.fr/hal-01254248/document
https://hal.archives-ouvertes.fr/hal-01254248/file/G%C3%A9lin%20et%20al.%20-%202015%20-%20Isolation%20and%20characterization%20of%2022%20microsatellit_hal.pdf
DOI : 10.1007/s12686-015-0493-8

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
NWA2268 is a polymict eucrite discovered in the Sahara, at southwest Algeria, close to the region of Tindouf. This meteorite weighs 65 g and presents a thin black fusion crust. The rock is fine- to medium-grained breccia and contains mineral fragments of plagioclases, pyroxenes, spinel, olivine and silica. The rock contains some basaltic fragments with sub-ophitic or cumulative textures, constituted by plagioclases and exsolved pigeonite. Pyroxferroite grains are present and locally destabilised in an association of hedenbergite, fayalite and silica. It also presents unequilibrated eucritic clast with heterogeneous pyroxenes and plagioclases compositions. Pyroxenes in the all of the other clasts have equilibrated composition, with exolved pigeonites with augite lamellaes. This polymict eucrite contains also partially devitrified glass that represents impact melts linked to impact event. None recrystallization of this glass confirms a lack of post-brecciation metamorphism. Diogenitic fragments are less abundant than 10 %. The oxygen isotopic composition of NWA2268 is Δ17O (−0.43). This meteorite is interpreted as belonging to the HED group attributed to the 4-Vesta asteroid.
ISSN: 1866-7411

hal-00903591
https://hal.archives-ouvertes.fr/hal-00903591
DOI : 10.1007/s12517-012-0624-4

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Highly siderophile elements (Platinum-group elements, Au and Re) are currently assumed to reside inside base metal sulfides (BMS) in the convecting upper mantle. However, fertile lherzolites sampled by Pyrenean orogenic peridotite massifs are unexpectedly rich in 0.5-3 mu m large micronuggets of platinum-group minerals (PGM). Among those, sulfides from the laurite-erlichmanite series (Ru, Os(Ir)S(As)2), Pt-Ir-Os alloys and Pt-Pd-Te-Bi phases (moncheite-merenskyite) are predominant. Not only the BMS phases but also the PGM micronuggets must be taken into account in calculation of the PGE budget of orogenic fertile lherzolites. Laurite is a good candidate for equilibrating the whole-rock budget of Os, it and Ru while accounting for supra-chondritic Ru/Ir-N. Textural relationships between PGMs and BMS highlight heterogeneous mixing between refractory PGMs (laurite/Pt-Ir-Os alloys) inherited from ancient refractory lithospheric mantle and late-magmatic metasomatic sulfides precipitated from tholeiitic melts. "Low-temperature" PGMs, especially Pt-Pd bismuthotellurides should be added to the list of mineral indicators of lithosphere refertilization process. Now disseminated within fertile lherzolites, "lithospheric" PGMs likely account for local preservation of ancient Os model ages (up to 2 Ga) detected in BMS by in-situ isotopic analyses. These PGMs also question the reliability of orogenic lherzolites for estimating the PGE signature of the Primitive Silicate Earth.
ISSN: 0012-821X

hal-00486109
https://hal.archives-ouvertes.fr/hal-00486109
DOI : 10.1016/j.epsl.2009.11.017

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We report trace element analyses by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) of metal grains from nine different CR chondrites, distinguishing grains from chondrule interior ("interior grains"), chondrule surficial shells ("margin grains"), and the matrix ("isolated grains"). Save for a few anomalous grains, Ninormalized trace element patterns are similar for all three petrographic settings, with largely unfractionated refractory siderophile elements and depleted volatile Au, Cu, Ag, S. All three types of grains are interpreted to derive from a common precursor approximated by the least-melted, fine-grained objects in CR chondrites. This also excludes recondensation of metal vapor as the origin of the bulk of margin grains. The metal precursors were presumably formed by incomplete condensation, with evidence for high-temperature isolation of refractory platinum-group-element (PGE)-rich condensates before mixing with lower temperature PGE-depleted condensates. The rounded shape of the Ni-rich, interior grains shows that they were molten and that they equilibrated with silicates upon slow cooling (1-100 K h 1), largely by oxidation/evaporation of Fe, hence their high Pd content, for example. We propose that Ni-poorer, amoeboid margin grains, often included in the pyroxene-rich periphery common to type I chondrules, result from less intense processing of a rim accreted onto the chondrule subsequent to the melting event recorded by the interior grains. This means either that there were two separate heating events, which formed olivine/ interior grains and pyroxene/margin grains, respectively, between which dust was accreted around the chondrule, or that there was a single high-temperature event, of which the chondrule margin records a late "quenching phase," in which case dust accreted onto chondrules while they were molten. In the latter case, high dust concentrations in the chondrule-forming region (at least three orders of magnitude above minimum mass solar nebula models) are indicated.
ISSN: 1086-9379

hal-01003975
https://hal.archives-ouvertes.fr/hal-01003975
DOI : 10.1111/maps.12212

Éditeur(s) : HAL CCSD Le Cherche midi CNRS
Résumé : 192 pages
National audience
https://hal.archives-ouvertes.fr/hal-01118878

ISBN : 978-2-7491-4075-9
hal-01118878
https://hal.archives-ouvertes.fr/hal-01118878

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
ISSN: 0944-1344

hal-01680552
https://hal.univ-antilles.fr/hal-01680552
DOI : 10.1007/s11356-015-5682-1

Éditeur(s) : HAL CCSD American Society for Microbiology
Résumé :  
We report the isolation and identification of a new quassinoid named simalikalactone E (SkE), extracted from a widely used Amazonian antimalarial remedy made out of Quassia amara L. (Simaroubaceae) leaves. This new molecule inhibited the growth of Plasmodium falciparum cultured in vitro by 50%, in the concentration range from 24 to 68 nM, independently of the strain sensitivity to chloroquine. We also showed that this compound was able to decrease gametocytemia with a 50% inhibitory concentration sevenfold lower than that of primaquine. SkE was found to be less toxic than simalikalactone D (SkD), another antimalarial quassinoid from Q. amara, and its cytotoxicity on mammalian cells was dependent on the cell line, displaying a good selectivity index when tested on nontumorogenic cells. In vivo, SkE inhibited murine malaria growth of Plasmodium vinckei petteri by 50% at 1 and 0.5 mg/kg of body weight/day, by the oral or intraperitoneal routes, respectively. The contribution of quassinoids as a source of antimalarial molecules needs therefore to be reconsidered.
ISSN: 0066-4804

hal-01032126
https://hal.archives-ouvertes.fr/hal-01032126
DOI : 10.1128/AAC.00951-09

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
After Jurassic rifting, numerous carbonate platforms (i.e., the Orizaba, Cordoba and Golden Lane-Tuxpan platforms) developed during the Lower and Middle Cretaceous episode of thermal subsidence along the western passive margin of the Gulf of Mexico, with intervening basinal domains (i.e., the Tampico-Misantla, Zongolica, Veracruz and Deep Gulf of Mexico - DGM - basins).;During the Late Cretaceous-Paleocene, the east-verging Sierra Madre Oriental thrust belt developed, resulting in tectonic uplift and unroofing of the allochthonous units (i.e. tectonic units made up of former Orizaba and Cordoba platforms and Zongolica Basin series). This new topography provided also an important source of clastics to feed the adjacent foredeep, where coeval tectonic loading accounted for the bending of the foreland lithosphere. However, shallow water facies or even emersion persisted until the Eocene in the forebulge area (at the present location of the Golden Lane), preventing locally the clastics to reach the DGM. This topographic barrier was ultimately bypassed by the clastics only during the Oligocene and Neogene, once (1) the prograding clastic wedge had exceeded accommodation, and (2) the long lasting thermal subsidence of the passive margin could overpass the effect of the bending and force the former bulge to sink.;Numerous paleo-thermo-meters (Tmax, Ro), paleo-thermo-barometers (fluid inclusions), PVT and coupled forward kinematic and thermal modeling have been used to calibrate and date the progressive unroofing of the thrust belt. Coupled tectonic and sedimentologic modeling was applied in the foreland to predict the distribution of sand versus shale ratios in the Oligocene to Plio-Quaternary clastic sedimentary wedge of the passive margin, where gravitational gliding of post-Eocene series occurred during the Neogene along major listric faults.;Mantle dynamics are advocated as the main process accounting for post-orogenic uplift and regional tilting of the basement, which initiated a massive transfer of sediments from the Cordillera towards the Gulf of Mexico, from Oligocene onward, resulting in a destabilization and gravitational collapse of the western slope of the Gulf of Mexico in Neogene times.
ISSN: 0040-1951

hal-00445248
https://hal.archives-ouvertes.fr/hal-00445248
DOI : 10.1016/j.tecto.2009.04.012

Éditeur(s) : HAL CCSD
Résumé : National audience
We propose a method to solve the problem of clustering individuals described by mixed variables structured in blocks. It is a hierarchical method with two levels similar to Hierarchical Principal Component Analysis presented by Wold, based on the mixed topology maps (MTM). The first step consists in establishing, for each block of mixed variables, a clustering representing a synthesis of local individuals at the block level. The second step is to re-apply MTM on the weighted results of the first level. We obtain a global clustering of individuals, consensus among the partitions from level 1. The proposed method is illustrated on data from the national survey in the French housing stock carried out in 2003-2005 by the Observatory for Indoor Air Quality (OQAI).
Fouille de Données Complexes, complexité liée aux données multiples et massives (FDC)
bordeaux, France

hal-00748841
https://hal.archives-ouvertes.fr/hal-00748841
https://hal.archives-ouvertes.fr/hal-00748841/document

Éditeur(s) : HAL CCSD
Résumé : International audience
Conférence MISTRALS PAELOMEX
Montpellier, France

hal-01683547
https://hal-univ-tlse2.archives-ouvertes.fr/hal-01683547

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Aims: Astrocaryum sciophilum (Miq.) Pulle (Arecaceae) is an understorey palm, endemic to north-eastern South America with a patchy distribution. We tested the hypothesis that the spatial distribution of this palm species is not in equilibrium but is slowly colonizing the forest understorey. Location: Inventories and seed dispersal studies were conducted in the undisturbed tropical forest close to the Nouragues research station, French Guiana. Additional data were collected in the entire territory of French Guiana. Methods: We studied the demography of A. sciophilum on a 20-ha plot located at the edge of its distribution. The age of the palms was estimated by postulating an exponentially decreasing abundance by age class. Direct seed dispersal experiments were also conducted, to estimate dispersal parameters. The seeds of A. sciophilum were dispersed only by rodents. This information was used to parameterize a forest growth simulator, to study the spatial spread of this species. Results: Within the sampling plot, the density of A. sciophilum dropped sharply from about 500 individuals per hectare to zero. The maturation age was estimated to be 170 ± 70 years, and over 55 years with 95% confidence. Seed-dispersal experiments yielded an average seed dispersal distance of 11 m and a maximum estimated dispersal distance of 125 m across a generational span of 55 years to maturity. Therefore, the maximal estimated colonization speed is 2.3 m/y. Conclusions: Empirical results and numerical simulations suggest that the boundary of the A. sciophilum population is a colonization front, and that the range of this species is slowly expanding. The implications of this result in respect of palaeoenvironmental changes in this region are discussed.
ISSN: 1466-822X

hal-01032154
https://hal.archives-ouvertes.fr/hal-01032154
DOI : 10.1046/j.1466-822X.2003.00020.x

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Despite a relatively 'uniform' fertile composition (Al2O3 = 2 center dot 19-4 center dot 47 wt %; Fo% = 89 center dot 2 +/- 0 center dot 3%; Cr#(Spl) = 8 center dot 9 +/- 1 center dot 5%), the Montferrier peridotite xenoliths show a wide range of S contents (22-590 ppm). Most sulphides are interstitial and show peculiar pyrrhotite-pentlandite intergrowths and low abundances of Cu-rich phases. Sulphide-rich samples are characterized by strong enrichment in the light rare earth elements and large ion lithophile elements without concomitant enrichment of the high field strength elements. Such trace-element fractionation is commonly ascribed to metasomatism by volatile-rich melts and/or carbonatitic melts. S and Se (11-67 ppb), as well as S/Se (up to approximate to 12 000), are correlated with La/Sm. Cu, however, remains broadly constant (30 +/- 5 ppm). These features strongly suggest that the percolation-reaction of such volatile-rich fluids has led to sulphide enrichment with an atypical signature marked by strong fractionation of the chalcophile elements (i.e. S vs Se and Cu). S-rich xenoliths are also characterized by high (Pd/Ir)(N) (1 center dot 2-1 center dot 9; where subscript N indicates normalized to chondrite), (Pd/Pt)(N) between 1 center dot 5 and 2 center dot 2, and (Os/Ir)(N) up to 1 center dot 85. Despite the relative uniform fertile composition of the xenoliths, Re/Os ranges between 0 center dot 02 and 0 center dot 18. Os-187/Os-188 is extremely variable even within a single sample and can be as high as 0 center dot 1756 for the most S-rich samples. Sulphides show highly fractionated and variable abundances of the highly siderophile elements (HSE) [0 center dot 03 (Pd/Ir)(N) < 1283] and Re-Os isotopic composition (0 center dot 115 < Os-187/Os-188 < 0 center dot 172). Such variation can be observed at the thin-section scale. Whole-rock and in situ sulphide data demonstrate that chalcophile and HSE systematics and the Os isotopic composition of the upper mantle could be significantly modified through metasomatism, even with volatile-rich fluids. These features highlight the complex behaviour of the HSE in fluid-rock percolation-reaction models and suggest a complex interplay between sulphide addition (crystallization or sulphidation) and partial equilibration of pre-existing sulphide. The specific fractionations observed in chemical proxies such as S and Se, Os and Ir, and Pd and Pt, as well as the low abundance of Cu-rich sulphides, suggest that sulphide addition may not have occurred via sulphide melts. Rather, we infer that S was present as a dissolved species in a (supercritical) oxidizing, volatile-rich fluid (C-O-H-S +/- Cl) along with other chalcophile and siderophile elements such as Os, Pd, Re and Au. The highly radiogenic Os composition of this fluid ( Os-187/ Os-188 > 0 center dot 17) would imply that such fluids are derived from an uncommon type of mantle source possibly related to carbonatite melts.
ISSN: 0022-3530

hal-00644524
https://hal.archives-ouvertes.fr/hal-00644524
DOI : 10.1093/petrology/egr038

Éditeur(s) : HAL CCSD
Résumé : International audience
Space technologies have been used increasingly for assessing the risk of infection by vector-borne diseases, providing tools for delimiting the distribution of vectors. As rodent-borne diseases are a growing concern in Thailand since the emergence of leptospirosis starting in 1998, this study was set up to determine the hazard, related to the potential presence of the main rodent with medical importance, Bandicota indica (Bechstein, 1800), the great bandicoot rat, widely distributed in the country. It was conducted in Nakhon Pathom province (west of Bangkok, Thailand) following a large rodent sampling. Habitats of Bandicota indica were delimited using a Landsat 5 Thematic Mapper image and Multiscope remote sensing software (Fleximage, France). Environmental variables, related to its ecology, were identified by describing the place and surroundings of each capture. An extrapolation to the entire province could generate the potential distribution of Bandicoot rats. This delineation helped at first to improve further sampling ofBandicota indica and adapt the model to other study areas. Furthermore it allowed developing researches on the dynamics of rodents and the risk of transmission of rodent-borne diseases.
Natural History Journal of Chulalongkorn University

ird-00714409
http://hal.ird.fr/ird-00714409
http://hal.ird.fr/ird-00714409/document
IRD : fdi:010045886

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : 1. This study focuses on the importance in hyperdiverse regions, such as the Amazonian forest, of accelerating and optimising the census of invertebrate communities.2. We carried out low-intensity sampling of tropical moth (Lepidoptera) assemblages in disturbed forest fragments in Brazil.3. We combined DNA barcoding and taxonomists' expertise to produce fast and accurate surveys of local diversity, including the recognition and census of undescribed and endemic species.4. Integrating expert knowledge of species distributions, we show that despite limited sampling effort, our approach revealed an unexpectedly high number of new and endemic species in severely threatened tropical forest fragments.5. These results highlight the risk of silent centinelan extinctions and emphasise the urgent need for accelerated invertebrate surveys in high-endemism and human-impacted tropical forests.
EISSN: 1752-458X

hal-01602363
https://hal.archives-ouvertes.fr/hal-01602363
DOI : 10.1111/icad.12187
PRODINRA : 389851