Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : In atoll lagoons of French Polynesia, growth and reproduction of pearl oysters are mainly driven by plankton concentration. However, the actual diet of black-lip pearl oysters P. margaritifera in these lagoons is poorly known. To fill this gap, we used the flow through chamber method to measure clearance rates of P. margaritifera in Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia). We found : (i) that pearl oysters cleared plankton at a rate that was positively related to plankton biovolume, (ii) that nanoflagellates were the main source of carbon for the pearl oysters, (iii) that the quantity and origin of carbon filtrated by pearl oysters was highly dependent on the concentration and composition of plankton. These results provide essential elements for the comprehension of growth and reproduction variability of pearl oysters in atoll lagoons of French Polynesia.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012 , Vol. 65 , N. 10-12 , P. 490-499

Droits : 2012 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00078/18888/16599.pdf
DOI:10.1016/j.marpolbul.2012.03.026
http://archimer.ifremer.fr/doc/00078/18888/

Éditeur(s) : HAL CCSD Editions Paralia CFL
Résumé : Les lagunes du Golfe du Lion constituent un patrimoine naturel reconnu ainsi qu'un enjeu essentiel pour les activités économiques locales. Leur évolution morphologique est donc une question importante dans le contexte actuel de changements climatiques et environnementaux. L'analyse de données topo-bathymétriques du système des étangs Palavasiens a permis de mieux cerner son évolution depuis le XVIIIème siècle. Les actions anthropiques et les apports du bassin versant apparaissent comme les facteurs principaux de l'évolution du système. Au cours des 40 dernières années, le système montre une tendance à se combler lentement avec une accumulation moyenne de 1,3 mm/an. Des différences de fonctionnement sur chacun des étangs sont mises en lumière en fonction des forçages naturels et anthropiques locaux. Lagoons of the Gulf of Lion, recognized for their natural heritage, are a key challenge for local economic activities. Their morphological evolution is an important issue in the current context of climate and environmental changes. Analysis of topo-bathymetric data of the Palavasian lakes system has helped to clarify its evolution since the XVIII th century. Human impacts and contributions from the watershed appear to be the main drivers governing the evolutionof the system. Over the past40 years, the system shows a tendency to slowly fill at an accumulation rate of 1.3 mm/year. Differences between lagoons are highlighted according to local natural and anthropogenic forcings.
ISSN: 1760-8716

hal-00854075
https://hal.archives-ouvertes.fr/hal-00854075
DOI : 10.5150/revue-paralia.2011.007

Éditeur(s) : Montpellier SupAgro
Résumé : One of the main challenges in ecology is to understand how global changes affect biodiversity and what are the consequences on ecosystem functioning. In this perspective, the functional diversity of communities is a cornerstone since it allows linking environment, community structure and ecosystem properties. The aim of this thesis is thus to improve the understanding of functional diversity dynamic (i) in relation to natural variability of environmental conditions and (ii) under anthropogenic disturbances. As a first step we have developed a new methodological framework allowing to (1) describe fish functional niches based on functional traits, and (2) to quantify functional diversity within (α) and among (β) sites thanks to new indices. In a second step we have studied the spatiotemporal dynamic of the functional structure of fish and nektonic communities from the Terminos lagoon (Mexico). This tropical estuarine ecosystem is an appropriate ecological model for our problematic as it is characterized by a strong environmental variability, a high biological diversity and is under a strong human pressure. We have put in light the stability of the functional and trophic structures of communities along environmental gradients, despite a very strong species turnover. This stability is determined by the dominance of a couple of functional groups inside which species are replacing each others according to their environmental preferences. However, at a long-term scale, we have demonstrated a functional diversity loss in a part of the lagoon despite an increase of species richness. This paradox has to be related to the decrease of species associated to seagrass and the increase of more estuarine species.
Un des enjeux majeurs de l'écologie est de comprendre comment les changements globaux affectent la biodiversité et quelles en sont les conséquences sur le fonctionnement des écosystèmes. Dans cette perspective, la diversité fonctionnelle des communautés est un outil clé permettant de lier l'environnement, la structure des communautés et les propriétés écosystémiques. L'objectif de cette thèse est donc d'améliorer la compréhension de la dynamique de la diversité fonctionnelle (i) face à des conditions environnementales naturellement variables et (ii) face à des perturbations d'origine anthropique. Dans un premier temps nous avons mis en place un socle méthodologie nous permettant de (1) définir la niche fonctionnelle des poissons à partir de traits fonctionnels et (2) de quantifier les diversités fonctionnelles intra (α) et inter (β) échantillons avec de nouveaux indices. Dans un second temps nous avons étudié la dynamique spatio-temporelle de la structure fonctionnelle des communautés ichtyologiques et nectoniques peuplant la lagune de Terminos (Mexique). Cet écosystème estuarien tropical est un modèle d'étude adapté à notre problématique car il présente une forte variabilité environnementale, une forte diversité biologique et est sous forte pression anthropique. Nous avons mis en évidence une stabilité de la structure fonctionnelle et trophique des communautés face aux gradients environnementaux très marqués, et donc malgré un fort taux de remplacement des espèces entre les communautés. Cette stabilité est due à la dominance de quelques groupes fonctionnels à l'intérieur desquels les espèces se remplacent suivant leurs preferendums environnementaux. Néanmoins, à plus long terme, nous avons démontré qu'une portion de la lagune avait subi une perte de diversité fonctionnelle et ce malgré une augmentation de la richesse spécifique. Ce paradoxe est à relier au remplacement des espèces inféodées aux herbiers de phanérogames par des espèces plus estuariennes.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6178.pdf
http://archimer.ifremer.fr/doc/00000/6178/

Éditeur(s) : Gauthier-Villars
Résumé : During the year 1980, monthly observations were made on the distribution and dynamics of fish populations in two mangrove lagoons (Belle-Plaine and Manche-a-Eau). A total of 39 species was found in the two mangrove lagoons but the maximum number observed did not exceed 19 species for each sampling. The species were separated into four main groups: (1) the sedentary species which spend their whole life in the mangrove lagoons; (2) the species only represented by juvenile individuals (the greatest group); (3) the species occurring occasionally in the mangrove lagoon; (4) the species only observed during the reproduction period. Three demographic models were tested: the models of Preston, Motomura and MacArthur. Preston better fitted the population of Belle-Plaine (better value of the distance of Matusita). Motomura better suited the population of Manche-a-Eau, which can be explained by the dominance of a sedentary species, which adapts better to difficult ecological conditions.
Oceanologica Acta, Special issue (0399-1784) (Gauthier-Villars), 1982

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00246/35726/34234.pdf
http://archimer.ifremer.fr/doc/00246/35726/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Ciguatera Fish Poisoning (CFP) is a non-bacterial seafood poisoning well characterized in the remote archipelagos of French Polynesia, yet poorly documented in the Society archipelago, most notably on Moorea, the second most populated island in French Polynesia, which counts a high proportion of fishermen fishing on a regular basis. To address this knowledge gap, a holistic study of the ciguatera issue was conducted on Moorea. First, ciguatera risk was analysed in terms of incidence rate, fish species most commonly involved and risk stratification in Moorea lagoon based on 2007–2013 epidemiological data. A mean incidence rate of 8 cases per 10,000 inhabitants for the study period and an average under-reporting rate of 54% were found. Taking into account hospitalization and medication fees, and loss of productive days, the health-related costs due to CFP were estimated to be USD $1613 and $749 for each reported and unreported case, respectively, with an overall cost of USD $241,847 for the study period. Comparison of the present status of CFP on Moorea with a risk map established in the late 1970’s showed that the spatial distribution of the risk has stayed relatively stable in time, with the north shore of the island remaining the most prone to ciguatera. Evaluation of the current knowledge on CFP among different populations groups, i.e. fishermen, residents and visitors, was also conducted through direct and indirect interviews. About half of the fishermen interviewed were actually able to identify risky fishing areas. While, overall, the CFP risk perception in the fishing community of Moorea seemed accurate, although not scientifically complete, it was sufficient for the safe practice of their fishing activities. This may be due in part to adaptive responses adopted by 36% of the fishermen interviewed, such as the avoidance of either high-risk fishing sites or toxic species. At the residents and visitors’ level, the study points out a striking lack of awareness of the CFP issue among visitors, as compared to local residents. Indeed, less than 25% of Moorea visitors vs. an average of 98% in residents were aware of CFP or of its presence on the island. Interestingly, evaluation of the fish consumption preferences showed that 70% of visitors do not consume lagoon fish during their stay, not for fear of CFP, but mainly due to the lack of availability of these species in recreational facilities or because they have nutritional preference for pelagic fish. This lack of awareness, along with the report by several CFP patients of the consumption of fish species yet banned for sale, stress the need for improved communication efforts on this critical issue among both residents and visitors on Moorea. The implementation of a public outreach strategy is proposed, based on both existing information networks and low-cost communication actions through information displays at various strategic locations, e.g. Tahiti-Faa’a international airport, the ferry boat station, recreational facilities, as well as the major trading points on Moorea Island.
ISSN: 1568-9883

hal-01391648
https://hal-univ-perp.archives-ouvertes.fr/hal-01391648
DOI : 10.1016/j.hal.2016.10.003

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : International audience
A sediment core encompassing 3500 years of continuous sedimentation has been collected from a coastal lagoon located on the southwestern French Mediterranean coast. Lead concentrations and stable isotopes show that the sediments have recorded the three major periods of Pb pollution: the Etruscan-Greek-Roman period (650 BC to AD 50), the medieval period (AD 650 to AD 1450), and the modern period (from around AD 1850 to the present). These periods were separated by low pollution periods during the Dark Ages (between AD 50 and 650) and during the 16th century. From the end of the 19th century to the 1960s, Pb pollution increased exponentially. Coal combustion was the major source of Pb in the lagoon in the second half of the 20th century. Both the decrease in coal consumption and the ban on leaded gasoline resulted in a decrease in Pb pollution by a factor of 1.5 between 1973 and 1995. From 1991, sewage treatment plants and incinerators could be the major source of Pb. The average baseline Hg concentration from 1525 BC to AD 900 was 0.017 ± 0.003 μg g(-1) (n = 54). The Hg concentrations profile shows three major peaks: in AD 1150, AD 1660, and AD 1969, with the concentrations being respectively 8, 5, and 34 times higher than the baseline levels. The medieval peak (AD 1150) is attributed the medical use of Hg in the town of Montpellier and/or the burning of soil and vegetation. Noticeable Hg pollution was also detected during the 17th century in relation to gold and silver amalgamation in Europe. From the end of the 19th century, Hg concentrations increased exponentially until 1969. This modern pollution is attributed to the burning of coal.
ISSN: 0013-936X

halsde-00639280
https://hal.archives-ouvertes.fr/halsde-00639280

Éditeur(s) : Actes de colloques Ifremer, Tahiti, French Polynesia, 20 Feb - 4 Mar 1989, n°9, chap. 43, pp.461-484
Résumé : Species with a very high potential for aquaculture, allowing development projects on a short terms basis: the seabass originating from S.E. Asia. Species, potentially interesting but presenting some drawbacks, as difficulties to perform larval rearing or presenting pathological problem. Species considered as difficult to rear and not retained like Siganus argenteus , Siganidae or Caranx ignobilis , Carangidae. The future development of finfish in Polynesia is emphasized and a project of sea bass netcage culture in Polynesian lagoon is presented.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1989/acte-1474.pdf
http://archimer.ifremer.fr/doc/00000/1474/

Éditeur(s) : Gauthier-Villars
Résumé : Fish communities from two lagoon ecosystems, Ria Formosa (Portugal) and Grand Cul-de-Sac Marin (Guadeloupe), show interesting similarities of spatial and temporal organization. On the temporal scale, three community changes are observed in both systems, corresponding to massive arrivals and/or departures of migratory species. However, these migrations are more conspicuous in the Ria Formosa than in the Grand Cul-de-Sac Marin. On a spatial scale, the community structure is also largely determined by migratory species, whose abundance is a factor of homogenization. This is clearly observed in Ria Formosa, where the lagoon selection applies on a regional scale. Conversely, the community of sedentary fish identifies remarkable stations affected by chronic aggressions such as tourism or pollution. An explicative analysis, comprising a discriminant analysis and multiple regressions was realized on the data collected in the Grand Cul-de-Sac Marin. This analysis made it possible to determine the important environmental descriptors in the two complementary processes involved in recruitment: migrant availability, which determines the temporal organization of the fish assemblage. These migrations are explained by water temperature and salinity, two descriptors controlled by climatic conditions; the settlement process, which determines the spatial organization of the fish assemblage. This is explained by habitat descriptors such as visibility and turtlegrass blade length, or trophic descriptors, such as primary production, zooplankton density or nitrate concentration.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 3 , P. 291-301

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21056/18682.pdf
http://archimer.ifremer.fr/doc/00099/21056/

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Pearl culture industry represents one of the dominant business sector of French Polynesia. However, it still entirely relies on unpredictable spat collection success. Our aim was to assess the influence of natural plankton concentration fluctuations on maturation and spawning of the black lip pearl oyster Pinctada margaritifera, during a 4 months survey conducted in Ahe atoll lagoon. Plankton concentration was assessed by chlorophyll a extraction and by microscope counts while gonadic index, gonado-visceral dry weights and histology were used to measure pearl oysters reproduction activity. We found that (i) plankton concentration fluctuations were mainly related to wind regime, (ii) gametogenesis rate was mainly related to plankton concentration, (iii) spawning occurred when maximal gonad storage was reached. (iv) plankton concentration was the main spawning synchronizing factor. These results contribute explaining P. margaritifera spat collection variability in French Polynesian atoll lagoon. (C) 2012 Elsevier Ltd. All rights reserved.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012 , Vol. 65 , N. 10-12 , P. 463-470

Droits : 2012 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00101/21201/19697.pdf
DOI:10.1016/j.marpolbul.2012.03.027
http://archimer.ifremer.fr/doc/00101/21201/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
PurposeMarine mangrove sediments in the Manche-à-Eau lagoon (Guadeloupe, Caribbean Sea) harbor locally extensive, white microbial mats. These mats cover the surface of reduced sediments near the roots of red mangrove trees, Rhizophora mangle, and are mainly composed of sulfur-oxidizing bacteria belonging to the Beggiatoaceae family, with some filamentous cyanobacteria. The goal of this study was to investigate the possible influence of sediment characteristics on the presence of these microbial mats.Materials and methodsFour push cores were collected in April 2013, two from zones with microbial mats and two from zones without mats. Sediment characteristics (grain-size distribution, mineralogy, total organic carbon (TOC) and total nitrogen (TN) contents, atomic TOC/TN ratios, and organic matter (OM) δ13C values) were compared for all four cores.Results and discussionSignificant differences were observed between sediments below microbial mats and those without mats. Sediments with microbial mats contained greater amounts of clay, and higher TOC, TN, and TOC/TN ratios, with lower total carbonate content and δ13C values. The higher clay content most likely results from lower fluid flow velocity near to mangrove roots, while higher TOC/TN ratios and lower δ13C values indicate higher inputs of OM from mangrove trees. These results are consistent with the fact that microbial mats were observed near the roots of mangrove trees, which trap OM from terrestrial vegetation and fine sediments.ConclusionsThe grain-size distribution of sediment particles, the total carbonate content, and the δ13C values are the main parameters discriminating between zones with microbial mats and those without mats. Variations in total carbonate content, which is mainly of biogenic origin, result from conditions that are more favorable for benthic organisms in zones without microbial mats. Variations of the TOC/TN ratios are controlled by the presence of a non-negligible amount of inorganic nitrogen bound to surface clay mineral particles and/or by microbial processes.
ISSN: 1439-0108

hal-01545903
https://hal.archives-ouvertes.fr/hal-01545903
DOI : 10.1007/s11368-016-1555-6

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : En Indonésie orientale, entre l’île de Sumbawa et celle de Florès, se trouve le parc national de Komodo, du nom de la principale île habitée par les fameux varans, un superbe espace naturel désormais préservé par l’UNESCO et entouré de récifs coralliens. Quelques familles de pêcheurs, la plupart musulmans, peuplent ce petit archipel aujourd’hui prisé par les touristes internationaux pour ses dragons et ses lagons. En réalité, les varans géants de Komodo ne sont pas les derniers témoins de la préhistoire, mais d’énormes lézards, impressionnants, très photogéniques et parfois dangereux.Un endroit idéal pour s’adonner à une forme singulière de tourisme d’aventure, même s’il est aujourd’hui plus de masse que de niche. Entre une plage balnéaire et une balade en mini croisière, quelques dizaines de milliers de touristes annuels viennent approcher ces drôles de dragons qui effraient autant qu’ils fascinent les visiteurs. Aussi, promeneurs, baigneurs et excursionnistes se croisent — le temps d’un frisson bien encadré, il est vrai dans un décor de rêve — dans ce parc national, tous animés par les mêmes volontés et curiosité de « voir pour de vrai » cette créature étrange qui stimule notre imaginaire rempli de dinosaures.
In eastern Indonesia, between the island of Sumbawa and Flores that, is the Komodo National Park, named after the main island where the famous lizards are found, a beautiful natural area now protected by UNESCO and surrounded by reefs coral. Some families of fishermen, most Muslims inhabit this small archipelago prized today by international tourists for its dragons and lagoons. In reality, the giant Komodo dragons are the last witnesses of prehistory but huge lizards, impressive, photogenic and sometimes dangerous.An ideal place to indulge in a singular form of adventure tourism, although it is now more mass than niche. Between a seaside beach and a leisurely mini cruise, tens of thousands of annual tourists come to approach these funny dragons that scare as they fascinate visitors. Also, walkers, swimmers and hikers cross - time for a well supported thrill, it is true in a dream setting - in this national park, all driven by the same desire and curiosity to "see for real" this creature strange that stimulates our imagination filled with dinosaurs.
Indonésie
Komodo
Bali

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7577
http://journals.openedition.org/etudescaribeennes/7577

Éditeur(s) : HAL CCSD Elsevier
Résumé : The variability of fluvial activity in the Northwestern Mediterranean coastal lowlands and its relationship with modes of climate change were analysed from the late 9th to the 18th centuries CE. Geochemical analyses were undertaken from a lagoonal sequence and surrounding sediments in order to track the fluvial inputs into the lagoon. An index based on the K/S and Rb/S ratios was used to evidence the main periods of fluvial activity. This index reveals that the Medieval Climate Anomaly (MCA) was a drier period characterized by a lower fluvial activity, while the Little Ice Age (LIA) was a wetter period with an increase of the river dynamics. Three periods of higher than average fluvial activity were evidenced at the end of the first millennium CE (ca. 900–950 cal yr CE), in the first half of the second millennium CE (ca. 1150–1550 cal yr CE), and during the 1600s–1700s CE (ca. 1650–1800 cal yr CE). The comparison of these fluvial periods with other records of riverine or lacustrine floods in Spain, Italy, and South of France seems to indicate a general increase in fluvial and flood patterns in the Northwestern Mediterranean in response to the climate change from the MCA to the LIA, although some episodes of flooding are not found in all records. Besides, the phases of higher than average fluvial dynamics are in good agreement with the North Atlantic cold events evidenced from records of ice-rafted debris. The evolution of fluvial activity in the Northwestern Mediterranean coastlands during the last millennium could have been driven by atmospheric and oceanic circulation patterns.Keywords
ISSN: 0921-8181

hal-01571958
https://hal.archives-ouvertes.fr/hal-01571958
DOI : 10.1016/j.gloplacha.2017.03.008

Éditeur(s) : HAL CCSD
Résumé : At present, the forecasting of littoral evolution presents a considerable social stake. Many studies have been achieved to better understand coastal dynamics. Such dynamics are controlled by morphology, sediment supply, hydrodynamics, eustacy... at different time scales. At geological time scale, deposits geometry, controlled by eustacy and subsidence, is succesfully analysed where sediment supply is high. But the littoral zones present important sediment supply variability. In low sediment supply areas, the record of coastal tracts is smaller and harder to interprete. Analyses of about 250 kilometres of new VHR seismic profiles acquired along the languedocian coast (Northern Gulf of Lion, France), tens of short cores and outcrops data allowed us to determine the three-dimensional high-resolution geometry of the coastal tracts from Quaternary to present-day. This highlighted the role of alongshore dynamics in coast where direct sediment supply is low. The concepts of protected lagoon and isolated lagoon were broughted to the fore and the effect of inherited incised valley morphology was discussed. Last, a complementary study by analogue modeling of the channel incision processes controled by eustatic and climatic changes allowed to discuss the role of incised valleys in coastal areas.
Actuellement, la prévision de l'évolution d'un système littoral représente un enjeu social important. De nombreuses études sont réalisées afin de mieux connaitre la dynamique côtière et donc de comprendre les facteurs qui influencent son évolution. Cette dynamique est contrôlée par la morphologie, les apports sédimentaires, l'hydrodynamique, l'eustatisme... qui agissent à des échelles de temps différentes et avec de fortes interactions. A l'échelle géologique, l'architecture des dépôts, contrôlée par l'eustatisme et la subsidence, est parfaitement décrite dans les zones à forts apports sédimentaires. Par contre, dans les zones à faibles apports sédimentaires, l'enregistrement des cortèges côtiers est réduit et est difficile à interpréter. L'analyse de 250 kilomètres de profils sismiques THR sur le littoral languedocien (Nord du Golfe du Lion, France), de carottages et de données de terrain a permis de déterminer la géométrie en trois dimensions des cortèges sédimentaires côtiers depuis le Quaternaire jusqu'à l'actuel. Ces observations montrent l'importance de la dynamique longshore sur les littoraux pauvres en apports sédimentaires directs. De plus, l'étude d'un système lagunaire sur ce littoral met en évidence les concepts de lagunes protégées et lagunes isolées ainsi que l'importance des vallées incisées dans la génèse de ces environnements. Enfin, la modélisation en laboratoire des processus d'incision de chenaux sous contrôle eustatique et climatique permet de discuter le rôle des vallées incisées en milieu côtier.
https://tel.archives-ouvertes.fr/tel-00542897

tel-00542897
https://tel.archives-ouvertes.fr/tel-00542897
https://tel.archives-ouvertes.fr/tel-00542897/document
https://tel.archives-ouvertes.fr/tel-00542897/file/theseraynaldef.pdf

Éditeur(s) : HAL CCSD
Résumé : Satellite and in situ chlorophyll concentration data collected as part of VALidation HYperspectral of a BIOgeochemical model (ValHyBio), a PNTS-sponsored project dedicated to satellite ocean-colour imaging of the Southwest Pacific, are analyzed to describe chlorophyll variability in the Coral Sea, a vast oligotrophic region characterized by a deep chlorophyll maximum and blue waters of high transparency. Average chlorophyll concentrations estimated from MODIS-Aqua are very low (<0.2 mg m-3) except in the vicinity of main islands and coral reefs, where enrichment may occur due to upwelling or internal waves that bring nutrients to the euphotic zone from the deep part of the water column. During the summer season, blooms of cyanobacteria (Trichodesmium) develop in the surface waters and may form large slicks. The nitrogen fixed by these slicks is a potential source of new nitrogen later assimilated by picoplankton and the marine food chain. Coastal areas exhibit higher chlorophyll concentrations because of nutrient input from the land, as observed in 2008 around New Caledonia. In lagoon areas, the sea colour is influenced by turbidity and bathymetry, and the MODIS OC3 algorithm is inadequate, with a systematic overestimation of chlorophyll concentration in the New Caledonia lagoon. Improved bio-optical algorithms are needed for those turbid and shallow waters, to allow not only a better description of chlorophyll variability, but also evaluation of chlorophyll simulations by recently developed biogeochemical models.
of the 12th International Coral Reef Symposium, 18E
CAIRNS, Australia

hal-00746470
https://hal.archives-ouvertes.fr/hal-00746470
https://hal.archives-ouvertes.fr/hal-00746470/document

Éditeur(s) : Mdpi Ag
Résumé : Marine pelagic diazotrophic cyanobacteria of the genus Trichodesmium (Oscillatoriales) are widespread throughout the tropics and subtropics, and are particularly common in the waters of New Caledonia. Blooms of Trichodesmium are suspected to be a potential source of toxins in the ciguatera food chain and were previously reported to contain several types of paralyzing toxins. The toxicity of water-soluble extracts of Trichodesmium spp. were analyzed by mouse bioassay and Neuroblastoma assay and their toxic compounds characterized using liquid chromatography coupled with tandem mass spectrometry techniques. Here, we report the first identification of palytoxin and one of its derivatives, 42-hydroxy-palytoxin, in field samples of Trichodesmium collected in the New Caledonian lagoon. The possible role played by Trichodesmium blooms in the development of clupeotoxism, this human intoxication following the ingestion of plankton-eating fish and classically associated with Ostreopsis blooms, is also discussed.
Marine Drugs (1660-3397) (Mdpi Ag), 2011-04 , Vol. 9 , N. 4 , P. 543-560

Droits : 2011 MDPI Publishing
http://archimer.ifremer.fr/doc/00040/15143/12576.pdf
DOI:10.3390/md9040543
http://archimer.ifremer.fr/doc/00040/15143/

Éditeur(s) : HAL CCSD
Résumé : International audience
This study was designed to identify in the pearl oyster Pinctada margaritifera, used as a bio-accumulator, molecular biomarkers for the presence of heavy metals in the lagoon environment. Pearl oysters were exposed to 2 concentrations (1 and 10 μg L− 1) of cadmium (Cd) and chromium (Cr) compared to a control. Twelve target genes encoding proteins potentially involved in the response to heavy metal contamination with antioxidant, detoxification or apoptosis activities were selected. P. margaritifera accumulated Cd but not Cr, and mortality was related to the amount of Cd accumulated in tissues. In response to Cd-Cr contamination, metallothionein (MT) was significantly up-regulated by Cd-Cr at both concentrations, while 7 others (SOD, CAT, GPX, GSTO, GSTM, CASP, MDR) were down-regulated. Based on the development of these molecular tools, we propose that the pearl oyster, P. margaritifera, could be used as a sentinel species for heavy metal contamination in the lagoons of tropical ecosystems.
. Marine Pollution Bulletin

hal-01526382
https://hal.archives-ouvertes.fr/hal-01526382
DOI : 10.1016/j.marpolbul.2017.03.012
PUBMED : 28320509

Éditeur(s) : Elsevier Science Bv
Résumé : In bivalve aquaculture, dominant fouling organisms are filter feeders which can compete for food with reared bivalves, sometimes causing mortality or reducing their growth rate. This study investigated the effect of biofouling on the farmed pearl oyster Pinctada margaritifera in two lagoons of French Polynesia. Survival, growth and reproduction of 2 year-old pearl oysters were monitored with regular sampling schedules, from the initial stage of colonization up to 20 months of biofouling accumulation. Control groups of pearl oysters were kept free of biofouling as is the current practice in pearl farms. After more than a year of monitoring, no significant difference was recorded in shell growth rate between pearl oysters reared with epibionts and the control group of pearl oysters, at both sites. Mean annual shell growth rate (height) was 30.5 ± 9.2 mm in Tahiti and 24.8 ± 7.7 mm in Mangareva. Neither the survival nor the reproduction indices were negatively affected by biofouling. In Mangareva, where biofouling development was quantified during 1 year, the rate of colonization appeared to be high during the first 3 months before slowing down. These results raise questions about the necessity of removing biofouling at this stage of pearl oyster production (i.e. before grafting).
Aquaculture (0044-8486) (Elsevier Science Bv), 2014-10 , Vol. 434 , P. 18-26

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00201/31188/29587.pdf
DOI:10.1016/j.aquaculture.2014.07.012
http://archimer.ifremer.fr/doc/00201/31188/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
New investigations in the Neogene Boudinar basin (Morocco) provide new information about the Messinian Salinity Crisis (MSC) and Zanclean reflooding in the southern part of the Alboran realm (westernmost Mediterranean). Based on a new field, sedimentological and palaeontological analyses, the age and the geometry of both the Messinian erosional surface (MES) and the overlying deposits have been determined. The MES is of late Messinian age and was emplaced in subaerial settings. In the Boudinar basin, a maximum of 200 m of Miocene sediments was eroded, including late Messinian gypsum blocks. The original geometry of the MES is preserved only when it is overlain by late Messinian continental deposits, conglomeratic alluvial fans or lacustrine marly sediments. These sediments are interpreted as indicators of the sea-level fall during the MSC. Elsewhere in the basin, the contact between late Messinian and early Pliocene deposits is a low-angle dipping, smooth surface that corresponds to the early Pliocene transgression surface that subsequently re-shaped the regressive MES. The early Pliocene deposits are characterized by: (i) their onlap onto either the basement of the Rif chain or the late Miocene deposits; (ii) lagoonal deposits at the base to offshore marls and sands at the top (earliest Pliocene; 5.33–5.04 Ma interval; foraminifer zone PL1); (iii) marine recovery occurring in the 5.32–5.26 Ma interval; and (iv) the change from lagoonal to offshore environments occurring within deposits tens of metres thick. This information indicates that at least the end of the reflooding period was progressive, not catastrophic as previously thought.
ISSN: 0037-0738

hal-01306672
https://hal.archives-ouvertes.fr/hal-01306672
DOI : 10.1016/j.sedgeo.2015.12.014

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The distribution of the lagoon cockle Cerastoderma glaucum is strongly fragmented and usually restricted to isolated, shallow and nontidal lagoons. A high level of genetic structuring was found among the European populations of this species based on mtDNA (COI) sequences, as well as allozymic and microsatellite markers. However, the strengths and geographic locations of the major divisions differed among markers. In the present study we characterized the diversity of a new, potentially universal exon-primed intron-crossing marker, i34, for 17 C. glaucum populations. Allele frequency data at the i34 locus were informative and relevant with respect to geography. Multivariate analyses of new data together with previously published microsatellites confirmed the divergent character of the Ionian Sea and the Aegean-Ponto-Caspian populations, but also revealed the existence of a genetic cline from the Bay of Biscay to the Baltic Sea. Some noncongruent patterns among loci were detected, which may reflect either differential introgression along the genome at the hypothetical contact zone, or selective sweeps. This strong genetic differentiation, and the occurrence of private alleles, may hint at the presence of cryptic species within C. glaucum.
ISSN: 0260-1230

hal-01444646
https://hal.archives-ouvertes.fr/hal-01444646
DOI : 10.1093/mollus/eyw019

Éditeur(s) : Public Library Science
Résumé : Observing spatial and temporal variations of marine biodiversity from non-destructive techniques is central for understanding ecosystem resilience, and for monitoring and assessing conservation strategies, e.g. Marine Protected Areas. Observations are generally obtained through Underwater Visual Censuses (UVC) conducted by divers. The problems inherent to the presence of divers have been discussed in several papers. Video techniques are increasingly used for observing underwater macrofauna and habitat. Most video techniques that do not need the presence of a diver use baited remote systems. In this paper, we present an original video technique which relies on a remote unbaited rotating remote system including a high definition camera. The system is set on the sea floor to record images. These are then analysed at the office to quantify biotic and abiotic sea bottom cover, and to identify and count fish species and other species like marine turtles. The technique was extensively tested in a highly diversified coral reef ecosystem in the South Lagoon of New Caledonia, based on a protocol covering both protected and unprotected areas in major lagoon habitats. The technique enabled to detect and identify a large number of species, and in particular fished species, which were not disturbed by the system. Habitat could easily be investigated through the images. A large number of observations could be carried out per day at sea. This study showed the strong potential of this non obtrusive technique for observing both macrofauna and habitat. It offers a unique spatial coverage and can be implemented at sea at a reasonable cost by non-expert staff. As such, this technique is particularly interesting for investigating and monitoring coastal biodiversity in the light of current conservation challenges and increasing monitoring needs.
Plos One (1932-6203) (Public Library Science), 2012-02 , Vol. 7 , N. 2 , P. -

Droits : 2012 Pelletier et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License
http://archimer.ifremer.fr/doc/00078/18879/16453.pdf
DOI:10.1371/journal.pone.0030536
http://archimer.ifremer.fr/doc/00078/18879/