Éditeur(s) : HAL CCSD
Résumé : Satellite and in situ chlorophyll concentration data collected as part of VALidation HYperspectral of a BIOgeochemical model (ValHyBio), a PNTS-sponsored project dedicated to satellite ocean-colour imaging of the Southwest Pacific, are analyzed to describe chlorophyll variability in the Coral Sea, a vast oligotrophic region characterized by a deep chlorophyll maximum and blue waters of high transparency. Average chlorophyll concentrations estimated from MODIS-Aqua are very low (<0.2 mg m-3) except in the vicinity of main islands and coral reefs, where enrichment may occur due to upwelling or internal waves that bring nutrients to the euphotic zone from the deep part of the water column. During the summer season, blooms of cyanobacteria (Trichodesmium) develop in the surface waters and may form large slicks. The nitrogen fixed by these slicks is a potential source of new nitrogen later assimilated by picoplankton and the marine food chain. Coastal areas exhibit higher chlorophyll concentrations because of nutrient input from the land, as observed in 2008 around New Caledonia. In lagoon areas, the sea colour is influenced by turbidity and bathymetry, and the MODIS OC3 algorithm is inadequate, with a systematic overestimation of chlorophyll concentration in the New Caledonia lagoon. Improved bio-optical algorithms are needed for those turbid and shallow waters, to allow not only a better description of chlorophyll variability, but also evaluation of chlorophyll simulations by recently developed biogeochemical models.
of the 12th International Coral Reef Symposium, 18E
CAIRNS, Australia

hal-00746470
https://hal.archives-ouvertes.fr/hal-00746470
https://hal.archives-ouvertes.fr/hal-00746470/document

Éditeur(s) : Gauthier-Villars
Résumé : An experimental techniques to estimate the influence of dissolved organic matter (DOM) on remote sensing of chlorophyll in water has been developed, based on the relationship between fluorescence and absorption of light by a substance. The profiles of fluorescence, chlorophyll content in sea water and estimates of light attenuation in water samples were used in the paper. These data have permitted to calculate the regressions linking fluorescence and light absorption at 450 nm by chlorophyll (ABC450) and by DOM (ABD450). The remote sensing needs no correction for DOM if M450 = 100* (ABC450/ABD450) much greater than 100. This technique has been applied to data collected during the international Skagex field experiment in the straits of Skagerrak and Kattegat in spring and autumn of 1990. It was found that M450 <= 100 everywhere in the subsurface layer. Unfavorable conditions for remote sensing of chlorophyll prevailed in the straits because of the uptake of DOM-rich water from the continent and the accumulation of phytoplankton in deeper layers. These and another processes can increase relative content of colored DOM even in waters of open ocean.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1992 , Vol. 15 , N. 3 , P. 255-259

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00100/21159/18778.pdf
http://archimer.ifremer.fr/doc/00100/21159/

Éditeur(s) : HAL CCSD Oldendorf/Luhe
Résumé : International audience
Non-calcifying photosynthetic anthozoans have emerged as a group that may thrive under high carbon dioxide partial pressure (pCO(2)) conditions via increased productivity. However, the physiological mechanisms underlying this potential success are unclear. Here we investigated the impact of high pCO(2) on the dissolved inorganic carbon (DIC) use in the temperate sea anemone Anemonia viridis. We assessed the impacts of long-term exposure to high pCO(2), i.e. sampling in situ natural CO2 vents (Vulcano, Italy), and short-term exposure, i.e. during a 3 wk controlled laboratory experiment. We focused on photo-physiological parameters (net photosynthesis rates, chlorophyll a content and Symbiodinium density) and on carbonic anhydrase (CA) activity, an enzyme involved in the energy-demanding process of DIC absorption. Long-term exposure to high pCO(2) had no impact on Symbiodinium density and chlorophyll a content. In contrst, short-term exposure to high pCO(2) induced a significant reduction in Symbiodinium density, which together with unchanged net photosynthesis resulted in the increase of Symbiodinium productivity per cell. Finally, in both in situ long-term and laboratory short-term exposure to high pCO(2), we observed a significant decrease in the CA activity of sea anemones, suggesting a change in DIC use (i.e. from an HCO3- to a CO2 user). This change could enable a shift in the energy budget that may increase the ability of non-calcifying photosynthetic anthozoans to cope with ocean acidification.
ISSN: 0171-8630

hal-01546163
https://hal.archives-ouvertes.fr/hal-01546163
DOI : 10.3354/meps11916

Éditeur(s) : Elsevier
Résumé : In biological modelling of the coastal phytoplankton dynamics, the light attenuation coefficient is often expressed as a function of the concentrations of chlorophyll and mineral suspended particulate matter (SPM). In order to estimate the relationship between these parameters over the continental shelf of the northern Bay of Biscay, a set of in situ data has been gathered for the period 1998-2003 when SeaWiFS imagery is available. These data comprise surface measurements of the concentrations of total SPM, chlorophyll, and irradiance profiles from which is derived the attenuation coefficient of the photosynthetically available radiation, K-PAR. The performance of the IFREMER look-up table used to retrieve the chlorophyll concentration from the SeaWiFS radiance is evaluated on this new set of data. The quality of the estimated chlorophyll concentration is assessed from a comparison of the variograms of the in situ and satellite-derived chlorophyll concentrations. Once the chlorophyll concentration is determined, the non living SPM, which is defined as the SPM not related to the dead or alive endogenous phytoplankton, is estimated from the radiance at 555 nm by inverting a semi-analytic model. This method provides realistic estimations of concentrations of chlorophyll and SPM over the continental shelf all over the year. Finally, a relationship, based on non living SPM and chlorophyll, is proposed to estimate K-PAR on the continental shelf of the Bay of Biscay. The same formula is applied to non living SPM and chlorophyll concentrations, observed in situ or derived from SeaWiFS radiance.
Remote Sensing of Environment (0034-4257) (Elsevier), 2005-03 , Vol. 95 , N. 1 , P. 29-46

Droits : 2004 Elsevier Inc. All rights reserved
http://archimer.ifremer.fr/doc/2005/publication-1172.pdf
DOI:10.1016/j.rse.2004.11.007
http://archimer.ifremer.fr/doc/00000/1172/

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Chlorophyll meters such as the SPAD-502 offer a simple, inexpensive and rapid method to estimate foliar chlorophyll content. However, values provided by SPAD-502 are unitless and require empirical calibrations between SPAD units and extracted chlorophyll values. * Leaves of 13 tree species from the tropical rain forest in French Guiana were sampled to select the most appropriate calibration model among the often-used linear, polynomial and exponential models, in addition to a novel homographic model that has a natural asymptote.* The homographic model best accurately predicted total chlorophyll content (μg cm−2) from SPAD units (R2 = 0.89). Interspecific differences in the homographic model parameters explain less than 7% of the variation in chlorophyll content in our data set. * The utility of the general homographic model for a variety of research and management applications clearly outweighs the slight loss of model accuracy due to the abandon of the species' effect.
ISSN: 1286-4560

Droits : info:eu-repo/semantics/OpenAccess
hal-00883628
https://hal.archives-ouvertes.fr/hal-00883628
https://hal.archives-ouvertes.fr/hal-00883628/document
https://hal.archives-ouvertes.fr/hal-00883628/file/hal-00883628.pdf
DOI : 10.1051/forest/2010020

Éditeur(s) : Elsevier
Résumé : A coupled three-dimensional physical-biogeochemical model was developed in order to simulate the ecological functioning of the Rio de la Plata estuary and plume. The biogeochemical model reproduces the nitrogen cycle between five compartments: dissolved inorganic nitrogen, phytoplankton, zooplankton, detritus and dissolved organic nitrogen. The coupling is tested in seasonal climatological configurations and for the particular year 1999. The circulation is forced with Parana and Uruguay rivers discharges, NCEP wind and tide. The biogeochemical model includes loads of inorganic and organic nitrogen from both rivers. The model reproduces the correct tidal amplitudes in the estuary, as well as the most outstanding features of the observed horizontal and vertical structures of the salinity plume. Simulated surface chlorophyll a concentrations exhibit maximum values all year long seaward of the turbidity front, between the 0.5 and 15 isohalines, in agreement with SeaWiFS images of the area. The model simulates well the low primary production in the light-limited highly turbid tidal river (20 gC/m(2)/yr), the high production area in the frontal zone where it can reach 500 gC/m(2)/yr, and the nutrient-limited production in the outer estuary and inner shelf (300 gC/m(2)/yr), with realistic values in each case. According to the 1999 model simulation, the tidal river is the location of organic nitrogen remineralization with a consequent increase of the inorganic pool. At the entrance of the frontal zone, inorganic nitrogen represents about 75% of the whole nitrogen pool, it is reduced to 50% at its sea end-member. The outer estuary has the same sink role for inorganic nitrogen, suggesting that organic nitrogen is the major form exported to the shelf.
Continental Shelf Research (0278-4343) (Elsevier), 2005-03 , Vol. 25 , N. 5-6 , P. 629-653

Droits : 2004 Elsevier Ltd.
http://archimer.ifremer.fr/doc/2005/publication-334.pdf
DOI:10.1016/j.csr.2004.10.003
http://archimer.ifremer.fr/doc/00000/334/

Éditeur(s) : HAL CCSD
Résumé : Diffusion du document : INRA Antilles-Guyane, UMR ECOFOG, 97387 Kourou, Guyane (France)
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Le SPAD-502 est un chlorophylle mètre portatif mesurant la transmittance de la feuille. Contrairement aux méthodes traditionnelles, cet outil est non destructif et les données sont obtenues de façon quasi instantanée. Il est cependant nécessaire d'établir au préalable des courbes de corrélation entre le taux de chlorophylle et la valeur donnée par le SPAD, et ce pour chaque espèce. L'objectif de cette étude était d'établir ces courbes étalons pour 14 espèces de forêt tropicale humide. Il a été montré que la corrélation entre ces deux variables est forte et que le SPAD-502 constitue un bon outil pour réaliser des mesures de taux de chlorophylle sur une grande échelle. L'étude a mis en évidence l'existence de certains problèmes liés à l'utilisation du SPAD. En particulier, chaque courbe étalon n’est a priori valable que pour une seule espèce. L’étude a toutefois démontré que certains regroupements sont possibles, permettant de n'utiliser qu’une courbe pour plusieurs espèces différentes. Les courbes établies ont d’ores et déjà été utilisées dans le cadre d'une étude concernant l'azote alloué par la plante aux différentes étapes de la photosynthèse. Ces travaux préliminaires ont mis en évidence la variabilité inter spécifique des allocations d’azote, suggérant une différence de stratégie entre les espèces.
https://hal.archives-ouvertes.fr/hal-01189250

hal-01189250
https://hal.archives-ouvertes.fr/hal-01189250
PRODINRA : 19531

Éditeur(s) : HAL CCSD Nordic Ecological Society
Résumé : Niche differentiation and ecological filtering are primary ecological processes that shape community assembly, but their relative importance remains poorly understood. Analyses of the distributions of functional traits can provide insight into the community structure generated by these processes. We predicted the trait distributions expected under the ecological processes of niche differentiation and environmental filtering, then tested these predictions with a dataset of 4672 trees located in nine 1-ha plots of tropical rain forest in French Guiana. Five traits related to leaf function (foliar N concentration, chlorophyll content, toughness, tissue density and specific leaf area), and three traits related to stem function (trunk sapwood density, branch sapwood density, and trunk bark thickness), as well as laminar surface area, were measured on every individual tree. There was far more evidence for environmental filtering than for niche differentiation in these forests. Furthermore, we contrasted results from species-mean and individual-level trait values. Analyses that took within-species trait variation into account were far more sensitive indicators of niche differentiation and ecological filtering. Species-mean analyses, by contrast, may underestimate the effects of ecological processes on community assembly. Environmental filtering appeared somewhat more intense on leaf traits than on stem traits, whereas niche differentiation affected neither strongly. By accounting for within-species trait variation, we were able to more properly consider the ecological interactions among individual trees and between individual trees and their environment. In so doing, our results suggest that the ecological processes of niche differentiation and environmental filtering may be more pervasive than previously believed.
ISSN: 0030-1299

hal-01032397
https://hal.archives-ouvertes.fr/hal-01032397
DOI : 10.1111/j.1600-0706.2010.19110.x

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Regeneration of artificially induced lesions was monitored in nubbins of the branching coral Acropora muricata at two reef-flat sites representing contrasting environments at Réunion Island (21u079S, 55u329E). Growth of these injured nubbins was examined in parallel, and compared to controls. Biochemical compositions of the holobiont and the zooxanthellae density were determined at the onset of the experiment, and the photosynthetic efficiency (F v /F m) of zooxanthellae was monitored during the experiment. Acropora muricata rapidly regenerated small lesions, but regeneration rates significantly differed between sites. At the sheltered site characterized by high temperatures, temperature variations, and irradiance levels, regeneration took 192 days on average. At the exposed site, characterized by steadier temperatures and lower irradiation, nubbins demonstrated fast lesion repair (81 days), slower growth, lower zooxanthellae density, chlorophyll a concentration and lipid content than at the former site. A trade-off between growth and regeneration rates was evident here. High growth rates seem to impair regeneration capacity. We show that environmental conditions conducive to high zooxanthellae densities in corals are related to fast skeletal growth but also to reduced lesion regeneration rates. We hypothesize that a lowered regenerative capacity may be related to limited availability of energetic and cellular resources, consequences of coral holobionts operating at high levels of photosynthesis and associated growth.
ISSN: 1932-6203

hal-01369712
http://hal.univ-reunion.fr/hal-01369712
http://hal.univ-reunion.fr/hal-01369712/document
http://hal.univ-reunion.fr/hal-01369712/file/journal.pone.0072618.PDF
DOI : 10.1371/journal.pone.0072618

Éditeur(s) : IEEE
Résumé : Two approaches of ocean color data merging were tested and compared in the North and Equatorial Atlantic Basin: the weighted averaging and the objective analysis. The datasets used were the daily level-3 binned data of chlorophyll-a from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) and Moderate Resolution Imaging Spectroradiometer on the Aqua satellite over the year 2003, which is the first common full year of operation. Since they represent input for both approaches, matchups between the satellite and the in situ data from the SeaWiFS Bio-optical Archive and Storage System and the Atlantic Meridional Transect were first studied to compute a spatial map of the root mean-square error and of the bias. Because of the log distribution of the chlorophyll fields, each approach was applied to untransformed and log-transformed values. The application of the weighted averaging to log-transformed values does not show significant differences in comparison to its application to untransformed values. This is not the case, however, for the objective analysis that gives better results when applied to logtransformed values. Both approaches give combined chlorophyll data of equivalent quality, although the objective analysis could be improved with a better statistical characterization of noise and signal covariance. The main advantage of the objective analysis is its ability to interpolate in space (and time) by taking into account the characteristic scales of chlorophyll-a. As a result, the spatial coverage of the combined data is at least twice as large in the case of objective analysis than weighted averaging. OCR NOT CONTROLLED
IEEE (0196-2892) (IEEE), 2006-11 , Vol. 44 , N. 11 , P. 3436-3451

Droits : 2006 IEEE
http://archimer.ifremer.fr/doc/2006/publication-3631.pdf
DOI:10.1109/TGRS.2006.878441
http://archimer.ifremer.fr/doc/00000/3631/

Éditeur(s) : Gauthier-Villars
Résumé : Long tropical instability waves are described at around 3-4 degrees N based on results of a simulation performed with a general circulation model for the Atlantic Ocean. This description is in agreement with earlier observations of organized undulations of the summer thermal front associated with anti-cyclonic eddies propagating westward at 30-40 km/day along 3-4 degrees N from 10 to 40 degrees W through the Atlantic basin. However, the simulation indicated the presence of long waves in early boreal winter. In this respect, satellite observations during short cold events in winter show thermal front undulations similar to those associated with long wave propagations. The simulation clearly demonstrated large vertical movements between the surface and a depth of 70 m, associated with anti-cyclonic eddies at around 3 degrees N. These vertical movements could commonly reach the thermocline in the central part of the Atlantic basin (10-20 degrees W). In this region, long instability waves could subsequently affect biological production by ''eddy pumping''. During the PIRAL cruise at 4 degrees N-20 degrees W in June 1986, remarkably high chlorophyll concentrations (the highest values in our data bank for the equatorial Atlantic and typical of a very productive zone) were associated with currents similar to those of an anticyclonic eddy and characterized by a surface temperature distribution typical of the long instability wave pattern. These high chlorophyll concentrations may have resulted from ''eddy pumping'' and/or strong meridian advection since each of these mechanisms is associated with long instability waves.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 6 , P. 585-596

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21034/18660.pdf
http://archimer.ifremer.fr/doc/00099/21034/

Éditeur(s) : University of West Indies, Barbados Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Practical uses for Sargassum are sought regionally as our coastlines continue to be flooded by sargassum blooms floating ashore. This study investigated the potential benefits of Sargassum (Sargassum spp.) mulch in sweet potato production at Golden Ridge, St. George, Barbados, during a drought period (November 2015-March 2016). Treatment consisted of combinations of two cultivars of sweet potato (?E? and ?CBS 32?, main-plots) and washed/unwashed Sargassum mulches (sub-plots) of different ages (approximately 4 weeks old and fresh, sub-sub-plots) with four replications. Sargassum mulch was applied to the furrows of plots (6m2) four weeks after planting at a rate of 10 t ha-1 and yield, growth and soil parameters were monitored at periodic intervals. Yield (t ha-1) was highest for the 4-weeks old Sargassum mulch treatment, and the number of marketable tubers was highest for the unwashed 4-weeks old Sargassum treatment. The number of tubers with Euscepes postfaciatus (Scarabee) pest damage was decreased by the Sargassum mulch treatments especially for the 4-weeks old unwashed Sargassum. Vine growth was taller for cultivar ?E? and for the washed Sargassum treatments. Chlorophyll indices were higher in ?CBS 32? than in cultivar ?E? and were lower in Sargassum treated plots. Moisture content in the top 10cm of soil was consistently low and greater in plots of cultivar ?E? than in those of ?CBS 32?. There appears to be some potential for the use of aged Sargassum mulches for improving growth, pest management and yields of sweet potato and further investigations are needed.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16270
V16270

Éditeur(s) : Elsevier Science Bv
Résumé : During the Echolag cruise (13 February-8 March 2007), the effect of 16-30 knot trade winds on abundance, community structure and dynamics of phytoplankton was investigated in the southern part of the New Caledonian coral reefs and surrounding oceanic waters. In this area, the coral reefs form two horn-like structures (hereinafter referred to as 'horn reefs'), oriented south-east, and separated by a relatively deep valley. Three repeated samplings at one week intervals of a 32 station array showed that trade winds induce surface water cooling and significant enrichment of mid- and bottom waters above the reef shelf. This enrichment appeared as the result of a general rise of the oceanic thermocline and nitracline due to the combination of trade winds and tidally-generated internal waves between the horn reefs. It was accompanied by a factor of 1.5 and 2.3 mean increase for the chlorophyll concentration and picoplankton-nanoplankton cell number, respectively. From diel variations of in vivo chlorophyll a fluorescence and hourly sampling, phytoplankton gross growth rate was estimated to be 1-1.35 divisions per day and was quasi balanced with phytoplankton mortality for a 24 h period.
Journal Of Marine Systems (0924-7963) (Elsevier Science Bv), 2010-09 , Vol. 82 , N. 4 , P. 230-244

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00013/12437/9258.pdf
DOI:10.1016/j.jmarsys.2010.05.010
http://archimer.ifremer.fr/doc/00013/12437/

Éditeur(s) : Université de Bretagne Occidentale
Résumé : Study of mineral suspended particulate matter (SPM) is essential to understand ecosystem dynamics. SPM influences light penetration which is closely related to primary production and carries pollutants and nutrients within the water masses. This work aims to study near-surface mineral SPM dynamics in the English Channel using two complementary methods: remote-sensing by satellites and numerical modelling. Firstly, MODIS and MERIS satellite images processed by the IFREMER semi-analytical algorithm and describing non-algal SPM, are analysed to build three statistical models which are able to estimate near-surface SPM using simple variables, e.g., tidal coefficient, significant wave height and mean chlorophyll-a concentration. Secondly, the three-dimensional hydrosedimentary model ROMS (Regional Ocean Modeling System) is applied in the English Channel. It considers tidal forcing along open boundaries, wind stress at the sea-surface, wave-current interactions in the bottom boundary layer and realistic heterogeneous bottom sediments. Results of the more sophisticated statistical model is also used to impose SPM concentrations at open boundaries. Sensitivity tests on SPM boundary conditions show the importance of prescribing realistic sediment concentrations to improve the model predictions. Biological influences on mineral SPM are also tested using settling velocity and critical shear stress for erosion which vary with seasons. Both statistical and numerical models highlight and locate respective influences of tide, waves and biology on mineral SPM. Numerical predictions indicate that near-surface SPM is mainly composed of silts (>70%). Near-surface suspended silts come largely from seabed resuspension alongshore in the Eastern Channel and from the open boundaries of our limited-area coastal model at the West of Cotentin Peninsula and offshore. Near-surface SPM variations are investigated at semi-diurnal, neap-spring tidal cycle time scales and during a wave event. Finally, dynamics of sediments in the turbidity maximum zone around the Isle of Wight is examined depending on hydrodynamical conditions in order to distinguish the role played by advection and local erosion/settling processes in this area. Keywords: Suspended particulate matter, satellite, remote-sensing, modelling, English Channel, sediments, turbidity, tide, wave
L'étude des matières en suspension (MES) minérales est essentielle pour comprendre le fonctionnement des écosystèmes en Manche : les MES influencent la pénétration de la lumière dans la colonne d'eau, paramètre clé pour la production biologique, et sont susceptibles de transporter des polluants et nutriments. Lors de ce travail, la dynamique des MES minérales de surface en Manche est étudiée à l'aide de deux méthodes complémentaires : l'observation par satellite et la modélisation numérique tridimensionnelle. Dans un premier temps, les images satellite MODIS et MERIS, traitées par l'algorithme semi-analytique développé par l'IFREMER et représentant les MES non-algales de surface, sont analysées afin d'élaborer trois modèles statistiques permettant d'estimer la MES de surface en fonction de variables basiques telles que le coefficient de marée, la hauteur significative des vagues et la concentration moyenne en chlorophylle-a. Dans un deuxième temps, le modèle hydrosédimentaire multiclasse tridimensionnel ROMS (Regional Ocean Modeling System) est implémenté en Manche. Il prend en considération le forçage par la marée aux frontières ouvertes, la contrainte exercée par le vent à la surface de la mer, l'interaction houle-courant en couche limite de fond et l’hétérogénéité spatiale réaliste du lit sédimentaire. Les résultats du modèle statistique le plus sophistiqué sont également utilisés pour forcer la concentration en MES aux frontières ouvertes du domaine de calcul. Des tests de sensibilité sur les conditions limites montrent l'importance de considérer de manière réaliste les sédiments entrant en Manche par les frontières ouvertes lors de la modélisation numérique. L'influence de la biologie sur les MES minérales est testée en utilisant une formulation de la vitesse de chute et de la contrainte critique d'érosion variant saisonnièrement. Grâce à ces deux outils associés, les influences respectives de la marée, de la houle et de la biologie sur les MES minérales sont mises en avant et localisées en Manche. Le modèle numérique prédit que les MES de surface sont composées principalement de silts (>70%). Les silts en suspension en surface proviennent majoritairement du lit sédimentaire près des côtes en Manche orientale et des frontières ouvertes du domaine de calcul à l'ouest de la presqu'île du Cotentin et au large en Manche centrale et orientale. Les variations des MES de surface sont ensuite étudiées aux échelles des cycles de marée semi-diurnes, vive-eau/morte-eau et autour d'un épisode de houles. Enfin, l'évolution de la concentration de sédiments dans la zone de forte turbidité autour de l'île de Wight peut être analysée suivant les conditions hydrodynamiques afin d'évaluer les rôles respectifs des processus locaux d'érosion/dépot et d'advection dans la génération de ces turbidités remarquables. Mots-clés : Matière en suspension, télédétection, satellite, modélisation, Manche, sédiments, turbidité, marée, houle

Droits : 2013 UBO
http://archimer.ifremer.fr/doc/00157/26783/24884.pdf
http://archimer.ifremer.fr/doc/00157/26783/

Éditeur(s) : Gauthier-Villars
Résumé : Four planktonic coastal ecosystems from the western Channel to the southern part of the North Sea have been compared. The characteristics of the south of the North Sea are a very high planktonic biomass with an annual maximum value of 45 mg C m-3 h-1 for primary production, a maximum of 11 mg m-3 for Chlorophyll a and 60 mg C m-3 for zooplanktonic biomass (expressed in term of carbon weight), linked with an oscillating ecosystem. In the western Channel primary production shows an annual maximum value of 8 mg C m-3 h-1, die chlorophyll a, a maximum of 2.5 mg m-3 and zooplanktonic carbon weight of 14 mg C m-3 linked to a greater inertia in the system. Turnover is faster in the north. Trophic efficiency ratios have been calculated and linked to hydrodynamic conditions and currents. The impacts of a thermal perturbation from a nuclear power plant effluent (DT 11-degrees - 15-degrees-C) applied to ecosystems are compared.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 5-6 , P. 661-670

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00100/21130/18750.pdf
http://archimer.ifremer.fr/doc/00100/21130/

Éditeur(s) : Elsevier
Résumé : The distribution and speciation of mercury (Hg) in the water column, the inputs (wet deposition and tributaries) and the outputs (atmospheric evasion and outlet) of an artificial partially anoxic tropical lake (Petit-Sa-Lit reservoir, French Guiana) were investigated oil a seasonal basis in order to appraise the cycling and transformations of this metal. The total mercury (HgT) concentrations in the oxygenated epilimnetic waters averaged 5 +/- 3 pmol L-1 in the unfiltered samples (HgTUNF) and 4 +/- 2 pmol L-1 in the dissolved (HgTD) phase (< 0.45 mu m). On average, the monomethylmercury (MMHg) constituted 8%, 40%, and 18% of the HgT in the dissolved phase, tile particulate suspended matter and in tile unfiltered samples, respectively. Covariant elevated concentrations of particulate MMHg and chlorophyll a in the epilimnion suggest that phytoplankton is ail active component for the MMHg transfer in tile lake. In the anoxic hypolimnion the HgTUNF averages 13 +/- 6 pmol L-1 and tile HgTD 8 +/- 4 pmol L-1. The averages of MMHgP and MMHgD in hypolimnetic waters were two and three times the corresponding values of the epilimnion, 170 +/- 90 pmol g(-1) and 0.9 +/- 0.5 pmol L-1, respectively. In the long dry and wet seasons, at the flooded forest and upstream dam sampling stations, the vertical profiles of MMHgD concentrations accounted for two distinct maxima: one just below the oxycline and the other near the benthic interface. Direct wet atmospheric deposition accounted for 14 moles yr(-1) HgTUNF, with 0.7 moles yr(-1) as MMHgUNF, while circa 76 moles yr(-1) of HgTUNF, with 4.7 moles yr(-1) as MMHgUNF, coming from tributaries. Circa 78 moles (similar to 17% as MMHg) are annually exported through tile dam, while 23 moles yr(-1) of Hg-0 evolve in the atmosphere. A mass balance calculation suggests that the endogenic production of MMHgUNF attained 8.1 moles yr(-1), corresponding to a methylation rate of 0.06% d(-1). As a result, tile Petit-Saut reservoir is a large man-made reactor that has extensively altered mercury speciation in favor of methylated species.
Applied Geochemistry (0883-2927) (Elsevier), 2008-05 , Vol. 23 , N. 5 , P. 1101-1126

Droits : 2008 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2008/publication-4198.pdf
DOI:10.1016/j.apgeochem.2007.11.006
http://archimer.ifremer.fr/doc/00000/4198/

Résumé : Ce travail fait suite à la publication du premier volume « Etude de la crise de la pêche de la crevette en Guyane » (Lampert, 2011). Dans ce premier volume nous avons répondu à la première question qui se posait : « la crise de la crevette est-elle due à la pêche elle-même ? ». Nous avons pu répondre par la négative, laissant la porte ouverte à des hypothèses environnementales et trophiques. Facteurs environnementaux La piste des facteurs environnementaux est liée aux changements climatiques, pérennes ou cycliques. L’augmentation de la température de surface de la mer, les changements dans le régime des vents, de la houle et la salinité, la relation qu’il peut y avoir entre le recrutement et les précipitations locales, les débits des fleuves guyanais ou de l’Amazone. Sans oublier les indicateurs climatiques à grande échelle tels que la Southern Ocillation Index (SOI) et la Northern Oscillation Index (NOI) (Santamaría-del-Ángel et al. 2011 ; Aragon-Noriega et Alcántara-Razo 2005 ; Parsons et Lear 2001 ; Serge Garcia et Le Reste 1981 ; S. Garcia 1988 ; Saoud et Davis 2003 ; Rivierre 2007 ; Leal-Gaxiola et al. 2001 ; Li et Clarke 2005 ; Lee 2004 ; Ouellet, Savard, et Larouche 2007). Facteurs trophiques La crevette étant l’une des proies préférées des poissons de Guyane, nous avons avancé dans le premier volume l’hypothèse d’un impact trophique suite à la pression de la pêche au vivaneau. De l’autre coté du réseau trophique, il reste à explorer la piste des changements dans l’abondance phytoplanctonique, qui constitue l’essentiel de l’alimentation des larves de crevette. Un changement significatif dans leur source de nourriture pourrait avoir des conséquences dans leur recrutement. Il en va de même pour l’évolution de la mangrove en biomasse, qui fournit matière organique et refuge pour les larves (Anderson 2000 ; Fuentes-Yaco et al. 2007 ; D. G. Parsons et Colburne 2000 ; Santamaría-Miranda et al. 2005). Les données collectées sont présentées dans la première partie de ce document avec une étude de chaque paramètre et le choix du meilleur indicateur. Dans la deuxième partie nous abordons un premier traitement de ces données afin d’évaluer leur pertinence dans les relations qui peuvent exister avec les valeurs des recrutements de crevettes. Une étude plus exhaustive sera menée dans un prochain volume où seront ajoutés des paramètres tels que les concentrations en chlorophylle, en matières en suspension ou des matières organiques dissoutes. Ce deuxième volume est réalisé dans le cadre du marché ouvert par la Direction des Pêches Maritimes et de l’Agriculture (DPMA) « Marché DPMA 2012-021 », intitulé : Etude portant sur l’effet du changement climatique et/ou du réseau trophique sur le stock guyanais des crevettes pénéïdes. Il constitue le rapport intermédiaire du marché. Dans le troisième volume pourra être abordé l’étude liée au réseau trophique par les analyses des contenus stomacaux des vivaneaux, par les séries de données de biomasse phytoplanctonique (images satellite) et de son paramètre « chlorophylle » et par l’évolution temporelle de la biomasse de la mangrove. La piste de la dérive des oeufs et larves de crevettes depuis les côtes brésiliennes pourra également être explorée si le modèle de courants de surface venait à être opérationnel en 2013. Il permettrait d’avoir des cartes de courants et vitesses de surface permettant de valider l’hypothèse émise dans le volume 1.

Droits : 2013 Ifremer
http://archimer.ifremer.fr/doc/00137/24844/22928.pdf
http://archimer.ifremer.fr/doc/00137/24844/

Éditeur(s) : Université d'Angers
Résumé : In oyster farming areas, organic matter fluxes toward sediment is increased. Pacific oysters (Crassostrea gigas) reject organic-rich faeces and pseudofaeces as a result of filtration process. Organic matter can be consumed by benthic fauna, but in excess it can entails the reduction of benthic faunal species richness, abundance and biomass. Organic matter degradation also induces hypoxic (or anoxic) conditions in the sediment, and production of ammonia and sulfides in toxic concentrations. The main objective of this study is to assess the effects of oyster farming on benthic intertidal ecosystems in the Pertuis Charentais. Benthic macrofauna, living (stained) foraminifera, and physicochemical characteristics of the water column and sediment were used as indicators to evaluate these effects. A multidisciplinary approach was conducted across the Pertuis Charentais at 3 different spatial scales: an oyster trestle (micro-scale), an oyster culture area (meso-scale) and various sites across the Pertuis Charentais (macro-scale). The study was also realised at 4 different temporal scales: some months for the spatial micro-scale, every two weeks for 2 years at meso-scale and once per season during one year at macro-scale. In this study, I found that oyster farming enriches sediment in fine particles, organic matter (up to 12 %), particulate organic carbon (15-20 µg mg 1) and leads to high microphytobenthic biomass. Moreover, the association of seasonnal warming (during spring and summer), remineralisation of accumulated organic matter and short-term hypoxic conditions leads to sulfides and ammonium production. Consequently, the benthic biodiversity decreases and the population dynamic is disturbed. The population dynamic disturbance is characterised by fast abundance rises followed by high mortality rates. In these conditions, tolerant benthic macrofaunal (Cirratulidae, Spionidae and Capitellidae) and foraminiferal (Ammonia tepida and Cribroelphidium gunteri) species are promoted. AMBI index confirms "medium" ecological quality of oyster farming areas. On the contrary, across the control sites, sensible species are maintained (Amphipods, Rosalina cf. vilardeboana). Comparison of oyster farming techniques shows that on-bottom culture is less disturbing for benthic ecosystem than off-bottom culture. Axial tomodensitometry, an innovative method, was used to describe in 3D the sedimentary column organisation. I show that oyster farming modifies the sedimentary column functioning. Indeed, the macrofaunal diversity decrease leads to the modification of the functional diversity of assemblages. Thus, the vertical distribution of living foraminifera is limited in oyster farming areas, because their distribution is tightly related to macrofaunal bioturbating modes.
Dans les zones ostréicoles, les flux de matière organique sont importants, l'huître Crasssotrea gigas rejetant sous forme de pseudo-fécès et de fécès de grandes quantités de matière organique. De ce fait, bien que cette matière organique puisse être consommée par la faune benthique, sa surabondance peut provoquer une réduction de la richesse spécifique, de l'abondance et de la biomasse et provoquer sur le plan des processus biogéochimiques des déplétions en oxygène et l'apparition de substances comme l'ammonium et les sulfures dont les concentrations peuvent devenir toxiques. L'objectif principal de cette étude était donc de déterminer l'impact de l'ostréiculture, grâce à plusieurs indicateurs, sur le compartiment benthique d'un écosystème littoral comme les pertuis charentais. Pour évaluer ces effets, la macrofaune benthique et les foraminifères vivants benthiques ont été utilisés en association avec des mesures des paramètres physico-chimiques de la colonne d'eau et du sédiment. Une approche pluridisciplinaire a ainsi été menée dans les pertuis charentais à trois échelles spatiales différentes : à l'échelle d'une table ostréicole (micro-échelle), à l'échelle d'un site ostréicole (méso-échelle) et à l'échelle des pertuis charentais (macro-échelle). Dans les trois cas, un suivi dans le temps a été associé à une étude de distribution spatiale, quelques mois à micro-échelle, tous les quinze jours pendant deux années à méso-échelle et une fois par saison pendant une année à macro-échelle. Ces différentes approches ont permis d'avoir une vision pertinente de la dynamique et de la réponse fonctionnelle de la faune benthique aux changements induits par la présence de l'ostréiculture. La présence des cultures ostréicoles dans les pertuis charentais enrichit les sédiments en particules fines, en matière organique (12 %), en carbone organique particulaire (15-20 µg mg-1) et favorise une production microphytobenthique élevée. Pendant la période chaude de l'année printemps-été, la reminéralisation de la matière organique accumulée associée à des hypoxies temporaires a favorisé la production de sulfures et d'ammonium. Dans les stations soumises à l'ostréiculture, la diversité des assemblages diminue. La dynamique des espèces est caractérisée par des augmentations rapides des abondances suivies d'épisodes de mortalité. Les espèces tolérantes de la macrofaune benthique (Cirratulidae, Spionidae et Capitellidae) et des foraminifères vivants benthiques (Ammonia tepida et Cribroelphidium gunteri) sont favorisées. Le calcul de l'indice AMBI confirme la qualité écologique moyenne de ces sites. Au contraire, dans la station témoin, les espèces sensibles sont favorisées (Amphipodes, Rosalina cf. vilardeboana). La comparaison de la technique de culture sur table et de culture à plat a montré que la culture des huîtres à plat est moins perturbante pour le milieu. L'étude de la bioturbation a montré l'influence qui existe entre le mode de bioturbation des différents groupes de la macrofaune et la répartition verticale des foraminifères vivants dans la colonne sédimentaire. La diminution de la diversité des assemblages de la macrofaune dans les zones soumises à l'ostréiculture modifient la diversité fonctionnelle de ces assemblages et affectent le fonctionnement de la colonne sédimentaire, limitant la répartition verticale des foraminifères dans ces zones.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-2582.pdf
http://archimer.ifremer.fr/doc/00000/2582/

Éditeur(s) : Université Paul Sabatier, Toulouse III
Résumé : The marine phytoplankton in the ocean represents only less than 1% of global biomass. Phytoplankton performs half of all photosynthesis. This autotrophic biomass in ocean is then an essential element in the climate regulation through processes as carbon dioxide absorption during the photosynthesis. Therefore, we need to estimate precisely this biomass as well as the processes which affect it. Using remotely sensed data (altimetry and ocean colour) and a coupled physical/biogeochemical model (MERCATOR-OPA/NPZDDON), Rossby waves and their influence on phytoplankton biomass are specifically studied in the North Atlantic Ocean. Their features and their influences on surface chlorophyll concentrations were analysed. Through the different mechanisms identified, we estimated that these waves can induce local increases from 60% to 150% of the estimated primary production.
Même si l'océan ne représente que moins de 1% de la biomasse liée aux plantes sur la terre, il est responsable de près de la moitié de la photosynthèse nette de la biosphère. Cette biomasse est par conséquent un élément essentiel dans la régulation du climat à travers par exemple le cycle océanique du carbone. Il est donc nécessaire d'estimer correctement cette biomasse ainsi que les processus qui l'affectent. A l'aide de données satellites altimétriques et couleur de l'eau et d'un modèle couplé physique/biogéochimie (MERCATOR-OPA / NPZDDON), les ondes de Rossby et leur influence sur cette biomasse sont spécifiquement étudiées dans l'océan Atlantique Nord. Leurs propriétés et leur influence sur les concentrations en chlorophylle de surface sont analysées. Au travers des mécanismes mis en jeu identifiés, nous estimons que ces ondes peuvent entraîner une augmentation locale comprise entre 60% et 150% de la production primaire estimée.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/these-2454.pdf
http://archimer.ifremer.fr/doc/00000/2454/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé :  
Genetic variation for intrinsic water use efficiency (W i) and related traits was estimated in a full-sib family of Quercus robur L. over 3 years. The genetic linkage map available for this F1 family was used to locate quantitative trait loci (QTL) for W i, as estimated by leaf carbon stable isotope composition (δ 13C) or the ratio of net CO2 assimilation rate (A) to stomatal conductance to water vapour (g w) and related leaf traits. Gas exchange measurements were used to standardize estimates of A and g w and to model the sensitivity of g w to leaf-to-air vapour pressure deficit (sgVPD). δ 13C varied by more than 3‰ among the siblings, which is equivalent to 40% variation of W i. Most of the studied traits exhibited high clonal mean repeatabilities (>50%; proportion of clonal mean variability in global variance). Repeatabilities for δ 13C, leaf mass per area (LMA) and leaf nitrogen content were higher than 70%. For δ 13C, ten QTLs were detected, one of which was detected repeatedly for all 3 years and consistently explained more than 20% of measured variance. Four genomic regions were found in which co-localizing traits linked variation in W i to variations in leaf chlorophyll and nitrogen content, LMA and sgVPD. A positive correlation using clonal means between δ 13C and A/g w, as well as a co-localisation of QTL detected for both traits, can be seen as validation of the theoretical model linking the genetic architecture of these two traits.
ISSN: 1614-2942

hal-01032066
https://hal.archives-ouvertes.fr/hal-01032066
DOI : 10.1007/s11295-007-0107-z