Éditeur(s) : HAL CCSD
Résumé : IGARSS 2015, Milan, ITA, 26-/07/2015 - 31/07/2015
International audience
LiDAR remote sensing has been shown to be a good technique for the estimation of forest parameters such as canopy heights and aboveground biomass. Whilst airborne LiDAR data are in general very dense but only available over small areas due to the cost of their acquisition, spaceborne LiDAR data acquired from the Geoscience Laser Altimeter System (GLAS) have a coarser acquisition density associated with a global cover. It is therefore valuable to analyze the integration relevance of canopy heights estimated from LiDAR sensors with ancillary data such as geological, meteorological, and phenological variables in order to propose a forest canopy height map with good precision and high spatial resolution.In this study, canopy heights extracted from both airborne and spaceborne LiDAR, were first extrapolated from available environmental data. The estimated canopy height maps using random forest (RF) regression from the airborne or GLAS calibration datasets showed similar precisions (RMSE better than 6.5 m). In order to improve the precision of the canopy height estimates regression-kriging (kriging of RF regression residuals) was used. Results indicated an improvement in the RMSE (decrease from 6.5 to 4.2 m) for the regression-kriging maps from the GLAS dataset, and from 5.8 to 1.8 m for the regression-kriging map from the airborne LiDAR dataset.
Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International
Milan, Italy

hal-01244677
https://hal.archives-ouvertes.fr/hal-01244677
https://hal.archives-ouvertes.fr/hal-01244677/document
https://hal.archives-ouvertes.fr/hal-01244677/file/mt2015-pub00044297.pdf
DOI : 10.1109/IGARSS.2015.7326729

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
The activity of subhorizontal decollements mapped by geologists in extensional provinces is not explained by rock mechanics principles, which predict that only steep faults can slip. These exposed decollements are therefore suspected to be inactive; they may correspond to rotated, formerly active, high-angle faults. However, growing seismological evidence of earthquakes with low-angle fault-plane mechanisms has forced us to revisit this viewpoint. Using the example of the Gulf of Corinth in Greece, we propose a mechanical model that explains how a weak, high-angle fault may form a low-angle decollement at depth. This decollement is uplifted in a second stage of extension, which allows the exhumation of a metamorphic core complex such as the northern Snake Range, Nevada.
ISSN: 0091-7613

hal-01419920
https://hal.archives-ouvertes.fr/hal-01419920
DOI : 10.1130/0091-7613(2001)029<0439:CCMFTG>2.0

Éditeur(s) : HAL CCSD American Mathematical Society
Résumé : International audience
We propose to study fragmentability of set-valued mappings not only for a given single mapping, but also for a sequence of mappings associated with the initial one. It turns out that this property underlies several variational principles, such as for example the Deville-Godefroy-Zizler variational principle and the Stegall variational principle, by providing a common path for proof.
ISSN: 0002-9939

hal-00698981
https://hal.archives-ouvertes.fr/hal-00698981

Éditeur(s) : HAL CCSD Society for Industrial and Applied Mathematics
Résumé : International audience
We present iterative methods for finding the critical points and/or the minima of extended real valued functions of the form $phi = psi+ g-h$, where $psi$ is a differentiable function and g and h are convex, proper, and lower semicontinuous. The underlying idea relies upon the discretization of a first order dissipative dynamical system which allows us to preserve the local feature and to obtain some convergence results. The main theorems not only recover known convergence results in this field but also provide a theoretical basis for the development of new iterative methods.
ISSN: 1052-6234

hal-00779987
https://hal.univ-antilles.fr/hal-00779987
DOI : 10.1137/060655183

Éditeur(s) : HAL CCSD Elsevier
Résumé : We studied the evolution of the microstructure of ice-Ih during static recrystallization by stepwise annealing experiments. We alternated thermal annealing and electron backscatter diffraction (EBSD) analyses on polycrystalline columnar ice pre-deformed in uniaxial compression at temperature of −7 °C to macroscopic strains of 3.0–5.2. Annealing experiments were carried out at −5 °C and −2 °C up to a maximum of 3.25 days, typically in 5–6 steps. EBSD crystal orientation maps obtained after each annealing step permit the description of microstructural changes. Decrease in average intragranular misorientation at the sample scale and modification of the misorientation across subgrain boundaries provide evidence for recovery from the earliest stages of annealing. This initial evolution is similar for all studied samples irrespective of their initial strain or annealing temperature. After an incubation period ≥1.5 h, recovery is accompanied by recrystallization (nucleation and grain boundary migration). Grain growth proceeds at the expense of domains with high intragranular misorientations, consuming first the most misorientated parts of primary grains. Grain growth kinetics fits the parabolic growth law with grain growth exponents in the range of 2.4–4.0. Deformation-induced tilt boundaries and kink bands may slow down grain boundary migration. They are stable features during early stages of static recrystallization, only erased by normal growth, which starts after >24 h of annealing.
ISSN: 0191-8141

hal-01685644
https://hal.archives-ouvertes.fr/hal-01685644
DOI : 10.1016/j.jsg.2017.05.001

Éditeur(s) : Springer
Résumé : The Håkon Mosby mud volcano is a 1.5-km-diameter geological structure located on the Southwest Barents Sea slope at a water depth of 1,270 m. High-definition seabed mapping of the mud volcano has been carried out in 2003 and 2006. A comparative analysis of the bathymetry and backscatter maps produced from the two surveys shows subtle morphological changes over the entire crater of the mud volcano, interpreted to be the consequence of mud eruption events. Mud temperature measurements point to a persistently warm mud at shallow depth in the crater. This is explained by upward fluid advection, rather than conductive cooling of mud flows. The small-scale spatial variability in the temperature distribution may be related to mud outflows or changes in the fluid flow regime. Furthermore, the locations of free gas venting observed in 2006 were found to differ from those of 2003. Our observations of overall similar topographic profiles across the mud volcano in 2003 and 2006 suggest that eruption events would have been modest. Nevertheless, the data bring evidence of significant change in activity even over short time intervals of only 3 years. This may be a characteristic shared by other submarine mud volcanoes, notably those considered to be in a quiescent stage.
Geo-marine Letters (0276-0460) (Springer), 2010-06 , Vol. 30 , N. 3-4 , P. 157-167

Droits : Springer-Verlag 2010
http://archimer.ifremer.fr/doc/00004/11527/10261.pdf
DOI:10.1007/s00367-010-0193-z
http://archimer.ifremer.fr/doc/00004/11527/

Éditeur(s) : Ieee-inst Electrical Electronics Engineers Inc
Résumé : We validate Soil Moisture and Ocean Salinity (SMOS) sea surface salinity (SSS) retrieved during August 2010 from the European Space Agency SMOS processing. Biases appear close to land and ice and between ascending and descending orbits; they are linked to image reconstruction issues and instrument calibration and remain under study. We validate the SMOS SSS in conditions where these biases appear to be small. We compare SMOS and ARGO SSS over four regions far from land and ice using only ascending orbits. Four modelings of the impact of the wind on the sea surface emissivity have been tested. Results suggest that the L-band brightness temperature is not linearly related to the wind speed at high winds as expected in the presence of emissive foam, but that the foam effect is less than previously modeled. Given the large noise on individual SMOS measurements, a precision suitable for oceanographic studies can only be achieved after averaging SMOS SSS. Over selected regions and after mean bias removal, the precision on SSS retrieved from ascending orbits and averaged over 100 km $times$ 100 km and 10 days is between 0.3 and 0.5 pss far from land and sea ice borders. These results have been obtained with forward models not fitted to satellite L-band measurements, and image reconstruction and instrument calibration are expected to improve. Hence, we anticipate that deducing, from SMOS measurements, SSS maps at 200 km $times$ 200 km, 10 days resolution with an accuracy of 0.2 pss at a global scale is not out of reach.
Ieee Transactions On Geoscience And Remote Sensing (0196-2892) (Ieee-inst Electrical Electronics Engineers Inc), 2012-05 , Vol. 50 , N. 5 , P. 1662-1675

Droits : 2012 IEEE
http://archimer.ifremer.fr/doc/00074/18557/16108.pdf
DOI:10.1109/TGRS.2012.2184546
http://archimer.ifremer.fr/doc/00074/18557/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
A network of 26 GPS sites was implemented in Iran and Northern Oman to measure displacements in this part of the Arabia–Eurasia collision zone. We present the GPS velocity field obtained from three surveys performed in 1999 September, 2001 October and 2005 September and the deduced strain tensor. This study refines previous studies inferred from only the two first surveys. Improvements are significant in NE Iran. The present-day shortening rate across the mountain belts of NE Iran is estimated to 5 ± 1 mm yr−1 at about N11°, 2 ± 1 mm yr−1 of NS shortening across the eastern Kopet Dag and 3 ± 1 mm yr−1 of NS shortening across Binalud and Kuh-e-Sorkh. Our GPS measurements emphasize the varying character of the Kopet Dag deformation between its southeastern part with prevailing thrusting at low rates and its northwestern part with dominant strike-slip activity at increasing rates. The principal axes of the horizontal strain tensor appears very homogeneous from the Zagros to the Alborz and the Kopet-Dag (N20°) and in eastern Iran (Makran and Lut block: N30°). Only NW Iran suffers a variable strain pattern which seems to wrap the Caspian basin. The strain tensor map underlines the existence of large homogeneous tectonic provinces in terms of style and amplitude of the deformation.
ISSN: 0956-540X

insu-00346744
https://hal-insu.archives-ouvertes.fr/insu-00346744
DOI : 10.1111/j.1365-246X.2007.03477.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Chenaillet Ophiolite in the Franco-Italian Alps represents a well-exposed ocean-floor sequence that was only weakly overprinted by Alpine metamorphism during its emplacement in the Alpine nappe stack. Pillow lavas showing a Mid Ocean Ridge Basalt (MORB) signature overlie tectonically exhumed gabbros and serpentinized mantle rocks similar to oceanic core complexes (OCC) described from present-day slow- to ultraslow-spreading ridges. Based on detailed mapping it can be shown that: 1) syn-magmatic high-temperature shear zones are truncated by oceanic detachment faults; 2) sediments consisting exclusively of clasts derived from the footwall of the detachment are overlain by voluminous lavas, and 3) emplacement of lavas is linked with high-angle faulting that overprint the oceanic detachment fault. Based on stratigraphic and cross cutting relationships we conclude that: 1) a complex relation between high- and low-temperature shear zones exists, 2) oceanic detachment faults may be obliterated by later emplaced of MOR basalts, and 3) high-angle faults may serve at shallow levels as feeder channels for the overlying pillow basalts. These observations raise questions about the relative relations in time and space between magmatic, hydrothermal and tectonic processes at spreading systems. We propose that the observed change from exhumation along an oceanic detachment fault to high-angle faulting associated with extrusion of volcanic rocks may represent an evolution within a life cycle of a spreading system that may be comparable to present-day slow- to ultraslow-spreading ridges.
ISSN: 0024-4937

hal-00617678
https://hal.archives-ouvertes.fr/hal-00617678
DOI : 10.1016/j.lithos.2010.10.017

Résumé : Cette thèse traite de la problématique de l'analyse automatique de tracés manuscrits réalisés à mains levée, à caractère géométrique et acquis en ligne. Lorsque l'on analyse un tracé en ligne, on peut le faire selon plusieurs angles. Comme pour les tracés hors ligne, on peu s'atteler à reconnaitre la forme produite. Mais le caractère en ligne de l'acquisition permet également d'autres niveaux d'analyse, comme l'analyse de la procédure utilisée par le dessinateur lors de la production de son dessin. Nous avons dans le cadre de ce travail élaboré des outils permettant de telles analyses de la production de tracé. Dans une première partie nous traitons des pré traitements à effectuer sur le tracé afin de pouvoir procéder aux analyses spatio-graphique et procédurale. Ces pré traitements sont le filtrage, la segmentation mixte à base d'arcs de cercles et de segments de droite, la sélection des points d'intérêt ainsi que l'identification de la nature de ces points. La seconde partie concerne l'analyse visuo-spatiale. Nous abordons alors deux aspects: la question de la reconnaissance des formes et celle de l'évaluation automatique de leur qualité. Notre contribution consiste en une méthode de reconnaissance basée sur l'apparence utilisant des descripteurs locaux. La dernière partie traite de l'analyse procédurale. Nous proposons une méthode d'extraction et de modélisation de la procédure mise en œuvre lors du dessin d'une forme. Nous montrons comment en utilisant cette modélisation, nous pouvons non seulement déterminer la procédure favorite d'un utilisateur mais également reconnaitre un dessinateur par l'analyse de sa procédure.
This thesis handles the problem of the automatic analysis of online hand drawn geometric sketches. An online sketch can be analysed according to several points of view. As for offline sketching, we can try to recognize the produced shape. However, online sketching allows other levels of analysis. For example the analysis of the behavior of the drawer during the production of the sketch. In this thesis, we have tried to develop tools allowing a multi level analysis, including both shape and behavior analysis. The first part of our work deals with the pre treatments that must be performed on the sketch in order to allow upper level analysis. Those pre treatments are filtering, mixed segmentation and feature points detection and labelisation. In the second part, we approach shape analysis in two aspects: shape recognition and evaluation. We have developed a appearance based method which use local descriptors to allows both recognition and evaluation of the quality of a produced shape compared to the model . in the last part we propose a method for drawer's behavior extraction and modeling. Then we show how we can not only determine the favorite procedure of a drawer but also recognize the drawer by analyzing his behavior.

http://www.theses.fr/2010AGUY0394/document

Résumé : Les termites ont un rôle clé dans le fonctionnement de l’écosystème forêt en particulier celui du recyclage de la litière en matière organique. Cependant, quelques espèces de termites sont des xylophages spécialisés dans la dégradation du bois des forêts, mais sont considérés comme des nuisibles dans les zones anthropisées.En France, le problème « termites » lié aux constructions n’a été traité que dans les années 90. La loi n°99-471, votée le 8 juin 1999 définit les modalités de mise en oeuvre d´une politique de lutte dans laquelle sont engagés tous les acteurs: l´Etat, les collectivités locales, les professionnels ainsi que les propriétaires d´immeubles. La Guyane-française est située dans la carte établie par le FCBA des départements de France où l’arrêté est effectif. Toutefois, ce département d’outre-mer reste aujourd’hui avec beaucoup de lacunes en termes de connaissances sur ses termites.On connaît de façon exhaustive le nombre et les différentes espèces de termites xylophages et on sait également quelles sont les principales familles qui sont présentes dans les bâtiments. Mais on ne sait pas dire quelles sont les espèces de termites qui s’intéressent à nos bois d’œuvres.L’objectif de cette étude est d’identifier les genres et espèces de termites qui s’attaquent à trois essences de bois de durabilité faible ou moyenne (Gonfolo, Simarouba et Yayamadou) et de comprendre comment ces attaques se produisent, en contexte forestier, en lien avec des variables du milieu, et l’effet de la saison de mise en contact.Le Yayamadou est une espèce très appétante pour les termites de Guyane, à condition de disposer de tas de bois d’un volume suffisant (> 500cm3), c’est l’espèce qui présente la plus grande diversité de termites actifs. 18 espèces de termites ont été trouvées sur les tas de bois, mais 10 seulement avec une fréquence dépassant le %. Une description détaillée et une clé d’identification sont proposées pour ces espèces.La diversité des termites est plus importante dans les milieux forestiers naturels. Les résultats montrent, qu’Heterotermes tenuis est l’espèce la plus fréquente quel que soit le milieu. Il y a une spécificité attractive de certaines espèces de termites pour telle essence plutôt que telle autre.Enfin, la saisonnalité, correspondant au moment où l’on installe les échantillons de bois en forêt, joue un rôle dans l’apparition de termites sur telle ou telle essence de bois. Il existe dans chaque milieu des espèces qui peuvent potentiellement s’attaquer au bois des habitations
The termites have a role key in the functioning of the ecosystem forest in particular the one of the recycling of the litter in organic matter. Nevertheless, some termites species are specialized in the degradation of the wood of the forests, but are considered plagues in humans place.In France, the problem « termites » linked by the buildings was treated only in the 90’s. The law n°99-471, voted by the 8 June 1999 defines the methods of implement of politics to fights in which are engaged all the actors: the government, the local groups, the professionals as well as the owners of buildings. The French Guiana-is in the map established by the FCBA that departments of France where the law is effective. Nevertheless, this “outre-mer” department remains today with a lot of gaps in terms of knowledge on its termites. We know in a manner exhaustive the number and the different types of xylophagous termites and we know too which are the principal families that are present in the buildings. But we don’t know to say which are the types of termites that are very interested in our lumber.The objective of this study is to identify the genera and termites species that attack themselves to three sorts of wood of weak or average durability (Gonfolo, Simarouba et Yayamadou) and to understand how these attacks produce themselves, in forest context, in link with variables of the environment, and the effect of the season of placement in contact.The Yayamadou is a Wood specie that atracts a lot of termites in French Guiana, to condition to have access to pile of wood of a sufficient volume (> 500cm3), it is the type that presents the biggest diversity of active termites. 18 species of termites were found on the wood piles, but 10 only with a frequency surpassing the 80%. A detailed description and an identification key are proposed for these species. The diversity of the termites is more important in the natural forest environments. The results show, that Heterotermes tenure is the type the does more frequent whatever the environment. There is an attractive specificity of some types of termites for such wood species rather than such other.Finally, the seasonality, corresponding the moment when we installs the wood samples in forest, plays a role in the appearance of termites on such or such wood species. There are in every environment of the types that potentially can attack the wood of the buildings.

http://www.theses.fr/2012AGUY0571/document

Éditeur(s) : HAL CCSD Wiley-VCH Verlag
Résumé : International audience
Deciphering the assembly history of the Milky Way is a formidable task, which becomes possible only if one can produce high-resolution chrono-chemo-kinematical maps of the Galaxy. Data from large-scale astrometric and spectroscopic surveys will soon provide us with a well-defined view of the current chemo-kinematical structure of the Milky Way, but will only enable a blurred view on the temporal sequence that led to the present-day Galaxy. As demonstrated by the (ongoing) exploitation of data from the pioneering photometric missions CoRoT, Kepler, and K2, asteroseismology provides the way forward: solar-like oscillating giants are excellent evolutionary clocks thanks to the availability of seismic constraints on their mass and to the tight age-initial-mass relation they adhere to. In this paper we identify five key outstanding questions relating to the formation and evolution of the Milky Way that will need precise and accurate ages for large samples of stars to be addressed, and we identify the requirements in terms of number of targets and the precision on the stellar properties that are needed to tackle such questions. By quantifying the asteroseismic yields expected from PLATO for red-giant stars, we demonstrate that these requirements are within the capabilities of the current instrument design, provided that observations are sufficiently long to identify the evolutionary state and allow robust and precise determination of acoustic-mode frequencies. This will allow us to harvest data of sufficient quality to reach a 10% precision in age. This is a fundamental pre-requisite to then reach the more ambitious goal of a similar level of accuracy, which will only be possible if we have to hand a careful appraisal of systematic uncertainties on age deriving from our limited understanding of stellar physics, a goal which conveniently falls within the main aims of PLATO's core science.
ISSN: 0004-6337

hal-01541393
https://hal.archives-ouvertes.fr/hal-01541393
ARXIV : 1706.3778
BIBCODE : 2017AN....338..644M
DOI : 10.1002/asna.201713385

Éditeur(s) : Public Library Science
Résumé : Background: Resolving threats to widely distributed marine megafauna requires definition of the geographic distributions of both the threats as well as the population unit(s) of interest. In turn, because individual threats can operate on varying spatial scales, their impacts can affect different segments of a population of the same species. Therefore, integration of multiple tools and techniques - including site-based monitoring, genetic analyses, mark-recapture studies and telemetry - can facilitate robust definitions of population segments at multiple biological and spatial scales to address different management and research challenges. Methodology/Principal Findings: To address these issues for marine turtles, we collated all available studies on marine turtle biogeography, including nesting sites, population abundances and trends, population genetics, and satellite telemetry. We georeferenced this information to generate separate layers for nesting sites, genetic stocks, and core distributions of population segments of all marine turtle species. We then spatially integrated this information from fine-to coarse-spatial scales to develop nested envelope models, or Regional Management Units (RMUs), for marine turtles globally. Conclusions/Significance: The RMU framework is a solution to the challenge of how to organize marine turtles into units of protection above the level of nesting populations, but below the level of species, within regional entities that might be on independent evolutionary trajectories. Among many potential applications, RMUs provide a framework for identifying data gaps, assessing high diversity areas for multiple species and genetic stocks, and evaluating conservation status of marine turtles. Furthermore, RMUs allow for identification of geographic barriers to gene flow, and can provide valuable guidance to marine spatial planning initiatives that integrate spatial distributions of protected species and human activities. In addition, the RMU framework - including maps and supporting metadata - will be an iterative, user-driven tool made publicly available in an online application for comments, improvements, download and analysis.
Plos One (1932-6203) (Public Library Science), 2010-12 , Vol. 5 , N. 12 , P. -

Droits : 2010 Plos One
http://archimer.ifremer.fr/doc/00028/13926/11308.pdf
DOI:10.1371/journal.pone.0015465
http://archimer.ifremer.fr/doc/00028/13926/

Éditeur(s) : HAL CCSD Coastal Education and Research Foundation
Résumé : The south part nearshore zone of the Gulf of Lions coast (Mediterranean Sea) is characterized by a double crescentic sandbar system. During the winter 2007, a campaign of intensive hydrodynamical measurements (current profiles) was realized. During this campaign, based mainly on ADCPs, the maximal recorded wave height was 1.5 m. Four events were observed; two of those had northern incidence, one with southern incidence and a last one with frontal incidence. This paper proposes 3D hydrodynamical circulation maps over this microtidal bar system. The currents described reveals rip, bed-return and longshore currents strongly influenced by the wind-waves forcing and the bathymetry. At the apex of the oblique incidence events, the longshore component is the most important. The breaker zone is only located over the inner bar. During storm waning conditions, the cross-shore currents appear over the trough of the outer bar. The hydrodynamic circulation is then compared with other observations made in the literature.
ISSN: 0749-0208
Szczecin, Poland

hal-00767593
https://hal.archives-ouvertes.fr/hal-00767593

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Aims: A description of bacterial pathogens in shrimp ponds is necessary to understand their pathogenesis. Vibrio nigripulchritudo was shown to contain saprophytic and pathogenic strains among New Caledonian isolates. We established a method to map the development of V. nigripulchritudo in pond sediments at three different genetic levels: the species level, then at the pathogenic cluster level and finally at the plasmid level, present only in all highly pathogenic isolates. Methods and Results: PCR methods were applied to shrimp pond sediments both before and after a mortality outbreak. Using crude samples, the species V. nigripulchritudo is not detected at first (0/42 samples at day 56 post stocking) but appears frequently in the sediments after the mortality event (30/42 at day 107). The distribution of strains from the pathogenic cluster of V. nigripulchritudo also follows this pattern. In contrast, the pSFn1 virulence-associated plasmid was detected in one sample at day 56 and none at day 107. An enrichment method was developed to lower the detection limits of our assays. After enrichment, the species V. nigripulchritudo was detected in all samples at both dates. The number of samples positive for pSFn1 was 42/42 samples at day 56 and 29/42 at day 107. Conclusions: These results show that the sediments contain V. nigripulchritudo, notably pathogenic strains. Surprisingly, the virulence-associated plasmid pSFn1 found in all V. nigripulchritudo isolated from moribund shrimp appears less frequently in sediments, possibly being useless or even detrimental to its recipient bacteria in this environment. Significance and Impact of the Study: This study confirms the presence of pathogenic V. nigripulchritudo strains in shrimp pond sediment before a mortality outbreak complying with a previous hypothesis that sediments could be the infecting reservoir. After the outbreak, both total V. nigripulchritudo and pathogenic strains populations have largely increased, possibly contributing to the recurrent mortality observed in this shrimp vibriosis.
Journal Of Applied Microbiology (1364-5072) (Wiley-blackwell Publishing, Inc), 2010-06 , Vol. 108 , N. 6 , P. 2003-2011

Droits : 2010 The Society for Applied Microbiology - Wiley-Blackwell
http://archimer.ifremer.fr/doc/00004/11484/8177.pdf
DOI:10.1111/j.1365-2672.2009.04601.x
http://archimer.ifremer.fr/doc/00004/11484/

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Infant and neonatal mortality indicators are known to vary geographically, possibly as a result of socioeconomic and environmental inequalities. To better understand how these factors contribute to spatial and temporal patterns, we conducted a French ecological study comparing two time periods between 2002 and 2009 for three (purposefully distinct) Metropolitan Areas (MAs) and the city of Paris, using the French census block of parental residence as the geographic unit of analysis. We identified areas of excess risk and assessed the role of neighborhood deprivation and average nitrogen dioxide concentrations using generalized additive models to generate maps smoothed on longitude and latitude. Comparison of the two time periods indicated that statistically significant areas of elevated infant and neonatal mortality shifted northwards for the city of Paris, are present only in the earlier time period for Lille MA, only in the later time period for Lyon MA, and decrease over time for Marseille MA. These city-specific geographic patterns in neonatal and infant mortality are largely explained by socioeconomic and environmental inequalities. Spatial analysis can be a useful tool for understanding how risk factors contribute to disparities in health outcomes ranging from infant mortality to infectious disease-a leading cause of infant mortality.
ISSN: 1660-4601

hal-01359563
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01359563
DOI : 10.3390/ijerph13060624
PUBMED : 27338439

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Genetic recombination occurs during meiosis, the key developmental programme of gametogenesis. Recombination in mammals has been recently linked to the activity of a histone H3 methyltransferase, PR domain containing 9 (PRDM9), the product of the only known speciation-associated gene in mammals. PRDM9 is thought to determine the preferred recombination sites--recombination hotspots--through sequence-specific binding of its highly polymorphic multi-Zn-finger domain. Nevertheless, Prdm9 knockout mice are proficient at initiating recombination. Here we map and analyse the genome-wide distribution of recombination initiation sites in Prdm9 knockout mice and in two mouse strains with different Prdm9 alleles and their F(1) hybrid. We show that PRDM9 determines the positions of practically all hotspots in the mouse genome, with the exception of the pseudo-autosomal region (PAR)--the only area of the genome that undergoes recombination in 100% of cells. Surprisingly, hotspots are still observed in Prdm9 knockout mice, and as in wild type, these hotspots are found at H3 lysine 4 (H3K4) trimethylation marks. However, in the absence of PRDM9, most recombination is initiated at promoters and at other sites of PRDM9-independent H3K4 trimethylation. Such sites are rarely targeted in wild-type mice, indicating an unexpected role of the PRDM9 protein in sequestering the recombination machinery away from gene-promoter regions and other functional genomic elements.
ISSN: 0028-0836

hal-00877666
https://hal.archives-ouvertes.fr/hal-00877666
DOI : 10.1038/nature11089
PUBMED : 22660327

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Gibraltar arc, spans a complex portion of the Africa-Eurasia plate boundary marked by slow oblique convergence and intermediate and deep focus seismicity. The seemingly contradictory observations of a young extensional marine basin surrounded by an arcuate fold-and-thrust belt, have led to competing geodynamic models (delamination and subduction). Geophysical data acquired in the past decade provide a test for these models and support a narrow east-dipping, subduction zone. Seismic refraction studies indicate oceanic crust below the western Gulf of Cadiz. Tomography of the upper mantle reveals a steep, east-dipping high P-wave velocity body, beneath Gibraltar. The anisotropic mantle fabric from SKS splitting shows arc-parallel "fast directions", consistent with toroidal flow around a narrow, westward retreating subducting slab. The accompanying WSW advance of the Rif-Betic mountain belt has constructed a thick pile of deformed sediments, an accretionary wedge, characterized by west-vergent thrust anticlines. Bathymetric swath‐mapping images an asymmetric embayment at the deformation front where a 2 km high basement ridge has collided. Subduction has slowed significantly since 5 Ma, but deformation of recent sediments and abundant mud volcanoes suggest ongoing activity in the accretionary wedge. Three possible origins for this deformation are discussed; gravitational spreading, overall NW-SE convergence between Africa and Iberia and finally a WSW tectonic push from slow, but ongoing roll-back subduction. In the absence of arc volcanism and shallow dipping thrust type earthquakes, evidence in favor of present-day subduction can only be indirect and remains the object of debate. Continued activity of the subduction offers a possible explanation for great (M > 8.5) earthquakes known to affect the area, like the famous 1755 Great Lisbon earthquake. Recent GPS studies show SW motion of stations in N Morocco at velocities of 3-6 mm/yr indicating the presence of an independent block, a "Rif-Betic-Alboran" microplate, situated between Iberia and Africa.
ISSN: 0040-1951

insu-00769762
https://hal-insu.archives-ouvertes.fr/insu-00769762
DOI : 10.1016/j.tecto.2012.08.038

Éditeur(s) : HAL CCSD Ethnobotany Research and Applications
Résumé :  
We examined the limitations of parataxonomic inventories for developing management plans for woody plant resources in tropical rain forests of southwestern Amazonia. Using compilations of herbarium labels, forest personnel interviews and published species descriptions, we assessed the accuracy of common names as parataxonomic units (PUs). We identified 384 common names for 310 harvested woody plant species in the Brazilian state of Acre, of which only 50% were unique to a single taxonomic species. About 10% of common names referred to more than one species, more than half of which included multiple genera. For the 106 species from the Acre sample common to the MAP region including Madre de Dios, Peru and Pando, Bolivia, we identified 198 common names. Splitting was much more frequent in this sample, with more than 80% of species having more than one common name. When the Acre sample was expanded to 131 species from the Brazilian Amazon region, including the states of Amazonas and Para, we identified 740 common names, with nearly 90% of species being represented by more than one common name. Errors and inaccuracy of parataxonomy may contribute to market instability if product orders can not be homogenized within regional markets, and to unsustainable harvests if species are mistakenly lumped into single parataxonomic units. We discuss several programs currently being implemented by our collaborative team in the region to address this issue, including field guides based on digital photography, field courses, and workshops featuring discussions between regional inventory personnel and botanists.
Ethnobotany Research and Applications

hal-01032130
https://hal.archives-ouvertes.fr/hal-01032130

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The 2004 Aceh and 2005 Nias events are the two greatest earthquakes of the past 40 years with a total rupture of 1700 km long and a coseismic slip reaching up to 25 m. These two earthquakes have caused large stress perturbations which significantly altered seismic activity in the Sumatra-Andaman region. Using both detailed mapping of failure planes and various slip distributions, we calculate this stress change along the Sumatra-Andaman-Sagaing fault system from central Sumatra to southern Myanmar. The static Coulomb stress change Delta CFF and the observed seismic activity are in very good agreement with a Coulomb index similar to 20% greater than the one obtained for random events. Compared to previous studies, this high Coulomb Index confirms two important issues on the use of static stress change criterion: unsuited to study near-field aftershocks and only relevant for aftershocks analysis on large and mature faults at a time scale of several months. The calculated Delta CFF distribution suggests that the 2004 and 2005 earthquakes inhibit failure on the North Andaman rift and on the Sagaing fault, while failure is encouraged along the transform Andaman zone, the central Andaman rift, the West Andaman fault, the Sumatra fault system, and the offshore thrust faults west of Sumatra Island. The maximum value of similar to 15-20 bar (1.5-2 MPa) for Delta CFF is reached in the northern part of the Sumatra fault system. This high value together with the lack of major earthquake in the last 170 years result in a high seismic hazard for this region. Our results are also consistent with temporal evolution of both earthquakes' location and focal mechanism prior to and after the events. In particular, we explain the occurrence and the mechanism of seismic swarms observed in the central Andaman rift and along the west Andaman fault. Finally, our calculations reveal that the seismicity in the Andaman rift zone can only be explained if mu' > 0.5. This result leads to two end-member models: one with a constant and high fault friction and one with spatial variations, for which friction may depend on either the nature of the lithosphere (oceanic versus continental) or the fault type.
ISSN: 1525-2027

hal-00456027
https://hal.archives-ouvertes.fr/hal-00456027
DOI : 10.1029/2008GC002167