Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Marine organisms are under threat globally from a suite of anthropogenic sources, but the current emphasis on global climate change has deflected the focus from local impacts. While the effect of increased sedimentation on the settlement of coral species is well studied, little is known about the impact on larval fish. Here, the effect of a laterite “red soil” sediment pollutant on settlement behaviour and post-settlement performance of reef fish was tested. In aquarium tests that isolated sensory cues, we found significant olfaction-based avoidance behaviour and disruption of visual cue use in settlement-stage larval fish at 50 mg L−1, a concentration regularly exceeded in situ during rain events. In situ light trap catches showed lower abundance and species richness in the presence of red soil, but were not significantly different due to high variance in the data. Prolonged exposure to red soil produced altered olfactory cue responses, whereby fish in red soil made a likely maladaptive choice for dead coral compared to controls where fish chose live coral. Other significant effects of prolonged exposure included decreased feeding rates and body condition. These effects on fish larvae reared over 5 days occurred in the presence of a minor drop in pH and may be due to the chemical influence of the sediment. Our results show that sediment pollution of coral reefs may have more complex effects on the ability of larval fish to successfully locate suitable habitat than previously thought, as well as impacting on their post-settlement performance and, ultimately, recruitment success.
ISSN: 0029-8549

hal-01270670
https://hal-univ-perp.archives-ouvertes.fr/hal-01270670
DOI : 10.1007/s00442-015-3367-6

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Whereas broad-scale Amazonian forest types have been shown to influence the structure of the communities of medium-to large-bodied vertebrates, their natural heterogeneity at smaller scale or within the terra firme forests remains poorly described and understood. Diversity indices of such communities and the relative abundance of the 21 most commonly observed species were compared from standardized line-transect data across 25 study sites distributed in undisturbed forests in French Guiana. We first assessed the relevance of a forest typology based on geomorphological landscapes to explain the observed heterogeneity. As previously found for tree beta-diversity patterns, this new typology proved to be a non-negligible factor underlying the beta diversity of the communities of medium-to large bodied vertebrates in French Guianan terra firme forests. Although the species studied are almost ubiquitous across the region, they exhibited habitat preferences through significant variation in abundance and in their association index with the different landscape types. As terra firme forests represent more than 90% of the Amazon basin, characterizing their heterogeneity-including faunal communities-is a major challenge in neotropical forest ecology.
ISSN: 0266-4674

hal-01502647
https://hal-agroparistech.archives-ouvertes.fr/hal-01502647
DOI : 10.1017/S0266467415000255

Éditeur(s) : HAL CCSD
Résumé : International audience
To assess prognostic factors for survival and describe Model for End-Stage liver disease (MELD) dynamics in human immunodeficiency virus+/hepatitis C virus+ (HIV+/HCV+) patients after an initial episode of hepatic decompensation.An HIV+/HCV+ cohort of patients experiencing an initial decompensation episode within the year preceding enrollment were followed prospectively. Clinical and biological data were collected every 3 months. Predictors for survival were identified using Kaplan-Meier curves and Cox models. A 2-slope-mixed linear model was used to estimate MELD score changes as a function of survival.Sixty seven patients were included in 32 centers between 2009 and 2012 (72% male; median age: 48 years [interquartile ratio (IQR):45-52], median follow-up: 22.4 months [range: 0.5-65.3]). Overall survival rates were 86%, 78%, and 59% at 6, 12, and 24 months, respectively. Under multivariate analysis, the MELD score at initial decompensation was predictive of survival, adjusted for age, type of decompensation, baseline CD4 counts, and further decompensation during follow-up as a time-dependent variable. The adjusted hazard ratio of death was 1.32 for a score 3 points higher (95% CI: [1.06-1.63], P = 0.012). MELD score kinetics within the 6 months after initial decompensation differed significantly between non-deceased and deceased patients, with a decreased (-0.49/month; P = 0.016), versus a flat (+0.06/month, P = 0.753) mean change in score.MELD is an effective tool to predict survival in HIV+/HCV+ patients with decompensated cirrhosis. A non-decreasing MELD score within 6 months following this initial decompensation episode may benefit from privileged access to liver transplantation in this poor prognosis population
Medicine

hal-01205351
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01205351
DOI : 10.1097/MD.0000000000001239
PUBMED : 26222860

Éditeur(s) : Elsevier Sci Ltd
Résumé : Bycatch of endangered marine turtles is a growing issue for the management of all fisheries, including the oceanic purse-seine fishery. The aim of this study was to assess the spatial and temporal variation in bycatch rates of these species in the entire European purse-seine fishery operating in the Atlantic and Indian oceans. The study was based on data collected through observer programs from 1995 to 2011. During that period, a total of 15 913 fishing sets were observed, including 6 515 on Drifting Fish Aggregating Devices (DFADs) and 9 398 on free swimming schools, representing a global coverage of 10.3% and 5.1% of the total fishing activity in the Atlantic and Indian Ocean, respectively. Moreover, from 2003 to 2011, 14 124 specific observations were carried out on DFADs to check turtle entanglement in the net covering DFADs. We found that the purse-seine fishery has a very low impact on marine turtles. We estimated that the annual number of individuals incidentally captured was 218 (SD = 150) and 250 (SD = 157) in the Atlantic and Indian Ocean, respectively, with more than 75% being released alive. The present study also investigated the impact of DFADs; which is considered a key conservation issue for this fishery. Drifting objects may play a key role in aggregating juveniles of marine turtles, implying the need for improving their construction to avoid entanglement (e.g. avoiding nets in the structure); however, based on our study it is not the main source of incidental captures of marine turtles in this fishery.
Biological Conservation (0006-3207) (Elsevier Sci Ltd), 2014-10 , Vol. 178 , P. 74-87

Droits : 2014 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00206/31760/30632.pdf
DOI:10.1016/j.biocon.2014.06.020
http://archimer.ifremer.fr/doc/00206/31760/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The analysis of field relationships between allochthonous crystalline slivers, ultramafic units and associated sedimentary cover in the high-pressure Schistes Lustrés units of northern Corsica allows reconstruction of the pre-orogenic architecture of a fossil Mesozoic Ocean-Continent Transition (OCT) of the Tethys basin. The studied area, encompassing the Serra di Pigno and Col de Téghime areas (Cap Corse) is composed of an assemblage of prealpine basement sheets made up of serpentinized mantle rocks, Permian gabbros and gneisses, locally associated with Paleozoic metabasites and micaschists. The sedimentary cover includes numerous intervals of calc-schists, marbles, quartzites, micaschists and dolomitic metabreccias yielding a great variety of lithostratigraphical successions. The metasedimentary sequences do not show affinities with the typical cover series of the Prépiémontais margin domains. This implies an origin from a more internal domain (oceanward) for the studied units. In addition, the sedimentary cover of the ultramafic basement units do not display the characters of the classical Alpine ophiolites but bear lithological features showing affinities with both continental and oceanic environments. We assume that the high variability of the sedimentary successions as well as the presence of a basement composed of continental and upper-mantle rocks is consistent with an origin at an OCT. The acidic basement slivers are regarded as former extensional allochthons of continental crust abandoned during breakup on a newly exhumed seafloor of peridotite composition. Such extensional allochthons, will then logically constitute the most internal continental slices buried at great depth during Alpine subduction. This work shows that a lot has to be expected from a revision of the Schistes Lustrés lithostratigraphy in the light of the new concepts of the evolution of the OCT domains.
ISSN: 0040-1951

hal-00795578
https://hal.archives-ouvertes.fr/hal-00795578
DOI : 10.1016/j.tecto.2012.06.013

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
A NE-SW magnetotelluric 110 km-long profile including 18 sites was acquired across the western Rif Cordillera along the Eurasian-African plate boundary, allowing to constrain its poorly known deep structure. It extends from the Internal Zones, close to the Alboran coast, crossing the External Zones and up to the Gharb foreland basin. The periods recorded range from 0.001 s to 1000 s. The combination of magnetotelluric data with available geological data provides new insight regarding the relationship between deep and shallow crustal structures of the Rif Cordillera. Analyses of structural dimensionality suggest a preferential NW-SE direction, and a 2D joint inversion was performed. A 3D inversion extending the 2D model along the strike confirmed the reliability of this approach. The magnetotelluric model shows a heterogeneous upper crust in agreement with the geological structures observed at surface. The Internal Zones correspond to resistive (metamorphic rocks) and conductive (peridotites) bodies, while the External Zones and the foreland basin are characterized by large conductive bodies of variable thickness. A crustal detachment level separating shallow geological units from a probable variscan basement was inferred. At depth, the most relevant feature consists of large resistive bodies with a shallow irregular top, located below the frontal part of the Rif. The outcrops of exotic metapelitic, granitic and gneissic blocks in the frontal part of the Cordillera suggest that these large resistive bodies may correspond to a gneissic or granitic basement surrounded by metapelitic rocks. Late contractive thrust and diapiric processes were responsible for their uplift and shallow emplacement. The Rif constitutes an active southwestward vergent orogenic wedge, oblique to the present-day NW-SE convergent Eurasian-African plate boundary.
ISSN: 1525-2027

hal-00670999
https://hal.archives-ouvertes.fr/hal-00670999
DOI : 10.1029/2011GC003783

Éditeur(s) : HAL CCSD
Résumé : International audience
The purpose of our study is to model a geothermal reservoir. When geothermal reservoir are assumed to be composed of pure water, the transfer of mass and energy is classically described by two balance equations: mass balance equation and the energy balance equation. In addition to those equations, fluid velocity ist classically given by the Darcy law while thermodynamic properties, inferred from theoretical or empirical equations of state, are used to close the mathematical system. Once this system is closed, there exist different solutions. The first one is to solve for pressure and temperature with a variable switch to saturation in the two-phase region (e.g. TOUGH2). The second one is to solve for pressure and enthalpy to increase stability of phase transition between single and two-phase states (e.g. Hydrotherm). We adopted the second option and chose te use a splitting method to get rid of the complexity of coupling equations and a finite volume method for the spatial discretization. Selecting object-oriented languages, we developed a multi-language framework, combining Python, Fortran and a C++ implementation of IAPWS (from the freesteam project) including the supercritical equations, in porous media velocity is given by Darcy law and to close the system physical properties are determined by the IAPWS-IF97 thermodynamic formulation. We resolve the equations in pressure and enthalpy instead of pressure and temperature in order to increase stability and to handle easier the passage from a single-phase to a two-phase system. We solve the system by using a splitting method - to get rid of the complexity of coupling equations - and a finite volume method. We offer some freedom to users thanks to the implementation of several methods like explicit or implicit Euler, Runge-Kutta or BDF2 for time solvers or GMRES and BICGSTAB for the linear solver. We can handle several boundary conditions like no-flow - describing a boundary which can not exchange matter with the exterior - or like a mixed-therm condition - a Dirichlet condition to the pressure and a Dirichlet or an outflow condition to the temperature in order to describe a recharge or a discharge zone - ... We're developing a multi-language framework, combining Python, Fortran and the C++ implementation of IAPWS (from the freesteam project). All these languages are object-oriented. We've applied this simulation model to the dogger in Paris, France, to several one-dimensional systems and a two-dimensional one made by Coumou with the CSMP++ platform. The dogger is a reservoir exploited to produce heat by pumping water at 70 and reinjecting it in the reservoir at 40. In the one-dimensional systems we wanted to observe the process of heat transfer from a higher temperature boundary to a smaller one in a high-energy domain. The last simulation shows the natural convection of water in a fault. For every simulation we compared the solutions we found with an other code (TOUGH2 or CSMP++) and they agreed. The next step will be to model the geothermal plant in Guadeloupe, West Indies. It's the only place in France - and in the West Indies so far - producing electricity with the earth power. The temperature can reach up to 1000 and the pressure range is around a few hundreds MPa. In some surface zones we can see two-phase water at atmospheric pressure. In the 1980s Bouillante was a laboratory for France. Since 1995 Bouillante has given 30GWh electricity a year to the Guadeloupeans.
PROCEEDINGS, Thirty-Ninth Workshop on Geothermal Reservoir Engineering
Stanford, United States

Droits : info:eu-repo/semantics/OpenAccess
hal-00944133
https://hal-brgm.archives-ouvertes.fr/hal-00944133
https://hal-brgm.archives-ouvertes.fr/hal-00944133/document
https://hal-brgm.archives-ouvertes.fr/hal-00944133/file/Copol.pdf

Éditeur(s) : Springer
Résumé : Clonality and genetic structure of the coral Pocillopora damicornis sensu lato were assessed using five microsatellites in 12 populations from four islands of the Society Archipelago (French Polynesia) sampled in June 2008. The 427 analysed specimens fell into 132 multilocus genotypes (MLGs), suggesting that asexual reproduction plays an important role in the maintenance of these populations. A haploweb analysis of ITS2 sequences of each MLG was consistent with all of them being conspecific. Genetic differentiation was detected both between and within islands, but when a single sample per MLG was included in the analyses, the populations turned out to be nearly panmictic. These observations provide further evidence of the marked variability in reproductive strategies and genetic structure of P. damicornis throughout its geographic range; comparison with results previously obtained for the congeneric species Pocillopora meandrina underlines the importance of life history traits in shaping the genetic structure of coral populations
Marine Biology (0025-3162) (Springer), 2014-03 , Vol. 161 , N. 3 , P. 531-541

Droits : Springer-Verlag Berlin Heidelberg 2013
http://archimer.ifremer.fr/doc/00171/28209/26518.pdf
DOI:10.1007/s00227-013-2355-9
http://archimer.ifremer.fr/doc/00171/28209/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Marine organisms are under threat globally from a suite of anthropogenic sources, but the current emphasis on global climate change has deflected the focus from local impacts. While the effect of increased sedimentation on the settlement of coral species is well studied, little is known about the impact on larval fish. Here, the effect of a laterite “red soil” sediment pollutant on settlement behaviour and post-settlement performance of reef fish was tested. In aquarium tests that isolated sensory cues, we found significant olfaction-based avoidance behaviour and disruption of visual cue use in settlement-stage larval fishat 50 mg L−1, a concentration regularly exceeded in situ during rain events. In situ light trap catches showed lower abundance and species richness in the presence of red soil, but were not significantly different due to high variance in the data. Prolonged exposure to red soil produced altered olfactory cue responses, whereby fish in red soil made a likely maladaptive choice for dead coral compared to controls where fish chose live coral. Other significant effects of prolonged exposure included decreased feeding rates and body condition. These effects on fish larvae reared over 5 days occurred in the presence of a minor drop in pH and may be due to the chemical influence of the sediment. Our results show that sediment pollution of coral reefs may have more complex effects on the ability of larval fish to successfully locate suitable habitat than previously thought, as well as impacting on their post-settlement performance and, ultimately, recruitment success.
ISSN: 0029-8549

hal-01346933
https://hal-uvsq.archives-ouvertes.fr/hal-01346933
https://hal-uvsq.archives-ouvertes.fr/hal-01346933/document
https://hal-uvsq.archives-ouvertes.fr/hal-01346933/file/ms%20O%27Connor%20et%20al%20%202014%20%28Oecologia%29.pdf
PUBMED : 26080759

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
1. A substantial fraction of the freshwater available in neotropical forests is impounded within the rosettes of bromeliads that form aquatic islands in a terrestrial matrix. The ecosystem functioning of bromeliads is known to be influenced by the composition of the contained community but it is not clear whether bromeliad food webs remain functionally similar against a background of variation in the understorey environment. 2. We considered a broad range of environmental conditions, including incident light and incoming litter, and quantified the distribution of a very wide range of freshwater organisms (from viruses to macroinvertebrates) to determine the factors that influence the functional structure of bromeliad food webs in samples taken from 171 tank-bromeliads. 3. We observed a gradient of detritus-based to algal-based food webs from the understorey to the overstorey. Algae, rotifers and collector and predatory invertebrates dominated bromeliad food webs in exposed areas, whereas filter-feeding insects had their highest densities in shaded forest areas. Viruses, bacteria and fungi showed no clear density patterns. Detritus decomposition is mainly due to microbial activity in understorey bromeliads where filter feeders are the main consumers of microbial and particulate organic matter (POM). Algal biomass may exceed bacterial biomass in sun-exposed bromeliads where amounts of detritus were lower but functional diversity was highest. 4. Our results provide evidence that tank-bromeliads, which grow in a broad range of ecological conditions, promote aquatic food web diversity in neotropical forests. Moreover, although bromeliad ecosystems have been categorised as detritus-based systems in the literature, we show that algal production can support a non-detrital food web in these systems.
ISSN: 0046-5070

hal-00819103
https://hal.archives-ouvertes.fr/hal-00819103

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The status of ethnic minority has been reported to be associated with a tendency toward sedentary behavior. The Guadeloupean population is composed of Afro-Caribbeans and an Asian Indian minority. This study examined the association of ethnicity and physical activity on the island. Energy expenditures (EE), energy intakes (EI), and macronutrient intakes of 122 Guadeloupean workers (60 Indians and 62 controls) were assessed by three consecutive 24-h recalls. Two-way analyses of variance were conducted to test the hypothesis of an effect of ethnicity, taking the potential effect of sex into account, on these variables. Asian Indians reported lower EE (P=0.011), lower EE/EI ratios (P=0.001), and lower physical activity (P=0.003) than their Afro-Carribean counterparts. Their food intakes were not different in terms of EI or macronutrient intake. No sex × ethnicity interactions were significant. The present study reports a tendency toward physical inactivity in Asian Indians of Guadeloupe associated with EI similar to those of controls. Sedentary lifestyles and energetic imbalances are well-documented risk factors for several diseases, including type 2 diabetes and cardiovascular disease, both major public health concerns in Guadeloupe. Strategies to prevent sedentary lifestyles should be considered for Asian Indian Guadeloupeans.
ISSN: 0905-7188

hal-00706161
https://hal.univ-antilles.fr/hal-00706161
DOI : 10.1111/j.1600-0838.2007.00743.x

Éditeur(s) : HAL CCSD
Résumé :  
A closed depression is defined as a geomorphologic element where a sediment depository is encircled by hillslopes. Despite the fact that closed depressions are often the only stagnant water points in many European landscapes, few ecological researches on their plant assemblages have been done. The main goal of this study was to give first results of the environmental factors responsible for the vegetation composition, richness and rarity in the closed depressions of the Lorraine biogeographical district (Belgium, France and grand-duche de Luxembourg). We surveyed for plant presence 85 forest and 77 grassland closed depressions. For each site, wetland area, local environmental factors and regional connectivities registered. For each species, the Ellenberg values were compiled. To investigate the main source of variation in species composition and in species richness (including richness in rare species), Non-metric Multidimensional Scaling analyses and Generalized Linear Models were respectively used. Species pools in forest (forest and preforest species) and in grassland (bog plants, pioneers, helophytes) were quite different. In both landscapes, a gradient from plants typical of basic high-productive soils to plants typical of acid low-productive soils reflects a shared successional gradient. The accumulation of organic matter allowed the establishment of Sphagnum spp., which slowly acidified the soil and thus acted as ecosystem engineers for the arrival of bog plants. Moreover, the species composition was additionally driven by the plant light tolerance in forests and by the plant water requirements in grasslands. Mechanisms of species accumulation (increase in species richness) were different in forests and in grasslands: respectively related to the plant light tolerance and to the wetland area. At the regional level, the averaged soil productivity was negatively related to the richness in rare species. Indeed, perennial highly-competitive plants such as Glyceria spp., Iris pseudacorus or Urtica dioica impeded the establishment of smaller and rarer species. At the habitat level, isolated closed depressions (due to either low connectivity or low grazing pressure) have more habitat rare species, giving evidences of dispersal limitation in plant assemblages of closed depressions.
7th INTECOL International Wetland Conference
Utrecht, Netherlands

hal-01032381
https://hal.archives-ouvertes.fr/hal-01032381

Éditeur(s) : EDP Sciences
Résumé : The degree to which larvae of the invasive American slipper limpet (Crepidula fornicata) and the Japanese oyster (Crassostrea gigas) may compete for food was examined during 2003 in the laboratory. Larval microalgae uptake, growth and mortality were compared for larvae fed each of six species of unicellular algae, ranging in length from 2 to 10 mu m. Tested diets included the two flagellates Tetraselmis chui (Prasinophyceae) and Isochrysis affinis galbana (T-ISO, Haptophyceae), one member of the Chlorophyceae (Nannochloris atomus), and three diatom species (Chaetoceros calcitrans forma pumilum, Chaetoceros gracilis, Skeletonema marino). We found that the limpet larvae ingested phytoplankton over a wider range of cell sizes and ate at higher rates on each diet than did the oyster larvae. For example, oyster larvae consumed 2216 cells h(-1) of N. atomus, while limpet larvae consumed the same phytoplankton cells at approximately twice that rate, 5159 cells h(-1), on the same diet. Larvae of both species grew more quickly on a mixture of flagellates than on any of the diatom alone (12 versus 7 mu m d(-1) for oyster larvae and 41 versus 28 mu m d(-1) for limpet larvae). Our results suggest that in the Bay of Mount Saint-Michel (France, Western Channel), where larvae of both species co-exist in the summer, intensive grazing by limpet larvae can potentially deplete phytoplankton concentrations to cause competition with oyster larvae, particularly for smaller sized phytoplankton species.
Compétition trophique chez les larves de mollusques marins Crepidula fornicata et Crassostrea gigas. En 2003, des expérimentations ont été menées en laboratoire pour évaluer la compétition trophique entre les larves de crépidules (Crepidula fornicata) et celles de l'huître japonaise (Crassostrea gigas). Les taux de consommation, de croissance et de mortalité sont comparés, en alimentant les larves de chaque mollusque avec six espèces d'algues unicellulaires, dont la taille varie de 2 à 10 μm, deux flagellées Tetraselmis chui (Prasinophycée) et Isochrysis affinis galbana (T-ISO, Haptophycée), une chlorophycée Nannochloris atomus, et trois diatomées : Chaetoceros calcitrans forma pumilum, Chaetoceros gracilis et Skeletonema marinoï. Contrairement aux larves d'huîtres, les larves de crépidules consomment toutes les cellules phytoplanctoniques quelles que soient leurs tailles, et ceci, à un taux plusélevé que celui des larves d'huîtres. Ainsi, une larve d'huître consomme 2216 cellules h−1 de N. atomus, tandis que la larve de crépidule en consomme 5159 cellules h−1, soit environ deux fois plus. Ces expériences mettent également en évidence que les larves des deux espèces grandissent plus vite quand elles sont nourries avec le mélange des algues flagellées plutôt qu'avec chacune des espèces de ces mêmes algues (12 contre 7 μm j−1 pour l'huître et 41 contre 28 μm j−1 pour la crépidule). Ainsi, en baie du Mont Saint-Michel (Manche ouest) où les larves des deux espèces apparaissent à la même période estivale, nos résultats suggèrent que la filtration des larves de crépidules abaisse notablement la concentration de phytoplancton, et tout spécialement celle des petites cellules algales, entraînant alors une compétition trophique avec les larves d'huîtres.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2008-04 , Vol. 21 , N. 2 , P. 197-205

Droits : EDP Sciences, IFREMER, IRD 2008
http://archimer.ifremer.fr/doc/2008/publication-4703.pdf
DOI:10.1051/alr:2008025
http://archimer.ifremer.fr/doc/00000/4703/

Éditeur(s) : HAL CCSD American Society for Microbiology
Résumé : International audience
Coronaviruses (CoVs) have shown neuroinvasive properties in human and animal secondary to replication in peripheral organ but the mechanism of neuroinvasion is unknown. The major aim of our work was to evaluate the ability of CoVs to enter the central nervous system (CNS) through the blood brain barrier (BBB). Using the high hepatotropic mouse hepatitis virus (MHV) type 3, its attenuated variant 51.6-MHV3, showing low tropism for endothelial cells, and the low hepatotropic MHV-A59 strains from murine coronavirus group, we investigated the viral-induced dysfunctions of BBB in vivo and in brain microvascular endothelial cells (BMECs) in vitro. We report here a MHV strain-specific ability to cross the BBB during acute infection according to their virulence for liver. Brain invasion was only observed in MHV3-infected mice and correlated with enhanced BBB permeability associated with decreased expression of ZO-1, VE-cadherin and occludin but not claudin-5 in the brain or in cultured BMECs. BBB breakdown in MHV3 infection was not related to production of barrier-dysregulating inflammatory cytokines or chemokines by infected BMECs but rather to a downregulation of barrier protective IFN-β production. Our findings highlight the importance of IFN-β production by infected BMECs in preserving BBB function and preventing access of blood-borne infectious viruses to the brain. IMPORTANCE: Coronaviruses (CoVs) infect several mammals including humans and are associated with respiratory, gastrointestinal and/or neurological diseases. Some evidences suggest that human respiratory CoVs may show neuroinvasive properties. Indeed, the SARS-CoV, causing severe acute respiratory syndrome, and the CoVs OC43 and 229E were found in the brains of SARS and multiple sclerosis patients respectively. These finding suggest that hematogenous spread CoVs may gain access to CNS at the BBB level. Herein we report for the first time that CoVs exhibit ability to cross the BBB according to strain virulence. BBB invasion by CoVs correlates with viral-induced disruption of tight junctions on BMECs, leading to BBB dysfunction and enhanced permeability. We provide evidence that production of IFN-β by BMECs during CoV infection may prevent BBB breakdown and brain viral invasion
ISSN: 0022-538X

hal-01187308
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187308
DOI : 10.1128/JVI.01501-15
PUBMED : 26202229

Éditeur(s) : HAL CCSD
Résumé : Atmospheric carbon dioxide records indicate that the land surface has acted as a strong global carbon sink over recent decades, with a substantial fraction of this sink probably located in the tropics, particularly in the Amazon. Nevertheless, it is unclear how the terrestrial carbon sink will evolve as climate and atmospheric composition continue to change. Here we analyse the historical evolution of the biomass dynamics of the Amazon rainforest over three decades using a distributed network of 321 plots. While this analysis confirms that Amazon forests have acted as a long-term net biomass sink, we find a long-term decreasing trend of carbon accumulation. Rates of net increase in above-ground biomass declined by one-third during the past decade compared to the 1990s. This is a consequence of growth rate increases levelling off recently, while biomass mortality persistently increased throughout, leading to a shortening of carbon residence times. Potential drivers for the mortality increase include greater climate variability, and feedbacks of faster growth on mortality, resulting in shortened tree longevity. The observed decline of the Amazon sink diverges markedly from the recent increase in terrestrial carbon uptake at the global scale, and is contrary to expectations based on models.
ISSN: 1476-4687

hal-01204223
https://hal.archives-ouvertes.fr/hal-01204223
DOI : 10.1038/nature14283
PRODINRA : 294797
PUBMED : 25788097

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Arthropods represent most of global biodiversity, with the highest diversity found in tropical rain forests. Nevertheless, we have a very incomplete understanding of how tropical arthropod communities are assembled. 2. We conducted a comprehensive mass sampling of arthropod communities within three major habitat types of lowland Amazonian rain forest, including terra firme clay, white-sand and seasonally flooded forests in Peru and French Guiana. We examined how taxonomic and functional composition (at the family level) differed across these habitat types in the two regions. 3. The overall arthropod community composition exhibited strong turnover among habitats and between regions. In particular, seasonally flooded forest habitats of both regions comprised unique assemblages. Overall, 17.7% (26 of 147) of arthropod families showed significant preferences for a particular habitat type. 4. We present a first reproducible arthropod functional classification among the 147 taxa based on similarity among 21 functional traits describing feeding source, major mouthparts and microhabitats inhabited by each taxon. We identified seven distinct functional groups whose relative abundance contrasted strongly across the three habitats, with sap and leaf feeders showing higher abundances in terra firme clay forest. 5. Our novel arthropod functional classification provides an important complement to link these contrasting patterns of composition to differences in forest functioning across geographical and environmental gradients. This study underlines that both environment and biogeographical processes are responsible for driving arthropod taxonomic composition while environmental filtering is the main driver of the variance in functional composition.
ISSN: 0021-8790

hal-01531619
https://hal.archives-ouvertes.fr/hal-01531619
PRODINRA : 349695
PUBMED : 26346553
DOI : 10.1111/1365-2656.12445

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The stratigraphy of the last deglaciation sequence is investigated in Lake Saint-Jean (Québec Province, Canada) based on 300 km of echo-sounder two dimensional seismic profiles. The sedimentary archive of this basin is documented from the Late Pleistocene Laurentidian ice-front recession to the present-day situation. Ten seismic units have been identified that reflect spatio-temporal variations in depositional processes characterizing different periods of the Saint-Jean basin evolution. During the postglacial marine flooding, a high deposition rate of mud settling, from proglacial glacimarine and then prodeltaic plumes in the Laflamme Gulf, produced an extensive, up to 50 m thick mud sheet draping the isostatically depressed marine basin floor. Subsequently, a closing of the water body due to glacio-isostatic rebound occurred at 8.5 cal. ka BP, drastically modifying the hydrodynamics. Hyperpycnal flows appeared because fresh lake water replaced dense marine water. River sediments were transferred towards the deeper part of the lake into river-related sediment drifts and confined lobes. The closing of the water body is also marked by the onset of a wind-driven internal circulation associating coastal hydrodynamics and bottom currents with sedimentary features including shoreface deposits, sediment drifts and a prograding shelf-type body. The fingerprints of a forced regression are well expressed by mouth-bar systems and by the shoreface-shelf system, the latter unexpected in such a lacustrine setting. In both cases, a regressive surface of lacustrine erosion (RSLE) has been identified, separating sandy mouth-bar from glaciomarine to prodeltaic muds, and sandy shoreface wedges from the heterolithic shelf-type body, respectively. The Lake Saint-Jean record is an example of a regressive succession driven by a glacio-isostatic rebound and showing the transition from late-glacial to post-glacial depositional systems.
ISSN: 0300-9483

hal-00984683
https://hal.archives-ouvertes.fr/hal-00984683
DOI : 10.1111/bor.12039

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Continuous Global Positioning System (CGPS) position time series from eastern North America constrain the pattern and magnitude of regional crustal deformation. Initial analysis delineates consistent uplift patterns, as expected from glacial isostatic adjustment (GIA) predictions, but the associated horizontal deformation is not definitive, in part due to the short time periods for a significant number of the available stations. We employ an eigenpattern decomposition in order to define a unique, finite set of deformation patterns for this continuous GPS data. Similar in nature to the empirical orthogonal functions historically employed in the analysis of atmospheric and oceanographic phenomena, the method derives the eigenvalues and eigenstates from the diagonalization of the correlation matrix using a Karhunen-Loeve expansion (KLE). The KLE technique is used to identify the important modes in both time and space for the CGPS data, modes that potentially include signals such as horizontal and vertical GIA, tectonic strain, and seasonal effects. Here we filter both the vertical and horizontal velocity patterns on different spatiotemporal scales in order to study the potential geophysical sources, after the removal of correlated and random noise. The method is successful in disaggregating the linear vertical signal from more variable and less spatially correlated signals. The vertical and horizontal results are compared to the predictions of the ICE-3G GIA loading model with a number of plausible mantle viscosity profiles. The horizontal velocity analysis allows for qualitative differentiation between several potential GIA models and suggests that, with longer time series, this technique can be employed to remove correlated noise and improve estimates of crustal strain patterns and their sources.
ISSN: 0033-4553

hal-00795454
https://hal.archives-ouvertes.fr/hal-00795454
DOI : 10.1007/s00024-011-0420-1

Éditeur(s) : American Geophysical Union
Résumé : Thick forced regressive units on the wide continental shelf of the Gulf of Lions (western Mediterranean) recorded the composite effect of sea level changes during the Quaternary. They are mostly composed of coastal siliciclastic and bioclastic wedges showing clinoform geometry. These deposits have been intensively explored through high-resolution seismic investigations, but only recently it was possible to ground truth seismic interpretations, based on a long (100 m) borehole that crossed the succession and recovered a large part of the mainly sandy deposits (similar to 84% recovery). A multiproxy analysis of the sedimentary succession shows that (1) the stratal architecture of the shelf margin is defined by major bounding surfaces that are polygenic erosion surfaces associated with coarse-grained material incorporating abundant and diverse shells, including cold-water fauna (presently absent from the Mediterranean Sea). Between each surface, coarsening upward units with steep (up to 5 degrees) foresets are made of massive (more than 20 m thick) sands with possible swaley and hummocky cross-stratification, passing seaward to sands with muddy intervals and, further offshore, alternating highly boiturbated sands and silts. Each prograding wedge corresponds to a forced-regressive shoreface (or delta front/prodelta), deposited during the overall sea level falls occurring at (relatively slow) interglacial/glacial transition and therefore represents the record of 100 ka cyclicity. Higher-frequency Milankovitch cyclicities are also probably represented by distinct shoreface/delta front wedges; (2) detailed examination of the architecture and chronostratigraphy of the most recent sequence shows that minor bounding surfaces, corresponding to abrupt shallowing of sedimentary facies, separate downward stepping parasequences within the last 100 ka sequence. These events are in phase with millennial-scale glacial climatic and sea level variability, the downward shift surfaces corresponding to the falls during the coldest stadials. These deposits provide a comprehensive and well-constrained Pleistocene analog to the numerous shoreface deposits attributed to falling-stage systems tracts recognized in ancient stratigraphic records, studied at the outcrop scale.
Geochemistry Geophysics Geosystems - G3 (1525-2027) (American Geophysical Union), 2008-11 , Vol. 9 , N. Q11R05 , P. NIL_40-NIL_66

Droits : 2008 American Geophysical Union
http://archimer.ifremer.fr/doc/2008/publication-4929.pdf
DOI:10.1029/2007GC001854
http://archimer.ifremer.fr/doc/00000/4929/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Evidence of the impact of exposure to lowlevels of lead on children's health is increasing. Residential floor dust is the assumed origin of lead exposure by young children. In this study, we estimate the contribution of different lead sources to household interior floor dust contamination. We also estimate the within-home variability of interior floor dust lead loadings. A multilevel model was developed based on data collected in a French survey in 2008-2009 (484 housing units, 1834 rooms). Missing data were handled by multiple imputation using chained equations. The intra-home correlation between interior floor Log dust lead loadings was approximately 0.6. Dust lead from the landing of an apartment, mostly originating outside the building, was the major contributor to interior floor dust lead. Secondary contributors included the lead-based paint on exterior railings, track-in of the exterior soil of the children's play area into the dwelling, smoking inside the home, demolition of nearby old buildings and sites of pollution in the vicinity. Interior lead-based paint contaminated interior floor dust only in old and non-renovated dwellings. To reduce interior floor dust lead levels in the general population of dwellings, common areas should be maintained, and track-in from the outside should be limited as much as possible.
Science of the Total Environment

hal-00997780
https://hal.archives-ouvertes.fr/hal-00997780
DOI : 10.1016/j.scitotenv.2013.10.028