Éditeur(s) : HAL CCSD Elsevier
Résumé : Analyses of tree diversity and community composition in tropical rain forests are usually based either on general herbarium data or on a restricted number of botanical plots. Despite their high taxonomic accuracy, both types of data are difficult to extrapolate to landscape scales. Meanwhile, forestry surveys provide quantitative occurrence data on large areas, and are thus increasingly used for landscape-scale analyses of tree diversity. However, the reliability of these approaches has been challenged because of the ambiguity of the common (vernacular) names used by foresters and the complexity of tree taxonomy in those hyper-diverse communities.We developed and tested a novel approach to evaluate taxonomic reliability of forestry surveys and to propagate the resulting uncertainty in the estimates of several diversity indicators (alpha and beta entropy, Fisher-alpha and Sørensen similarity). Our approach is based on Monte-Carlo processes that simulate communities by taking into account the expected accuracy and reliability of common names. We tested this method in French Guiana, on 9 one-hectare plots (4279 trees – DBH ⩾ 10 cm) for which both common names and standardized taxonomic determinations were available. We then applied our method of community simulation on large forestry inventories (560 ha) at the landscape scale and compared the diversity indices obtained for 10 sites with those computed from precise botanical determination situated at the same localities.We found that taxonomic reliability of forestry inventories varied from 22% (species level) to 83% (family level) in this Amazonian region. Indices computed directly with raw forestry data resulted in incorrect values, except for Gini–Simpson beta-diversity. On the contrary, our correction method provides more accurate diversity estimates, highly correlated with botanical measurements, for almost all diversity indices at both regional and local scales. We obtained a robust ranking of sites consistent with those shown by botanical inventories.These results show that (i) forestry inventories represent a significant part of taxonomic information, (ii) the relative diversity of regional sites can be successfully ranked using forestry inventory data using our method and (iii) forestry inventories can valuably contribute to the detection of large-scale diversity patterns when biases are well-controlled and corrected.The tools we developed as R-functions are available in supplementary material and can be adapted with local parameters to be used for forest management and conservation issues in other regional contexts
ISSN: 0378-1127

hal-01204219
https://hal.archives-ouvertes.fr/hal-01204219
DOI : 10.1016/j.foreco.2014.05.045
PRODINRA : 286554

Éditeur(s) : HAL CCSD American Society of Clinical Oncology
Résumé : International audience
PURPOSE: Determining whether environmental estrogens are associated with the risk of prostate cancer may have important implications for our general understanding of this disease. The estrogenic insecticide chlordecone was used extensively in the French West Indies, contaminating the population for more than 30 years. We analyzed the relationship between exposure to chlordecone and the risk of prostate cancer. PATIENTS AND METHODS: We investigated 623 men with prostate cancer and 671 controls. Exposure was analyzed according to case-control status, using either current plasma concentration or a cumulative exposure index based on years of exposure. We genotyped two single-nucleotide polymorphisms (rs3829125 and rs17134592) in the gene encoding chlordecone reductase. RESULTS: We found a significant increase in the risk of prostate cancer with increasing plasma chlordecone concentration (odds ratio [OR], 1.77; 95% CI, 1.21 to 2.58 for the highest tertile of values above the limit of detection [LD]; P trend = .002) and for cumulative exposure index (OR, 1.73; 95% CI, 1.04 to 2.88 for the highest quartile; P trend = .004). Stronger associations were observed among those with a positive family history of prostate cancer and among those who had lived in a Western country. The rs3829125 and rs17134592 allele variants were in complete linkage disequilibrium and were found at low frequency (0.04). Among subjects with plasma chlordecone concentrations above the LD, carriers of the allele variants had a higher risk of prostate cancer (OR, 5.23; 95% CI, 0.82 to 33.32). CONCLUSION: These findings support the hypothesis that exposure to environmental estrogens increases the risk of prostate cancer.
ISSN: 0732-183X

inserm-00518099
http://www.hal.inserm.fr/inserm-00518099
DOI : 10.1200/JCO.2009.27.2153
PUBMED : 20566993

Éditeur(s) : HAL CCSD
Résumé : Anti-Müllerian hormone (AMH) is a member of the TGF-ß superfamily. AMH is well known for its role in Müllerian duct regression in male fetuses. Postnatally, AMH is secreted by granulosa cells (GCs) of small growing follicles (preantral and small antral). However, despite the increasing interest of ovarian AMH in clinics, little is known on its mechanism of action and its role in female reproductive tract. My PhD project focuses on the identification of AMH function in the female reproductive tract.AMH signals through a type II transmembrane serine/threonine kinase receptor (AMHR-II) which forms a complex with a type I serine/threonine kinase receptor (ActR-IA, BMPR-IA, BMPR-IB). The type II receptor phosphorylates serine and threonine residues of type I receptor. Once activated, the type I receptor phosphorylates the receptor-regulated Smads (R-Smad1/5/8) which interact with a common partner Smad4. The Smad complex accumulates into the nucleus and regulates target gene expression. This canonical signalling pathway is regulated at different levels, in particular by co-receptors which amplify or antagonize TGF-ß family members action. The type I receptors and R-Smads involved in AMH effects on post-natal GCs remain unknown. In addition, to date, no co-receptor has been found for AMH. To define the involvement of the different type I receptors, we used siRNA technology to inactivate Acvr1, Bmpr1a and Bmpr1b in GC. In parallele, we analysed GC extracted from conditional mutant mice for Acvr1 and Bmpr1a. We found that BMPR-IA is the most important type I receptor for AMH to transduce its signal in GC. A Smad-Gal4/UAS-luciferase reporter gene technology allowed us to show that Smad1 and 5 are involved in AMH signaling pathway. Recently, new BMPs coreceptors were found, RGMs for Repulsive Guidance Molecules. There are three RGMs : RGMa, b and c. Because AMH shares with BMPs its type I receptors and R-Smad proteins, we hypothesized that they also share the same co-receptors, the RGM. We showed that RGMb was the only one expressed in GC and after siRNA transfection we demonstrated that this coreceptor is not essential for AMH to transduce its signal.To date, only few AMH target genes have been identified. Aromatase (Cyp19a1) and LH receptor (Lhcgr) are down-regulated by AMH in rat and porcine GCs. We used micro-array technology (Affymetrix) by comparing Wt and knockout immature ovaries to find new AMH target genes. This experiment evidenced that Ovgp1 and Kcnj2 are two new potential AMH target genes in the ovary.The last part of my project was to define a potential role of AMH in murine uterus. Only one study showed that AMHR-II is expressed in the mouse myometrium. We showed that Amh gene is slightly expressed in uterus but the results are not confirmed at the protein level. Using PCR-array, we found a lot of differentially expressed genes between Wt and Amh KO uterus. Therefore, AMH could regulate uterine function through the modulation of different genes located in the myometrium.
L’hormone anti-Müllerienne (AMH) est un membre de la famille TGF-β impliquée dans la différenciation du tractus reproductif mâle. Elle est aussi exprimée par les cellules de la granulosa de l’ovaire adulte. Cependant, son rôle physiologique chez la femelle n’a pas encore été entièrement établi. Mon projet de thèse a pour objectif d’élucider le(s) rôle(s) de l’AMH dans le tractus reproductif femelle. L’AMH transduit ses effets par l’intermédiaire de deux récepteurs transmembranaires sérine/thréonine kinase : un récepteur de type II qui lui est spécifique (AMHR-II) et un récepteur de type I (ActR-IA, BMPR-IA, BMPR-IB) qu’elle partage avec les BMPs. Après fixation de l’hormone sur le récepteur de type II, celui-ci recrute et phosphoryle le récepteur de type I. Ce dernier phosphoryle à son tour les Smads spécifiques (Smad1, 5 et 8) qui s’associent à la Smad commune, Smad4. L’ensemble transloque dans le noyau et en association avec des facteurs de transcription régule les gènes cibles de l’hormone. L'utilisation de souris KO conditionnelles pour les récepteurs Acvr1 et Bmpr1a et d'une technique de siRNA dirigés contre chacun des trois récepteurs de type I a permis de mettre en évidence que le récepteur BMPR-IA est un acteur essentiel de la voie de signalisation de l'AMH dans les cellules de la granulosa. Pour déterminer la ou les Smad(s) impliquées, une technique de gènes rapporteurs, Smad-Gal4/UAS-luciférase, a été utilisée. Nous avons pu montrer que les Smad1 et 5 sont importantes pour la transduction du signal de l'AMH dans les cellules de la granulosa. Récemment des corécepteurs aux BMPs, les Repulsive Guidance Molecule (RGMs), ont été mis en évidence. L’AMH partageant sa voie de signalisation avec les BMPs, nous avons cherché à déterminer si ces corécepteurs pouvaient également intervenir dans la voie de signalisation de l’AMH. Il existe 3 types de RGMs: RGMa, RGMb et RGMc. Nous avons montré en q-PCR que seul RGMb est exprimé dans les cellules de la granulosa alors que les 3 RGMs sont exprimés dans l’ovaire. L'utilisation de siRNA dirigés contre RGMb a permis de montrer que ce récepteur n'est pas nécessaire à la transduction du signal de l'AMH. Actuellement, seuls deux gènes cibles de l’AMH sont connus dans les cellules de la granulosa : l’aromatase et le récepteur LH. Nous avons réalisé des analyses de puces à ADN (ou micro-array) pour décrire de nouveaux gènes cibles de l'AMH. L'analyse des puces a permis de décrire de nouveaux gènes régulés par cette hormone tels qu’Ovgp1 ou Kcnj2. La dernière partie de mon projet visait à déterminer un rôle potentiel de l'AMH dans l'utérus. En effet, le récepteur de cette hormone est exprimé dans le myomètre utérin de souris permettant de supposer qu’elle peut agir sur cet organe. Nous avons pu mettre en évidence une expression faible du gène de l’Amh dans l’utérus. En revanche, l’expression et la localisation de la protéine restent encore à définir. Une expérience de PCR-array a permis de montrer que de nombreux gènes sont différentiellement exprimés entre l’utérus Wt et l’utérus KO Amh. Ceci indique que l’AMH jouerait un rôle sur la régulation de la fonction utérine qu’elle soit exprimée ou non dans cet organe.
https://tel.archives-ouvertes.fr/tel-00989662

Droits : info:eu-repo/semantics/OpenAccess
NNT : 2014PA11T014
tel-00989662
https://tel.archives-ouvertes.fr/tel-00989662
https://tel.archives-ouvertes.fr/tel-00989662/document
https://tel.archives-ouvertes.fr/tel-00989662/file/VA_SEDES_LAURIANE_03042014.pdf

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
The number and amount of man-made chemicals present in the aquatic environment has increased considerably over the past 50 years. Among these contaminants, endocrine-disrupting chemicals (EDCs) represent a significant proportion. This family of compounds interferes with normal hormonal processes through multiple molecular pathways. They represent a potential risk for human and wildlife as they are suspected to be involved in the development of diseases including, but not limited to, reprotoxicity, metabolic disorders, and cancers. More precisely, several studies have suggested that the increase of breast cancers in industrialized countries is linked to exposure to EDCs, particularly estrogen-like compounds. Estrogen receptors alpha (ERα) and beta (ERβ) are the two main transducers of estrogen action and therefore important targets for these estrogen-like endocrine disrupters. More than 70% of human breast cancers are ERα-positive and estrogen-dependent, and their development and growth are not only influenced by endogenous estrogens but also likely by environmental estrogen-like endocrine disrupters. It is, therefore, of major importance to characterize the potential estrogenic activity from contaminated surface water and identify the molecules responsible for the hormonal effects. This information will help us understand how environmental contaminants can potentially impact the development of breast cancer and allow us to fix a maximal limit to the concentration of estrogen-like compounds that should be found in the environment. The aim of this review is to provide an overview of emerging estrogen-like compounds in the environment, sum up studies demonstrating their direct or indirect interactions with ERs, and link their presence to the development of breast cancer. Finally, we emphasize the use of in vitro and in vivo methods based on the zebrafish model to identify and characterize environmental estrogens.
ISSN: 2073-4425

hal-01616486
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616486
DOI : 10.3390/genes8090229
PUBMED : 28914763
PUBMEDCENTRAL : PMC5615362

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Cet article met en lumière le processus d’expansion de l’espace touristique en Indonésie. Dans ce vaste archipel qui se caractérise par une très grande diversité environnementale et culturelle, la « Culture » constitue traditionnellement l’axe de communication majeur. Bien qu’étant un « Monde d’une diversité infinie », le pays connaît pourtant une grande concentration spatiale du tourisme. Bali est depuis toujours la première destination touristique du fait de sa renommée et de son antériorité en matière d’infrastructures. Sous le coup de la croissance des arrivées touristiques internationales que l’Indonésie a connu entre 1969 et 1997, de la volonté de l’Etat de diffuser l’activité touristique dans d’autres régions de l’archipel, de la quête de « culture » d’une partie des touristes, un mouvement d’expansion va bien avoir lieu, notamment vers des minorités ethniques « primitives ». Ce mouvement d’expansion, bien que marginal par rapport aux flux principaux, est cependant remis en cause avec la crise touristique que l’Indonésie traverse depuis 1998, dont l’attentat de Bali en octobre 2002 fut le point d’orgue.
This article focuses on the process of expansion of tourism in Indonesia. In this vast archipelago of immense environmental and cultural diversity, “culture” has been its main tourist promotion theme. Even though Indonesia is a “world of infinite diversity”, its tourist spots are highly concentrated in a few regions. Undoubtedly Bali remains THE place to visit given its fame and early infrastructural developments. However, due to the phenomenal growth in the numbers of international tourists between 1969 and 1997, the State's desire to diffuse tourism to other regions of the Archipelago, and the quest for “culture” by some tourists - tourism in Indonesia has expanded, especially to regions of “primitive” ethnic minorities. This expansion, even if marginal related to the mains streams, has been seriously threatened since 1998 by the crisis in tourism in Indonesia - of which the bombing in Bali in October 2002 was the pinnacle.
Indonésie

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1132
http://journals.openedition.org/etudescaribeennes/1132

Éditeur(s) : HAL CCSD Cambridge University Press
Résumé : International audience
Background: Most of the 29 Siganidae species are widely distributed through the Indo-Pacific area. In New Caledonia, these family was represented by 12 species. The present report is the first record of Siganus randalli in New Caledonian waters and provide information on its diet. Methods: Three specimens of Siganus randalli were caught in shallow mangrove waters of the southern part of New Caledonia. Their stomach contents and isotopic signatures (carbon and nitrogen) were analyzed and compared to others siganids species. Results and conclusion: This note provides the most southerly record of the rabbitfish Siganus randalli, which extends its distribution range by 1200 km southward and 1300 km southwest. The data on its diet, when compared with other co-occurring or more reef-associated siganid species, provide information on feeding processes and ecological functions associated with its mangrove habitat.
EISSN: 1755-2672

Droits : http://creativecommons.org/licenses/by/
hal-01369012
http://hal.upmc.fr/hal-01369012
http://hal.upmc.fr/hal-01369012/document
http://hal.upmc.fr/hal-01369012/file/art_10.1186_s41200-016-0082-x.pdf
DOI : 10.1186/s41200-016-0082-x

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Although they are famous among Earth scientists, the Lherz peridotites are exposed within geological formations of the North Pyrenean Zone (NPZ) still lacking detailed investigations. Our study focuses on the metasediments of the Aulus basin hosting the Lherz peridotite body and associated ultramafic fragments of smaller size. The new data set comprises of structural analysis and detailed geological mapping of the massive Mesozoic marbles that form the prerift sequence typical of the NPZ and of the ultramafic-rich clastic breccia formations surrounding the peridotite bodies. The massive marbles display an evolution from hot and ductile to cold and brittle deformation, indicative of an exhumation process ending with the sedimentary reworking of both the deformed Mesozoic metasediments and the exhumed ultramafic rocks. Crystal Preferred Orientations (CPO) measured in the marbles support a deformation mechanism by dislocation creep of calcite, which is dominant between 400 8C and 600 8C; these deformation temperatures are within the range determined earlier by Clerc et al. (2015), using RSCM (Raman Spectroscopy of Carbonaceous Material) geothermometry. As a consequence, we better describe the transition from ductile to brittle deformation in the prerift marbles and clarify the origin of the syn-rift breccias. Due to continuous exhumation along detachments' faults, the brecciated metamorphic carbonates of the prerift NPZ sedimentary cover were passively uplifted towards shallower levels and progressively unroofed, while transported passively on the back of the exhumed ultramafic footwall. These results are consistent with the recent interpretations of the North Pyrenean peridotites as remnants of subcontinental mantle rocks exhumed within the pre-Pyrenean rift system. We emphasize the importance of tectonic decoupling between the Mesozoic sedimentary cover and the Palaeozoic basement, which leads to the juxtaposition of metamorphosed and deformed Mesozoic Please cite this article in press as: Lagabrielle Y, et al. Very high geothermal gradient during mantle exhumation recorded in mylonitic marbles and carbonate breccias from a Mesozoic Pyrenean palaeomargin (Lherz area, North Pyrenean Zone, France). C. R. Geoscience (2016), http://dx.
ISSN: 1631-0713

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01285079
https://hal-insu.archives-ouvertes.fr/insu-01285079
https://hal-insu.archives-ouvertes.fr/insu-01285079/document
https://hal-insu.archives-ouvertes.fr/insu-01285079/file/1-s2.0-S1631071315002060-main.pdf
DOI : 10.1016/j.crte.2015.11.004

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
The Michaelis-Menten enzymatic reaction is sufficient to perceive many subtleties of network modeling, including the concentration and time scales separations, the formal equivalence between bulk phase and single-molecule approaches, or the relationships between single-cycle transient probabilities and steady state rates. Seven methods proposed by different authors and yielding the same famous Michaelis-Menten equation, are selected here to illustrate the kinetic and probabilistic use of rate constants and to review basic techniques for handling them. Finally, the general rate of an ordered multistep reaction, of which the Michaelis-Menten reaction is a particular case, is deduced from a Markovian approach.
Journal of Mathematical Chemistry

hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806/document
ARXIV : 1312.5468
DOI : 10.1007/s10910-013-0237-5

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The parasitic life cycle of Leishmania includes an extracellular promastigote stage that occurs in the gut of the insect vector. During that period, the sucrose metabolism and more specifically the first glycosidase of this pathway are essential for growth and survival of the parasite. We investigated the expression of the invertase BfrA in the promastigote and amastigote stages of three parasite species representative of the three various clinical forms and of various geographical areas, namely Leishmania major, L. donovani and L. braziliensis. Thereafter, we cloned, overexpressed and biochemically characterized this invertase BfrA from L. major, heterologously expressed in both Escherichia coli and L. tarentolae. For all species, expression levels of BfrA mRNA were correlated to the time of the culture and the parasitic stage (promastigotes > amastigotes). BfrA exhibited no activity when expressed as a glycoprotein in L. tarentolae but proved to be an invertase when not glycosylated, yet owing low sequence homology with other invertases from the same family. Our data suggest that BfrA is an original invertase that is located inside the parasite. It is expressed in both parasitic stages, though to a higher extent in promastigotes. This work provides new insight into the parasite sucrose metabolism
ISSN: 0008-6215

hal-01187142
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187142
DOI : 10.1016/j.carres.2015.07.001
PUBMED : 26279524

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
BACKGROUND AND AIMS: Infection by hepatitis C virus is a worldwide health problem. An inadequate Th2 cytokine response promotes the fibrosis-cirrhosis fate. Immune-modulating molecules favoring a Th2 profile, such as HLA-G molecules of the HLA class Ib family, may play a role in chronic hepatitis. HLA-G contributes to the escape of tumors, and their involvement in viral infections has been increasingly described. The aim of this work was to study the expression of HLA-G in the liver, its cellular source and its regulation in cases of chronic C hepatitis. METHODS: HLA-G cells in blocks of liver derived from patients infected with HCV were labeled by immunohistochemistry and enumerated. Double immunofluorescence allowed the identification of the cellular source. HLA-G secretion by a human mast cell line was quantified by ELISA after various stimulations. After treatment with IFN-α real-time PCR was performed to determine the kinetics of cytokine expression profiles, followed by heat map clustering analysis. RESULTS: The number of HLA-G + cells was significantly associated with the area of fibrosis. For the first time, we identify the HLA-G+ cells as being mast cells. HLA-G secretion was significantly induced in human mast cells stimulated by IL-10 or interferons of class I. The transcriptome of the secretome of this cell line stimulated by IFN-α revealed that i) the HLA-G gene is upregulated late, ii) T lymphocytes and NK cells are recruited. CONCLUSIONS: These findings suggest an autocrine loop in the genesis of HCV liver fibrosis, based on mast cells expressing HLA-G.
ISSN: 0168-8278

hal-00874106
https://hal.archives-ouvertes.fr/hal-00874106
https://hal.archives-ouvertes.fr/hal-00874106/document
https://hal.archives-ouvertes.fr/hal-00874106/file/Amiot-Expression-HLA-G-revised.pdf
DOI : 10.1016/j.jhep.2013.09.006

Éditeur(s) : HAL CCSD Sociedade Entomológica do Brasil
Résumé : Variations in diel activity among hyperdiverse tropical communities of moths, despite representing a key component of niche partitioning between species, have barely been studied so far. Using light trapping from dawn to sunset over a 1-year period in French Guiana, we investigated these variations within and between two families of moths (Sphingidae and Saturniidae). Our results revealed contrasting patterns in flight activity at night between Sphingidae and Saturniidae. Sphingidae reached their peak in species richness and abundance between 7:00 and 8:00 p.m., followed by a decrease around 11:00 p.m. to midnight, whereas Saturniidae were continuously present throughout the night, with a peak around midnight. In addition, we found changes in diel activity among some of the most common genera in each family, highlighting distinct behavioral, physiological, and functional traits among taxa. Given differences in flight activity at different taxonomic levels, it is strongly recommended to monitor by light trapping throughout the night to effectively sample saturniid and sphingid assemblages, even though the activity of Sphingidae sharply declines after midnight. These results improve the general natural history information of tropical moths and reinforce the need of further research on the ecological and taxonomic consequences of differences in diel activity.
ISSN: 1519-566X

hal-01536447
https://hal.archives-ouvertes.fr/hal-01536447
DOI : 10.1007/s13744-014-0264-3
PRODINRA : 320714

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
The main familial focal epilepsies are autosomal dominant nocturnal frontal lobe epilepsy, familial temporal lobe epilepsy and familial focal epilepsy with variable foci. A frameshift mutation in the DEPDC5 gene (encoding DEP domain-containing protein 5) was identified in a family with focal epilepsy with variable foci by linkage analysis and exome sequencing. Subsequent pyrosequencing of DEPDC5 in a cohort of 15 additional families with focal epilepsies identified 4 nonsense mutations and 1 missense mutation. Our findings provided evidence of frequent (37%) loss-of-function mutations in DEPDC5 associated with a broad spectrum of focal epilepsies. The implication of a DEP (Dishevelled, Egl-10 and Pleckstrin) domain-containing protein that may be involved in membrane trafficking and/or G protein signaling opens new avenues for research.
ISSN: 1061-4036

hal-01544763
https://hal.archives-ouvertes.fr/hal-01544763
DOI : 10.1038/ng.2601

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Scientific fisheries surveys routinely identify a large diversity of commercial and non-commercial benthic megainvertebrates that could provide useful information for Marine Strategy Framework Directive (MSFD) descriptors. Species is obviously the basic taxonomic level to which most ecological studies and theories refer. Identification at this level of organization is indeed always preferred over any other taxonomic level. Nevertheless, aggregation of species to higher taxonomic levels may be unavoidable sometimes, since errors of identification are known or suspected to occur in many surveys. Using analyses of taxonomic sufficiency (identification of organisms at various taxonomic resolutions) and groups of morphospecies (taxa identified easily by non-experts on the basis of evident morphological traits), this study aims to quantify the loss of ecological information incurred by partial identification of benthic megafauna in bottom trawl surveys in order to put such data to good use. The analyses were conducted on five scientific surveys representing a large range of geographical areas (from 150 km2 to 150 000 km2) and environmental conditions. Results show that genus, family and, particularly, morphospecies are good surrogates for species identification in community analyses. We suggest that bottom trawl surveys can provide reliable megafauna data that may usefully complete those obtained by grab surveys. The use of morphospecies could lead to new strategies, combining different datasets to provide indicators for MSFD descriptors (e.g. D6).
Continental Shelf Research (0278-4343) (Pergamon-elsevier Science Ltd), 2014-01 , Vol. 72 , P. 1-9

Droits : 2013 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00162/27309/25538.pdf
DOI:10.1016/j.csr.2013.10.015
http://archimer.ifremer.fr/doc/00162/27309/

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Arthropods represent most of global biodiversity, with the highest diversity found in tropical rain forests. Nevertheless, we have a very incomplete understanding of how tropical arthropod communities are assembled. 2. We conducted a comprehensive mass sampling of arthropod communities within three major habitat types of lowland Amazonian rain forest, including terra firme clay, white-sand and seasonally flooded forests in Peru and French Guiana. We examined how taxonomic and functional composition (at the family level) differed across these habitat types in the two regions. 3. The overall arthropod community composition exhibited strong turnover among habitats and between regions. In particular, seasonally flooded forest habitats of both regions comprised unique assemblages. Overall, 17.7% (26 of 147) of arthropod families showed significant preferences for a particular habitat type. 4. We present a first reproducible arthropod functional classification among the 147 taxa based on similarity among 21 functional traits describing feeding source, major mouthparts and microhabitats inhabited by each taxon. We identified seven distinct functional groups whose relative abundance contrasted strongly across the three habitats, with sap and leaf feeders showing higher abundances in terra firme clay forest. 5. Our novel arthropod functional classification provides an important complement to link these contrasting patterns of composition to differences in forest functioning across geographical and environmental gradients. This study underlines that both environment and biogeographical processes are responsible for driving arthropod taxonomic composition while environmental filtering is the main driver of the variance in functional composition.
ISSN: 0021-8790

hal-01531619
https://hal.archives-ouvertes.fr/hal-01531619
PRODINRA : 349695
PUBMED : 26346553
DOI : 10.1111/1365-2656.12445

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Characterizing the trophic relationships between large herbivores and the outstanding plant diversity in rainforest is a major challenge because of their elusiveness. This is crucial to understand the role of these herbivores in the functioning of the rainforest ecosystems. We tested a non-invasive approach based on the high-throughput sequencing of environmental samples using small plant plastid sequences (the trnL P6 loop) and ribosomal ITS1 primers, referred to as DNA metabarcoding, to investigate the diet of the largest neotropical herbivore, the lowland tapir. Sequencing was performed on plant DNA extracted from tapir faeces collected at the Nouragues station, a protected area of French Guiana. In spite of a limited sampling, our approach reliably provided information about the lowland tapir's diet at this site. Indeed, 95.1% and 74.4% of the plant families and genera identified thanks to the trnL P6 loop, respectively, matched with taxa already known to be consumed by tapirs. With this approach we were able to show that two families and eight new genera are also consumed by the lowland tapir. The taxonomic resolution of this method is limited to the plant family and genera. Complementary barcodes, such as a small portion of ITS1, can be used to efficiently narrow identifications down to the species in some problematic families. We will discuss the remaining limitations of this approach and how useful it is at this stage to unravel the diet of elusive rainforest herbivores and better understand their role as engineers of the ecosystem.
ISSN: 1932-6203

hal-01190578
https://hal.archives-ouvertes.fr/hal-01190578
PRODINRA : 209109
PUBMED : 23560107
DOI : 10.1371/journal.pone.0060799

Résumé : L'écart de la représentation politique des femmes entre la Guadeloupe et la Martinique a été à l'origine de notre interrogation sur la socialisation politique des femmes aux Antilles françaises. En interrogeant des élus guadeloupéens et martiniquais (hommes et femmes) nous avons tenté de comprendre en quoi la socialisation politique pouvait expliquer le niveau d'engagement des femmes en politique. Le·genre étant le concept su lequel se fonde la société pour justifier la séparation et la hiérarchisation des individus masculins et féminins c'est par le biais du processus de socialisation sexué que les individus apprennent leurs rôles genrés. Si cette séparation des hommes et des femmes dans des sphères distinctes (publique et privée) tend à freiner le femmes dans leur engagement politique, les élues antillaises n'auraient pas été majoritairement touchées pas une socialisation politique sexuée. Au contraire, la matrifocalité présente aux Antilles françaises aurait permi un certain nombre de femmes d'être socialisée similairement aux hommes. Mais la société empreinte de valeurs genrées aurait tout de même freiné les femmes dans l'entame d'une carrière politique. Si la famille transmet des valeurs politiques de base, que les partis politiques n'ont qu'un rôle relatif d'agent socialisateur le monde associatif semble être un agent de socialisation déterminant en termes d'engagement politique, un révélateur et un propulseur d'hommes et de femmes dans le monde politique. Socialisés aux valeurs politiques, ces élus deviennent également des agents de socialisation politique pour les jeunes qui peuvent représenter la relève politique.
Differences in the political representation of women between Guadeloupe and Martinique were the source c our questioning about the political socialisation of women in the French West Indies. Sy interviewing elected men and women in Guadeloupe and Martinique, we tried to understand how political socialization coul explain the level of involvement of women in politics. With gender being the concept from which any societ justifies the process of separation and hierarchy between male and female individuals, it is through the sexual socialization process that individuals learn their gendered raies. If this separation between men and women in both public and private spheres tends to impede women in their political commitment, elected women of the French West Indies have not been disproportionately affected by sexual political socialization. On the contrary, the matrifocality in the French West Indies would have allowed a number of women to be socialise dsimilarly to men. However, the strong gendered values of this society would have still hampered women at the beginning of their political career. While family provides basic political values, political parties have only a relative role of socializing agent. However, associations seem to be a decisive/crucial socializing agent in terms of political commitment, acting as a career booster for men and women in politics. Socialized to political values, these elected individuals become in turn factors of political socialization for young people whe represent the next political generation.

http://www.theses.fr/2012AGUY0498/document

Éditeur(s) : Editions de l’institut Universitaire Européen de la Mer
Résumé : Epsilonematids are epifaunal nematodes characterized by an epsilon-shaped body and the presence of ambulatory setae, which are used in their locomotion. Nematodes belonging to this family were recently found in deep sea, especially in cold-water coral and seamount ecosystems. Akanthepsilonema oceanopolis sp. nov. (Nematoda: Epsilonematidae) is described from sediments of the Condor Seamount (North-East Atlantic Ocean) at 206 m water depth. Its main features are a heterogeneous cuticule with large horn-like dorsal spines both in anterior and in posterior regions; the presence of eight subcephalic setae arranged in two rows and the ratio maximum/minimum body diameter larger than two. The taxonomic position of this new species within the genus is discussed and a key to all species from the genus was added.
Les nématodes de la famille des Epsilonematidae se caractérisent par un corps en forme d’epsilon et par la présence de soies ambulatoires servant à la mobilité. Des représentants de cette famille ont récemment été découverts en environnement marin profond, notamment au niveau des récifs de coraux d’eau froide et des monts sous-marins. La nouvelle espèce Akanthepsilonema oceanopolis (Nematoda : Epsilonematidae) est décrite des sédiments du mont sous-marin Condor, situé dans l’Atlantique nord-est, collectés à 206 m de profondeur. Ses principaux caractères sont la présence d’une cuticule hétérogène munie de grandes épines dorsales recourbées, à la fois dans les régions antérieure et postérieure ; la présence de quatre paires de soies subcéphaliques disposées en deux rangées et un ratio diamètre maximal/diamètre minimal du corps supérieur à deux. La position taxinomique de cette espèce au sein du genre Akanthepsilonema est discutée et une clé des espèces connues du genre est donnée.
An aod - les cahiers naturalistes de l’Observatoire marin (2263-5718) (Editions de l’institut Universitaire Européen de la Mer), 2014 , Vol. 3 , N. 1 , P. 1-10

Droits : Editions de l’institut Universitaire Européen de la Mer
http://archimer.ifremer.fr/doc/00199/31050/29470.pdf
http://archimer.ifremer.fr/doc/00199/31050/

Résumé : En occupant un espace social privilégié, la médecine traditionnelle et les diverses pratiques qui y sont liées, sont de moins en moins marginalisées, de plus en plus admises comme ressources et la société leur devient du même coup permissive. La tolérance sociale est relativement forte ». Cette lecture de la situation de la médecine traditionnelle et de sa réception dans la société est celle de l’anthropologue et médecine martiniquais M. Yoyo. Elle évoque la réalité de la médecine créole dans l’espace antillais et dit l’intérêt que lui portent ceux qui en font usage.L’objectif de cette recherche est de poser la question de la transmission du savoir médicinal en contexte martiniquais : transmission des tradipraticiens vers les profanes ; transmission entre professionnels de cette médecine. Autrement dit comment se fait l’apprentissage si apprentissage il y a, de ce savoir traditionnel, jalousement gardé par ceux qui l’exercent ? La dimension magico-religieuse de ce savoir influe-t-elle sur sa transmission ? Quel est le rôle de la famille dans l’éducation et la transmission de ces pratiques ? Quelle est la connaissance profane accessible à tous et que détiennent certaines familles ? Celle-ci répond-elle aux attentes de la médecine traditionnelle et comment les familles procèdent-elles à sa transmission ? Quelle contribution l’institution scolaire apporte-t-elle à la sauvegarde de ce patrimoine ? Ce questionnement nous amène à nous interroger sur les pratiques en matière de médecine des Martiniquais et à considérer la coexistence entre savoir traditionnel et savoir rationnel dit moderne.On ne peut faire l’économie de ces analyses si on veut appréhender de façon objective le problème de la transmission de la médecine créole, de sa sauvegarde par – et pour – les générations montantes, en raison de l’aspect mémoriel de cette pratique thérapeutique mais également en raison de son efficacité et du potentiel important qu’elle représente pour la santé dans les années qui viennent.
By occupying a privileged social space, traditional medicine and the diverses practices related to the field are less and less marginalized, more and more accepted as resources, thus society is gradually becoming more tolerant towards those practices. The social tolerance is relatively strong”. This perception of the present situation of traditional medicine and of its reception in society is proposed by M. Yoyo, French anthropologist and physician from Martinique. It speaks of the reality of traditional medicine in the west Indians context and highlights the positive affects on those who make use of it. The objective of this research is to explore the question of the transmission of medicinal knowledge within the confines of Martinique: transmission by traditionalists towards nonprofessionals as well as transmission among professionals in the fields of medicine. In other words, what learning, if any, still exists of this traditional knowledge faithfully kept by those practiced it? To what extent does the magical-religious experience influence the transmission of this knowledge? What is the role of the family in the education and the transmission of those practices? How much of this profane knowledge is accessible to all and to what extent is it practiced by families? Does the latter respond to the demands of traditional medicine? How do families proceed with the process of transmission. What contribution does the school make towards preserving this tradition ? The above questions provoke reflection on the medicinal practices of the people of Martinique and of the possible coexistence of traditional knowledge and modern or rational knowledge. These questions are inevitable if we want to progress with objectivity in the transmission of Creole medicine and of its preservation for future generations, as a form of safeguarding the memory of this therapeutic practice. However, they also help to focus on the level of its effectiveness and the potential importance that it represents in ensuring a healthy environment in the coming years.

http://www.theses.fr/2015AGUY0865/document

Résumé : La thèse est consacrée à la recherche des catastrophes marines (tsunamis, ondes de tempête) dans les Antilles françaises, en utilisant des modèles analytiques et numériques de mécanique des fluides. L'accent est mis sur le développement de modèles de mouvement de glissements de terrain et des vagues causées par ces glissements. Le modèle le plus simple du glissement de terrain «solide block» est utilisé pour évaluer les caractéristiques des flux pyroclastiques du volcan Soufrière-Hills (Montserrat). Un modèle plus complexe de modélisation de glissement de terrain (modèle de Savage-Hutter) a été étudié analytiquement, donnant ainsi une nouvelle famille de solutions exactes décrivant le mouvement de l'écoulement par gravité non linéaire dans une vallée ou dans un canyon sous-marin. Le modèle comprend des ondes simples (Riemann waves),le cas d'un barrage qui cède (dam-break problem), des solutions auto-similaires dans la M-fonne et « chapeaux paraboliques ». Grâce à la théorie linéaire de l'eau peu profonde nous avons étudié le processus de génération de tsunamis par des glissements de terrain de volume variable, se déplaçant à une vitesse variable dans un bassin de profondeur variable. Dans le cas d'un fond marin particulier (cas sans "réflexion"), les phénomènes de résonnance ont été étudiés dans un bassin à profondeur variable. Nous avons utilisé des méthodes numériques pour la résolution non-linéaire des équations des eaux peu profondes afin d'analyser des catastrophes marines réelles (les ondes de tempête causées par le cyclone Lili en 2002, le tsunami volcanique de 2003 à Montserrat) et probables (un tsunami prés des côtes de la Martinique). Des données sur les catastrophes
The dissertation is devoted to research in the field of marine natural hazards (tsunamis, storm surges) in the French West Indies, using analytical and numerical models of fluid mechanics. Emphasis is placed on the development of models of landslide motion and generated tsunami waves. The simple "solid block" model is used to evaluate the characteristics of pyroclastic flow Soufriere Hills volcano (Montserrat). The "fluid model" of a landslide (so called Savage-Hutter model) is studied analytically; within this model a new family of exact solutions that describe the motion of nonlinear gravity flow in a valley or underwater canyon is found: nonlinear Riemann wave, dan break problem, self-similar solutions (M - wave and parabolic cap). In the framework of the linear shallow water theory the process of generation of tsunami waves by landslides of variable volume moving with variable velocity above the basin of variable depth is studied. For the specific bottom profile ("reflectionless" one) the resonant phenomena is investigated in the basin of variable depth. Numerical methods are used to analyze marine hazards: historical (storm surges, caused by Cyclone LILI in 2002; volcanic tsunami 2003 on Montserrat) and possible events (possible tsunami of the coast of Martinique). Various data on marine natural disasters are obtained during field surveys (volcanic tsunami in 2003, stonn surges caused by Hurricane Dean in 2007). Designed catalogs of tsunamis and storm surges are created based on results of numerical modeling and field studies; some statistical analysis is perfomed

http://www.theses.fr/2011AGUY0435/document

Résumé : Dans cette thèse, nous présentons deux modèles mathèmatiques qui simulent la dynamique d'une épidémie de dengue à Cuba. Le premier modèle est décrit par un système d'équations différentielles ordinaires dans le but d'estimer certains paramètres essentiels dans l'évolution de l'èpidérnie. Le deuxième modèle utilise une inclusion différentielle afin de simuler la dynamique sous incertitudes. Nous passons aussi en revue une famille de modèles d'équations différentielles pour l'épidémie de VIH/SIDA à Cuba et nous reformulons l'un de ces modèles en une inclusion différentielle. En outre, pour analyser le comportement de ces deux épidémies et l'effet de l'intervention nous développons un algorithme pratique pour le calcul des ensembles atteignables des inclusions différentielles, qui fournit un cadre mathématique nous permettant de faire des prédictions appropriées de toutes les variables d'état des modèles
Ln this work we present two mathematical models that simulate the dynamics of an epidemic outbreak of dengue disease in Cuba. The i first model is described by a system of ordinary differential equations with the purpose of estimaling some essential parameters in the evolution of the epidemie. The second model uses a differential inclusion in order to simulate the dynamic under uncertainties. Also, we review a family of ordinary differential equations models of HIV/AIDS epidemic in Cuba and one of these models is reformulated as a differential inclusion. In addition, to analyze the behavior of these two epidemies and the effect of intervention, we develop a practical algorithm for the computation of the reachable sets of the differential inclusions, providing a mathematical framework allowing us to make suitable predictions of aII state variables of the models at a future time.

http://www.theses.fr/2011AGUY0413