Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
We calculated the seismic properties of 47 mantle xenoliths from 9 kimberlitic pipes in the Kaapvaal craton based on their modal composition, the crystal-preferred orientations (CPO) of olivine, ortho- and clinopyroxene, and garnet, the Fe content of olivine, and the pressures and temperatures at which the rocks were equilibrated. These data allow constraining the variation of seismic anisotropy and velocities within the cratonic mantle. The fastest P and S2 wave propagation directions and the polarization of fast split shear waves (S1) are always subparallel to olivine [100] axes of maximum concentration, which marks the lineation (fossil flow direction). Seismic anisotropy is higher for high olivine contents and stronger CPO. Maximum P wave azimuthal anisotropy (AVp) ranges between 2.5 and 10.2% and the maximum S wave polarization anisotropy (AVs), between 2.7 and 8%. Changes in olivine CPO symmetry result in minor variations in the seismic anisotropy patterns, mainly in the apparent isotropy directions for shear wave splitting. Seismic properties averaged over 20 km-thick depth sections are, therefore, very homogeneous. Based on these data, we predict the anisotropy that would be measured by SKS, Rayleigh (SV) and Love (SH) waves for five endmember orientations of the foliation and lineation. Comparison to seismic anisotropy data from the Kaapvaal shows that the coherent fast directions, but low delay times imaged by SKS studies, and the low azimuthal anisotropy with with the horizontally polarized S waves (SH) faster than the vertically polarized S wave (SV) measured using surface waves are best explained by homogeneously dipping (45°) foliations and lineations in the cratonic mantle lithosphere. Laterally or vertically varying foliation and lineation orientations with a dominantly NW-SE trend might also explain the low measured anisotropies, but this model should also result in backazimuthal variability of the SKS splitting data, not reported in the seismological data. The strong compositional heterogeneity of the Kaapvaal peridotite xenoliths results in up to 3% variation in density and in up to 2.3% variation of Vp, Vs, and Vp / Vs ratio. Fe depletion by melt extraction increases Vp and Vs, but decreases the Vp / Vs ratio and density. Orthopyroxene enrichment due to metasomatism decreases the density and Vp, strongly reducing the Vp / Vs ratio. Garnet enrichment, which was also attributed to metasomatism, increases the density, and in a lesser extent Vp and the Vp / Vs ratio. Comparison of density and seismic velocity profiles calculated using the xenoliths' compositions and equilibration conditions to seismological data in the Kaapvaal highlights that (i) the thickness of the craton is underestimated in some seismic studies and reaches at least 180 km, (ii) the deep sheared peridotites represent very local modifications caused and oversampled by kimberlites, and (iii) seismological models probably underestimate the compositional heterogeneity in the Kaapvaal mantle root, which occurs at a scale much smaller than the one that may be sampled seismologically.
ISSN: 1869-9510

hal-01053516
https://hal.archives-ouvertes.fr/hal-01053516
DOI : 10.5194/se-5-45-2014

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In the Tahalgha district (southwestern Hoggar, Algeria), the Cenozoic volcanism has sampled subcontinental mantle beneath two crustal terranes that collided during the Pan-African orogeny: the “Polycyclic Central Hoggar” to the east and the “Western Hoggar” to the west. Two major lithospheric shear zones separate these terranes: the “4°35” and the “4°50” faults. Mantle xenoliths were collected between the two faults and across the 4°35 fault. In addition to a range in equilibrium temperatures and chemical compositions reported elsewhere, the samples show variations in their microstructures and crystallographic preferred orientations. Equilibrium temperatures and geochemical characteristics allow dividing them into low — (LT; 700–900 °C), intermediate — (IT; 900–1000 °C), and high-temperature (HT; 1000–1100 °C) xenoliths. The LT and IT peridotites occur on both sides of the 4°35 fault; they are usually coarse-grained. HT xenoliths are present only east of the 4°35 fault, in the narrow domain stuck between the two faults; they are fine-grained and extensively affected by annealing and melt–rock reactions. Microstructures and crystallographic textures indicate that deformation in the LT- and IT-xenoliths occurred through dislocation creep under relatively high-temperature, low-pressure conditions, followed by post-kinematic cooling. The fine-grained HT-xenoliths were deformed under relatively high-stress conditions before being annealed.Combining microstructural and CPO data with petrological and geochemical informations suggests that: (1) the LT xenoliths are remnants of the Neoproterozoic lithospheric mantle that preserved microstructural and chemical characteristics inherited from the Pan-African orogeny, and (2) the HT xenoliths record localized Cenozoic deformation associated with melt channeling through feed-back processes that culminated in the formation of high-permeability porous-flow conduits. Limited grain-growth in HT xenoliths suggests that advective heating of melt conduits was transient and rapidly followed by thermal relaxation due to conductive heat loss into wall-rock peridotites represented by the IT xenoliths, then by exhumation due to volcanic activity.
ISSN: 0040-1951

hal-01171761
https://hal.archives-ouvertes.fr/hal-01171761
DOI : 10.1016/j.tecto.2014.11.012

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Interleukin-33 (IL-33), a cytokine belonging to the IL-1 family, is crucially involved in inflammatory pathologies including liver injury and linked to various modes of cell death. However, a link between IL-33 and necroptosis or programmed necrosis in liver pathology remains elusive. We aimed to investigate the regulation of IL-33 during necroptosis-associated liver injury. The possible regulation of IL-33 during liver injury by receptor-interacting protein kinase 1 (RIPK1) and poly(ADP-ribose) polymerase 1 (PARP-1) was investigated in mice in vivo and in hepatic stellate cells in vitro. The liver immunohistopathology, flow cytometry, serum transaminase measurement, ELISA, and qPCR-based cytokine measurement were carried out. By using a chemical approach, we showed that pretreatment of mice with Necrostatin-1 (Nec-1) (inhibitor of RIPK1) and/or PJ34 (inhibitor of PARP-1) significantly protected mice against concanavalin A (ConA) liver injury (aspartate amino-transferase (AST)/alanine amino-transferase (ALT)) associated with down-regulated hepatocyte-specific IL-33 expression. In contrast, the expression level of most systemic cytokines (except for IL-6) or activation of liver immune cells was not altered by chemical inhibitors rather an increased infiltration of neutrophils in the liver. During polyinosine-polycytidylic acid (Poly(I:C))-induced acute hepatitis, liver injury and hepatocyte-specific IL-33 expression was also inhibited by PJ34 without any protective effect of PJ34 in CCl4-induced liver injury. Moreover, PJ34 down-regulated the protein expression of IL-33 in activated hepatic stellate cells by cocktail of cytokines or staurosporine in vitro. In conclusion, we evidenced that the Nec-1/PJ34 is a potent inhibitor of liver injury and Nec-1/PJ34 down-regulated hepatocyte-specific IL-33 expression in the liver in vivo or in hepatic stellate cells in vitro, suggesting IL-33 as a possible readout of necroptosis-involved liver pathologies. Necroptosis inhibitors can protect mice against liver injury induced by ConA or Poly(I:C). IL-33 expression in liver injury in vivo is inhibited by PJ34. IL-33 expression in hepatic stellate cells in vitro is inhibited by PJ34. Hepatocyte-specific IL-33 expression is down-regulated by Nec-1/PJ34 during hepatitis. IL-33 is a new marker of necroptosis-associated liver injuries.
ISSN: 0946-2716

hal-01134319
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134319
DOI : 10.1007/s00109-015-1270-6
PUBMED : 25747661

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
New petrographic and microstructural observations, mineral equilibria modelling and U/Pb (monazite) geochronological studies were carried out to investigate the relationships between deformation and metamorphism across the Rehamna massif (Moroccan Variscan belt). In this area, typical Barrovian (muscovite to staurolite) zones developed in Cambrian to Carboniferous metasedimentary rocks that are distributed around a dome-like structure. First assemblages are characterized by the presence of locally preserved andalusite, followed by prograde evolution culminating at 6 kbar and 620 °C in the structurally deepest staurolite zone rocks. This Barrovian sequence was subsequently uplifted to supracrustal levels, heterogeneously reworked at greenschist facies conditions, which was followed locally by static growth of andalusite, indicating heating to 2.5–4 kbar and 530–570 °C. The 206Pb/238U monazite age of 298.3 ± 4.1 Ma is interpreted as minimum age of peak metamorphic conditions, whereas the ages of 275.8 ± 1.7 Ma and 277.0 ± 1.1 Ma date decompression and heating at low pressure, in agreement with previous dating of Permian granitoids intruding the Rehamna massif. The prograde metamorphism occurred during thickening and associated horizontal flow in the deeper crust (S1 horizontal schistosity). The horizontally disposed metamorphic zones were subsequently uplifted by a regional scale antiform during ongoing N–S compression. The re-heating of the massif follows late massive E–W shortening, refolding and retrograde shearing of all previous fabrics coevally with regionally important intrusions of Permian granitoids. We argue that metamorphic evolution of the Rehamna massif occurred several hundred kilometres from the convergent plate boundaries in the interior of continental Gondwanan plate. The tectonometamorphic history of the Rehamna massif is put into Palaeozoic plate tectonic perspective and Late Carboniferous reactivation of (Devonian)–Early Carboniferous basins formed during stretching of the north Gondwana margin and formation of the Palaeotethys Ocean. The inherited heat budget of these magma-rich basins plays a role in the preferential location of this intracontinental orogen. It is shown that rapid transition from lithospheric stretching to compression is characterized by specific HT type of Barrovian metamorphism, which markedly differs from similar Barrovian sequences along Palaeozoic plate boundaries reported from Variscan Europe.
ISSN: 0263-4929

hal-01468009
https://hal.archives-ouvertes.fr/hal-01468009
DOI : 10.1111/jmg.12214

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Deformation of the continental lithosphere is traditionally modeled assuming that heat production in the subcontinental lithospheric mantle is negligible. Although this may be appropriate for highly depleted Archean lithosphere, studies of mantle xenoliths and lithospheric-derived mafic rocks suggest that heat productions of up to 0.4 ;μW/m3 may be attained in the mantle of Phanerozoic and Neoproterozoic regions due to modal metasomatism. To investigate the effect of a local enrichment in heat-producing elements within the lithospheric mantle on the continental deformation, we performed a series of 2D thermo-mechanical models simulating the deformation of a lithospheric plate 1000 km long, which contains in its central part a 200 km wide and 20 km-thick mantle layer with a heat production of 0.05;–0.25 ;μW/m3 between 40 and 80 km depth, leading to a local enhancement of the surface heat flow by 1;–5 mW/m2. Compression models show that a 20 km-thick layer with a heat production as low as 0.05 ;μW/m3 within the shallow lithospheric mantle leads to strain localization in both the enriched mantle and the overlying crust. Strain localization depends exponentially on the temperature increase in the lithosphere section, which is controlled by the volume of metasomatized mantle and the intensity of the metasomatic enrichment in heat-producing elements. A heat production of 0.25 μW/m3 between 60 and 80 km depth results, for instance, in strains within and above the metasomatized mantle 5 times higher than in the surrounding lithosphere. Strain localization also depends on the location of the heat-producing domain and on the plate rheological structure; deeper heat-producing domains and weaker plates leading to stronger localization. These results provide an explanation for strain localization in intraplate environments, leading to the formation of orogenic belts situated hundreds to thousands of kilometers away from known plate boundaries, as observed in the Neoproterozoic belts of Gondwana and in the present-day deformation of the Asian plate.
ISSN: 0012-821X

hal-00411386
https://hal.archives-ouvertes.fr/hal-00411386
DOI : 10.1016/j.epsl.2008.07.040

Éditeur(s) : Springer
Résumé : Based on new multibeam bathymetric data, seismic-reflection profiles and side-scan sonar images, a great number of submarine failures of various types and sizes was identified along the northern margin of the Ligurian Basin and characterized with 3 distinct end-members concerning their location on the margin, sedimentary processes and possible triggering mechanisms. They include superficial landslides mainly located in the vicinity of the main mountain-supplied rivers and on the inner walls of canyons (typically smaller that 10(8) m(3) in volume: Type 1), deep scars 100-500 m high along the base of the continental slope (Type 2), and large-scale scars and Mass Transport Deposits (MTDs) affecting the upper part of the slope (Type 3 failures). The MTDs are located in different environmental contexts of the margin, including the deep Var Sedimentary Ridge (VSR) and the upper part of the continental slope in the Gulf of Genova (Finale Slide and Portofino Slide), with volumes of missing sediment reaching up to 1.5 x 10(9) m(3). High sedimentation rates related to hyperpycnal flows, faults and earthquake activity, together with sea-level fluctuations are the main factors invoked to explain the distribution and sizes of these different failure types.
Marine Geophysical Research (0025-3235) (Springer), 2011-03 , Vol. 32 , N. 1-2 , P. 225-243

Droits : Springer Science+Business Media B.V. 2011
http://archimer.ifremer.fr/doc/00043/15387/14028.pdf
DOI:10.1007/s11001-011-9123-3
http://archimer.ifremer.fr/doc/00043/15387/

Éditeur(s) : Elsevier Science Bv
Résumé : The Danube River Basin–Black Sea area represents a unique natural laboratory for studying the interplay between lithosphere and surface as well as source to sink relationships and their impact on global change. This paper addresses some information on the “active sink” of the system; i.e. the Danube deep sea fan and the Black Sea basin. The present study focuses on the distal sedimentary processes and the evolution of sedimentation since the Last Glacial Maximum. This is investigated through recently acquired long piston coring and shallow seismic data recovered at the boundary of influence of the distal part of the Danube turbidite system (to the north-west) and the Turkish margin (to the south). This dataset provides a good record of the recent changes in the sedimentary supply and climato-eustasy in the Black Sea region during the last 25 ka. This study demonstrates that the deep basin deposits bear the record of the Late Quaternary paleoenvironmental changes and that the western Black Sea constitutes an asymmetric subsident basin bordered by a northern passive margin with confined, mid-size, mud-rich turbidite systems mainly controlled by sea-level, and a southern turbidite ramp margin, tectonically active. Highlights ► Oceanographic results from survey carried out in the western Black Sea are presented. ► The Danube fan distal part: the Black Sea main depositional feature is described. ► This study is on the morphology and gravity sedimentation in the Black Sea deep basin. ► Data were collected at the boundary between the Danube fan and the Turkish margin. ► The dataset provide a good record of sedimentary supply and climato-eustatic changes.
Global And Planetary Change (0921-8181) (Elsevier Science Bv), 2013-04 , Vol. 103 , P. 232-247

Droits : 2012 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00095/20637/18272.pdf
DOI:10.1016/j.gloplacha.2012.05.002
http://archimer.ifremer.fr/doc/00095/20637/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ISSN: 0377-0427

hal-00530820
https://hal.archives-ouvertes.fr/hal-00530820
DOI : 10.1016/j.cam.2008.08.014

Éditeur(s) : HAL CCSD
Résumé : The mantle deformation processes that control the thinning and break-up of continental lithosphere remain poorly understood. Our knowledge is restricted to either lithospheric scale thermo-mechanical models --that use experimentally derived flow laws--, geophysical imaging and/or rare xenoliths from active continental rifts, such as the East African Rift System. The originality of this work relies on the study of the two largest outcrops of diamond facies subcontinental lithospheric mantle in the world: the Beni Bousera and Ronda peridotite massifs in N Morocco and S Spain, respectively. The structures and petrologic and metamorphic zoning preserved in these massifs --implying a polybaric and polythermal evolution-- provides a unique opportunity to investigate the thermo-mechanical evolution of thick subcontinental lithospheric mantle in extensional settings. In this thesis we studied the deformation mechanisms in both peridotites and pyroxenites to constrain the modes of exhumation of subcontinental lithospheric mantle from garnet-, to spinel-, and finally, to plagioclase lherzolite facies conditions. We combined field mapping of tectonometamorphic domains and structural mapping of ductile structures, microstructural analysis, crystal preferred orientations (CPO) measurements and conventional thermobarometric calculations and thermodynamic modeling (Perple_X) to unravel the pressure and temperature conditions of deformation. We showed that exhumation from garnet- to spinel lherzolite facies conditions was accommodated by fast shearing --in thermal disequilibrium--along a lithospheric scale transtensional shear zone. In this context, the petrological zoning and the large temperature gradient (ca. 100ºC/km) preserved in the Beni Bousera massif represent the mechanical juxtaposition of progressively deeper and hotter lithospheric levels at depths of ca. 60 km in the latest Oligocene (ca. 25 Ma). Final exhumation from spinel- to plagioclase facies lherzolite and emplacement into the crust is best recorded in the Ronda massif where it occurred by inversion and lithospheric scale folding of the highly attenuated continental lithosphere in a back-arc region, probably in relation with southward slab rollback and subsequent collision with the palaeo-Maghrebien passive margin in the early Miocene (21-23 Ma).
Les processus de déformation contrôlant l'amincissement de la lithosphère continentale sont encore mal contraints. Nos connaissances sont principalement basées sur la modélisation thermomécanique d'extension à l'échelle de la lithosphère--utilisant des lois rhéologiques derivées expérimentalement, l'imagerie géophysique et l'analyse de xénolithes provenant de rift continentaux actifs à ce jour, tels que le Rift Est-Africain. L'originalité de ce travail reside dans l'étude des deux plus grands massifs de péridotites sous-continentales ayant enregistrées des conditions primaires du facies à diamant: les massifs de Beni Bousera au nord du Maroc et de Ronda au sud de l'Espagne, respectivement. Les structures et la zonation petrologique et métamorphique --impliquant une évolution polybarique et polythermique-- préservéees dans ces massifs offrent une opportunité unique pour étudier l'évolution thermo-mécanique du manteau sous-continental dans un contexte extensif. Dans ce travail, nous avons étudié les mécanismes de déformation des péridotites et des pyroxénites afin de contraindre les modes d'exhumation du manteau lithosphérique sous-continental, depuis des conditions du facies des lherzolites à grenat, jusqu'au facies à spinelle et enfin à plagioclase. Nous avons combiné la cartographie des faciès tectono-métamorphiques et des structures ductiles de déformation, l'analyse des microstructures, la mesure d'orientations préférentielles de réseau (OPR), et la géothermobarométrie conventionelle couplée à la modélisation thermodynamique (PerpleX) afin de contraindre les conditions de pression et température de la déformation. Nous avons montré que l'exhumation précoce du facies à grenat au facies à spinelle était accomodée par une faille transtensive affectant le manteau lithosphérique. Dans ce contexte, la zonation tectono-métamorphique et le gradient thermique important (ca. 100ºC/km) préservés à Beni Bousera résultent de la juxtaposition mécanique de domaines lithosphériques initialement équilibrés à différentes pressions et températures, fossilisée à une profondeur de ca. 60 km durant l'Oligocène supérieur (ca. 25 Ma). L'exhumation finale du facies de lherzolite à spinelle au facies à plagioclase et l'emplacement final dans la croûte, mieux enregistrés dans Ronda, se sont produits par inversion et plissement de la section lithosphérique fortement amincie dans un contexte arrière-arc, probablement lors du retrait vers le sud de la lithosphère subduite et la collision de l'arc avec les paléo-marges maghrébines au Miocène inférieur (21-23 Ma).
https://tel.archives-ouvertes.fr/tel-00767700

tel-00767700
https://tel.archives-ouvertes.fr/tel-00767700
https://tel.archives-ouvertes.fr/tel-00767700/document
https://tel.archives-ouvertes.fr/tel-00767700/file/THESE_Frets.pdf

Résumé : La zone latérale des filaments branchiaux des bivalves Codakia orbiculata et Lucina pensylvanica est le lieu d'une symbiose chimioautotrophe avec des bactéries sulfo-oxydantes hébergées dans des cellules spécialisées, appelées bactériocytes. Dans cette étude, nous nous sommes proposés de déterminer les mécanismes qui sous-tendent la plasticité cellulaire et tissulaire observée au cours des processus de décolonisation et de recolonisation bactérienne. Pour ce faire, des individus collectés dans leur milieu naturel, ont été maintenus au laboratoire dans des bacs d'eau de mer filtrée en absence de nourriture et de soufre réduit, afin de provoquer la décolonisation bactérienne des filaments branchiaux. Lorsque la branchie apparaissait purgée de ses symbiotes, les individus ont été remis dans leur habitat naturel afin de provoquer sa recolonisation. L'analyse des branchies au cours de ces processus a fait appel à des techniques variées (histologie, immunohistochimie, hybridation in situ, cytométrie en flux, dosage des protéines et spectrométrie de fluorescence X). Les résultats obtenus ont permis de montrer que l'acquisition environnementale mise en évidence chez les juvéniles des Codakia se poursuivait tout au long de la vie des adultes. Cette étude a également permis une meilleure compréhension des mécanismes tissulaires sous-jacents à la plasticité du filament branchial en mettant en évidence les processus d'apoptose et de prolifération cellulaire qui ont lieu au cours des processus de décolonisation et de recolonisation. Ces processus s'accompagnent d'une variation de la teneur en soufre élémentaire, ainsi que de la taille relative et du contenu génomique des symbiotes
The lateral zone of gills filaments of coastal bivalves Codakia orbiculata and Lucina pensylvanica is the site of chemoautotrophic symbiosis with sulfur-oxidizing bacteria, housed in specialized cells called bacteriocytes. The objective of this thesis is to determine the mechanisms underlying cel1 plasticity and tissue plasticity observed in the lateral zone of gills filaments during the processes of bacterial decolonization and recolonization. In order to do this, the individuals collected in their natural habitat were maintained at the laboratory in seawater filtered tanks, without food and reduced sulfur, to cause bacterial decolonization. When the gills seemed to be purged, the individuals were returned to their natural habitat in order to cause the bacterial recolonization of gills filaments. The analysis of the gills during these processes involves several techniques (histology, immunohistochemistry, molecular hybridization, flow cytometry, total protein assays, protein sulfur assays, X-ray fluorescence spectrometry).This study shows that symbiont acquisition can occur during the entire life of Codakia bivalves. It also allows a better understanding of gills filaments plasticity by highlighting apoptosis and cell proliferation during decolonization and recolonization processes.Theses processes are accompanied with of elemental sufur, relative size and genomic content of symbiontes.

http://www.theses.fr/2011AGUY0461/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Genetics and molecular biology have been instrumental for a better understanding of heritable defects causing human infertility over the past decades. More recently, the field of reproductive biology has harnessed genome biological approaches to gain insight into molecular processes underlying normal and pathological gametogenesis and gamete function. We are currently witnessing yet another quantum leap in our ability to monitor the flow of information from the genome via the transcriptome to the proteome: tiling arrays that cover both strands of a given target genome and RNA-Seq, a method based on ultra-high throughput DNA sequencing, enable us to study noncoding and protein-coding transcripts with unprecedented precision and depth at a reasonable cost. These technologies have spawned a thriving discipline within the bioinformatics field that employs information technology for managing and interpreting biological high-throughput data. This review outlines database projects and online analysis tools useful for life scientists in general and discusses in detail selected projects that have specifically been developed for researchers and clinicians in the field of reproductive biology. This article is part of a Special Issue entitled: Molecular Genetics of Human Reproductive Failure.
ISSN: 0006-3002

hal-00877444
https://hal.archives-ouvertes.fr/hal-00877444
DOI : 10.1016/j.bbadis.2012.05.018
PUBMED : 22687534

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Seismic anisotropy originating within the continental crust is used to determine kinematic flow lines within active mountain belts and is widely attributed to regionally aligned mica. However, naturally deformed micaceous rocks commonly show composite (e.g. S-C) fabrics. It is necessary therefore to understand how both varying mica content and differing intensities of multiple foliations impact on seismic interpretations in terms of deformation fields. An outcrop analogue for granitic mid-crustal deformed zones is used here to calibrate the seismic response against both parameters. Seismic responses are modelled using crystallographic preferred orientations for polymineralic, micaceous granitic gneisses, measured using Electron Back-Scatter Diffraction. The sample results are generalised by modelling the effects of variations in modal composition and the relative importance of deformation fabrics of variable orientation, so-called rock and fabric recipes. The maximum P- and S-anisotropy are calculated at 16.6% and 23.9% for single-foliation gneisses but for mixed (i.e. S-C) foliation gneisses these values reduce to 5.8% and 7.5% respectively. Furthermore, mixtures of multiple foliations generate significant variations in the geometry of the seismic anisotropy. This effect, coupled with the geographical orientation of fabrics in nature. can generate substantial variations in the orientation and magnitude of seismic anisotropy (especially for shear waves) as measured for the continental crust using existing receiver function and teleseismic near-vertical incidence methods. Thus, maps of seismic anisotropy varying with depth in deforming continents need not imply necessarily depth-varying deformation kinematics and tectonic decoupling.
ISSN: 0012-821X

hal-00445247
https://hal.archives-ouvertes.fr/hal-00445247
DOI : 10.1016/j.epsl.2009.09.035

Éditeur(s) : American Geophysical Union
Résumé : The origins and fates of the Atlantic salinity maximum water (SMW), formed through excess evaporation in the tropics and subtropics of both hemispheres, are studied using monthly mean outputs of a numerical simulation of the world ocean climatological circulation. After defining formation domains from the surface salinity field and the vertical stratification, a Lagrangian technique is used to estimate the formation rates and main pathways in each hemisphere and the role of this water in the framework of the warm water return flow of the meridional overturning cell. Formation rates around 9 and 11 Sv are found in the Southern and Northern Hemispheres, respectively. While the export of the southern SMW from its formation area is realized by the western boundary currents, that of the northern SMW mainly results from interior subduction. Equatorward of the formation regions, a fraction of each SMW variety is entrained in the subtropical cells that connect the subtropics to the equatorial region. Poleward of them, both varieties are seen to feed the regions of subtropical mode water (STMW) formation around 35degrees of latitude in both hemispheres. The bulk of the transport associated with each variety eventually turns northward: This amounts to similar to6 Sv of southern SMW gathered in the North Brazil Undercurrent (NBUC), and similar to10 Sv of northern SMW found in the Gulf Stream at 35degreesN, of which 8 Sv have gone through the Caribbean Sea. Of the 13.4-Sv northward transport of the meridional overturning cell estimated by the model at 47degreesN, more than 50% (6.9 Sv) is found to have transited through at least one of the SMW regions. This gives an indication of the likely important role of SMW formation in the observed northward salinity increase of the upper Atlantic Ocean.
Journal of Geophysical Union - Research C - Oceans (0148-0227) (American Geophysical Union), 2002-09 , Vol. 107 , N. C10 , P. NIL_610-NIL_624

Droits : 2002 by the American Geophysical Union
http://archimer.ifremer.fr/doc/2002/publication-769.pdf
DOI:10.1029/2002JC001318
http://archimer.ifremer.fr/doc/00000/769/

Éditeur(s) : Elsevier
Résumé : The main feature of the Congo-Angola margin in the Gulf of Guinea is the Congo (ex-Zaire) deep-sea fan composed of a submarine canyon directly connected to the Congo River, a channel and a [sediment] lobe area. During the multi-disciplinary programme called BIOZAIRE conducted by Ifremer from 2000 to 2005, two CTD-O2 sections with discrete water column samples were performed (BIOZAIRE3 cruise: 2003-2004) to study the influence of the Congo River discharges, both in the surface layer and in the deep and near-bottom layers. The surface layer water is greatly diluted with river water that has a heavy particle load. The deep layer is affected by episodic turbidity currents that flow in the deep Congo channel and reach deep areas far from the coast. Previous studies revealed deep anomalies in oxygen (deficit) and nutrient (excess) concentrations at not, vert, similar4000 m depth and assumed that they resulted from mineralisation of the particulate organic matter from the Congo River. The BIOZAIRE3 sections were designed to explore these phenomena in more detail near the Congo channel. Oxygen and nutrients were measured as well as additional parameters, including stable isotopes of oxygen and carbon, dissolved inorganic carbon and pH. For the surface layer, the effect of the Congo River was studied with reference to salinity. Deviations from the theoretical dilution of various inorganic solutes suggested the occurrence of mineralisation and consumption processes. For the deep layer, the network of CTD-O2 stations gave a more detailed description of the deep anomalies than in previous studies. From the east-west section, anomalies appeared on the bottom at 4000 m depth and became slightly shallower when they spread to the west. They were also present north and south on the bottom along the 4000 m isobath. In these deep waters, the decrease in the o13C values of dissolved inorganic carbon confirmed that the mineralisation of organic matter plays a role in generating these anomalies. The location of the origin of this deep anomaly is debated. Here, arguments are given in favour of mineralisation of the particulate organic matter input that overflows from the Congo channel at not, vert, similar4000 m depth during turbidity current events. Other authors suggest that this input comes from downslope particle transport. Anomalies of the same origin, but weaker, also occurred deeper on the Congo lobe, where the Congo channel ends, but with a significant pH decrease on the bottom which was not seen at 4000 m depth.
Deep Sea Research Part II: Topical Studies in Oceanography (0967-0645) (Elsevier), 2009-11 , Vol. 56 , N. 23 , P. 2183-2196

Droits : 2009 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6737.pdf
DOI:10.1016/j.dsr2.2009.04.002
http://archimer.ifremer.fr/doc/00000/6737/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Orogenic wedges locally present chaotic tectonostratigraphic units that contain exotic blocks of various size, origin, age and lithology, embedded in a sedimentary matrix. The occurrence of ophiolitic blocks, sometimes huge, in such “mélanges” raises questions on (i) the mechanisms responsible for the incorporation of oceanic basement rocks into an accretionary wedge and (ii) the mechanisms allowing exhumation and redeposition of these exotic elements in “mélanges” during wedge growth.To address these questions, we present the results of a series of analogue experiments performed to characterize the processes and parameters responsible for accretion, exhumation and tectonosedimentary reworking of oceanic basement lithospheric fragments in an accretionary wedge.The experimental setup is designed to simulate the interaction between tectonics, erosion and sedimentation. Different configurations are applied to study the impact of various parameters, such as irregular oceanic floor due to structural inheritance, or the presence of layers with contrasted rheology that can affect deformation partitioning in the wedge (frontal accretion vs basal accretion) influencing its growth. Image correlation technique allows extracting instantaneous velocity field, and tracking of passive particles. By retrieving the particle paths determined from models, the pressure-temperature path of mélange units or elementary blocks can be discussed. The experimental results are then compared with observations from ophiolite-bearing mélanges in Taiwan (Lichi and Kenting mélanges) and Raman spectroscopy of carbonaceous material (RSCM) Thermometry data on rocks from the northern Apennines (Casanova mélange). A geological scenario is proposed following basic observations. The tectonic evolution of the retroside of doubly vergent accretionary wedges is mainly controlled by backthrusting and backfolding. The retro wedge is characterized by steep slopes that are prone to gravitational instabilities. It triggers submarine landslides inducing huge mass transfers. This erosion combined with backthrusting could favour exhumation of the ophiolitic fragments formerly accreted at the base of the wedge along the rough seafloor-sediments interface. Such an exhumed material can be reworked and deposited as debris- flows in proximal basins located at the foot of the retrowedge slope forming a tectono-sedimentary mélange. These syntectonic basins are continuously deformed and involved in prograding backthrusting-induced deformation.
ISSN: 0264-3707

hal-01395127
https://hal.archives-ouvertes.fr/hal-01395127
DOI : 10.1016/j.jog.2016.05.008

Éditeur(s) : Elsevier
Résumé : The French Guiana transform margin and Demerara abyssal plain have been recently surveyed in the framework of the EXTRAPLAC French Program of extension of the continental shelf (Guyaplac survey, Ifremer-IFP-SHOM-IPEV). Based on the interpretation of some of the data collected during the Guyaplac survey (Simrad-EM12 multibeam bathymetric data, backscatter imagery, and 3.5 kHz profiles), the area can be divided into three morphostructural domains. (1) The western Guiana margin, including a part of the Demerara plateau, an important bathymetric relief prolonging the continental platform off Guiana and Surinam. This domain is bounded by (1a) the NWSE trending northern border of the Demerara plateau which appears quite steep and corresponds to a transform segment of the margin, (1b) the N-S eastern border of the Demerara plateau which corresponds to a divergent segment of the margin. The Demerara plateau shows a segmented morphology, low slope gradients, and a very rough surface (ripples perpendicular to the slope direction). NNW-SSE structural steps seem to correspond to collapses of 100 km long blocs towards the east. Slumps initiate along these directions. The observed rough bathymetry seems to be related to creeping processes. At a greater scale (seismic data), this part of the margin has been totally destabilized (numerous imbricate transparent masses rooted at about 0.5 s.t.w.t.t. below seafloor). The NW-SE trending northern border of the Demerara plateau corresponds to a cliff-like continental slope, probably slightly smoother than other transform margins (Ghana/cote d'Ivoire margin). The N-S eastern border of Demerara plateau is characterized by numerous small-scale imbricate slumps. Some of these failures seem to be emplaced in the prolongation of the NNW-SSE structural steps identified on the Demerara plateau. (2) The eastern Guiana margin corresponds to a NW-SE oriented gullied transform margin segment. The associated continental slope is very steep and characterized by numerous imbricate slumps and related debris flows. Some undulated masses, probably corresponding to creeping sediments or to older mass-wasting events are still imprinted on bathymetry. This transform margin segment is nearly entirely destabilized and eroded. (3) The Demerara abyssal plain. This domain is characterized eastwards by channels belonging to the Amazon turbidite system and westwards, at the foot of Demerara continental slope, by sediment waves probably created by contour currents. To conclude, it seems that there is a strong relationship between the structure (transform and divergent segments) and the emplacement of recurrent slope instabilities. These are probably related to the steepness of the slopes but also to subsidence histories generating in some cases huge deep-seated collapses of the whole margin. Fluid ascents are common everywhere in the area, probably enhancing slope instability. Their origin is not constrained but the black shales or Cretaceous organic-rich layers could be good candidates.
Marine and Petroleum Geology (0264-8172) (Elsevier), 2009-05 , Vol. 26 , N. 5 , P. 711-723

Droits : 2008 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6856.pdf
DOI:10.1016/j.marpetgeo.2008.02.010
http://archimer.ifremer.fr/doc/00000/6856/

Éditeur(s) : Natl Acad Sciences
Résumé : The marine realm represents 70% of the surface of the biosphere and contains a rich variety of organisms, including more than 34 of the 36 living phyla, some of which are only found in the oceans. The number of marine species used by humans is growing at unprecedented rates, including the rapid domestication of marine species for aquaculture and the discovery of natural products and genes of medical and biotechnological interest in marine biota. The rapid growth in the human appropriation of marine genetic resources (MGRs), with over 18,000 natural products and 4,900 patents associated with genes of marine organisms, with the latter growing at 12% per year, demonstrates that the use of MGRs is no longer a vision but a growing source of biotechnological and business opportunities. The diversification of the use of marine living resources by humans calls for an urgent revision of the goals and policies of marine protected areas, to include the protection of MGRs and address emerging issues like biopiracy or benefit sharing. Specific challenges are the protection of these valuable resources in international waters, where no universally accepted legal framework exists to protect and regulate the exploitation of MGRs, and the unresolved issues on patenting components of marine life. Implementing steps toward the protection of MGRs is essential to ensure their sustainable use and to support the flow of future findings of medical and biotechnological interest.
Proceedings Of The National Academy Of Sciences Of The United States Of America (0027-8424) (Natl Acad Sciences), 2010-10 , Vol. 107 , N. 43 , P. 18318-18324

Droits : 2010 by the National Academy of Sciences
http://archimer.ifremer.fr/doc/00018/12897/9935.pdf
DOI:10.1073/pnas.0911897107
http://archimer.ifremer.fr/doc/00018/12897/

Éditeur(s) : HAL CCSD
Résumé : Structure elucidation of unknown compounds has been the task of natural products chemists for a long time and their approach seems to be the most efficient when it comes to identification. Very recently, Kokkotou et al. proposed a work-flow based on an integrative approach for new metabolite identification. This approach, including prediction of 2D NMR HSQC spectra, demonstrated the necessity for implementation of new algorithms leading to the prediction of 2D NMR spectra. Herein we present a method based on both quantum mechanics (QM) and Hierarchical Organisation of Spherical Environments (HOSE) of the prediction 2D NMR spectra.
https://hal.archives-ouvertes.fr/hal-01416667

hal-01416667
https://hal.archives-ouvertes.fr/hal-01416667
https://hal.archives-ouvertes.fr/hal-01416667/document
https://hal.archives-ouvertes.fr/hal-01416667/file/MRC_v1.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé : The evolutionary potential of long-lived species, such as forest trees, is fundamental for their local persistence under climate change (CC). Genome–environment association (GEA) analyses reveal if species in heterogeneous environments at the regional scale are under differential selection resulting in populations with potential preadaptation to CC within this area. In 79 natural [i]Fagus sylvatica[/i] populations, neutral genetic patterns were characterized using 12 simple sequence repeat (SSR) markers, and genomic variation (144 single nucleotide polymorphisms (SNPs) out of 52 candidate genes) was related to 87 environmental predictors in the latent factor mixed model, logistic regressions and isolation by distance/environmental (IBD/IBE) tests. SSR diversity revealed relatedness at up to 150m intertree distance but an absence of large-scale spatial genetic structure and IBE. In the GEA analyses, 16 SNPs in 10 genes responded to one or several environmental predictors and IBE, corrected for IBD, was confirmed. The GEA often reflected the proposed gene functions, including indications for adaptation to water availability and temperature. Genomic divergence and the lack of large-scale neutral genetic patterns suggest that gene flow allows the spread of advantageous alleles in adaptive genes. Thereby, adaptation processes are likely to take place in species occurring in heterogeneous environments, which might reduce their regional extinction risk under CC
ISSN: 0028-646X

hal-01309135
https://hal.archives-ouvertes.fr/hal-01309135
PRODINRA : 343710
DOI : 10.1111/nph.13809

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
Coral reef fisheries support the development of local and national economies and are the basis of important cultural practices and worldviews. Transitioning economies, human development, and environmental stress can harm this livelihood. Here we focus on a transitioning social-ecological system as a case study (Moorea, French Polynesia). We review fishing practices and three decades of effort and landing estimates with the broader goal of informing management. Fishery activities in Moorea are quite challenging to quantify because of the diversity of gears used, the lack of centralized access points or markets, the high participation rates of the population in the fishery, and the overlapping cultural and economic motivations to catch fish. Compounding this challenging diversity, we lack a basic understanding of the complex interplay between the cultural, subsistence, and commercial use of Moorea's reefs. In Moorea, we found an order of magnitude gap between estimates of fishery yield produced by catch monitoring methods (2 t km −2 ∼ year −1) and estimates produced using consumption or participatory socioeconomic consumer surveys (∼24 t km −2 year −1). Several lines of evidence suggest reef resources may be overexploited and stakeholders have a diversity of opinions as to whether trends in the stocks are a cause for concern. The reefs, however, remain ecologically resilient. The relative health of the reef is striking given the socioeconomic context. Moorea has a relatively high population density, a modern economic system linked into global flows of trade and travel, and the fishery has little remaining traditional or customary management. Other islands in the Pacific in similar contexts in Polynesia such as Hawaii, that continue to develop economically, may have small-scale fisheries that increasingly resemble Moorea. Therefore, understanding Moorea's reef fisheries may provide insight into their future.
ISSN: 2296-7745

Droits : http://creativecommons.org/licenses/by/
hal-01325804
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804/file/fmars-03-00070.pdf
DOI : 10.3389/fmars.2016.00070