Éditeur(s) : Paris : Presses universitaires de France

Droits : Domaine public
Provenance : Université de Nantes. Service commun de la documentation
Permalien : http://www.manioc.org/patrimon/NAN13058
NAN13058

Éditeur(s) : Paris : Imprimerie royale
Extrait de : Précis de l'abolition de l'esclavage dans les colonies anglaises
Siècle(s) traité(s) : 19
Provenance : Ville de Bordeaux. Bibliothèque municipale
Permalien : http://www.manioc.org/patrimon/BBX19046
BBX19046

Éditeur(s) : HAL CCSD Lambert Academic Publishing
Résumé : The Himalaya-Tibet system is considered as the classical case of continental collision. Nonetheless, some fundamental questions concerning its structure, as well as physical processes influencing its evolution are still pending. This book presents several advances in the subject matter. Based on new high-resolution geophysical data from the field, combined with robust imaging techniques, the structure of the collision is revealed in detail: the underplating of India beneath half of Tibet, as well as the geometry of the surface along which this happens. Various numerical modelling techniques allow to discuss physical processes at work in the collision zone, such as the rheology of the India plate whose strong mantle supports the Himalayas, or the metamorphic reactions at depth emphasizing the role of water. We recommend this book to Earth Scientists in a broader sense. While specialists in seismology or modelling can thumb technical details, all Readers can get an interdisciplinary overview of mountain building in the Himalayas, with a retrospective outlook on early day explorers and the dawn of some classical geological principles.
https://hal.archives-ouvertes.fr/hal-00854592

ISBN : 978-3838323534
hal-00854592
https://hal.archives-ouvertes.fr/hal-00854592

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The non-classical human leukocyte antigen-G, HLA-G, plays an important role in inducing tolerance, through its immunosuppressive effects on all types of immune cells. Immune tolerance is a key issue in the liver, both in liver homeostasis and in the response to liver injury or cancer. It would therefore appear likely that HLA-G plays an important role in liver diseases. Indeed, this molecule was recently shown to be produced by mast cells in the livers of patients infected with hepatitis C virus (HCV). Furthermore, the number of HLA-G-positive mast cells was significantly associated with fibrosis progression. The generation of immune tolerance is a role common to both HLA-G, as a molecule, and the liver, as an organ. This review provides a summary of the evidence implicating HLA-G in liver diseases. In the normal liver, HLA-G transcripts can be detected, but there is no HLA-G protein. However, HLA-G protein is detectable in the liver tissues and/or plasma of patients suffering from hepatocellular carcinoma, hepatitis B or C, or visceral leishmaniasis and in liver transplant recipients. The cells responsible for producing HLA-G differ between diseases. HLA-G expression is probably induced by microenvironmental factors, such as cytokines. The expression of HLA-G receptors, such as ILT2, ILT4, and KIRD2L4, on liver cells has yet to be investigated, but these receptors have been detected on all types of immune cells, and such cells are present in liver. The tolerogenic properties of HLA-G explain its deleterious effects in cancers and its beneficial effects in transplantation. Given the key role of HLA-G in immune tolerance, new therapeutic agents targeting HLA-G could be tested for the treatment of these diseases in the future.
ISSN: 0168-8278

hal-01134468
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134468
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134468/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134468/file/Biology%20of%20the%20immunomodulatory%20molecule%20HLA-G.pdf
DOI : 10.1016/j.jhep.2015.03.007

Éditeur(s) : HAL CCSD American Society of Mechanical Engineers
Résumé : International audience
The isothermal flow in a model channel of plate-fin heat exchanger with periodically arranged embossed-like vortex generators is investigated. Velocity measurements are performed by LDA in the transitional regime (Reynolds number from 1000 up to 5000). Strong longitudinal vortices are observed downstream of each generator. The vortex roll-up process is highlighted by the evolution of the velocity vector field in the cross section of the flow. The modifications of the vortex characteristics after successively encountered generators are investigated. This work shows most of the flow features which are known to produce heat transfer enhancement, and shows that these smooth shaped vortex generators are very promising for enhanced heat exchangers.
ISSN: 0098-2202

hal-01582938
https://hal.archives-ouvertes.fr/hal-01582938
https://hal.archives-ouvertes.fr/hal-01582938/document
https://hal.archives-ouvertes.fr/hal-01582938/file/Dupont_heat_exchanger_JFE2002_preprint.pdf
DOI : 10.1115/1.1595675

Éditeur(s) : HAL CCSD
Résumé : In this paper we introduce k-laminar graphs a new class of graphs which extends the idea of Asteroidal triple free graphs. Indeed a graph is k-laminar if it admits a diametral path that is k-dominating. This bio-inspired class of graphs was motivated by a biological application dealing with sequence similarity networks of reads (called hereafter read networks for short). We briefly develop the context of the biological application in which this graph class appeared and then we consider the relationships of this new graph class among known graph classes and then we study its recognition problem. For the recognition of k-laminar graphs, we develop polynomial algorithms when k is fixed. For k=1, our algorithm improves a Deogun and Krastch's algorithm (1999). We finish by an NP-completeness result when k is unbounded.
https://hal.inria.fr/hal-01282715

hal-01282715
https://hal.inria.fr/hal-01282715
ARXIV : 1603.01179

Éditeur(s) : Paris : Gallimard
Extrait de : Carnet de voyage
Résumé : Deuxième édition
Siècle(s) traité(s) : 18
Droits : Domaine public
Provenance : Collectivité territoriale de Guyane. Bibliothèque Alexandre-Franconie
Permalien : http://www.manioc.org/patrimon/FRA12009
FRA12009

Éditeur(s) : HAL CCSD BMJ Publishing Group
Résumé : International audience
We read with interest the report by Desrosiers et al 1 on the association between maternal occupational exposure to organic solvents and some birth defects. Their case-control study examined occupational exposure to three classes of solvents (chlorinated, aromatic and Stoddard) and found one association--between neural tube defects (mainly spinal bifida) and maternal occupational exposure to chlorinated solvents, but no association with the other solvent classes or with oral clefts. In their discussion, the authors noted that previous findings on maternal occupational exposure to solvents and oral clefts were from European, mainly French, populations and they hypothesised that the inconsistency between their results and these previous studies might be due to different exposure profiles (eg, intensity and solvent formulation). Although this explanation is plausible, another explanation must be discussed: differences in the definition of exposure. Our research team conducted four of the five studies with positive results cited by Desrosiers et al.2-5 All four were population based and included, in addition to the solvent classes considered by Desrosiers et al, oxygenated solvents, for example, alcohols or glycol ethers. Exposure limited to only oxygenated solvents appears to be very frequent among working women: more than half of the solvent exposure group in Chevrier et al 4 were exposed only to that solvent class. Because previous studies found an increased risk of oral clefts to be associated principally with that specific exposure, failure to consider this association could explain the negative findings for oral clefts. Moreover, women who were exposed only to oxygenated solvents are included in the reference ('non-exposed') group here, which would result in underestimating associations with chlorinated and petroleum solvents. For both these reasons, we believe that the failure to consider oxygenated solvents led to underestimating the risk estimates for oral clefts.
ISSN: 1351-0711

hal-00875943
https://hal.archives-ouvertes.fr/hal-00875943
DOI : 10.1136/oemed-2012-100999
PUBMED : 22843438

Éditeur(s) : HAL CCSD
Résumé : National audience
Objectif L’objectif était d’identifier des formes d’organisation du travail et d’étudier leur association avec les douleurs de l’épaule et le syndrome de la coiffe des rotateurs (SCR) chez les salariés, à partir des données du programme de surveillance épidémiologique des troubles musculo-squelettiques mis en œuvre dans les Pays de la Loire. Méthodes Entre 2002 et 2005, la participation volontaire de 83 médecins du travail a permis d’inclure par tirage au sort 3710 salariés lors de leur visite médicale périodique. Seize variables organisationnelles ont été recueillies par auto-questionnaire. Les symptômes de l’épaule ont été recueillis à l’aide d’un questionnaire de type nordique et le SCR a été diagnostiqué par le médecin à l’aide d’un examen clinique standardisé. Une classification ascendante hiérarchique (CAH) des variables organisationnelles puis des salariés ont permis d’identifier les différentes formes d’organisation du travail. Les associations entre les formes d’organisation du travail et les douleurs de l’épaule et le SCR ont été étudiées par des régressions logistiques ajustées sur des facteurs individuels, biomécaniques et psychosociaux. Résultats Cinq classes d’organisation du travail ont été identifiées. Une classe de salariés s’est révélée fortement exposée aux contraintes organisationnelles : – travail en équipe postée ; – polyvalence ; – faible latitude décisionnelle ; – répétitivité des tâches ; – rythme de travail imposé par : – le déplacement automatique d’un produit ou d’une pièce/la cadence automatique d’une machine, – la dépendance immédiate vis-à-vis du travail des collègues, – des normes de production ou des délais à respecter, – des contrôles ou une surveillance permanents. À l’inverse, elle était moins exposée au rythme de travail imposé par une demande extérieure (public, client) que l’ensemble de l’échantillon. Par rapport à cette classe, les salariés des quatre autres classes avaient un risque plus faible de douleurs de l’épaule au cours des 12 derniers mois (OR de 0,6 [0,5–0,7] à 0,8 [0,6–0,9]), permanentes au cours des 12 derniers mois (OR de 0,6 à 0,8 [0,5–1,0]) et au cours des 7 derniers jours (OR de 0,6 [0,4–0,9], à 0,8 [0,6–1,0]). L’association était non significative pour le SCR (p = 0,11). Conclusions L’étude a montré une association significative entre les douleurs de l’épaule et l’exposition à des contraintes organisationnelles. Ces résultats seront à confirmer à l’aide de modèles à équations structurelles
16e colloque scientifique de l’ADEREST
Lyon, France

hal-01187141
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187141
DOI : 10.1016/j.admp.2015.04.036

Éditeur(s) : HAL CCSD Awwa American Water Works Association
Résumé : International audience
A three-year study was conducted on the occurrence of disinfection by-products (DBPs) - trihalomethanes (THMs), haloacetic acids (HAAs), and haloacetonitriles - in drinking water of regions of Europe where epidemiology studies were being carried out. Thirteen systems in six countries (i.e., Italy, France, Greece, Lithuania, Spain, United Kingdom) were sampled. Typically chlorinated DBPs dominated. However, in most of Catalonia (Spain) and in Heraklion (Greece), brominated DBPs dominated. The degree of bromine incorporation into the DBP classes was in general similar among them. This is important, as brominated DBPs are a greater health concern. In parts of Catalonia, the reported levels of tribromoacetic acid were higher than in other parts of the world. In some regions, the levels of HAAs tended to be peaked in concentration in a different time period than when the levels of THMs peaked. In most epidemiology studies, THMs are used as a surrogate for other halogenated DBPs. This study provides exposure assessment information for epidemiology studies. © 2016 American Water Works Association.
ISSN: 0003-150X

hal-01406069
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01406069
DOI : 10.5942/jawwa.2016.108.0152

Résumé : Les méthodes classiques d'analyse d'images satellites sont inadaptées au volume actuel du flux de données. L'automatisation de l'interprétation de ces images devient donc cruciale pour l'analyse et la gestion des phénomènes observables par satellite et évoluant dans le temps et l'espace. Ce travail vise à automatiser la cartographie dynamique de l'occupation du sol à partir d'images satellites, par des mécanismes expressifs, facilement interprétables en prenant en compte les aspects structurels de l'information géographique. Il s'inscrit dans le cadre de l'analyse d'images basée objet. Ainsi, un paramétrage supervisé d'un algorithme de segmentation d'images est proposé. Dans un deuxième temps, une méthode de classification supervisée d'objets géographiques est présentée combinant apprentissage automatique par programmation logique inductive et classement par l'approche multi-class rule set intersection. Ces approches sont appliquées à la cartographie de la bande côtière Guyanaise. Les résultats démontrent la faisabilité du paramétrage de la segmentation, mais également sa variabilité en fonction des classes de la carte de référence et des données d'entrée. Les résultats de la classification supervisée montrent qu'il est possible d'induire des règles de classification expressives, véhiculant des informations cohérentes et structurelles dans un contexte applicatif donnée et conduisant à des valeurs satisfaisantes de précision et de KAPPA (respectivement 84,6% et 0,7). Ce travail de thèse contribue ainsi à l'automatisation de la cartographie dynamique à partir d'images de télédétection et propose des perspectives originales et prometteuses.
Classical methods for satellite image analysis are inadequate for the current bulky data flow. Thus, automate the interpretation of such images becomes crucial for the analysis and management of phenomena changing in time and space, observable by satellite. Thus, this work aims at automating land cover cartography from satellite images, by expressive and easily interpretable mechanism, and by explicitly taking into account structural aspects of geographic information. It is part of the object-based image analysis framework, and assumes that it is possible to extract useful contextual knowledge from maps. Thus, a supervised parameterization methods of a segmentation algorithm is proposed. Secondly, a supervised classification of geographical objects is presented. It combines machine learning by inductive logic programming and the multi-class rule set intersection approach. These approaches are applied to the French Guiana coastline cartography. The results demonstrate the feasibility of the segmentation parameterization, but also its variability as a function of the reference map classes and of the input data. Yet, methodological developments allow to consider an operational implementation of such an approach. The results of the object supervised classification show that it is possible to induce expressive classification rules that convey consistent and structural information in a given application context and lead to reliable predictions, with overall accuracy and Kappa values equal to, respectively, 84,6% and 0,7. In conclusion, this work contributes to the automation of the dynamic cartography from remotely sensed images and proposes original and promising perpectives

http://www.theses.fr/2013AGUY0671/document

Éditeur(s) : HAL CCSD
Résumé : International audience
In boundary lubrication regime, friction reduction and antiwear processes are associated to the presence of additives in the lubricating oils or greases. These processes are due to the formation of protective tribofilms resulting from chemical reactions between the additives and the sliding surfaces, in the physico-chemical conditions of the sliding contact. Conventional antiwear additives mainly consist of transition metal organo phosphate or thiophosphates which present a remarkable efficiency in the case of contacts between ferrous alloys. In the case of non reacting surfaces, these additives become inactive. Recently developped lubrication strategies consist in the use of dispersion in oils of nano additives able to build the protective tribofilm in the sliding contact without reaction with the surfaces. Carbon fluorinated phases, due to their lamellar structure and their high chemical stability even at relatively high temperature (400°C) represent interesting candidates as lubricant nano-additives subjected to present friction reduction, anti wear and anti corrosion actions. This work presents the tribologic behaviour of some carbon fluorinated derivatives such as graphite fluorides, fluorinated carbon nanofibers, fluorinated carbon nanodiscs and fluorinated carbon blacks. The influence, on the tribologic performances, of the structure of the initial carbon phases, of the fluorination rate (0
World Tribology Congress 2013
Torino, Italy

Droits : info:eu-repo/semantics/OpenAccess
hal-00926514
https://hal.archives-ouvertes.fr/hal-00926514
https://hal.archives-ouvertes.fr/hal-00926514/document
https://hal.archives-ouvertes.fr/hal-00926514/file/Delbe_9783.pdf
OATAO : 9783

Éditeur(s) : HAL CCSD
Résumé : International audience
In this work, we have led an analysis of the error of different global solar radiation prediction models according to the global solar radiation variability. Different predictions models where performed such as machine learning techniques (Neural Networks, Gaussian processes and support vector machines) in order to forecast the Global Horizontal solar Irradiance (GHI). We also include in this study a simple linear autoregressive (AR) model as well as two naive models based on persistence of the GHI and persistence of the clear sky index (denoted herein scaled persistence model). The models are calibrated and tested with data from three 3 French islands: Corsica (42.15°N ; 9.08°E), Guadeloupe (16.25°N ; 61.58°W) and Reunion (21.15°S ; 55.5°E). Guadeloupe and Reunion are located in a subtropical climatic zone whereas Corsica is in a tempered climatic zone. Hence the global solar radiation variation differs significantly. The output error of the different models was quantified by the nRSME. In order to quantify the influence of the global solar radiation variability on the forecasting models error we performed a classification of typical days according to different typical days. Each class of typical day is defined by a variation of global solar radiation rate. For each class and for each location, the selected forecasting models where performed and the error was quantified. With this analysis a global solar radiation forecasting models can be selected according to the location, the global solar radiation fluctuations and hence the meteorological conditions. INTRODUCTION Large and frequent variations of solar radiation can be observed in tropical climates with amplitudes reaching 800 W/m² and occurring within a short time interval, from few seconds to few minutes, according to the geographical location. Such fluctuations can be due for example to the dynamic of clouds which can be very complex and depend on cloud type, size, speed and spatial distribution and, more generally, due to some specific local meteorological conditions. Thus, the solar energy forecasting, a process used to predict the amount of solar energy available in the current and near terms, might be a difficult task. Some of the best predictors found in literature are Autoregressive and moving average (ARMA) [5,7,8], Bayesian inferences [9,10], Markov chains [11], k-Nearest-Neighbors predictors [12] or artificial intelligence techniques as the Artificial Neural Network (ANN) [9-11]. Although these methodologies are potentially good in many areas, we observed in our previous studies on global radiation prediction [9,13,14] that the simple model based on the persistence of the clear sky index gives often very good results with acceptable errors [15] for short term forecasting time horizon (<= 1 hour). The goal of this paper is to determinate the influence of solar radiation variability regarding different classes of days on the expected error provided by different forecasting methods that the modeller can possibly implement. The paper is organized as follow: Section 2 describes the data we have used. Section 3 exposes the classification methodology and the results obtained for the three studied locations. In the two following sections, the forecasting methods are exposed and then 3 the errors on the forecasting results for each location and for each class are exposed.
The Third Southern African Solar Energy Conference (SASEC2015)
Kruger National Park, South Africa

Droits : info:eu-repo/semantics/OpenAccess
hal-01099487
https://hal.archives-ouvertes.fr/hal-01099487
https://hal.archives-ouvertes.fr/hal-01099487/document
https://hal.archives-ouvertes.fr/hal-01099487/file/article%20SASEC.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
This work proposes an original approach using mutual information and Pareto curve jointly for feature selection. Mutual information is used to estimate dependency criterion between features and classes and redundancy criterion between features taken two by two. Unlike some studies, these criteria are used simultaneously to compute Pareto curve and determine the optimal feature sets. This approach is tested on more reference data. Several clustering algorithms are used to compute classification accuracy. The obtained results show the importance of our tools and its ability to select the best feature sets that give the better description.
GRETSI Proceedings
Bordeaux, France

hal-00602260
https://hal.archives-ouvertes.fr/hal-00602260

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Humans are exposed to a large number of contaminants, many of which may have similar health effects. This paper presents a framework for identifying pollutants to be included in a cumulative risk assessment approach. To account for the possibility of simultaneous exposure to chemicals with common toxic modes of action, the first step of the traditional risk assessment process, i.e. hazard identification, is structured in three sub-steps: (1a) Identification of pollutants people are exposed to, (1b) identification of effects and mechanisms of action of these pollutants, (1c) grouping of pollutants according to similarity of their mechanism of action and health effects. Based on this exposure-based grouping we can derive "multi-pollutant" toxicity reference values, in the "dose-response assessment" step. The approach proposed in this work is original in that it is based on real exposures instead of a limited number of pollutants from a unique chemical family, as traditionally performed. This framework is illustrated by the case study of semi-volatile organic compounds in French dwellings, providing insights into practical considerations regarding the accuracy of the available toxicological information. This case study illustrates the value of the exposure-based approach as opposed to the traditional cumulative framework, in which chemicals with similar health effects were not always included in the same chemical class.
ISSN: 0013-9351

hal-00982315
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00982315
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00982315/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00982315/file/An_exposure-based_framework_for_grouping_pollutants_accepted.pdf
DOI : 10.1016/j.envres.2014.01.007

Éditeur(s) : Paris : Imprimerie nationale
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Archives départementales de Guadeloupe
Permalien : http://www.manioc.org/patrimon/ADG17019
ADG17019

Éditeur(s) : Paris : V. Giard & E. Brière
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Ville de Pointe-à-Pitre. Réseau des bibliothèques
Permalien : http://www.manioc.org/patrimon/PAP11089
PAP11089

Éditeur(s) : HAL CCSD
Résumé :   Diffusion du document : INRA Antilles-Guyane, UMR ECOFOG, F97387 Kourou, Guyane (France) Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
This work on tropic al humid forest of Paracou includes 16 permanent sample plots covering a total surface of 119 hectares. Ten hectares of them are taken up by floodplains which characteristic is a continuous no-deep underground water level with phases of strong surface water logging. Three items have been studied : (i) Checking that during dry season the maps of the underground water level including its limits are reliable, (ii) Characterising the most suitable ecological niches for certain species, (iii) Additional updating the floodplains characterisation by precisely analysing the chemical soil content as well as the physiological reaction of the Symphonia Globulifera . Checking the underground water level in dry season enabled to put down to a quite good measurement reliability by GIS. The classification ecological of species proposed in this work is based on the relative density in floodplain and drain soil very similar to that which concerns a surface located ten or more kilometres further. This lets us assess that this classification is of a good reliability as long as the climate conditions are quite similar to ours in Paracou. Furthermore the presence of pneumatophores in the Symphonia Globulifera is a good biological criterion as long as it shows a long time ground moisture saturation. By analysing the life litter and the soil we mentioned that the leaf content and the soil content indicate a better nutritional value (phosphorus, calcium and potassium) in the floodplains. For phosphorus the relation between the life litter and the soil results put forward that the Olsen method gives a better explanation of the real phosphorus availability for the trees.
Le dispositif de recherche sur la forêt tropicale humide de Paracou est composé de 16 parcelles permanentes couvrant au total 119 ha, dont 10 ha sont occupés par des bas-fonds, caractérisés par l'existence permanente d'une nappe peu profonde et par des périodes de fort engorgement en surface. Notre étude avait trois objectifs : (i) vérifier la fiabilité des cartes de la profondeur de nappe en saison sèche, qui délimitent ces bas-fonds, (ii) caractériser les préférences écologiques de quelques espèces et (iii) compléter la caractérisation des bas-fonds par l'analyse de la richesse chimique du sol et l'étude de la réaction physiologique du Symphonia globulifera. La vérification sur la profondeur de nappe en saison sèche a montré que les imprécisions des cartes étaient d'ampleur limitée, sans incidence forte par rapport à l'ensemble des données. Le classement écologique des espèces proposé dans cette étude, basé sur leurs densités relatives dans les bas-fonds et hors des bas-fonds, est très similaire à celui présenté par une autre étude, dans un dispositif situé à plusieurs dizaines de kilomètres. Cela suggère que ce classement a une bonne validité, tant que les conditions climatiques ne diffèrent pas trop de celles rencontrées à Paracou. Par ailleurs, la présence des pneumatophores du Symphonia globulifera est un bon critère biologique signalant un engorgement hydrique prolongé du sol. Au niveau des analyses de la litière et du sol, les teneurs foliaires et les teneurs dans le sol semblent indiquer que la nutrition en phosphore, calcium et potassium est meilleure en bas-fonds. Au niveau de la méthode de mesure du phosphore assimilable, les relations entre les résultats de la litière et celles du sol suggèrent que la méthode d'Olsen rend mieux compte de la disponibilité effective du phosphore pour les arbres de la forêt tropicale humide que la méthode de Duchaufour.
https://hal.archives-ouvertes.fr/hal-01189229

hal-01189229
https://hal.archives-ouvertes.fr/hal-01189229
PRODINRA : 17050

Éditeur(s) : HAL CCSD IGI Global
Résumé : International audience
Standard data mining techniques have been applied and adapted for eliciting knowledge from social networks, by achieving classical tasks such as classification, search for frequent patterns or link prediction. Most works have exploited only the network topological structure, and therefore cannot be used to answer questions involving nodes features. For instance, the frequent pattern discovery task generally refers to the search for sub-networks frequently found in a single network or in a set of networks. In the same area, this paper focuses on the concept of frequent link that stands as a regularity found in a network on links between node groups that share common characteristics. The extraction of such links from a social network is a particularly challenging and computationally intensive problem, since it is much dependent on the number of links and attributes. In this study, we propose a solution for reducing the search space of frequent links, by filtering the nodes features on a criterion of frequency. We make the assumption that frequent links occur between sets of features that are themselves frequent. This property is used to reduce the search space and speed up the extraction process. We empirically show that it is well founded. We discuss the efficiency of the solution in terms of computation time and number of frequent patterns found depending on several frequency thresholds.
ISSN: 1947-8186

hal-00786166
https://hal.archives-ouvertes.fr/hal-00786166

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background : Trichoderma reesei is the main industrial source of cellulases and hemicellulases required for the hydrolysis of biomass to simple sugars, which can then be used in the production of biofuels and biorefineries. The highly productive strains in use today were generated by classical mutagenesis. As byproducts of this procedure, mutants were generated that turned out to be unable to produce cellulases. In order to identify the mutations responsible for this inability, we sequenced the genome of one of these strains, QM9136, and compared it to that of its progenitor T. reesei QM6a.Results : In QM9136, we detected a surprisingly low number of mutagenic events in the promoter and coding regions of genes, i.e. only eight indels and six single nucleotide variants. One of these indels led to a frame-shift in the Zn2Cys6 transcription factor XYR1, the general regulator of cellulase and xylanase expression, and resulted in its C-terminal truncation by 140 amino acids. Retransformation of strain QM9136 with the wild-type xyr1 allele fully recovered the ability to produce cellulases, and is thus the reason for the cellulase-negative phenotype. Introduction of an engineered xyr1 allele containing the truncating point mutation into the moderate producer T. reesei QM9414 rendered this strain also cellulase-negative. The correspondingly truncated XYR1 protein was still able to enter the nucleus, but failed to be expressed over the basal constitutive level.Conclusion : The missing 140 C-terminal amino acids of XYR1 are therefore responsible for its previously observed auto-regulation which is essential for cellulases to be expressed. Our data present a working example of the use of genome sequencing leading to a functional explanation of the QM9136 cellulase-negative phenotype.
ISSN: 1471-2164

Droits : http://creativecommons.org/licenses/by/
hal-01149671
http://hal.upmc.fr/hal-01149671
http://hal.upmc.fr/hal-01149671/document
http://hal.upmc.fr/hal-01149671/file/Lichius_2015_Genome_sequencing.pdf
DOI : 10.1186/s12864-015-1526-0