Éditeur(s) : HAL CCSD
Résumé : Les dossiers thématiques d'Agropolis, n° 11
Dans le contexte actuel de contraintes climatiques et socioéconomiques, les agricultures des zones sèches doivent évoluer afin de s’adapter et de répondre à un double défi : produire plus pour satisfaire les besoins alimentaires importants de populations en croissance, mais aussi produire mieux de façon viable et durable. Pour cela, les agricultures de ces zones doivent évoluer vers des modes de production à la fois plus productifs, économes en ressources naturelles et résistants aux aléas climatiques.Dans ce cadre, l’ingénierie écologique propose de nouvelles alternatives de gestion des systèmes agro-sylvo-pastoraux caractéristiques des régions arides et semi-arides d’Afrique subsaharienne. Ceci implique de maitriser la complexité des systèmes étudiés et de s’inspirer à la fois du fonctionnement des écosystèmes naturels de référence à la région agroécologique concernée — les savanes pour les zones sèches ouest-africaines — et des pratiques traditionnelles et savoir-faire locaux issus d’une longue adaptation face aux contraintes environnementales.À partir des expériences ouest-africaines notamment, différentes options pratiques sont exposées dans ce dossier. On pourra ainsi agir sur la biodiversité des organismes, que ce soit les plantes ou les microorganismes du sol par exemple, favoriser le recyclage des matières organiques et des éléments nutritifs pour les plantes qui sont associées, maitriser les cycles de l’eau et, enfin, agir sur l’organisation des paysages pour favoriser un meilleur contrôle des ravageurs de culture.Cependant, développer une telle approche demande une vision intégrée du fonctionnement et de l’évolution des systèmes agro-sylvo-pastoraux. Les questions sociales — le foncier, l’urbanisation et les migrations — et économiques — les marchés des denrées de première nécessité, la pauvreté, etc. — sont des déterminants essentiels qu’il convient de prendre en compte pour le développement durable des populations dans les zones sèches en Afrique subsaharienne.
https://hal.archives-ouvertes.fr/hal-01585038

hal-01585038
https://hal.archives-ouvertes.fr/hal-01585038

Éditeur(s) : HAL CCSD
Résumé : Microgeographic adaptation in tree stands. ATBC 2016
ATBC 2016
Montpellier, France

hal-01594984
https://hal.archives-ouvertes.fr/hal-01594984
PRODINRA : 365215

Éditeur(s) : HAL CCSD
International statistical ecology conference 2014
Montpellier, France

hal-01503286
https://hal-agroparistech.archives-ouvertes.fr/hal-01503286

Éditeur(s) : HAL CCSD Universidad de Malaga
Résumé : International audience
The development of information systems follows a long and complex process in which various actors are involved. We report an experiment in which we observe the evolution of the analysis model of an information system through 15 successive versions. We use indicators on the underlying concept lattices built by applying Relational Concept Analysis (RCA) to each version. RCA is an extension of FCA which groups entities based on characteristics they share, including links to other entities. It here helps in analyzing their evolution. From this experience, we establish recommendations to monitor and verify the proper evolution of the analysis process.
CLA'2012: 9th International Conference on Concept Lattices and Applications
Fuengirola (Málaga), Spain

ISBN : 978-84-695-5252-0
lirmm-00743886
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00743886
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00743886/document

Éditeur(s) : HAL CCSD IOP Publishing
Résumé : Tropical forests of the Guiana Shield are the most affected by gold-mining in South America,experiencing an exponential increase in deforestation since the early 2000’s.Using yearly deforestation data encompassing Guyana, Suriname, French Guiana and theBrazilian State of Amapá, we demonstrated a strong relationship between deforestation due togold-mining and gold-prices at the regional scale. In order to assess additional drivers ofdeforestation due to gold-mining, we focused on the national scale and highlighted theheterogeneity of the response to gold-prices under different political contexts. Deforestation dueto gold-mining over the Guiana Shield occurs mainly in Guyana and Suriname. On the contrary,past and current repressive policies in Amapá and French Guiana likely contribute to thedecorrelation of deforestation and gold prices. In this work, wefinally present a case studyfocusing on French Guiana and Suriname, two neighbouring countries with very different levelsof law enforcement against illegal gold-mining. We developed a modelling framework to estimatepotential deforestation leakages from French Guiana to Suriname in the border areas. Based onour assumptions, we estimated a decrease in deforestation due to gold-mining of approx. 4 300hectares in French Guiana and an increase of approx. 12 100 hectares in Suriname in response tothe active military repression of illegal gold-mining launched in French Guiana.Gold-mining in the Guiana Shield provides challenging questions regarding REDDþimplementation. These questions are discussed at the end of this study and are important topolicy makers who need to provide sustainable alternative employment to local populations inorder to ensure the effectiveness of environmental policies.
ISSN: 1748-9326

hal-01512075
https://hal.archives-ouvertes.fr/hal-01512075
https://hal.archives-ouvertes.fr/hal-01512075/document
https://hal.archives-ouvertes.fr/hal-01512075/file/document%20%2828%29_%7B81107B08-30D1-44D2-877D-32F6DFAEF28A%7D.pdf
DOI : 10.1088/1748-9326/aa6082

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Line transect surveys are widely used in neotropical rainforests to estimate the population abundance of medium- and large-sized vertebrates. The use of indices such as Encounter Rate has been criticized because the probability of animal detection may fluctuate due to the heterogeneity of environmental conditions among sites. In addition, the morphological and behavioral characteristics (biological traits) of species affect their detectability. In this study, we compared the extent to which environmental conditions and species' biological traits bias abundance estimates in terra firme rainforests in French Guiana. The selected environmental conditions included both physical conditions and forest structure covariates, while the selected biological traits included the morphological and behavioral characteristics of species. We used the distance sampling method to model the detection probability as an explicit function of environmental conditions and biological traits and implemented a model selection process to determine the relative importance of each group of covariates. Biological traits contributed to the variability of animal detectability more than environmental conditions, which had only a marginal effect. Detectability was best for large animals with uniform or disruptive markings that live in groups in the canopy top. Detectability was worst for small, solitary, terrestrial animals with mottled markings. In the terra firme rainforests which represent ~80% of the Amazonia and Guianas regions, our findings support the use of relative indices such as the encounter rate to compare population abundance between sites in species-specific studies. Even though terra firme rainforests may appear similar between regions of Amazonia and the Guianas, comparability must be ensured, especially in forests disturbed by human activity. The detection probability can be used as an indicator of species' vulnerability to hunting and, thus, to the risk of local extinction. Only a few biological trait covariates are required to correctly estimate the detectability of the majority of medium- and large-sized vertebrates. Thus, a biological trait model could be useful in predicting the detection probabilities of rare, uncommon or localized species for which few data are available to fit the detection function.
ISSN: 1051-0761

hal-01555267
https://hal.archives-ouvertes.fr/hal-01555267
DOI : 10.1002/eap.1549
PRODINRA : 396614
PUBMED : 28419598

Éditeur(s) : HAL CCSD
Résumé : International audience
26th Biennal meeting of the Caribbean academy of sciences
Deshaies, Guadeloupe

hal-01504621
https://hal-agroparistech.archives-ouvertes.fr/hal-01504621

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.
ISSN: 1932-6203

hal-01260289
https://hal.archives-ouvertes.fr/hal-01260289
PRODINRA : 342930
DOI : 10.1371/journal.pone.0141488

Éditeur(s) : HAL CCSD Wiley
Résumé :
How Quaternary climatic and geological disturbances influenced the composition of Neotropical forests is hotly debated. Rain fall and temperature changes during and/or immediately after the Last Glacial Maximum (LGM) are thought to have strongly affected the geographical distribution and local abundance of tree species. The paucity of the fossil records in Neotropical forests prevents a direct reconstruction of such processes. To describe community-level historical trends in forest composition, we turned therefore to inferential methods based on the reconstruction of past demographic changes. In particular, we modelled the history of rainforests in the Eastern Guiana Shield over a time scale of several thousand generations, through the application of Approximate Bayesian Computation (ABC) and Maximum Likelihood (ML) methods to diversity data at nuclear and chloroplast loci in eight species or subspecies of rainforest trees. Depending on the species and on the method applied, we detected population contraction, expansion or stability, with a general trend in favour of stability or expansion, with changes presumably having occurred during or after the LGM. These findings suggest that Guiana Shield rain forests have globally persisted, while expanding, through the Quaternary, but that different species have experienced different demographic events, with a trend towards the increase in frequency of light-demanding, disturbance-associated species.
ISSN: 0962-1083

hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150/document
https://hal.archives-ouvertes.fr/hal-01512150/file/Barthe_et_al-_%7B0B6A8C5E-DDFF-4C4E-822C-4E7BC22A6C9B%7D.pdf
DOI : 10.1111/mec.13949

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
We investigated infection of rodents and shrews by Leptospira spp. in two localities of Cambodia (Veal Renh, Kaev Seima) and in four types of habitat (forests, non-flooded lands, lowland rain-fed paddy fields, houses) during the wet and the dry seasons. Habitat preference was common, and rodent and shrew species were found only in houses or in rain-fed paddy fields or in forests. Among 649 small mammals trapped belonging to 12 rodent species and 1 shrew species, 71 of 642 animals tested were carriers of Leptospira according to the 16S ribosomal RNA marker used. Rodent infection was higher in low-slope locations, corresponding to rain-fed paddy fields, especially in the rainy season and in Kaev Seima. Rodents (Rattus exulans) and shrews (Suncus murinus) inhabiting households showed significantly low levels of infections, whereas rodents living in and near to forests (shrubby wasteland, orchards) showed high levels of infection.
American Journal of Tropical Medicine and Hygiene

pasteur-00808144
https://hal-riip.archives-ouvertes.fr/pasteur-00808144
DOI : 10.4269/ajtmh.2012.11-0349
PUBMED : 22665613

Éditeur(s) : HAL CCSD American Mosquito Control Association
Résumé : Research on natural insecticides has intensified with the spread of resistance to chemicals among insects, particularly disease vectors. To evaluate compounds, the World Health Organization (WHO) has published standardized procedures. However, those may be excessively compound-consuming when it comes to assessing the activity of natural extracts and pure compounds isolated in limited amount. As part of our work on the discovery of new mosquito larvicides from Amazonian plants, we developed a compound-saving assay in 5-ml glass tubes instead of WHO larval 100-m1 cups. Comparing activity of synthetic and natural chemicals validated the glass tube assay. Raw data, lethal doses that kill 50% (LD50) and 90% (LD90) at 24 and 48 h, were highly correlated (0.68 < R-2 < 0.96, P < 0.001, Pearson test) between cups and tubes. It was also established that 10 tubes (N = 50 larvae) provided the same level of sensitivity as 20 tubes (N= 100). This method proved suitable for rapid screening of natural extracts and molecules, identifying active compounds using 10 times less material than in the WHO protocol.
ISSN: 8756-971X

hal-01602207
https://hal.archives-ouvertes.fr/hal-01602207
DOI : 10.2987/16-6613.1
PRODINRA : 394297
PUBMED : 28206865

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
While the effects of deforestation and habitat fragmentation on parasite prevalence or richness are well investigated, host-parasite networks are still understudied despite their importance in understanding the mechanisms of these major disturbances. Because fragmentation may negatively impact species occupancy, abundance and co-occurrence, we predict a link between spatiotemporal changes in habitat and the architecture of host-parasite networks. For this, we used an extensive data set on 16 rodent species and 29 helminth species from seven localities of South-East Asia. We analysed the effects of rapid deforestation on connectance and modularity of helminth-parasite networks. We estimated both the degree of fragmentation and the rate of deforestation through the development of land uses and their changes through the last 20 to 30years in order to take into account the dynamics of habitat fragmentation in our statistical analyses. We found that rapid fragmentation does not affect helminth species richness per se but impacts host-parasite interactions as the rodent-helminth network becomes less connected and more modular. Our results suggest that parasite sharing among host species may become more difficult to maintain with the increase of habitat disturbance.
ISSN: 0021-8790

hal-01355307
https://hal.archives-ouvertes.fr/hal-01355307
DOI : 10.1111/1365-2656.12368
IRD : fdi:010064927

Éditeur(s) : HAL CCSD Société nationale de protection de la nature (France)
Résumé : International audience
Les plantes qui présentent des structures anatomiques permettant de retenir de l'eau en permanence sont assez répandues en milieu tropical. Si beaucoup sont maintenant cultivées pour être vendues en jardineries, faisant le bonheur des amateurs, elles forment en milieu naturel des écosystèmes aquatiques encore très peu étudiés et renferment une biodiversité que l'on est loin d'avoir recensée. En Amérique centrale et du Sud, les broméliacées-citerne, qui représentent les plus nombreuses et les plus diversifiées de ces " plantes-mares ", permettent à des organismes très variés d'accomplir leur cycle de vie
ISSN: 0011-0477

hal-00849049
https://hal.archives-ouvertes.fr/hal-00849049
https://hal.archives-ouvertes.fr/hal-00849049/document
https://hal.archives-ouvertes.fr/hal-00849049/file/Carrias2013_Des_plantes.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : Understanding the pattern in spatial distribution of soil microbial processes is critical to understand the environmental factors that regulate them as well as to scale up these processes to ecosystem. Soil samples from a I ha tropical rainforest plot (Paracou, French Guiana) were analyzed according a nested sampling approach using different separation distances ranging from 0.4 to 40 m. The variability of substrate induced respiration (SIR) and of denitrification enzyme activity (DEA) was characterized in relation to various soil properties (total C and N contents, NIRS related index of soil organic matter quality, SOMQ and index of tree influence potential, IP). The variability of SIR and DEA was higher than that of environmental properties. The patterns of accumulated variance as a function of distance varied among the soil properties. The variability of SIR and DEA mainly occurred at small (1 m) scale (and at the 10-40 m-scales for SIR), probably reflecting the quality of litter input that results of the influence of local assemblage of different tree species, though changes in the soil N and C contents. Indeed, total soil C and N contents explained the microbial properties at every scale. Coefficients of codispersion showed that neither SOMQ nor IP did correlate with SIR and DEA, and confirmed that total C and N contents explained microbial properties in a scale dependent and complex manner. Such spatial dependency underlines the importance of soil heterogeneity in this tropical forest with implications for sampling strategies when studying the microbial processes and their response to disturbances. (C) 2012 Elsevier B.V. All rights reserved.
ISSN: 0016-7061

hal-01032409
https://hal.archives-ouvertes.fr/hal-01032409
DOI : 10.1016/j.geoderma.2012.12.009

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
LiDAR (Light Detection And Ranging) remote sensing has been shown to be a good technique for the estimation of forest parameters such as canopy heights and above ground biomass. Whilst airborne LiDAR data are in general very dense but only available over small areas due to the cost of their acquisition, spaceborne LiDAR data acquired from the Geoscience Laser Altimeter System (GLAS) have a coarser acquisition density associated with a global cover. It is therefore valuable to analyze the integration relevance of canopy heights estimated from LiDAR sensors with ancillary data such as geological, meteorological, and phenological variables in order to propose a forest canopy height map with good precision and high spatial resolution.In this study, canopy heights extracted from both airborne and spaceborne LiDAR, were first extrapolated from available environmental data (e.g. geology, slope, vegetation indices, etc.). The estimated canopy height maps using random forest (RF) regression from the airborne or GLAS calibration datasets showed similar precisions (RMSE better than 6.5 m). In order to improve the precision of the canopy height estimates regression-kriging (kriging of random forest regression residuals) was used. Results indicated an improvement in the RMSE (decrease from 6.5 to 4.2 m) for the regression-kriging maps from the GLAS dataset, and from 5.8 to 1.8 m for the regression-kriging map from the airborne LiDAR dataset. Finally, in order to investigate the impact of the spatial sampling of future LiDAR missions on the precision of canopy height estimates, six subsets were derived from the initial airborne LiDAR dataset with flight line spacing of 5, 10, 20, 30, 40 and 50 km (corresponding to 0.29, 0.11, 0.08, 0.05, 0.04, and 0.03 points/km² respectively). Results indicated that using the regression-kriging approach achieved a precision of 1.8 m on the canopy height map with flight line spacing of 5 km and achieved an average RMSE of 4.8m for the configuration for the 50 km flight line spacing.
ISSN: 2072-4292

hal-01361343
https://hal.archives-ouvertes.fr/hal-01361343
https://hal.archives-ouvertes.fr/hal-01361343/document
https://hal.archives-ouvertes.fr/hal-01361343/file/mt2016-pub00048036.pdf
DOI : 10.3390/rs8030240

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
ISSN: 1631-0691

hal-01083754
https://hal-agroparistech.archives-ouvertes.fr/hal-01083754
DOI : 10.1016/j.crvi.2009.01.006

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Architectural analyses of temperate tree species using a chronological approach suggest that the expression of epicormic branches is closely related to low growth rates in the axes that make up the branching system. Therefore, sole consideration of epicormic criteria may be sufficient to identify trees with low secondary growth levels or with both low primary and secondary growth levels. In a tropical tree such as Dicorynia guianensis (basralocus), where chronological studies are difficult, this relationship could be very useful as an easily accessible indicator of growth potentials. A simple method of architectural tree description was used to characterize the global structure of more than 1650 basralocus trees and to evaluate their growth level. Measurements of simple growth characters [height, basal diameter, internode length of submittal part (top of the main axis of the tree)] and the observation of four structural binary descriptors on the main stem (presence of sequential branches and young epicormic branches, state of the submittal part, global orientation), indicated that epicormic branch formation is clearly related to a decrease in length of the successive growth units of the main stem. Analysis of height vs. diameter ratios among different tree subgroups, with and without epicormic branching, suggested that trees with epicormic branches generally have a low level of secondary growth compared with primary growth.
ISSN: 0305-7364

hal-01032037
https://hal.archives-ouvertes.fr/hal-01032037
DOI : 10.1093/aob/mcg119

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
*Context: Tree orientation is controlled by asymmetric mechanical stresses set during wood maturation. The magnitude of maturation stress differs between longitudinal and tangential directions, and between normal and tension woods. * Aims: We aimed at evaluating patterns of maturation stress on eucalypt plantation trees and their relation with growth, with a focus on tangential stress evaluation. * Methods: Released maturation strains along longitudinal and tangential directions were measured around the circumference of 29 Eucalyptus nitens trees, including both straight and leaning trees. * Results: Most trees produced asymmetric patterns of longitudinal maturation strain but more than half of the maturation strain variability occurred between trees. Many trees produced high longitudinal tensile stress all around their circumference. High longitudinal tensile stress was not systematically associated with the presence of gelatinous layer. The average magnitude of released longitudinal maturation strain was found negatively correlated to the growth rate. A methodology is proposed to ensure reliable evaluation of released maturation strain in both longitudinal and tangential directions. Tangential strain evaluated with this method was lower than previously reported. * Conclusion: The stress was always tensile along longitudinal direction and compressive along tangential direction, and their respective magnitude was positively correlated. This correlation does not result from a Poisson effect but may be related to the mechanism of maturation stress generation.
Annals of Forest Science

hal-00913611
https://hal.archives-ouvertes.fr/hal-00913611
https://hal.archives-ouvertes.fr/hal-00913611/document
DOI : 10.1007/s13595-013-0318-4

Éditeur(s) : HAL CCSD
Résumé : This paper presents a collection of wood species with important uses in musical instruments, in reference to historical and geographical cultural specificities, with ranges of viscoelastic vibrational properties by species. Data combine our experimental characterizations and extensive literature review, gathered in a specific relational database. An overview of vibrational properties' distribution on c.400 species is introduced. Two case studies of wood choices for a given function in different epochs or regions are presented: woods for European historical bows, and woods for idiophone bodies in different continents. Trends are contrasted: very different properties associated to historical changes in the first case; some common features over different regions in the second one.
Proceedings of the International Conference of COST Action IE0601 Wood Science for the Preservation of Cultural Heritage
Braga, Portugal

hal-00808403
https://hal.archives-ouvertes.fr/hal-00808403
https://hal.archives-ouvertes.fr/hal-00808403/document
https://hal.archives-ouvertes.fr/hal-00808403/file/Vibrational_properties_tropical_wood_Bremaud_al.pdf

Éditeur(s) : HAL CCSD
Résumé : absent
Séminaire forêts hétérogènes du GIP ECOFOR
NA, France

hal-01269340
https://hal.archives-ouvertes.fr/hal-01269340
PRODINRA : 331590