Éditeur(s) : Université de la Réunion
Résumé : The green turtle (Chelonia mydas) is an emblematic species of marine life. However, nowadays it is subject to many threats (poaching, by-catch). Even if there is deep growing measures for its protection, the green turtle still is an endangered species and it is listed in Appendix I of Washington Convention (CITES). In order to elaborate efficient conservation and management plans, perfect knowledge of green turtle biology, but also of its population structure and their characteristics, are needed. In this thesis, we have assessed genetic structure of green turtle populations in the South-Western Indian Ocean by using genetic tools. In all, 1551 tissue samples have been collected from our study zone and from our control site French Polynesia (37 samples). All kinds if individuals were sampled (except males in reproductive phase) from 15 sampling sites including nesting, foraging, and immature development site. We used both control region of mitochondrial DNA and 6 microsatellite loci to better infer maternal and paternal lineages. We identified 29 haplotypes in the South-Western Indian Ocean. They are distributed in 3 independent and highly divergent clades, including one composed with haplotypes from Atlantic Ocean. For 7 of these haplotypes, it was the first time they were detected in the study zone. Fifteen haplotypes were previously undescribed, distributed in all the 3 clades. These new haplotypes seem to be specific to the South-Western Indian Ocean, which is then an original zone. Besides, we found a high allelic richness. These results show the South-western Indian Ocean is rich and very diversified. This region plays an important role in the global diversity of the species. The South-Western Indian Ocean is one of the two contact zones presently known between the two metapopulations of green turtles (Atlantic-Mediterranean and Indo-Pacific). This contact induces a genetic cline based on CM8 (Atlantic) and C3 (Indo-Pacific) haplotype frequencies. Analysis of the microsatellite differentiation between individuals provides evidence of genetic exchanges between the two metapopulations in the region. The South-Western Indian Ocean participates to green turtle global genetic mixing. Studying the influence of several intrinsic and extrinsic factors on population structuring provides useful information for management plan elaboration. We found no significant difference between genetic structures of foraging females and males, contrary to immature turtles which seem to be organised in 'regional pools'. This organisation could be due to both immature natal homing and influence of oceanic currents. High mitochondrial differentiation of nesting females and low global microsatellite differentiation of our samples indicate male-mediated gene flow among populations of the study zone. The genetic composition of a sampling site presents no significant variation along the year, even if we could notice some trends. Nevertheless, it can be significantly different from a year to an other one. This may result from alternation of distinct populations on the same site. We noticed different evolution in 10 or 20 years of the genetic composition depending on the sampling site. Geographic distance seems not to have significant influence on population structuring concerning microsatellite markers. Nesting females of Saziley Beach (Mayotte Island, Comoros Archipelago) present genetic divergence from females nesting in the two other sampled beaches of this island. The observed population structure shows no contradiction with the organisation of oceanic currents in the South-Western Indian Ocean. Comparing the results from the two genetic markers used, we identified 8 genetic differentiated clusters of turtles in the study zone and at least 6 distinct populations. These clusters constitute 8 potential management units (MUs) which could serve as basis in the elaboration of conservation and management plans.
La tortue verte (Chelonia mydas) constitue l'un des espèces emblématiques de la vie marine, pourtant de nombreuses menaces pèsent de nos jours encore sur sa survie (braconnage, captures accidentelles). Ainsi, malgré l'essor de mesures de protection menées à travers pour sa sauvegarde, la tortue verte constitue une espèce 'en danger d'extinction' et figure dans l'Annexe I de la Convention de Washington (CITES). Afin d'élaborer des plans de gestion et de conservation qui soient efficaces, il est important d'avoir une parfaite connaissance de la biologie de la tortue verte, mais aussi de la structure de ses populations et de leurs caractéristiques. C'est dans ce cadre que s'inscrit la présente étude. L'objectif de cette étude était d'acquérir des connaissances sur la structure des populations de tortues vertes dans le sud-ouest de l'océan Indien grâce à l'utilisation de l'outil génétique. Au total, 1551 échantillons de tissu ont été collectés dans la zone d'étude et dans notre site témoin la Polynésie française (37 échantillons). Toutes les catégories d'individus ont été échantillonnées (excepté les mâles en phase de reproduction) et les 15 sites d'échantillonnage comprennent à la fois des sites de ponte, d'alimentation et de développement pour les immatures. Deux types de marqueurs ont été utilisés : la région contrôle de l'ADN mitochondrial et 6 loci microsatellites, afin d'appréhender au mieux l'apport des lignées maternelles et paternelles. Nous avons pu mettre en évidence la présence dans le sud-ouest de l'océan Indien de 29 haplotypes distincts, appartenant à trois clades fortement divergents dont l'un constitué d'haplotypes originaires de l'océan Atlantique. Parmi ces haplotypes, 7 ont été détectés pour la première fois dans la zone d'étude, et 15 autres n'ont jamais été précédemment décrits chez cette espèce. Ils sont présents dans chacun des 3 clades d'haplotypes. Ces nouveaux haplotypes semblent spécifiques à la région, et en font une zone originale. On observe par ailleurs une grande richesse allélique dans les effectifs analysés. Ces résultats montrent que le sud-ouest de l'océan Indien est une zone riche et très diversifiée. Cette région joue un rôle important dans la diversité génétique globale de l'espèce. Le sud-ouest de l'océan Indien constitue l'une des deux seules zones connues à l'heure actuelle de contact entre les deux métapopulations de tortues vertes (Atlantique-Méditerranée et Indo-Pacifique). Ce contact a entraîné la formation d'un cline génétique portant principalement sur les fréquences relatives des haplotypes CM8 (Atlantique) et C3 (Indo-Pacifique). Les résultats obtenus lors de l'analyse microsatellite de la différenciation entre les individus originaires des deux métapopulations montrent que le sud-ouest de l'océan Indien constitue une zone d'échanges génétiques entre les deux métapopulations, participant au brasage génétique de l'espèce. L'étude de facteurs, intrinsèques et extrinsèques, pouvant influencer la structuration des populations apportent de nombreuses informations qui pourraient s'avérer utiles lors de l'élaboration de plans de gestion. La structure des femelles et des mâles en alimentation ne diffère pas, contrairement à celle des immatures qui semble s'organiser en 'pools régionaux' qui seraient le fruit de l'interaction d'un comportement de philopatrie et d'une influence des courants océaniques. La forte différenciation mitochondriale des femelles en ponte et la très faible différenciation microsatellite observée à l'échelle de la région, indiquent l'existence de flux de gènes via les mâles. La composition génétique d'un site ne varie pas de manière significative au cours de l'année. Par contre, elle peut varier d'une année à l'autre, signifiant l'alternance dans certains sites de ponte de plusieurs populations distinctes. L'évolution de la composition génétique d'un groupe, au cours de 10 ou 20 ans, diffère selon le site considéré. La distance ne semble pas influencer de manière significative la structuration des populations au niveau microsatellite. Les femelles en ponte sur la plage de Saziley (Mayotte) diffèrent génétiquement de celles pondant sur les deux autres plages de l'île. La structure observée des populations est en accord avec l'organisation des courants océanique dans la région. La confrontation des résultats obtenus à partir des deux marqueurs génétiques utilisés, permet la détermination de 8 ensembles génétiquement différenciés dans la zone d'étude et l'identification d'au moins 6 populations distinctes. Ces ensembles constituent autant d'unités de gestion (MUs) potentielles qui pourront servir de base à l'élaboration de plans de gestion et de conservation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-3532.pdf
http://archimer.ifremer.fr/doc/00000/3532/

Éditeur(s) : Soc Francaise D Ichtyologie
Résumé : The ichtyofauna of Geyser and Zelee coral banks (north of Mozambique canal) was investigated in 1996, this work being the first quantitative study on this area. Quantitative data were collected on 11 stations (mean depth 18 m) by visual observations along 50 m transect, widened to 2 m for small sedentary species, and to 5 m for commercial species with a large action range. The main descriptors of the fish communities (species richness, abundance per species) and the trophic structure (omnivorous, herbivorous, carnivorous, browsers of sessile invertebrates) were described and analysed.A total of 294 fish species, belonging to 43 families were recorded. The species richness varied from 45 to 83 species / station, and the abundance, from 292 to 1322 individuals / 100 m(2), the lower values being recorded on the inner slope and the higher ones on the outer slope. In terms of number of individuals, diurnal planktivores were highly represented at all sites (mean 63.7%). Pomacentridae and Caesionidae were the most abundant families, damselfishes being mainly represented by Chromis ternatensis (mean 73 ind., max, 148 ind. 100 m(2)), C. dimidiata (mean 33 ind., max. 151 ind. / 100 m(2)) and Dascyllus carneus (mean 38 ind., max. 92 ind. 100 m(2)), and fusiliers by Pterocaesio chrysozona (mean 19 ind., max. 128 ind. / 100 m(2)), P. tile (mean 12 ind., max. 38 ind. / 100 m(2)) and Caesio teres (mean 6 ind., max. 32 ind. / 100 m(2)). The high values recorded showed that small and isolated coral banks can support relatively rich fish faunas and substantial populations of individuals. This result may be explained by different factors such as the oceanographic circulation favourable to a localised enrichment of nutrients from surface water, the low human impact, a good coral cover and a high degree of self-recruitment associated with regional recruitment. Nevertheless, the main commercial species such as Lutjanus bohar and Variola louti, observed at each station, were represented at a low density (mean 0.8 ind., max. 6 ind. / 100 m(2) and mean 0.2 ind., max. 0.8 ind. / 100 m(2) respectively). This result may be due to the exploitation of these coral banks between 1990 and 1992, which was interrupted following the fast decreasing output.Such an experience shows us the fragility of these small coral banks and the necessity to establish a rational management of the resource.
Cybium (0399-0974) (Soc Francaise D Ichtyologie), 2002 , Vol. 26 , N. 1 , P. 11-26

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10132/7687.pdf
http://archimer.ifremer.fr/doc/00000/10132/

Éditeur(s) : HAL CCSD
Résumé : Integrating ecological connectivity into marine ecosystem management and planning is important, especially in a global context of severe fish stocks depletion and growing habitat degradation. Environmental tools such as Marine Protected Areas have been proposed to protect biodiversity, restore damaged ecosystems, sustain fisheries, and rebuild overexploited stocks. The effectiveness of marine protected areas depends in part on the maintenance of connectivity between marine populations, linked by ecological processes such as larval dispersal. In this thesis, we applied a biophysical model driven by ocean currents derived from satellite altimetry to evaluate connectivity between Western Indian Ocean reefs and across the current MPA system in the Mediterranean Sea. We applied different methods of analysis such as graph-theoretic and clustering. In the Western Indian Ocean, marine connectivity analyses show that the number of connections between reefs increases with fish pelagic larval duration. It also highlights a low connectivity across the region and a high interconnectivity within several regions (Mozambique Channel, Mascarene archipelago). In the Mediterranean Sea, connectance is globally low at the regional scale. This connectance is more important in Western than Eastern Mediterranean. Moreover, the marine connectivity analyses revealed high domestic connectivity rates. Depending on the study area, priority reefs or sites for MPA implementation are proposed. Finally, implications for transboundary marine policies and regional cooperation are discussed.
Intégrer les connaissances sur la connectivité écologique dans la gestion des écosystèmes marins est essentiel, surtout dans un contexte d'appauvrissement des ressources marines et de dégradation des habitats côtiers à l'échelle mondiale. Des outils environnementaux, tels que les Aires Marines Protégées ont été mises en œuvre pour protéger la biodiversité, restaurer les écosystèmes endommagés, soutenir les pêcheries et reconstituer les stocks surexploités. Leur efficacité dépend en partie du maintien de la connectivité entre les populations marines, assurée à travers divers processus écologiques dont la dispersion larvaire. Dans le cadre de ce travail de thèse, un modèle biophysique intégrant des données de courants, issues de mesures d'altimétrie par satellite, a été utilisé pour évaluer la connectivité entre les récifs de l'océan Indien d'une part, et à travers le réseau d'AMP de Méditerranée d'autre part. Différentes méthodes d'analyse ont été utilisées, telles que la théorie des graphes et le clustering. Dans l'océan Indien occidental, l'analyse des connectivités marines montre que le nombre de connexions entre les récifs augmente avec la durée de vie larvaire des poissons. Elle met également en évidence une faible connectivité à l'échelle de la région, mais une forte inter-connectivité au sein de plusieurs sous-régions (Canal du Mozambique, Mascareignes). En Méditerranée, la connectance est globalement faible à l'échelle régionale, bien que plus importante dans le bassin occidental que le bassin oriental. L'analyse des connectivités marines montre également un taux de connectivité élevé à l'échelle d'un même pays. Selon le cas d'étude, une liste de récifs ou de sites prioritaires dans la mise en œuvre des AMP a été proposée. Enfin, les implications de ces résultats en termes de politiques transfrontalières et de coopération régionale sont discutées.
https://tel.archives-ouvertes.fr/tel-01269631

NNT : 2015LARE0003
tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631/document
https://tel.archives-ouvertes.fr/tel-01269631/file/2015lare0003_ECrochelet.pdf

Éditeur(s) : HAL CCSD Linnean Society of London
Résumé : International audience
Although migratory pelagic fishes generally exhibit little geographic differentiation across oceans, as expected from their life-history (broadcast spawning, pelagic larval life, swimming ability of adults) and the assumed homogeneity of the pelagic habitat, exceptions to the rule deserve scrutiny. One such exception is the narrow-barred Spanish mackerel (Scomberomorus commerson), where strong genetic heterogeneity at the regional scale has been previously reported. We investigated the genetic composition of S. commerson across the Indo-West Pacific range using control-region sequences (including previously published datasets), cytochrome-b gene partial sequences, and eight microsatellite loci, to further explore its phylogeographic structure. All haplotypes sampled from the Indo-Malay-Papua archipelago (IMPA) and the southwestern Pacific coalesced into a clade (Clade II) that was deeply separated (14.5% nucleotide divergence) from a clade grouping all haplotypes from the Persian Gulf and Oman Sea (Clade I). Such a high level of genetic divergence suggested the occurrence of two sister-species. Further phylogeographic partition was evident between the western IMPA and the regions sampled east and south of it, i.e. northern Australia, West Papua, and the Coral Sea. Strong allele-frequency differences were found between local populations in the southwestern Pacific, both at the mitochondrial locus (ΦST=0.282-0.609) and at microsatellite loci (^θ=0.202-0.313). Clade II consisted of four deeply divergent subclades (9.0-11.8% nucleotide divergence for the control region; 0.3-2.5% divergence at the cytochrome b locus). Mitochondrial sub-clades within Clade II generally had narrow geographic distribution, demonstrating further genetic isolation. However, one particular haplogroup within Clade II was present throughout the central Indo-West Pacific; that haplogroup was found to be sister-group to an haplogroup restricted to West Papua and the Coral Sea, yielding evidence of recent secondary westward colonization. Such a complex structure is in sharp contrast with the generally weak phylogeographic patterns uncovered to date in other widely distributed, large pelagic fishes with pelagic eggs and larvae. We hypothesize that in S. commerson and possibly other Scomberomorus species, philopatric migration may play a role in maintaining the geographic isolation of populations by annihilating the potential consequences of passive dispersal.
Biological Journal of the Linnean Society

ird-00759711
http://hal.ird.fr/ird-00759711
http://hal.ird.fr/ird-00759711/document

Éditeur(s) : HAL CCSD Linnean Society of London
Résumé : International audience
Although migratory pelagic fishes generally exhibit little geographic differentiation across oceans, as expected from their life-history (broadcast spawning, pelagic larval life, swimming ability of adults) and the assumed homogeneity of the pelagic habitat, exceptions to the rule deserve scrutiny. One such exception is the narrow-barred Spanish mackerel (Scomberomorus commerson), where strong genetic heterogeneity at the regional scale has been previously reported. We investigated the genetic composition of S. commerson across the Indo-West Pacific range using control-region sequences (including previously published datasets), cytochrome-b gene partial sequences, and eight microsatellite loci, to further explore its phylogeographic structure. All haplotypes sampled from the Indo-Malay-Papua archipelago (IMPA) and the southwestern Pacific coalesced into a clade (Clade II) that was deeply separated (14.5% nucleotide divergence) from a clade grouping all haplotypes from the Persian Gulf and Oman Sea (Clade I). Such a high level of genetic divergence suggested the occurrence of two sister-species. Further phylogeographic partition was evident between the western IMPA and the regions sampled east and south of it, i.e. northern Australia, West Papua, and the Coral Sea. Strong allele-frequency differences were found between local populations in the southwestern Pacific, both at the mitochondrial locus (ΦST=0.282-0.609) and at microsatellite loci (^θ=0.202-0.313). Clade II consisted of four deeply divergent subclades (9.0-11.8% nucleotide divergence for the control region; 0.3-2.5% divergence at the cytochrome b locus). Mitochondrial sub-clades within Clade II generally had narrow geographic distribution, demonstrating further genetic isolation. However, one particular haplogroup within Clade II was present throughout the central Indo-West Pacific; that haplogroup was found to be sister-group to an haplogroup restricted to West Papua and the Coral Sea, yielding evidence of recent secondary westward colonization. Such a complex structure is in sharp contrast with the generally weak phylogeographic patterns uncovered to date in other widely distributed, large pelagic fishes with pelagic eggs and larvae. We hypothesize that in S. commerson and possibly other Scomberomorus species, philopatric migration may play a role in maintaining the geographic isolation of populations by annihilating the potential consequences of passive dispersal.
ISSN: 0024-4066

ird-00759711
http://hal.ird.fr/ird-00759711
http://hal.ird.fr/ird-00759711v2/document
http://hal.ird.fr/ird-00759711/file/FauvelotBorsa_Scomberomorus%20commerson%20p%20HAL.pdf

Éditeur(s) : HAL CCSD International Phycological Society
Résumé : International audience
We studied a group of monoraphid diatom species (Bacillariophyceae, Achnanthidiaceae) found in the marine coastal environment of tropical islands of the Caribbean Sea, western Atlantic Ocean, Indian Ocean, South Pacific Ocean, the Adriatic Sea and the Black Sea. Based on light and electron microscope examination, Madinithidium was formally described as a genus new to science with the generitype defined as Madinithidium undulatum. The characteristic features of the valve structure are a strongly developed sternum and raphe sternum, transapical striae formed by a single areola (macroareolae) positioned in small depressions, elevated virgae and coaxial internal central raphe endings. Furthermore, the striae of both raphe and sternum valves are closed by finely perforated hymenes. Madinithidium and Achnanthidium species are difficult to identify correctly with light microscopy since their valves are small and finely structured. Four species recently described from the western Indian Ocean and assigned to Achnanthidium sensu lato – Achnanthidium capitatum, A. flexuistriatum, A. pseudodelicatissimum and A. scalariforme – possessed morphological features permitting their placement into Madinithidium gen. nov. The above-mentioned species were formally transferred to the new genus.
ISSN: 2330-2968

hal-01333391
https://hal-univ-perp.archives-ouvertes.fr/hal-01333391
DOI : 10.2216/14-21R2

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : This paper aims to explore the complex relationships between international tourism and the production and exchange of 'nature' in tropical countries. It is based on data gathered through an ethnographic case study approach on the changing aesthetic, economic and symbolic values attached to the coral reef in the tropical island of La Réunion, Indian Ocean. The analysis of this data shows that, from the point where the collective imaginaries in the Western world associate a 'magic' value with corals, an international institutionalisation process takes place in order to protect and preserve coral reefs and make them touristically accessible. This raises important issues related to the challenges the new value of tropical nature represents for the communication and exchange systems of communities in tropical countries. The paper first explores the meanings of the spiritual and religious value Western societies attribute to coral reefs. It then discusses the institutionalisation of tropical nature by international organisations and the problem of parallel land and natural space ownership systems in La Réunion. After that, it deconstructs the mystification policy of the coral reef operated by local institutions in La Réunion and examines the meaning of protecting the coral reef as a socially embedded 'communicative action' in La Réunion.
L’objectif de cette étude est d’explorer les relations complexes entre d'une part le tourisme international et d'autre part la production et l'échange de 'nature' dans des pays tropicaux. L'étude est basée sur des données recueillies à travers une approche ethnographique des valeurs esthétiques, économiques et symboliques attachées au récif corallien de l'île de La Réunion, dans l'océan Indien. L'analyse de ces données montre qu'à partir du moment où les imaginaires collectifs de l'Occident associent les coraux à une valeur 'magique', un processus d'institutionnalisation internationale s’engage dans le but de protéger, préserver et rendre accessibles au tourisme les récifs coralliens. Ceci implique des problématiques importantes liées à la mise à l'épreuve des systèmes de communication et d'échange des sociétés dans les pays tropicaux. L'étude explore d'abord la signification des valeurs spirituelles et religieuses qu'attribuent les sociétés occidentales aux récifs coralliens. Ensuite, elle discute l'institutionnalisation de la nature tropicale par des organisations internationales ainsi que le problème de l'existence de différents systèmes de gestion foncière à La Réunion. Enfin, l'étude déconstruit la politique de mythification du récif corallien mise en œuvre par des institutions locales à La Réunion et examinera la signification de 'protéger l'environnement' en tant qu'action communicante définie par les systèmes de communication et d'échange réunionnais.
Réunion

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1112
http://journals.openedition.org/etudescaribeennes/1112

Éditeur(s) : Elsevier Science Bv
Résumé : Total lipid content and lipid class composition were analyzed in gonads, liver and white muscle of yellowfin tuna (Thunnus albacares) throughout ovary development to understand its reproductive allocation strategy and to assess the relation between female condition and reproduction. A total of 112 females were collected onboard purse-seiner in the Western Indian Ocean from January to March 2009, from June to July 2009, and from April to May 2010. Gonads were characterized by highly variable total lipid contents ranging from 5 to 27 μg mg−1 of wet weight (ww) with a predominance of neutral lipids, mainly triacylglycerols (TAG) and sterol- and wax-esters. The different lipid classes in gonads described an accumulative pattern through the maturity process from immature to hydration phase. Total lipid content in liver varied from 10 to 21 μg mg−1 ww, and serves as fuel for yellowfin tuna reproduction. TAG and phospholipid deposits became depleted as the ovary developed, suggesting a transfer of lipids directly from liver to the oocytes during vitellogenesis. In contrast, muscle total lipid content was low and constant throughout ovarian development (2.5–6 μg mg−1 ww). Hence, yellowfin tuna can be defined as an income-capital breeder species for which the cost of reproduction depends mainly on concurrent energy income from feeding and only little on stored lipids. Besides, no significant relationship between gonad lipid composition and fecundity was found in females able to spawn. Finally, the influence of yellowfin tuna aggregation behaviour on reproductive female condition has been investigated: gonad total lipid contents were higher in females caught in free-swimming schools than in females caught under fish aggregating devices (FADs). However, these results did not clarify whether the influence of FADs on associated yellowfin tuna affects their reproductive capacity.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2014-12 , Vol. 160 , P. 50-59

Droits : 2013 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00171/28266/28075.pdf
DOI:10.1016/j.fishres.2013.12.010
http://archimer.ifremer.fr/doc/00171/28266/

Éditeur(s) : HAL CCSD Magnolia Press
Résumé : International audience
A new species of wrasse, Macropharyngodon pakoko, is described from the Marquesas Islands, bringing the total number of species of the genus Macropharyngodon to 12. Macropharyngodon pakoko was found at depths from 0-42 m and is endemic to the Marquesas Islands. Macropharyngodon pakoko is similar to M. meleagris, which is widely distributed from the central and western Pacific to Cocos-Keeling in the Indian Ocean, but differs genetically and in several coloration characters: males with irregularly curved black humeral blotch with incomplete iridescent blue border; inverted irregular " U "-shaped band on the cheek; a small black spot at the upper base of the pectoral fin; and background color of the body greenish with faint bluish black spots on each scale. Females lack black pigment on the chest posterior to the ventral attachment of the gill membranes; reddish black blotches on the body are widely spaced, particularly on the head where they are more reddish and half the size of those on body; caudal fin with small, bright yellow spots arranged in narrow vertical bands with pale interspaces; pelvic fins pale with three reddish yellow cross-bands; a small black spot at the upper base of the pectoral fin; and small reddish spots along the base of the anal fin. Juveniles have irregular black blotches on the body, a small black spot instead of an ocellus posteriorly on the dorsal fin and lack large black spots and ocellus on the anal fin.
ISSN: 1175-5326

Droits : http://creativecommons.org/licenses/by/
hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/file/7387-23089-2-PB.pdf
DOI : 10.11646/zootaxa.3857.3.6

Éditeur(s) : Springer
Résumé : We investigated the habitat use in green turtles exploiting a 13-ha multispecific seagrass meadow at Mayotte Island, south-western Indian Ocean. A phytoecological survey shows the occurrence of eight seagrass species, dominated by Halodule uninervis and Syringodium isoetifolium, distributed according to four distinct seagrass communities along the depth gradient. Direct underwater censuses show that green turtles occurred all over the meadow. Yet when community relative surface area was taken into account green turtles preferentially frequented the most seaward, biomass-richer S. isoetifolium-dominated community, suggesting that green turtles compensate for their intrinsically nutrient-poor herbivorous diet. Additionally, smaller (80 cm standard curved carapace length, SCCL) individuals also preferentially occurred in the most shoreward H. univervis-dominated community where no larger ([80 cm SCCL) individuals were sighted, suggesting habitat use is indicative of diet selection and may reflect size-specific food requirements and physiology.
Marine Biology (0025-3162) (Springer), 2010-12 , Vol. 157 , N. 12 , P. 2581-2590

Droits : 2010 Springer
http://archimer.ifremer.fr/doc/00018/12918/10201.pdf
DOI:10.1007/s00227-010-1520-7
http://archimer.ifremer.fr/doc/00018/12918/

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Large-scale periodic undulations within the oceanic and continental lithospheres revealed by a number of observations, are often treated as compressive instabilities, i.e. lithospheric buckling or folding. These undulations are normally associated with intensive faulting, which raises questions on the role of faulting in the folding process, and even on the possibility of folding in highly faulted media. In this study, we demonstrate that folding can "survive" faulting and that both processes may develop concurrently, so that faulting may serve as a mechanism of folding in the brittle domain. We support this hypothesis by direct numerical modeling. The results are compared with the data on three most prominent and well-known cases of the oceanic and continental folding-like deformation ("Indian Ocean" type, "Western Gobi (central Asia)" type and "Central Australian" type). We demonstrate that under reasonable tectonic stresses, folds can develop from faults cutting through the brittle parts of the lithosphere. The predicted wavelengths and nite growth rates are in agreement with the observations. We also show that within a continental lithosphere with thermotectonic age greater than 400 My, either a bi-harmonic mode (two superimposed wavelengths, crustal and mantle one) or a coupled mode (mono-layer deformation) of inelastic folding can develop, depending on the strength and thickness of the lower crust.
ISSN: 0094-8276

ird-00388016
http://hal.ird.fr/ird-00388016
http://hal.ird.fr/ird-00388016/document
http://hal.ird.fr/ird-00388016/file/fig3.pdf
http://hal.ird.fr/ird-00388016/file/fig1.pdf

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : International audience
Assessing population connectivity is necessary to construct effective marine protected areas. This connectivity depends, among other parameters, inherently on species dispersal capacities. Isolation by distance (IBD) is one of the main modes of differentiation in marine species, above all in species presenting low dispersal abilities. This study reports the genetic structuring in the tropical hydrozoan Macrorhynchia phoenicea (sensu Postaire et al., 2016a), a brooding species, from 30 sampling sites in the Western Indian Ocean and the Tropical Southwestern Pacific, using 15 microsatellite loci. At the local scale, genet dispersal relied on asexual propagation at short distance, which was not found at larger scales. Considering one representative per clone, significant positive F-IS values (from -0.327*** to 0.411***) were found within almost all sites. Gene flow was extremely low at all spatial scales, among sites within islands (<10km distance) and among islands (100 to >11,000km distance), with significant pairwise F-ST values (from 0.035*** to 0.645***). A general pattern of IBD was found at the Indo-Pacific scale, but also within ecoregions in the Western Indian Ocean province. Clustering and network analyses identified each island as a potential independent population, while analysis of molecular variance indicated that population genetic differentiation was significant at small (within island) and intermediate (among islands within province) spatial scales. As shown by this species, a brooding life cycle might be corollary of the high population differentiation found in some coastal marine species, thwarting regular dispersal at distances more than a few kilometers and probably leading to high cryptic diversity, each island housing independent evolutionary lineages.
ISSN: 2045-7758

hal-01681593
https://hal.archives-ouvertes.fr/hal-01681593
DOI : 10.1002/ece3.3236

Éditeur(s) : Elsevier
Résumé : The ability of captive-reared turtles to survive in the wild is not precisely known, nor are movements of immature turtles in the open ocean. To provide information on these issues, a satellite tracking experiment was conducted in the western Indian Ocean to monitor oceanic movements of immature green turtles. Two wild turtles and four captive-reared individuals were tracked. The latter had been displaced after birth from nesting sites to a distant rearing site. Wild turtles survived after release, but did not move far away from release site. We hypothesize that this resident behaviour may be explained by stage-specific habitat requirements. Captive-reared turtles survived after release and migrated over thousands of kilometres. Among these, the oldest immature turtles retrieved the foraging sites of their native population, with movement patterns similar to those displayed by adults. Observed movements may be linked to hydrographic conditions such as general oceanic circulation, sea temperature and thermal fronts. (C) 2003 Editions scientifiques et medicales Elsevier SAS and Ifremer/IRD/Inra/Cemagref. All rights reserved.
Aquatic Living Resources (0990-7440) (Elsevier), 2003 , Vol. 16 , N. 1 , P. 35-41

Droits : 2003 Ifremer/IRD/Inra/Cemagref. Published by Elsevier, Paris
http://archimer.ifremer.fr/doc/2003/publication-573.pdf
DOI:10.1016/S0990-7440(03)00005-6
http://archimer.ifremer.fr/doc/00000/573/

Éditeur(s) : Elsevier
Résumé : As top predators of pelagic food webs, large fish naturally bioaccumulate mercury (Hg). Determining Hg burdens in commercialized fish is essential considering the concern about effects of contaminants on human health and the legal thresholds that are therefore set for local consumption and/or exportation. Total Hg levels were measured in the muscular tissue of 183 fish of five commercially important species from the tropical zone of the Western Indian Ocean. All individuals were measured and sexed in order to study the impregnation of Hg with size and sex within each species. Values of Hg found in this part of the Indian Ocean were comparable to Hg in muscular tissue of the same species studied in other areas. The highest Hg levels were noted in Swordfish (Xiphias gladius) caught in waters surrounding Reunion Island (3.97 +/- 2.67 mu g g(-1) dry weight). Following the Swordfish, in decreasing order of Hg content, were the Yellowfin Tuna (Thunnus albacares) and the Skipjack (Katsuwonus pelamis), then the Common Dolphinfish (Coryphaena hippurus) and the Wahoo (Acanthocybium solandri). In the North of the Mozambique Channel, Swordfish had higher Hg levels than Yellowfin Tunas, and Dolphinfish exhibited intermediate Hg levels. The size of a fish was a determining factor of its Hg burden, as was the species. Differences in size-normalized Hg levels were observed between the two study zones for Swordfish and Common Dolphinfish. Sex, in contrast, did not influence Hg levels suggesting that females and males have similar feeding habits. The muscular Hg levels presented here suggest that consumers of fish originating from the Western Indian Ocean should limit themselves to one Swordfish based meal per week, or one fish meal a day if they choose to eat tuna or Common Dolphinfish. (c) 2006 Elsevier B.V. All rights reserved.
The Science of The Total Environment (0048-9697) (Elsevier), 2006-08 , Vol. 366 , N. 2-3 , P. 688-700

Droits : 2006 Elsevier
http://archimer.ifremer.fr/doc/2006/publication-1862.pdf
DOI:10.1016/j.scitotenv.2006.02.006
http://archimer.ifremer.fr/doc/00000/1862/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A comprehensive inventory of global biodiversity would be greatly improved by automating methods for species delimitation. The Automatic Barcode Gap Discovery method, the Poisson tree processes algorithm and the Generalized mixed Yule coalescent model have been proposed as means of increasing the rate of biodiversity description using single locus data. We applied these methods to explore the diversity within the Aglaopheniidae, a hydrozoan family with many species widely distributed across tropical and tem perate oceans. Our analyses revealed widespread cryptic diversity in this family, almost half of the morpho species presenting several independent evolutionary lineages, as well as support for cases of synonymy. For two common species of this family, Lytocarpia brevirostris and Macrorhynchia phoenicea, we compared the outputs to clustering analyses based on microsatellite data and to nuclear gene phylo genies. For L. brevirostris, microsatellite data were congruent with results of the species delimitation methods, revealing the existence of two cryptic species with Indo Pacific distribution. For M. phoenicea, all analyses confirmed the presence of two cryptic species within the South Western Indian Ocean. Our study suggests that the diversity of Aglaopheniidae might be much higher than assumed, likely related to low dispersal capacities. Sequence based species delimitation methods seem highly valuable to reveal cryptic diversity in hydrozoans; their application in an integrative framework will be very useful in describing the phyletic diversity of these organisms.
ISSN: 1055-7903

hal-01359407
https://hal.archives-ouvertes.fr/hal-01359407
https://hal.archives-ouvertes.fr/hal-01359407/document
https://hal.archives-ouvertes.fr/hal-01359407/file/Postaire-etal2016MolPhylEvol_sp_delim_hydraires_HAL.pdf
DOI : 10.1016/j.ympev.2016.08.013

Éditeur(s) : EDP Sciences
Résumé : Monitoring the abundance of green turtles (Chelonia mydas) is necessary to assess population trends and risks of collapse. This note presents a study aimed at comparing three techniques for the direct estimation of green turtle numbers in their foraging habitats (seagrass beds and reef flats). The experiment was carried out at Mayotte Island, Western Indian Ocean. The techniques involved were surveys by snorkel, and aerial surveys using a microlight aircraft and a paramotor. Each technique had shortcomings and advantages. While each technique provided estimations of turtle numbers only surveys by snorkel permitted identification of species and sex, whenever visibility and turtle behaviour permitted. Along the shorelines, and over foraging areas, the paramotor was found to be most suitable for direct estimations of turtle numbers. The major advantage of this technique lied in its capability to obtain a synoptic snapshot of turtle distribution over foraging areas. Linear surveys from a microlight aircraft are better suited to monitor foraging areas located further away from the shore.
Le suivi de l'abondance de tortues vertes (Chelonia mydas) est nécessaire pour évaluer l'évolution et éventuellement, le risque d'extinction des populations. L'objectif de cette expérience est de comparer trois techniques d'observation permettant l'évaluation directe de l'abondance totale de tortues vertes sur les aires d'alimentation (herbiers et platiers récifaux). L'étude a été conduite à l'île de Mayotte (ouest de l'océan Indien). Les techniques testées sont le comptage sous-marin et les comptages aériens à partir d'un ultra léger motorisé (ULM) et d'un paramoteur. Les limites de chaque technique utilisée ont été mises en évidence. L'abondance totale des tortues a été estimée par les trois techniques. Seuls, les comptages sous-marins ont permis de préciser des caractéristiques biologiques tels que l'espèce et le sexe, lorsque les conditions de visibilité et le comportement des tortues le permettaient. Le paramoteur paraît le plus adapté pour une estimation directe de l'abondance sur les aires d'alimentation situées à proximité immédiate de la côte. Cette technique permet de disposer d'un état de la répartition des tortues sur les aires d'alimentation à un moment donné. Pour les zones d'alimentation plus éloignées de la côte, l'usage de l'ULM est nécessaire pour réaliser les comptages à partir de transects linéaires.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005-04 , Vol. 18 , N. 2 , P. 193-198

Droits : EDP Sciences, IFREMER, IRD 2005
http://archimer.ifremer.fr/doc/2005/publication-432.pdf
DOI:10.1051/alr:2005021
http://archimer.ifremer.fr/doc/00000/432/

Éditeur(s) : HAL CCSD Magnolia Press
Résumé : International audience
Despite their importance in marine biodiversity, invertebrates are far less studied than vertebrates. Given the current globalbiodiversity crisis and insufficient taxonomic resources, sustained efforts need to be undertaken to assess species diversity,especially in the highly threatened ‘biodiversity hotspots’. Réunion is a young volcanic island lying in the Mascarene Islands(south-western Indian Ocean, SWIO), a marine biodiversity hotspot. A substantial sampling effort was conductedaround Réunion Island to document shallow water reef-associated ophiuroid (brittle-stars) diversity, a class recognised asthe most diverse among echinoderms. A total of 33 species were documented, increasing the known species richness ofthe island by 56%. Findings include 15 new records for Réunion, 11 for the Mascarene Islands and 8 for the Indian Ocean.The most diverse family was Ophiocomidae, a family of large, abundant and conspicuous tropical species. Even in thiswell studied family, a new species was revealed by this survey. Morphological variants together with DNA sequence variationswithin several species revealed cryptic species. We compared our results with the known fauna of other MascareneIslands and discuss biogeographic implications for the region.
ISSN: 1175-5326

hal-01327053
https://hal-univ-perp.archives-ouvertes.fr/hal-01327053
DOI : 10.11646/zootaxa.4098.2.4

Éditeur(s) : Amer Geophysical Union
Résumé : This study focuses on the improved estimation of mesoscale surface ocean circulation obtained by merging TOPEX/Poseidon (T/P) and ERS-1 and -2 altimeter measurements between October 1992 and May 1998. Once carefully intercalibrated and homogenized, these data are merged through an advanced global objective analysis method that allows us to correct for residual long wavelength errors and uses realistic correlation scales of ocean dynamics, The high-resolution (0.25 degrees x 0.25 degrees) merged T/P + ERS-1 and -2 sea level anomaly maps provide more homogeneous and reduced mapping errors than either individual data set and more realistic sea level and geostrophic velocity statistics than T/P data alone. Furthermore, the merged T/P + ERS-1 and -2 maps yield eddy kinetic energy (EKE) levels 30% higher than maps of T/P alone. They also permit realistic global estimates of east and north components of EKE and their seasonal variations, to study EKE sources better. A comparison of velocity statistics with World Ocean Circulation Experiment surface drifters in the North Atlantic shows very good agreement. Comparison with contemporary current meter data in various oceanic regimes also produces comparable levels of energy and similar ratios of northward and eastward energy, showing that the maps are suitable to studying anisotropy. The T/P + ERS zonal and meridional components of the mapped currents usually present comparable rms variability, even though the variability in the Atlantic is more isotropic than that in the Pacific, which exhibits strong zonal changes. The EKE map presents a very detailed description, presumably never before achieved at a global scale. Pronounced seasonal changes of the EKE are found in many regions, notably the northeastern Pacific, the northeastern and northwestern Atlantic, the tropical oceans, and the zonally extended bands centered near 20 degrees S in the Indian and western Pacific Oceans and at 20 degrees N in the northwestern nl Pacific.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2000-08 , Vol. 105 , N. C8 , P. 19477-19498

Droits : 2000 AGU
http://archimer.ifremer.fr/doc/00079/19033/16617.pdf
DOI:10.1029/2000JC900063
http://archimer.ifremer.fr/doc/00079/19033/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The Western Indian Ocean harbors one of theworld’s most diverse marine biota yet is threatened byexploitation with few conservation measures in place.Primary candidates for conservation in the region are theScattered Islands (Iles Eparses), a group of relativelypristine and uninhabited islands in the MozambiqueChannel. However, while optimal conservation strategiesdepend on the degree of population connectivity amongspatially isolated habitats, very few studies have beenconducted in the area. Here, we use highly variablemicrosatellite markers from two damselfishes (Amphiprionakallopisos and Dascyllus trimaculatus) with differing lifehistory traits [pelagic larval duration (PLD), adult habitat]to compare genetic structure and connectivity among theseislands using classic population structure indices as well asBayesian clustering methods. All classical fixation indexesFST, RST, G0ST, and Jost’s D show stronger genetic differentiationamong islands for A. akallopisos compared to D.trimaculatus, consistent with the former species’ shorterPLD and stronger adult site attachment, which may restrictlarval dispersal potential. In agreement with these results,the Bayesian analysis revealed clear genetic differentiationamong the islands in A. akallopisos, separating the southerngroup (Bassas da India and Europa) from the center(Juan de Nova) and northern (Iles Glorieuses) islands, butnot for D. trimaculatus. Local oceanographic patterns suchas eddies that occur along the Mozambique Channel appearto parallel the results reported for A. akallopisos, but suchfeatures seem to have little effect on the genetic differentiationof D. trimaculatus. The contrasting patterns ofgenetic differentiation between species within the samefamily highlight the importance of accounting for diverselife history traits when assessing community-wide connectivity,an increasingly common consideration in conservationplanning.
ISSN: 0722-4028

hal-01561992
https://hal-univ-perp.archives-ouvertes.fr/hal-01561992
DOI : 10.1007/s00338-016-1495-z

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : This paper develops a comparative overview of the development of Fish Aggregating Devices (or fads) by the tropical purse seine fisheries in various ocean areas (Atlantic, Indian, Western and Eastern Pacific Oceans). First, a comparative review of fishery statistics is developed. Recent catches on fads by purse seiners can be estimated at a level of one million tons yearly. This comparison allows to describe the fishing zones and catch trends over time, the species composition and size taken in the various fad fisheries. Skipjack tuna is the dominant species in most fad fisheries, but significant amounts of yellowfin and bigeye are also frequently taken under fads. The paper also presents an overview of various observer data concerning the by-catches of the various fisheries using fads. This comparison allows to estimate the total worldwide yearly by-catches at about 100,000 t, and their species composition in each ocean. The fad technology used in the various oceans by purse seiners is described. The recent use of fads by purse seiners has introduced major uncertainties in most stock assessments, because analyses are hampered by changes in the fishing effort in a fad fishery, by changes in fishing zones and in sizes caught. As a last point, the management of fads presently done or in view by the various tuna bodies are introduced. It appears that the present massive use of fads worldwide is perhaps an unsafe fishing mode, which could produce serious overfishing of many stocks. There is then a consensus that the use of fads needs to be controlled and limited to sustainable biological levels.

Droits : Ifremer
http://archimer.ifremer.fr/doc/00042/15278/12664.pdf
http://archimer.ifremer.fr/doc/00042/15278/