Éditeur(s) : HAL CCSD
Résumé : Water vapour is highly variable in the atmosphere with concentration reaching saturation in the tropics and with dry areas over elevated continental region. Good knowledge of the amount of integrated water vapour in the air is necessary to predict phase changes and in particular precipitation. Water vapour variability measurements are still insufficient with standard observing systems. Moreover accurate GPS antenna positioning is affected by the refractivity index variation in the troposphere. Consequently, vertical positioning component estimation is difficult. This variation is directly linked to distribution of variables such as pressure, temperature and humidity along the path between satellite and receiver. Here we study more specifically heavy rains et notably Cevenols events. This thesis work consists to check the GPS measurement validity to quantify water vapour in comparison with measurements from radiosoundings and meteorological model outputs. GPS observations and flux surface information have been analysed to see if water vapour quantification by GPS allowed characterising heavy rain events (cumulative rainfall amount greater than 150 mm). Then, we tested the GPS data assimilation impact on cumulative precipitation forecasts using the high resolution Meteo France AROME model (2.5 km). Finally the quality and the contribution of GPS measurement on sea is evaluated for water vapour measurement. This study has been realised in the framework of VAPIMED experiment.
La vapeur d'eau varie largement dans l'atmosphère avec des concentrations allant de la saturation dans les tropiques à des zones presque sèches au-dessus des zones continentales élevées. Une bonne connaissance du contenu en vapeur d'eau dans l'air est nécessaire pour la prévision des changements de phases, notamment les précipitations. La mesure de la variabilité de la vapeur d'eau est une lacune des systèmes d'observation. Par ailleurs, il est apparu que le positionnement précis des antennes GPS était affecté par la variation de l'indice de réfraction dans la troposphère, ce qui rend particulièrement difficile l'estimation de la composante verticale. Cette variation est directement liée à la distribution des variables pression, température et humidité sur les trajets satellite-récepteur. On s'intéresse ici à l'étude des précipitations intenses et notamment aux épisodes Cévenols. Ce travail de thèse consiste à vérifier la validité de la mesure GPS pour la quantification de la vapeur d'eau en la comparant avec des mesures issues de radiosondage et des sorties de modèle météorologique. On cherche à analyser si la quantification de vapeur d'eau par GPS permet de caractériser les forts événements précipitants (cumuls supérieurs à 150 mm) à l'aide d'observations conjointes sur les flux de surface. On étudie ensuite l'impact de l'assimilation de données GPS issues d'un réseau GPS dense sur la prévision des cumuls de pluies dans le modèle à hauterésolution (2.5 km) AROME de Météo France. Finalement on évalue la qualité et l'apport de la mesure de vapeur d'eau par GPS en mer dans le cadre d'une campagne de mesure VAPIMED).
https://tel.archives-ouvertes.fr/tel-00444081

Droits : info:eu-repo/semantics/OpenAccess
tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081/document
https://tel.archives-ouvertes.fr/tel-00444081/file/These_KBoniface.pdf

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé :  
Although the potential contribution to tropical tree species coexistence of niche differentiation along light gradients has receivedmuch attention, the degree to which species perform differentially along soil resource gradients remains unclear. To examine differential growth response to soil resources, we grew seedlings of nine tropical tree species at 6.0% of full sun for 12mo in a factorial design of two soil types (clay and white sand), two phosphate fertilization treatments (control and addition of 100mgP kg−1) and two watering treatments (field capacity and water limitation to one-third field capacity). Species differedmarkedly in biomass growth rate, but this hierarchy was almost completely conserved across all eight treatments. All species grew more slowly in sand than clay soils, and no species grew faster with phosphate additions. Only Eperua grandiflora and E. falcata showed significant growth increases in the absence of water limitation. Faster-growing species were characterized by high specific leaf area, high leaf allocation and high net assimilation rate but not lower root allocation. Slower-growing species exhibited greater plasticity in net assimilation rate, suggesting that tolerance of edaphic stress in these species is related more to stomatal control than to whole-plant carbon allocation. Although relative growth rate for biomass was correlatedwith both its physiological and morphological components, interspecific differences were best explained by differences in net assimilation rate across six of the eight treatments. A suite of traits including high assimilation and high specific leaf area maintains rapid growth rate of faster-growing species across awide gradient of soil resources, but the lack of plasticity they exhibit may compromise their survival in the poorest soil environments.
ISSN: 0266-4674

hal-01032086
https://hal.archives-ouvertes.fr/hal-01032086
DOI : 10.1017/S0266467406003439

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Jacupiranga Complex is one of several Meso-Cenozoic alkaline intrusive complexes along the margins of the intracratonic Paraná Basin in southern Brazil. The complex encompasses a wide range of rock-types, including dunites, wehrlites, clinopyroxenites, melteigites-ijolites, feldspar-bearing rocks (diorites, syenites, and monzonites), lamprophyres and apatite-rich carbonatites. While carbonatites have been extensively investigated over the last decades, little attention has been paid to the silicate rocks. This study presents new geochonological and geochemical data on the Jacupiranga Complex, with particular emphasis on the silicate lithotypes. 40Ar/39Ar ages for different lithotypes range from 133.7 ± 0.5 Ma to 131.4 ± 0.5 Ma, while monzonite zircon analyzed by SHRIMP yields a U-Pb concordia age of 134.9 ± 1.3 Ma. These ages indicate a narrow time frame for the Jacupiranga Complex emplacement, contemporaneous with the Paraná Magmatic Province. Most of the Jacupiranga rocks are SiO2-undersaturated, except for a quartz-normative monzonite. Based on geochemical compositions, the Jacupiranga silicate lithotypes may be separated into two magma-evolution trends: (1) a strongly silica-undersaturated series, comprising part of the clinopyroxenites and the ijolitic rocks, probably related to nephelinite melts and (2) a mildly silica-undersaturated series, related to basanite parental magmas and comprising the feldspar-bearing rocks, phonolites, lamprophyres, and part of the clinopyroxenites. Dunites and wehrlites are characterized by olivine compositionally restricted to the Fo83-84 interval and concentrations of CaO (0.13–0.54 wt%) and NiO (0.19–0.33 wt%) consistent with derivation by fractional crystallization, although it is not clear whether these rocks belong to the nephelinite or basanite series. Lamprophyre dikes within the complex are considered as good representatives of the basanite parental magma. Compositions of calculated melts in equilibrium with diopside cores from clinopyroxenites are quite similar to those of the lamprophyres, suggesting that at least a part of the clinopyroxenites is related to the basanite series. Some feldspar-bearing rocks (i.e. meladiorite and monzonite) show petrographic features and geochemical and isotope compositions indicative of crustal assimilation, although this may be relegated to a local process. Relatively high CaO/Al2O3 and La/Zr and low Ti/Eu ratios from the lamprophyres and calculated melts in equilibrium with cumulus clinopyroxene point to a lithospheric mantle metasomatized by CO2-rich fluids, suggesting vein-plus-wall-rock melting mechanisms. The chemical differences among those liquids are thought to reflect both variable contributions of melting resulting from veins and variable clinopyroxene/garnet proportions of the source.
ISSN: 0895-9811

hal-01583547
https://hal.archives-ouvertes.fr/hal-01583547
DOI : 10.1016/j.jsames.2017.05.009

Éditeur(s) : Elsevier Science Bv
Résumé : Here we present a new geochemical study of Lopevi volcano, one the most active volcanoes in the Vanuatu island arc. We focus on the temporally well-defined sequence of lava flows emitted since 1960, and for the first time, on pre-1960 volcanic products, including high-MgO basalts and felsic andesites, the most evolved lavas sampled so far on this island. This work reports the first Pb and Hf isotopic study of lavas from Lopevi island. These lavas display correlations between differentiation indexes such as SiO2 content and isotopic ratios. The felsic andesites extend the known correlations with both the least (Sr-Pb) and the most (Nd-Hf) radiogenic isotopic compositions on the island. Our results confirm that the rising magma interacted with the sub-arc crust. Assimilation-Fractional Crystallization (AFC) quantitative modeling of trace element ratios and isotopic compositions requires 1% and 10% of assimilated partial melts of a mafic oceanic crust to account for the pre- and post-1960 lavas, respectively. The post-1960 lavas differ from the former lavas emitted similar to 20 years earlier by enrichments in fluid mobile elements (K, Ba, Rb ... ), Th, and Light Rare Earth Elements (LREE). We ascribe these features to slight variations in the metasomatic agent added to the sub-arc mantle and ultimately derived from the subducted lithosphere. However, the contrasting time scales involved in subducted lithosphere dehydration and magma genesis, relative to the time elapsed between eruptions of the two lava series, suggest that two different portions of mantle which have undergone slightly different metasomatism, gave birth to the Lopevi lavas. These distinct magmas are still present beneath the volcano.
Journal Of Volcanology And Geothermal Research (0377-0273) (Elsevier Science Bv), 2013-08 , Vol. 264 , P. 72-84

Droits : 2013 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00167/27801/26223.pdf
DOI:10.1016/j.jvolgeores.2013.07.005
http://archimer.ifremer.fr/doc/00167/27801/

Éditeur(s) : HAL CCSD
Résumé :   Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Links between architectural stages of development (ASD), photosynthetic capacities and leaf characteristics in Tachigali melinonii (Caesalpiniaceae) were investigated in the tropical forest of French Guiana. Three ASD were sampled under three light conditions to elucidate the impact of ASD- and light-related changes on photosynthetic functional traits. Photosynthetic parameters (maximum rate in RubisCO carboxylation (Vcmax) and maximum rate of electron transport (Jmax) were estimated by adjusting a biochemical model (Farquhar et al., 1980) to response curves of CO2 assimilation rate to intercellular CO2 concentration, under saturated light. In addition, N and C foliar concentrations were analysed and N allocations to the carboxylation and bioenergetic processus of photosynthesis were calculated using the model of Niinemets and Tenhunen (1997). The variations in ecophysiological parameters observed were due to leaf anatomical and structural changes instead of changes in photosynthetic components, suggesting adjustments to light conditions. Tachigali melinonii thus appears to display morphological and anatomical plasticity at different ASDs and under different light conditions.
Une espèce forestière de Guyane Française, Tachigali melinonii (Caesalipiniaceae), a été choisie afin de regarder la variation des traits fonctionnels relatifs à la photosynthèse en fonction de la disponibilité en lumière et en fonction de son stade de développement architectural. Du fait du tempérament de l'espèce vis-à-vis de la lumière de type «struggling gambler» (ombrage nécessaire aux jeunes stades puis développement en pleine lumière), trois stades clefs de développement parmi la séquence de différenciation de l'espèce ainsi que trois environnements lumineux ont été choisis. Les capacités photosynthétiques foliaires ont été estimées à partir de l'ajustement de paramètres du modèle biochimique de photosynthèse foliaire (Farquhar et al. 1980) sur des courbes de réponses de l'assimilation de CO² (A) à des concentrations intracellulaires en CO² (Ci) croissantes, en condition de lumière saturante. La vitesse maximale de carboxylation Vcmax et le flux maximal d'électrons photosynthétiques Jmax ont ainsi été estimés et ensuite reliés aux caractéristiques structurales foliaires, notamment la concentration en azote, en carbone ainsi qu'avec la densité et l’épaisseur. Les fractions d'azote allouées aux processus photosynthétiques de carboxylation et de bioénergétique ont été calculées. Des variations, dues à un effet du stade de développement sur les paramètres étudiés ainsi qu’à un effet de la quantité de lumière disponible, ont été constatées. Ces variations sont surtout liées à des ajustements anatomiques et structuraux foliaires et non à des modifications de l’appareil photosynthétique. Tachigali melinonii semble donc modifier ses caractéristiques structurales foliaires en fonction de son stade de développement, ce qui suppose un contrôle ontogénique partiel, et en fonction de la disponibilité en lumière.
https://hal.archives-ouvertes.fr/hal-01189520

hal-01189520
https://hal.archives-ouvertes.fr/hal-01189520
PRODINRA : 44951

Éditeur(s) : Université de la Méditerranée
Résumé : This study was supported by the Atlantic working site of the « Programme National d’Océanographie Côtière » (PNOC, PNEC since 1999). The objectives were (1) to check the existence and to understand the mechanisms of winter phytoplankton blooms in the bay of Biscay influenced by the Gironde waters (2) to determine the limiting nutrient of the primary production associated to these blooms and to follow the seasonal evolution of the limiting nutrient, (3) to understand the consequences of this early limitation on the structuration of algal populations in spring. Since phosphorus was supposed to be the major limiting nutrient of algal growth in the Gironde plume, the different forms of the phosphorus cycle as well as the bacterial compartment, central in this cycle, were also studied in term of stocks and fluxes. The sampling strategy consisted in three cruises in 1998, BIOMET 2 (January), BIOMET 3 (beginning of March), PEGASE (June) and six cruises in 1999, PLAGIA 1 to 6 (late February, late April, late May, late June, the middle of July and the beginning of October). Winter algal blooms, essentially diatoms, were actually observed both in the typical waters of the plume (S < 34.5) and at the limit of the plume and adjacent atlantic oceanic waters (S > 34.5) in the successives years 1998 and 1999. These blooms were initiated by the occurrence of short anticyclonic windows in winter, acting on physical processes which dominate the evolution and characteristics of the Gironde plume (runoff, wind direction and speed) and, ultimately, on the evolution of the depth of the mixed layer (haline stratification) and available light (decrease of turbidity). The algal growth was actually phosphorus limited in the typical waters of the plume at the end of the winter bloom, in spring and became nitrogen and phosphorus limited in summer until the first autumn gales restored the nutritive balance. More oceanic waters (S > 34.5) were probably N+P limited from the end of the winter-the beginning of spring to autumn. Phosphorus limitation of winter blooms, associated with girondine unbalanced nutritive supplies (high NO3/PO4 ratios) favoured the development of small cells at the beginning of spring and the later presence of spring blooms (June 1998, late May 1999) composed of pico and nanophytoplankton (nanoflagellates), instead of typical diatom spring blooms for temperate waters. This size reduction of algal communities is strongthened by the competition between phytoplankton and bacteria for the phosphate uptake, bacteria being more competitives at low concentrations and being phosphorus limited sometimes in spring. The decreasing size of algal cells probably acted on the structuration of the whole food web. The study of the different forms of phosphorus displayed the importance of the Dissolved Organic Phosphorus (DOP) pool. The potential biological lability and the capacity of algae and bacteria to use the DOP in spring when phosphate are undetectable was shown by the very high specific activities of alkaline phosphatases and the very rapid cycling of phosphate monoesters. According to the few estimations of actual phosphatasic activity and phosphate assimilation fluxes, the hydrolysis of DOP associated with the coupled assimilation of liberated phosphate would represent 91 to 99 % of the phosphorus fluxes into algal and bacterial cells when phosphate were exhausted. In such conditions DOP could satisfy most of microorganisms phosphorus needs.
Cette thèse s’inscrit dans le cadre du Chantier Atlantique du Programme National d’Océanographie Côtière (PNOC, PNEC depuis 1999). Les objectifs de ce travail étaient (1) de vérifier l’existence et comprendre le déterminisme de blooms phytoplanctoniques hivernaux dans les eaux du Golfe de Gascogne influencées par la Gironde, (2) de préciser le facteur limitant de la production primaire associée à ces blooms et de suivre l’évolution saisonnière de ce facteur et (3) de comprendre les conséquences de cette limitation précoce sur la structuration des populations algales au printemps. Le phosphore étant supposé être le principal élément limitant de la croissance algale dans le panache de la Gironde, les différentes composantes du cycle du phosphore ainsi que le compartiment bactérien, central dans ce cycle, ont été étudiés en terme de stock et de flux. La stratégie d’échantillonnage a consisté en trois campagnes en 1998, BIOMET 2 (janvier), BIOMET 3 (début mars), PEGASE (juin) et six campagnes en 1999, PLAGIA 1 à 6 (fin février, fin avril, fin mai, fin juin, mi-juillet et début octobre). Des efflorescences algales hivernales, constituées essentiellement de diatomées, ont effectivement été observées de façon récurrente dans les eaux typiques du panache (S < 34,5) et à la limite du panache et des eaux océaniques atlantiques adjacentes (S > 34,5) au cours des deux années successives 1998 et 1999. Ces blooms ont été engendrés par l’apparition de courtes fenêtres anticycloniques en période hivernale, ces fenêtres interférant sur les processus physiques qui prévalent sur l’évolution et les caractéristiques du panache de la Gironde (régime des débits, orientation et force du vent) et, de façon ultime, sur l’évolution de la profondeur de la couche de mélange (halostratification) et la disponibilité en lumière (diminution de la turbidité). La croissance algale était limitée par le phosphore dans les eaux typiques du panache à la fin du bloom hivernal, au printemps et devint limitée en azote et en phosphore en période estivale et ceci jusqu’à ce que les premières tempêtes automnales rétablissent l’équilibre nutritif des eaux. Les eaux à caractère plus océanique (S > 34,5) étaient plus probablement limitées par N+P dès la fin de l’hiverdébut du printemps et ce jusqu’à l’automne. La limitation des blooms hivernaux par le phosphore, associée à des apports nutritifs girondins déséquilibrés en phosphate (rapports NO3/PO4 élevés) a favorisé le développement de cellules de petite taille au début du printemps et la présence ultérieure de blooms printaniers (juin 1998, fin mai 1999) composés de pico- et de nanophytoplancton (nanoflagellés), blooms « atypiques » pour des eaux tempérées à cette saison. Cette structuration des communautés algales est renforcée par la compétition entre le phytoplancton et les bactéries pour l’acquisition du phosphate, les bactéries étant plus compétitives aux faibles teneurs en phosphate et pouvant être elles-mêmes limitées par le phosphore à certains moments du printemps. La diminution de taille des cellules algales a probablement une incidence sur la structure de taille de l’ensemble du réseau trophique. L’étude des différentes composantes du phosphore montre l’importance du pool de Phosphore Organique Dissous (POD), sa labilité biologique potentielle et la capacité des communautés algales et bactériennes à utiliser ce pool au printemps quand les phosphates sont indétectables (activités spécifiques des phosphatases alcalines très élevées, recyclage très rapide des monoesters de phosphate). Au vu des quelques estimations de l’activité phosphatasique réelle et des flux d’assimilation de phosphate, l’hydrolyse du POD associée à l’assimilation couplée du phosphate libéré représenterait 91 à 99 % des flux de phosphore vers les cellules algales et bactériennes, quand les phosphates du milieu sont déficients. Dans de telles conditions, le POD pourrait satisfaire l’essentiel des besoins des microorganismes en phosphore.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00013/12463/9298.pdf
http://archimer.ifremer.fr/doc/00013/12463/

Éditeur(s) : Actes Symposium, Bordeaux, France, 8-14 septembre 1981, pp 389-395
Résumé : Estimations of algal growth potential (AGP) of oyster-pond waters have been made by the use of bioassays and nutrient analysis. Data obtained demonstrated that nitrogen is the nutrient Iimiting AGP and that an important part of algal biomass is supported by organic nutrients. Such an uptake ranges from 0.6 to 30.7 µg-at.I-1 nitrogen ; which represents up to six times the total amount of inorganic nitrogen taken up. U.V oxydation and subsequent chemical analysis shown DON concentrations in oyster-pond waters varied with oyster presence or absence: values recorded were 10-40 µg-at N.I-1 when oysters were not present, and up to 50-60 µg-at N.I-1 when oysters were covering the bottom of the pond. The oyster Crassostrea gigas was demonstrated to excrete 77-93 % DON, versus 10-33 % N-NH4; urea excretion often represented three folds the NH4 excretion. The capability to take up organic nutrients varies with algal species ; the diatom Navicula ostrearia appeared to be the most efficient one.
L'utilisation de tests biologiques dans l'étude de la fertilité des eaux de claires ainsi que l'analyse chimique des réserves en sels nutritifs des mêmes eaux montrent qu'une part importante de la biomasse micro-algale peut être produite dans ces bassins, par assimilation par les cellules de substances organiques dissoutes. Ainsi, pour l'azote, des estimations indirectes aboutissent à des quantités de cet élément assimilé sous forme organique variant entre 0,6 et 30,7 µg-at.I-1 selon les modes d'évaluation, les espèces et l'origine des eaux, c'est-à-dire jusqu'à six fois les quantités d'ions minéraux prélevés par les algues. Ces valeurs sont tout à fait en concordance avec les teneurs en azote organique dissous effectivement présentes dans les eaux de claires: entre 10 et 40 µg-at.I-1 et jusqu'à 50 à 60 µg-at.I-1 dans les bassins où des huîtres sont immergées. On ne peut donc exclure une relation entre ces fortes valeurs en azote organique dissous et les huîtres. D'ailleurs, il est démontré que l'huître Crassostrea gigas peut excréter 77 à 93 % de rejets azotés sous forme organique, l'ammoniaque n'en représentant que 10 à 33 % et la quantité d'urée excrétée atteignant jusqu'à trois fois celle d'ammoniaque. L'utilisation de ces formes organiques de l'azote par les algues des claires varie avec les espèces; Navicula ostrearia semble être la mieux adaptée à ce type d'assimilation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1981/acte-2946.pdf
http://archimer.ifremer.fr/doc/00000/2946/

Résumé : Bacteriological study of abyssal sediments: During the Demeraby mission of the N/O Jean Charcot in the western Atlantic Ocean, a study of the microflora of the digestive tracts of echinoderms (Holothuroidea of various genera, Asteroidea, Echinoidea) was compared with that of the surrounding sediment. The bacterial concentration observed in the digestive tracts of all the animals studied is higher than that in the surrounding sediments. The largest numbers were always found in the most anterior part of the digestive tracts of the holothurians. In some cases, the increase is considerable (7.10 versus 5.2. 10 cells per millilitre): It indicates a proliferation of bacterial cells in the anterior part of the digestive tract. As the sediment moves through the digestive tract, the bacterial level progressively decreases. In the most posterior part, the concentration is, however, always clearly greater than that in the surrounding sediment. In the case of the holothurian of the genus Deima, analysis according to the Adamsonian principle of comparison shows that the microflora isolated from the various parts of the digestive tract is composed of taxonomic groups showing little resemblance to those isolated from the sediment. In the case of the holothurian of the genus Pseudostichopus, no specialisation of the microflora from digestive tract contents appears with respect to that of the ingested sediment. Examination of metabolic activities suggests a juxtaposition of two types of communities: Free sediment - sediment in transit that complement one other in their enzymatic and nutritional behaviour Indeed, the strains of free sediment seem to be rather suitable for hydrolysing and using carbohydrates, while those of enteric communities prefer the hydrolysis of lipids and proteins and the assimilation of fatty acids, dicarboxylic acids, hydroxylic acids and certain amino acids. Moreover, the enteric microflorae possess a greater nutritional versatility that, linked with its total numbers, has a sizeable catabolic potential. .../... -2- Measurements of heterotrophic activity done by means of 14 C glucose tracers make it possible to show that the metabolic activities of the bacterial communities of superficial abyssal sediments vary according to zones. In the Amazon Cone, a clear glucose mineralization gradient over a distance of a few kilometres can be observed. In the abyssal plain of Demerara heterotrophic activities are slowed in relation to those of the superficial sediments of the Cone of the Amazon, even though the bacterial numbers and the depths are of the same order of magnitude in the two zones. The abundant microflorae associated with the various divisions of digestive tract contents of the Deima abyssal holothurian manifest little metabolic activity as regards the glucose. However, the bacterial communities of Pseudostichopus and Psychropotes manifest very strong heterotrophic activities, increasing from the oesophagus towards the cloaca. Current results are too fragmentary to allow us to observe possible physiological specialisation of enteric bacterial communities enabling the facilitation of digestion processes in the host. Conclusion: In the abyssal environment, characterised by poorly developed bacterial communities, microflorae associated with the digestive tract contents of echinoderms have considerably greater cellular concentrations. By means of their enzymatic equipment, these enteric communities, which complement those of the free microflorae of superficial sediments, can participate in the transformation of organic matter in the abyssal area. Study of the dynamics of microbial communities and their heterotrophic activities in shellfish farms: From experiments done on the water in the Arcachon basin, trials to quantify and describe the reactivity potential of bacterial communities were performed. Bacterial communities were defined by direct counts, counts after setting them up for cultivation, structure and diversity of these communities, dosage of AMP, ADP, ATP. Two opposite ecological conditions were considered: Autumn conditions (high temperature) and a winter conditions (low temperature). Tubs of sea water of 6 and 60 litres were enriched either with ammonium chloride or a mixture of amino acids, at about 500 uAtg N.L. The experiments lasted 24 hours, with sampling every 3 hours. The autumn community reacted rapidly (6 hours), the response to the enrichment in organic nitrogen being the highest. The structure of the community has unstable immature stages. On the contrary, during the winter experiment, no response could be perceived. This may mean that the latency phase is greater than 24 hours. The structure of this community has mature stages. In conclusion, bacterial communities react in the same way as macroscopic communities. Stable communities are diversified and correspond to mature stages of the ecosystem; the immature stages are unstable and less diversified. This type of experiment has made it possible to bring to light the rapidity of response of bacterial populations, and can be used to define the stability of a bacterial community in a precise biotope.
ETUDE BACTERIOLOGIQUE DES SEDIMENTS ABYSSAUX RESUME Au cours de la mission DEMERABY du n/o Jean CHARCOT en atlantique occidental , une étude de la microflore des tractus digestifs d'Echinodermes (Holothurides de différents genres, Astérides, Echinides) a été comparée à celle du sédiment environnant. La concentration bactérienne observée dans les tractus digestifs de tous les animaux étudiés est supérieure à celle des sédiments environnants. Les effectifs les plus importants sont toujours observés dans la partie la plus antérieure des tractus digestifs des holothuries. Dans certains cas, l'accroissement est considérable (7.10 contre 5,2. 10 cellules/ml) : il indique une prolifération des cellules bactériennes dans la partie antérieure du tractus digestif. Au.cours de la progression du sédiment dans le tractus digestif, la charge bactérienne décroit progressivement. Dans la partie la plus postérieure, la concentration est cependant toujours nettement supérieure à celle du sédiment environnant-. Dans le cas d'une holothurie du genre Deima, l'analyse selon le principe adansonien de comparaison montre que la microflore isolée des différentes parties du tractus digestif est constituée de groupes taxonomiques présentant peu de ressemblance avec ceux isolés du sédiment. Dans le cas d'une holothurie du genre Pseudostichopus il n'apparait pas de spécialisation de la microflore du contenu du tractus digestif par rapport à celle du sédiment ingéré. ¿ ¿ . L'étude des activités métaboliques suggère une juxtaposition de deux types de communautés : sédiment libre-sédiment en transit qui se complètent dans leur comportement enzymatique et nutritionnel. En effet les souches du sédiment libre semblent être plutôt aptes à hydrolyser et à utiliser les glucides, tandis que celles des communautés entériques portent leur préférence sur l'hydrolyse des lipides et protéines et 1'assimilation des acides gras, acides dicarboxyl iques, hydro'xy-acides et certains acides aminés. D'autre part les microflores entériques possèdent une versatilité nutritionnelle plus importante qui, liée à leurs effectifs, offre une potentialité catabolique non négligeable. .../... -2- Les mesures d'activité hétérotrophe effectuées au moyen de traceurs glucose 14 C permettent de montrer que les activités métaboliques des communautés bactériennes des sédiments abyssaux superficiels varient selon les zones. Dans le Cone de l'Amazone on observe un net gradient de minéralisation du glucose sur une distance de quelques kilomètres. Dans la plaine abyssale de Demerara les activités hétérotrophessont ralenties par rapport à celles des sédiments superficiels du Cone de l'Amazone, bien que les effectifs bactériens et les profondeurs soient du même ordre de grandeur dans ces deux zones. Les abondantes microflores associées aux différentes fractions du contenu du tractus digestif de l'holothurie abyssale Deima ne manifestent que peu d'activités métaboliques vis à vis du glucose. Par contre les communautés . bactériennes de Pseudostichopus et P syahropotes manifestent des activités hétérotrophes très fortes, croissant de 1'oesophage vers le cloaque. Les résultats actuels sont trop fragmentaires pour permettre d'observer une éventuelle spécialisation physiologique des communautés bactériennes entëriques permettant de faciliter les processus de digestion chez l'hôte. Conclusion: dans le milieu abyssal, caractérisé par des communautés bactériennes faiblement développées, les microflores associées aux contenus de tractus digestif des Echinodermes présentent des concentrations cellulaires considérablement plus importantes. Par leurs équipements enzymâtiques ces communautés entëriques complémentaires de ceux des microflores libres des sédiments superficiels, peuvent participer à la transformation des matières organiques du domaine abyssal. ETUDE DE LA DYNAMIQUE DES COMMUNAUTES MICROBIENNES ET DE LEURS ACTIVITES HETEROTROPHES DANS LES PARCS CONCHYLICOLES RESUME A partir d'expérimentations effectuées sur l'eau du bassin d'Arcachon, des essais de quantification et qualification du potentiel de réactivité des communautés bactériennes ont été effectuées. Les communautés bactériennes ont été définies par comptage directs, comptages après mise en culture, structure et diversité de ces communautés, dosage des AMP, ADP, ATP. Deux situations écologiques opposées ont étées considérées . Une situation automnale (température élevée) et une situation hivernale (température faible). Des bacs d'eau de mer de 6 et 60 litres ont été enrichis , soit avec du chlorure d'ammonium, soit avec un mélange d'acides aminés, à environ 500 uAtg N.l" . Les expériences ont duré 24 heures, avec des prélèvements toutes les 3 heures. La communauté automnale réagit rapidement (6 heures), la ' réponse à l'enrichissement en azote organique étant la plus importante. La structure de la communauté présente des stades immatures instables. Au contraire, au cours de l'expérimentation hivernale, aucune réponse n'a pu être perçue. Ceci peut signifier que la phase de latence est supérieure à 24 heures. La structure . de cette communauté présente des stades matures. En Conclusion, les communautés bactériennes réagissent de la même façon que les communautés macroscopiques. Les communautés stables sont diversifiées et correspondent à des stades matures de l'écosystème, les stades immatures sont instables et moins diversifiés. Ce type d'expérience a permi de mettre en évidence la rapidité de réponse des populations bactériennes, et peut être utilisé pour définir la stabilité d'une communauté bactérienne dans un biotope précis.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1981/rapport-1926.pdf
http://archimer.ifremer.fr/doc/00000/1926/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Functional aspects of biodiversity were investigated in a lowland tropical rainforest in French Guyana (5°2'N, annual precipitation 2200 mm). We assessed leaf '15N as a presumptive indicator of symbiotic N2 fixation, and leaf and wood cellulose '13C as an indicator of leaf intrinsic water-use efficiency (CO2 assimilation rate/leaf conductance for water vapour) in dominant trees of 21 species selected for their representativeness in the forest cover, their ecological strategy (pioneers or late successional stage species, shade tolerance) or their potential ability for N2 fixation. Similar measurements were made in trees of native species growing in a nearby plantation after severe perturbation (clear cutting, mechanical soil disturbance). Bulk soil '15N was spatially quite uniform in the forest (range 3-5‰), whereas average leaf '15N ranged from m0.3‰ to 3.5‰ in the different species. Three species only, Diplotropis purpurea, Recordoxylon speciosum (Fabaceae), and Sclerolobium melinonii (Caesalpiniaceae), had root bacterial nodules, which was also associated with leaf N concentrations higher than 20 mg gm1. Although nodulated trees displayed significantly lower leaf '15N values than non-nodulated trees, leaf '15N did not prove a straightforward indicator of symbiotic fixation, since there was a clear overlap of '15N values for nodulated and non-nodulated species at the lower end of the '15N range. Perturbation did not markedly affect the difference '15Nsoil m '15Nleaf, and thus the isotopic data provide no evidence of an alteration in the different N acquisition patterns. Extremely large interspecific differences in sunlit leaf '13C were observed in the forest (average values from m31.4 to m26.7‰), corresponding to intrinsic water-use efficiencies (ratio CO2 assimilation rate/leaf conductance for water vapour) varying over a threefold range. Wood cellulose '13C was positively related to total leaf '13C, the former values being 2-3‰ higher than the latter ones. Leaf '13C was not related to leaf '15N at either intraspecific or interspecific levels. '13C of sunlit leaves was highest in shade hemitolerant emergent species and was lower in heliophilic, but also in shade-tolerant species. For a given species, leaf '13C did not differ between the pristine forest and the disturbed plantation conditions. Our results are not in accord with the concept of existence of functional types of species characterized by common suites of traits underlying niche differentiation; rather, they support the hypothesis that each trait leads to a separate grouping of species.
ISSN: 0029-8549

hal-01032378
https://hal.archives-ouvertes.fr/hal-01032378
DOI : 10.1007/s004420050593

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : We tested the response of seedlings of Dicorynia guianensis, a major timber tree species of French Guiana, to mycorrhizal symbiosis and water limitation in a semi-controlled experiment under natural light conditions. Under well-watered conditions, mycorrhizal colonization resulted in an increase of net photosynthesis, growth and phosphorus uptake. When submitted to water stress, no growth reduction of mycorrhizal seedlings was observed. Mycorrhizal seedlings were more sensitive to drought than non-mycorrhizal ones in terms of carbon assimilation, but not with regard to stomatal closure. In contrast to previous studies on temperate tree seedlings, this result precludes a mycorrhizal effect on the hydraulic properties of this species. Furthermore, our results suggest that below a specific threshold of soil moisture, carbon assimilation of D. guianensis seedlings was decreased by the mycorrhizal symbiosis. This is probably related to the competition between the plant and its host fungus for carbon allocation under low light intensity, even though it did not seem to have a significant effect on mortality in our experiment.
ISSN: 0266-4674

hal-01031901
https://hal.archives-ouvertes.fr/hal-01031901
DOI : 10.1017/S0266467405002348

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La Martinique possède 55 km2 de récifs coralliens, 50 d’herbiers et 20 de mangroves. Ces trois écosystèmes produisent des biens et services dont la valeur est estimée à quelque 250 millions d’euros par an. Près de 60 % de cette valeur est issue des usages directs liés aux activités récréatives (plongée, excursion, récréation balnéaire) induites pour l’essentiel par le tourisme et celles liées à la pêche (professionnelle et de plaisancière). Les services écosystémiques (assimilés aux usages indirects) tels que la protection des côtes, l’absorption/séquestration de carbone, la production de biomasse de poissons et l’épuration de l’eau sont conséquents puisque leur valeur annuelle s’élève à 94 millions € soit 38 % de la valeur totale. La valeur de ce qui a trait au non-usage des récifs, herbiers et mangroves (lié à la volonté de transmettre un patrimoine écologique pour l’essentiel ou encore à la satisfaction de savoir que les récifs sont en bon état) se traduit par une création de valeur de l’ordre de 10 millions €/an. Les herbiers et les mangroves contribuent le plus (par km2) à la création de valeur (respectivement 2,16 millions €/km2, 1,87 million €/km2 contre 1,78 million €/km2 pour les récifs). Ils doivent donc bénéficier de mesures de protection et surtout de valorisation au même titre que les récifs coralliens qui font déjà l’objet d’une attention particulière.
Martinique possesses 55 km2 of coral reefs, 50 of sea grass and 20 of mangroves. These three ecosystems produce services for a value estimated at 250 millions € per year. About 60% of this value originates from directs uses such as recreational activities (diving, excursions, beach activities, etc.) induce by tourism and fishery. Ecosystem services (indirect uses) such as coastal protection, carbon sequestration, biomass production and water purification are significant since their sum value reaches annually 94 millions € (38% of the total economic value). Non-use value links to the improvement of the health of coastal ecosystem is estimated to 10 millions € per year. At the ecosystem level, sea grass and mangrove contribute the more (per km2) to the wealth creation (respectively 2,16 millions €/km2, 1,87 million €/km2 against 1,78 million €/km2 for the reefs). They need therefore to benefit from protection and management measures in the same magnitude than the reefs already received.
Martinique

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.4410
http://journals.openedition.org/etudescaribeennes/4410

Éditeur(s) : HAL CCSD
Résumé : This PhD work is based on field, petrographic, and geochemical observations of rocks originated at the base of the sheeted dike complex, in the Oman ophiolite and at IODP Site 1256, coupled with an experimental study. It provides new constrains on processes that occur at the magma / hydrothermal system transition in oceanic crust formed at fast spreading ridges. The base of the sheeted dike complex is truncated by intrusive isotropic gabbros, and therefore reheated and recrystallized to the "granoblastic dikes" under temperatures up to 1030°C. Xenoliths of granoblastic microgabbros and microgabbronorites derived from the granoblastic dikes are commonly observed in the about 100 meters thick horizon of isotropic gabbro that underlies the sheeted dike complex. These features can be explained by upward migrations of the melt lens that is present at fast spreading centers. The occurrence of several assimilation features (xenoliths and granoblastic patches) in the isotropic gabbro horizon supports the hypothesis that this horizon represents the fossilization of the upper melt lens. The experimental study was designed to simulate experimentally the effect of partial melting of hydrothermally altered sheeted dikes. The results show that melting starts at 850°C, confirm the residual origin of granoblastic dikes and xenoliths, and attest to the anatectic origin of the oceanic plagiogranites that are commonly present close to the base of the sheeted dike complex. The major and trace element composition of the experimental anatectic melt that represents the main contaminant for primitive MORBs at fast spreading ridges has been determined. The upper axial melt lens at fast spreading mid-ocean ridges is herein described as a dynamic system that can migrate vertically, and which fossilizes when moving off-axis.
Ce travail de thèse est basé sur des observations de terrain, sur une étude pétrographique et géochimique des roches formées à la base du complexe filonien dans l'ophiolite d'Oman et au niveau du Site IODP 1256, ainsi que sur une étude expérimentale. De nouvelles contraintes sont apportées sur les processus se produisant à la transition magma / système hydrothermal dans la croute océanique formée au niveau des dorsales à expansion rapide. L'intrusion de gabbros isotropes dans la base du complexe filonien a provoqué son réchauffement et sa recrystallization en « dikes granoblastiques » jusqu'à des températures de 1030°C. Des xénolites de microgabbro à orthopyroxene dérivées des dikes granoblastiques sont souvent observées dans le niveau de gabbros isotropes épais de 100 mètres environ qui est présent à la base du complexe filonien. Ces différentes caractéristiques sont à relier à des migrations verticales vers le haut du sommet de la lentille magmatique supérieure qui est observée aux dorsales rapides. Les nombreuses évidences d'assimilation (xénolites et patchs granoblastiques) dans le niveau des gabbros isotropes appuient l'hypothèse que ce niveau représente la fossilisation de la lentille magmatique supérieure. L'étude expérimentale a consisté à tester l'effet de la fusion partielle du complexe filonien préalablement hydrothermalisé. Les résultats montrent que la fusion commence à 850°C, confirment l'origine résiduelle des dikes granoblastiques et des xénolites associées, et attestent de l'origine anatectique des plagiogranites océaniques qui sont couramment observés à proximité de la base du complexe filonien. La composition en éléments majeurs et traces du liquide anatectique a été déterminée. Ce liquide représente le principal contaminant pour les MORBs primitifs émis au niveau des dorsales rapides. La lentille magmatique supérieure présente au niveau des dorsales médio-océaniques à expansion rapide est ici décrite comme un système dynamique qui peut migrer verticalement, et qui est fossilisée lorsqu'elle se déplace hors axe.
https://tel.archives-ouvertes.fr/tel-00448699

tel-00448699
https://tel.archives-ouvertes.fr/tel-00448699
https://tel.archives-ouvertes.fr/tel-00448699/document
https://tel.archives-ouvertes.fr/tel-00448699/file/France_2009_PhD.pdf

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The transition between the small melt lens observed on top of fast spreading ridge magma chambers and the overlying sheeted dike complex marks the interface between magma and the hydrothermal convective system. It is therefore critical to our understanding of fast spreading ridge accretion processes. We present maps of two areas of the Oman ophiolite where this transition zone is observed as continuous outcrops. Our observations, which include the base of the sheeted dike being crosscut by gabbros, are consistent with episodic dike injections in a steady state model but also suggest that the root of these dikes is commonly erased by vertical movements of the top of the melt lens. Dike assimilation is a possible mechanism for incorporating hydrated phases, which result from hydrothermal alteration, to the melt lens during upward migrations of its upper boundary. Upward migrations are also responsible for a granoblastic overprint of the root of the dikes that is also observed in the stoped diabase xenoliths. This granoblastic overprint attests to reheating of previously hydrothermally altered lithologies which can even trigger hydrous partial melting due to the lowering of the solidus of mafic lithologies by the presence of a water activity. Clinopyroxenes present in these granoblastic lithologies are typically low in Ti and Al content, thus strongly contrasting with corresponding magmatic clinopyroxene. This may attest to the recrystallization of clinopyroxenes after amphiboles under the peculiar conditions present at the root zone of the sheeted dike complex. Downward migrations of the top of the melt lens result in the crystallization of the isotropic gabbros at its roof, which represent the partly fossilized melt lens. Melt lens fossilization eventually occurs when magma supply is stopped or at the melt lens margins where the thermal conditions become cooler. Melt lens migration, recrystallization of hydrothermally altered sheeted dikes during reheating stages, and assimilation processes observed in the Oman ophiolite are consistent with the observations made in IODP Hole 1256D. We propose a general dynamic model in which the melt lens at fast spreading ridges undergoes upward and downward movements as a result of either eruption/replenishment stages or variations in the hydrothermal/magmatic fluxes.
ISSN: 1525-2027

hal-00445249
https://hal.archives-ouvertes.fr/hal-00445249
DOI : 10.1029/2009GC002652

Éditeur(s) : Gauthier-Villars
Résumé : We present results of sequential data assimilation of altimetric data in a linear tropical Atlantic model, using an analysis technique that we have developed. We use sea level anomaly fields obtained from altimetric data of the satellite Geosat. Despite the weak amplitudes of the anomaly fields, we obtain marked improvements of the model simulations due to assimilations. Thus, we show that altimetric data may be very useful for improving model simulations when adapted assimilation techniques are applied.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1992 , Vol. 15 , N. 5 , P. 525-536

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00101/21179/18796.pdf
http://archimer.ifremer.fr/doc/00101/21179/

Éditeur(s) : HAL CCSD Society for Range Management
Résumé : Grasslands and agroecosystems occupy one-third of the terrestrial area, but their contribution to the global carbon cycle remains uncertain. We used a set of 316 site-years of CO(2) exchange measurements to quantify gross primary productivity, respiration, and light-response parameters of grasslands, shrublands/savanna, wetlands, and cropland ecosystems worldwide. We analyzed data from 72 global flux-tower sites partitioned into gross photosynthesis and ecosystem respiration with the use of the light-response method (Gilmanov, T. G., D. A. Johnson, and N. Z. Saliendra. 2003. Growing season CO(2) fluxes in a sagebrushsteppe ecosystem in Idaho: Bowen ratio/energy balance measurements and modeling. Basic and Applied Ecology 4:167-183) from the RANGEFLUX and WORLDGRASSAGRIFLUX data sets supplemented by 46 sites from the FLUXNET La Thuile data set partitioned with the use of the temperature-response method (Reichstein, M., E. Falge, D. Baldocchi, D. Papale, R. Valentini, M. Aubinet, P. Berbigier, C. Bernhofer, N. Buchmann, M. Falk, T. Gilmanov, A. Granier, T. Grunwald, K. Havrankova, D. Janous, A. Knohl, T. Laurela, A. Lohila, D. Loustau, G. Matteucci, T. Meyers, F. Miglietta, J.M. Ourcival, D. Perrin, J. Pumpanen, S. Rambal, E. Rotenberg, M. Sanz, J. Tenhunen, G. Seufert, F. Vaccari, T. Vesala, and D. Yakir. 2005. On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm. Global Change Biology 11: 1.424-1439). Maximum values of the quantum yield (alpha = 75 mmol.mol(-1)), photosynthetic capacity (A(max) = 3.4 mg CO(2) . m(-2).s-1), gross photosynthesis (P(g,max) = 1.16 g CO(2) . m(-2).d(-1)), and ecological light-use efficiency (epsilon(ecol) = 59 mmol . mol(-1)) of managed grasslands and high-production croplands exceeded those of most forest ecosystems, indicating the potential of nonforest ecosystems for uptake of atmospheric CO(2). Maximum values of gross primary production (8 600 g CO(2) . m(-2).yr(-1)), total ecosystem respiration (7 900 g CO(2) . m(-2).yr(-1)), and net CO(2) exchange (2 400 g CO(2) . m(-2).yr(-1)) were observed for intensively managed grasslands and high-yield crops, and are comparable to or higher than those for forest ecosystems, excluding some tropical forests. On average, 80% of the nonforest sites were apparent sinks for atmospheric CO(2), with mean net uptake of 700 g CO(2) . m(-2).yr(-1) for intensive grasslands and 933 g CO(2) . m(-2).d(-1) for croplands. However, part of these apparent sinks is accumulated in crops and forage, which are carbon pools that are harvested, transported, and decomposed off site. Therefore, although agricultural fields may be predominantly sinks for atmospheric CO(2), this does not imply that they are necessarily increasing their carbon stock.
ISSN: 1550-7424

hal-01190754
https://hal.archives-ouvertes.fr/hal-01190754
DOI : 10.2111/rem-d-09-00072.1
PRODINRA : 214043

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
IODP Site U1309 was drilled at Atlantis Massif, an oceanic core complex, at 30 degrees N on the Mid-Atlantic Ridge (MAR). We present the results of a bulk rock geochemical study (major and trace elements) carried out on 228 samples representative of the different lithologies sampled at this location. Over 96% of Hole U1309D is made up of gabbroic rocks. Diabases and basalts cross-cut the upper part of the section; they have depleted MORB compositions similar to basalts sampled at MAR 30 degrees N. Relics of mantle were recovered at shallow depth. Mantle peridotites show petrographic and geochemical evidence of extensive melt-rock interactions. Gabbroic rocks comprise: olivine-rich troctolites (>70% modal olivine) and troctolites having high Mg# (82-89), high Ni (up to 2300 ppm) and depleted trace element compositions (Yb 0.06-0.8 ppm); olivine gabbros and gabbros (including gabbronorites) with Mg# of 60-86 and low trace element contents (Yb 0.125-2.5 ppm); and oxide gabbros and leucocratic dykes with low Mg# (<50), low Ni (similar to 65 ppm) and high trace element contents (Yb up to 26 ppm). Troctolites and gabbros are amongst the most primitive and depleted oceanic gabbroic rocks. The main geochemical characteristics of Site U1309 gabbroic rocks are consistent with a formation as a cumulate sequence after a common parental MORB melt, although (lack of systematic) downhole variations indicate that the gabbroic series were built by multiple magma injections. In detail, textural and geochemical variations in olivine-rich troctolites and gabbronorites suggest chemical interaction (assimilation?) between the parental melt and the intruded lithosphere. Site U1309 gabbroic rocks do not represent the complementary magmatic product of 30 degrees N volcanics, although they sample the same mantle source. The bulk trace element composition of Site U1309 gabbroic rocks is similar to primitive MORB melt compositions; this implies that there was no large scale removal of melts from this gabbro section. The occurrence of such a large magmatic sequence implies that a high magmatic activity is associated with the formation of Atlantis Massif. Our results suggest that almost all melts feeding this magmatic system stays trapped into the intruded lithosphere.
ISSN: 0012-821X

hal-00413562
https://hal.archives-ouvertes.fr/hal-00413562
DOI : 10.1016/j.epsl.2008.12.034

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : While Amazonian forests are extraordinarily diverse, the abundance of trees is skewed strongly towards relatively few 'hyperdominant' species. In addition to their diversity, Amazonian trees are a key component of the global carbon cycle, assimilating and storing more carbon than any other ecosystem on Earth. Here we ask, using a unique data set of 530 forest plots, if the functions of storing and producing woody carbon are concentrated in a small number of tree species, whether the most abundant species also dominate carbon cycling, and whether dominant species are characterized by specific functional traits. We find that dominance of forest function is even more concentrated in a few species than is dominance of tree abundance, with only ≈1% of Amazon tree species responsible for 50% of carbon storage and productivity. Although those species that contribute most to biomass and productivity are often abundant, species maximum size is also influential, while the identity and ranking of dominant species varies by function and by region.
ISSN: 2041-1723

hal-01204225
https://hal.archives-ouvertes.fr/hal-01204225
DOI : 10.1038/ncomms7857
PRODINRA : 305614
PUBMED : 25919449

Résumé : Ce travail est l'expression d'une volonté de chercheurs, de la Carabe d'améliorer les connaissances scientifiques méso- et micro-météorologiques appliquées aux milieux insulaires sous influence des alizés et de développer la recherche dans ces domaines.On sait que le phénomène météorologique le plus remarquable impactant les îles de la Caraïbe reste le cyclone tropical. Mais d'autres phénomènes, a des échelles inferieures, telles que les pluies intenses, les houles, la dégradation de la qualité de l'air ont une importance aigüe en termes de risques naturels ou de risques sur la sante. Ces exemples attestent la nécessité d'utiliser des méthodes de descente d'échelle pour exploiter l'information météorologique et/ou climatique de grande échelle et dériver des scenarios locaux et régionaux appliques aux territoires insulaires. Ce défi est important car l'attente d'analyses scientifiques pertinentes dans ces domaines est grande.Les travaux présentés dans ce mémoire ont pour principaux objectifs la simulation numérique puis l'analyse des mécanismes méso- et micro-échelles qui induisent des circulations locales diurnes et nocturnes sur l'archipel de la Guadeloupe à l'aide de codes numériques météorologiques éprouves car largement utilises en recherche et en prévision opérationnelle.Ils constituent donc la première étude de modélisation numérique à haute résolution en basse atmosphère, par descente d'échelle dynamique, pour des intervalles d'espace compris entre 1 km et 111 m sur cet archipel.Le modelé atmosphérique Weather Research and Forecasting ARW V3.4 (WRF ARW), non-hydrostatique, a été utilise pour l'ensemble des simulations pour modéliser la troposphère depuis l'échelle globale à l'échelle de la turbulence.Trois situations météorologiques classiques réelles d'une durée de 48 heures, correspondant à 80 % des situations météorologiques observées dans la zone, alizes soutenus (AS), alizes moyens (AM), alizes faibles (AF) ont été examinées. Ces situations sont caractérisées par les valeurs du nombre de Froude local suivantes : 0,82 (AS), 0,41 (AM) et 0,21 (AF). Six domaines de modélisation ont été sélectionnés pour effectuer les descentes d'échelle dynamiques : D01 (maille de 27 km), D02 (maille de 9 km), D03 (maille de 3 km), D04 (maille de 1 km), D05 (maille de 333 m) et D06 (maille de 111 m) avec soixante-dix niveaux verticaux. Les quatre premiers domaines (D01 à D04) couvrent l'archipel de la Guadeloupe et sont utilisés en mode méso-échelle à l'aide d'un schéma d'ensemble de couche limite planétaire YSU. Les domaines D05 (couvrant l'île de la Basse-Terre et le centre de l'archipel) et D06 (couvrant la zone littorale et rurale du Petit Cul-de-Sac Marin et la zone urbaine de l'agglomération pointoise) sont utilisés en mode Large Eddy Simulation avec une fermeture de la turbulence 1,5 TKE 3D. Le modèle WRF a été forcé toutes les six heures par l'assimilation des champs d'analyses globales du modèle NCEP FNL (1° de résolution). Les simulations effectuées ont permis d'obtenir des champs de variables météorologiques 10-minutes à très hautes résolutions spatiales.Les résultats des simulations méso- et micro-échelles ont été confrontés aux valeurs expérimentales obtenues à l'aide de capteurs places sur des mâts météorologiques (campagne Atmo-Mangrov et réseau de mesure Météo-France). Il s'agissait d'optimiser l'utilisation des couplages de codes numériques tout en conservant la possibilité de les confronter aux observations expérimentales.Les résultats des simulations numériques micro-échelles, des différents cas (AS, AM, AF) sont utilisées pour forcer (c'est-à-dire définir les conditions limites) un modèle lagrangien de dispersion de particules : FLEXPART. Le système couple FLEXPART-WRF a été employé dans le domaine D06 pour étudier la dispersion du panache d'oxydes d'azote émis par la principale usine de production d'électricité de l'île.
The present work expresses the will of Caribbean researchers to improve the meso- and micro-meteorological scientific knowledge of the trade winds influenced island areas, and to develop research in these domains.It is well known that tropical hurricanes remain the most remarkable meteorological phenomena that affect the Caribbean islands. But some other phenomena, of smaller scale, such as intense rainfall events, swells, or air quality degradation, are of extreme importance for natural or health hazards. These examples show the need to use downscaling methods to exploit large scale meteorological or climatic information, and to obtain local and regional scenarios for the island areas. This is an important challenge, as sound scientific studies in these matters are eagerly expected. The aim of the research works exposed in the present dissertation is numerical simulation and analysis of the meso- and microscale mechanisms that induce diurnal and nocturnal local circulations in the Guadeloupe archipelago, using numerical meteorological models that are widely used in research and in operational forecasting.These works represent the first high-resolution (1 km to 111 m) numerical study of the lower atmosphere over the Guadeloupe archipelago. The Weather Research and Forecasting ARW 3.4 (WRF-ARW) model is used to simulate the troposphere from global scale to turbulence scale. Real cases of three typical weather types (80% of cases during a year) are examined during 48 hours : strong trade winds (STW), medium trade winds (MTW) and weak trade winds (WTW). These weather types are characterized by values of the local Froude number : 0.82 (STW), 0.41 (MTW) and 0.21 (WTW). Six domains have been selected for the dynamical downscaling : D01 (grid spacing of 27 km), D02 (grid spacing of 9 km), D03 (grid spacing of 3 km), D04 (grid spacing of 1 km), D05 (grid spacing of 333 m) and D06 (grid spacing of 111 m), including 70 vertical levels. The first four domains (D01 to D04) cover the Guadeloupe archipelago and are used in the meso-scale simulations with the planetary boundary layer scheme YSU (ensemble mean). Domain D05 (covering the Basse-Terre island and the middle of the archipelago) and domain D06 (covering the coastal and rural area of Le Petit Cul-de-Sac Marin and the urban area of Pointe-à-Pitre), are employed in the micro-scale simulation (LES) with the 3D TKE 1.5 order closure scheme. WRF has been 6 hourly reinitialized with the NCEP FNL global analyses (resolution of 1°). These simulations permitted to obtain 10-minutes meteorological variable fields with a very high resolution (111 m).Meso-scale and micro-scale model results have been evaluated with observational data from meteorological stations (field campaign Atmo-Mangrov, French Met Office).Once validated, the micro-scale model outputs have been used for the assimilation of the lagrangian particle dispersion model : FLEXPART. The coupling FLEXPART-WRF has been employed in domain D06, in order to analyze the dispersion of the nitrogen oxide plume emitted by the main power plant of the archipelago.

http://www.theses.fr/2014AGUY0735/document

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Little information exists on the effects of ocean acidification (OA) on the digestive and post-digestive processes in marine fish. Here, we investigated OA impacts (Δ pH = 0.5) on the trophic transfer of select trace elements in the clownfish Amphiprion ocellaris using radiotracer techniques. Assimilation efficiencies of three essential elements (Co, Mn and Zn) as well as their other short-term and long-term kinetic parameters in juvenile clownfish were not affected by this experimental pH change. In complement, their stomach pH during digestion were not affected by the variation in seawater pH. Such observations suggest that OA impacts do not affect element assimilation in these fish. This apparent pCO2 tolerance may imply that clownfish have the ability to self-regulate pH shifts in their digestive tract, or that they can metabolically accommodate such shifts. Such results are important to accurately assess future OA impacts on diverse marine biota, as such impacts are highly species specific, complex, and may be modulated by species-specific metabolic processes.
ISSN: 1932-6203

hal-01564009
https://hal-univ-perp.archives-ouvertes.fr/hal-01564009
https://hal-univ-perp.archives-ouvertes.fr/hal-01564009/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01564009/file/trophic%20transfer.pdf
DOI : 10.1371/journal.pone.0174344

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Kimberlites of the Udachnaya-East pipe (Siberia) include a uniquely dry and serpentine-free rock type with anomalously high contents of chlorine (Cl ≤ 6.1 wt%), alkalies (Na2O + K2O ≤ 10 wt%) and sulfur (S ≤ 0.50 wt%), referred to as a “salty” kimberlite. The straightforward interpretation is that the Na-, K-, Cl- and S-rich components originate directly from a carbonate-chloride kimberlitic magma that is anhydrous and alkali-rich. However, because brines and evaporites are present on the Siberian craton, previous studies proposed that the kimberlitic magma was contaminated by the assimilation of salt-rich crustal rocks. To clarify the origin of high Cl, alkalies and S in this unusual kimberlite, here we determine its sulfur speciation and isotopic composition and compare it to that of non-salty kimberlites and kimberlitic breccia from the same pipe, as well as potential contamination sources (hydrothermal sulfides and sulfates, country-rock sediment and brine collected in the area). The average δ34S of sulfides is − 1.4 ± 2.2‰ in the salty kimberlite, 2.1 ± 2.7‰ in the non-salty kimberlites and 14.2 ± 5.8‰ in the breccia. The average δ34S of sulfates in the salty kimberlites is 11.1 ± 1.8‰ and 27.3 ± 1.6‰ in the breccia. In contrast, the δ34S of potential contaminants range from 20 to 42‰ for hydrothermal sulfides, from 16 to 34‰ for hydrothermal sulfates, 34‰ for a country-rock sediment (Chukuck suite) and the regional brine aquifer. Our isotope analyses show that (1) in the salty kimberlites, neither sulfates nor sulfides can be simply explained by brine infiltration, hydrothermal alteration or the assimilation of known salt-rich country rocks and instead, we propose that they are late magmatic phases; (2) in the non-salty kimberlite and breccia, brine infiltration lead to sulfate reduction and the formation of secondary sulfides – this explains the removal of salts, alkali-carbonates and sulfates, as well as the minor olivine serpentinization; (3) hydrothermal sulfur was added to the kimberlitic breccia, but not to the massive kimberlites. In situ measurements of sulfides confirm this scenario, clearly showing the addition of two sulfide populations in the breccia (pyrite-pyrrhotites with average δ34S of 7.9 ± 3.4‰ and chalcopyrites with average δ34S of 38.0 ± 0.4‰) whereas the salty and non-salty kimberlites preserve a unique population of djerfisherites (Cl- and K-rich sulfides) with δ34S values within the mantle range. This study provides the first direct evidence of alkaline igneous rocks in which magmatic sulfate is more abundant than sulfide. Although sulfates have been rarely reported in mantle materials, sulfate-rich melts may be more common in the mantle than previously thought and could balance the sulfur isotope budget of Earth's mantle.
ISSN: 0009-2541

hal-01571982
https://hal.archives-ouvertes.fr/hal-01571982
DOI : 10.1016/j.chemgeo.2016.10.037