Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Intraguild predation (IGP) is a type of biological interaction involving the killing and consuming of competing species that exploit similar and often limited resources. This phenomenon is widespread among a great variety of taxonomic groups and has already been reported for mosquito (Diptera: Culicidae) larvae. Moreover, the larvae of certain mosquito species of the tribe Sabethini have evolved modified mouthparts ending in rigid apical structures signaling their capacity to be effective intraguild predators. We assumed that IGP confers a selective advantage under severe competitive conditions by both providing an immediate energetic gain and reducing potential competition. Because potential competition is likely to increase with decreasing habitat size, we hypothesized that the proportion of species with modified mouthparts would increase in smaller aquatic habitats. We tested this hypothesis by examining the mosquito species naturally associated with phytotelmata of decreasing sizes in French Guiana. We show that the degree of specialization in mosquito-phytotelm associations is high, suggesting a long coevolutive process. Indeed, short-term interaction experiments confirmed that species with modified mouthparts are able to prey upon similarly-sized intraguild prey and are, thus, effective intraguild predators. In addition, these species are larger and associated with smaller phytotelmata than those with typical mouthparts. Moreover, below a certain threshold of phytotelm size, only species with modified mouthparts were present. These results show that IGP confers a selective advantage under severe competitive conditions and results from the coadaptation of mosquito species to their specific phytotelm habitat. The presence of functionally analogous structures in different mosquito genera also implies that IGP has emerged from convergent evolution in small phytotelmata.
ISSN: 0269-7653

hal-01603304
https://hal.archives-ouvertes.fr/hal-01603304
DOI : 10.1007/s10682-016-9862-3
PRODINRA : 405771

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Herbivores are often implicated in the generation of the extraordinarily diverse tropical flora. One hypothesis linking enemies to plant diversification posits that the evolution of novel defenses allows plants to escape their enemies and expand their ranges. When range expansion involves entering a new habitat type, this could accelerate defense evolution if habitats contain different assemblages of herbivores and/or divergent resource availabilities that affect plant defense allocation. We evaluated this hypothesis by investigating two sister habitat specialist ecotypes of Protium subserratum (Burseraceae), a common Amazonian tree that occurs in white-sand and terra firme forests. We collected insect herbivores feeding on the plants, assessed whether growth differences between habitats were genetically based using a reciprocal transplant experiment, and sampled multiple populations of both lineages for defense chemistry. Protium subserratum plants were attacked mainly by chrysomelid beetles and cicadellid hemipterans. Assemblages of insect herbivores were dissimilar between populations of ecotypes from different habitats, as well as from the same habitat 100 km distant. Populations from terra firme habitats grew significantly faster than white-sand populations; they were taller, produced more leaf area, and had more chlorophyll. White-sand populations expressed more dry mass of secondary compounds and accumulated more flavone glycosides and oxidized terpenes, whereas terra firme populations produced a coumaroylquinic acid that was absent from white-sand populations. We interpret these results as strong evidence that herbivores and resource availability select for divergent types and amounts of defense investment in white-sand and terra firme lineages of Protium subserratum, which may contribute to habitat-mediated speciation in these trees.
ISSN: 0012-9658

hal-01032403
https://hal.archives-ouvertes.fr/hal-01032403
DOI : 10.1890/12-1920.1

Éditeur(s) : Nature
Résumé : Mud volcanism is an important natural source of the greenhouse gas methane to the hydrosphere and atmosphere(1,2). Recent investigations show that the number of active submarine mud volcanoes might be much higher than anticipated ( for example, see refs 3 - 5), and that gas emitted from deep-sea seeps might reach the upper mixed ocean(6-8). Unfortunately, global methane emission from active submarine mud volcanoes cannot be quantified because their number and gas release are unknown(9). It is also unclear how efficiently methane-oxidizing microorganisms remove methane. Here we investigate the methane-emitting Haakon Mosby Mud Volcano (HMMV, Barents Sea, 72 degrees N, 14 degrees 44' E; 1,250 m water depth) to provide quantitative estimates of the in situ composition, distribution and activity of methanotrophs in relation to gas emission. The HMMV hosts three key communities: aerobic methanotrophic bacteria (Methylococcales), anaerobic methanotrophic archaea (ANME-2) thriving below siboglinid tubeworms, and a previously undescribed clade of archaea (ANME-3) associated with bacterial mats. We found that the upward flow of sulphate- and oxygen-free mud volcano fluids restricts the availability of these electron acceptors for methane oxidation, and hence the habitat range of methanotrophs. This mechanism limits the capacity of the microbial methane filter at active marine mud volcanoes to <40% of the total flux.
Nature (depuis 1997) (0028-0836) (Nature), 2006-10 , Vol. 443 , N. 7113 , P. 854-858

Droits : 2006 Nature Publishing Group
http://archimer.ifremer.fr/doc/2006/publication-4514.pdf
DOI:10.1038/nature05227
http://archimer.ifremer.fr/doc/00000/4514/

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Different marine habitats are characterised by different soundscapes. How or which differences may be representative of the habitat characteristics and/or community structure remains however to be explored. A growing project in passive acoustics is to find a way to use soundscapes to have information on the habitat and on its changes. In this study we have successfully tested the potential of two acoustic indices, i.e. the average sound pressure level and the acoustic complexity index based on the frequency spectrum. Inside and outside marine protected areas of Moorea Island (French Polynesia), sound pressure level was positively correlated with the characteristics of the substratum and acoustic complexity was positively correlated with fish diversity. It clearly shows soundscape can be used to evaluate the acoustic features of marine protected areas, which presented a significantly higher ambient sound pressure level and were more acoustically complex than non-protected areas. This study further emphasizes the importance of acoustics as a tool in the monitoring of marine environments and in the elaboration and management of future conservation plans. Coral reef ecosystems are among the most biologically diverse and complex marine ecosystems worldwide. In addition to their biological and ecological importance, coral reefs support major economic and physical functions (e.g. food production, tourism, biotechnology development and coastal protection) that are essential for many countries 1. Unfortunately, coral reefs are severely threatened: 20% of coral reefs can no longer be defined as such, another 25% are currently endangered and another 25% will be endangered by 2050 2. The frequency and severity of natural perturbations (e.g. cyclone, outbreaks of predators, particularly the crown-of-thorns starfish [COTS] Acanthaster planci) and anthropogenic perturbations (e.g. ocean acidification, pesticides, rising seawater temperatures) on coral reefs have greatly increased worldwide in the last three decades, and, as a consequence, reef communities (fish, coral and benthic invertebrates) have suffered unprecedented levels of decline 3,4
ISSN: 2045-2322

hal-01370610
https://hal-uvsq.archives-ouvertes.fr/hal-01370610
https://hal-uvsq.archives-ouvertes.fr/hal-01370610/document
https://hal-uvsq.archives-ouvertes.fr/hal-01370610/file/2016%20Sci.Rep.pdf
DOI : 10.1038/srep33326

Résumé : 1 - Study's goals review The management of Norway Lobster and Hake fisheries can be considered as the most important issue in the Gascogne gulf. Calculation methods used to evaluate prediction variations under various efforts and mesh constraints all pinpoint to the crucial role narrow mesh fishing plays in Hakes' Northern stock status. The involvement of Gascogne gulf Norway Lobster fisheries regarding Hakes over exploitation seems over dimensioned when comparing the size of both of these stocks. Hake stocks spread from Northern Great Britain to Northern Spain, while Norway Lobster stocks are located in the Gascogne gulf's mud flats. The biological solution is well known and consists in globally increasing mesh nets to 80mm which would bring up Hakes yield to its most. It would be unreal to pretend all parties involved in Hake stocks will come to use them. For now, it is mostly an economical issue since many vessels continue on with an exploitation scheme dating from the 60's and fish on coastal mud flats which are the most exploited zones and where their catch is detrimental to juvenile class Hakes and Norway Lobsters. Considering our limited time, this study will cover bio- economical modelisation preparation. You will therefore find a description of fisheries and an exploitation assessment based on 1986's available data. 2 - Accomplished work 2. 1 Fishery description Presenting the problems and preparing ulterior analyses was first and foremost. Norway Lobster vessels supposedly, according to evaluation models used, test immature Hakes in such a manner that all stock exploitation is jeopardized. Norway Lobster distribution is closely linked to the nature of the ocean floor since it can only build its habitat on fine sediment. Hakes' habitat is not as restrictive and is linked to food supply, especially euphausiid shrimps, so they can be found on sandy and sandy-sedimental floors. Norway Lobsters are sought by a fleet of 400 to 450 ships which characteristics widely vary according to their home port. On the northern part, fisheries are close to exploitation ports where Norway Lobsters and miscellaneous catch yield is sufficient to support an older fleet. On the southern part, the structure is diversified and flexibility usually rules, more modern vessels can easily switch their target on a seasonal or daily basis. Globally, Hakes' northern stocks are slightly on the rise. This rise is probably due to global mesh size increase, even if slight and a decrease on fishing effort where immature species are caught. Norway Lobster stocks unloading is stable or slightly lower and yields, as far as northern fishery are concerned, vary and oscillate between ±15 to ±20 % at about an average of 100 kg/day. Biological parameters used in the evaluations for each species are those used in CIEM and CEE work cells. Among those parameters, those describing growth are the greatest. For Hakes, an intermediary growth equation between males and females has been used. For Norway Lobsters, both sexes are treated separately. Simulations were carried out according to 3 types of data: Norway Lobster vessels fishing effort variations. Norway Lobster vessels mesh increase. Norway Lobster vessels fishing effort decrease or mesh increasing go along in the same direction for Hake and Norway Lobster stock production (chart A and B). Lastly, a brief study on results evaluation significance was done to modify: - the size of Hake rejects by Norway Lobster vessels. The range of sizes stays the same but the amount in each class varies according to the same percentage. - Norway Lobsters growth parameters, both values used (L» = 76 mm and k = 0.11 for males, L°° = 56 mm and k = 0.14 for females) representing the "high" hypothesis. In the first case, a 20% error rate for rejects evaluation with 60 mm mesh would only bring a 3% modification rate on global stock production. Those first results are contradicting usual evaluation conclusions and it will be necessary to recalculate by modifying the size class step. In the second case, to decrease L» and increase growth speed, in time production variations remain within usual inter annual fluctuations. In all figure cases, calculations confirming greater yield for in time production through hypothetical mesh size increase to 60 mm, are definitely well founded.
1 - Rappel des buts de l'étude La gestion des pêcheries de merlu et de langoustine peut être considérée comme le problème le plus important du Golfe de Gascogne. Les méthodes de calcul employées pour évaluer les variations de la production sous diverses contraintes d'effort et de maillage mettent toutes l'accent sur le rôle capital des pêcheries à petits maillages sur l'état du stock nord de merlu. Le niveau de responsabilité des pêcheries de langoustine du Golfe de Gascogne dans la surexploitation du merlu semble démesuré eu égard aux dimensions respectives des deux stocks. Le stock de merlu s'étend du Nord des Iles Britanniques au Nord de l'Espagne alors que le stock de langoustine est localisé aux vasièrés du Golfe de Gascogne. La solution biologique du problème est connue et tient à une augmentation généralisée des maillages à 80 mm qui amènerait le rendement du stock de merlu à son maximum. Il serait illusoire de prétendre que tous les acteurs opérant sur le stock de merlu arriveront jamais à l'utiliser. Pour le moment, le problème se pose essentiellement en termes économiques car beaucoup de navires poursuivent un schéma d'exploitation hérité des années 1960 et pèchent sur des vasièrés côtières qui sont les zones les plus exploitées et où ils effectuent leurs captures au détriment des jeunes classes d'âge de merlu et de langoustine. En raison des délais impartis, cette étude constitue la préparation à une modélisation bioéconomique. On y trouvera donc une description des pêcheries et un bilan de l'exploitation sur les données disponibles en 1986. 2 - Travaux effectués 2 . 1 Description de la pêcherie Il s'agissait avant tout de poser les problèmes et de préparer les analyses ultérieures. Les langoustiniers sont présumés, d'après les modèles d'évaluation employés, effectuer sur les immatures de merlu des prélèvements tels qu'ils mettent en danger toute l'exploitation du stock. La distribution de la langoustine est très liée à la nature du fond car elle ne peut construire son terrier que sur des fonds de vase fine. Celle du merlu est beaucoup plus large et inféodée à la recherche de nourriture, crevettes euphausiacées en particulier, on le trouve donc sur les fonds sableux à sablo-vaseux. La langoustine est recherchée par une flottille de 400 à 450 bateaux dont les caractéristiques sont très variables suivant leur appartenance géographique. Au nord, la pêcherie est proche des ports exploitants et les rendements en langoustine et en prise accessoire sont suffisants pour faire vivre une flottille ancienne. Vers le sud, la structure est très diversifiée et la flexibilité est généralement la règle et les navires de construction récente peuvent changer de cible aisément de façon saisonnière ou au cours de la même journée de pêche. Globalement, les débarquements de merlu du stock nord sont en légère hausse. Ce redressement est dû probablement aux augmentations de maillage, même légères, généralisées et à une baisse de l'effort sur les pêcheries où s'effectuent des captures d'immatures. Les débarquements de langoustine sont stables ou en légère baisse et les rendements, au moins sur la pêcherie du nord, varient avec des oscillations de ±15 à ±20 % autour d'une moyenne de 100 kg/jour. Les paramètres biologiques utilisés pour chaque espèce dans les évaluations sont ceux en usage dans les groupes de travail du CIEM et de la CEE. Parmi ces paramètres, ceux décrivant la croissance sont les plus importants. Pour le merlu une équation de croissance intermédiaire entre mâles et femelles a été utilisée. Pour la langoustine les deux sexes sont traitées séparément. Les simulations ont porté sur trois types de données : Variations de l'effort des langoustiniers Augmentation du maillage des langoustiniers La diminution de l'effort des langoustiniers ou L'augmentation de maillage agisse très exactement dans le même sens sur la production des stocks de merlu et de langoustine. Enfin une étude succincte de la sensibilité des résultats des évaluations a été effectuée pour des modifications : - de la composition en taille des rejets de merlu par les langoustiniers. L'étendue des tailles reste la même mais le nombre dans chaque classe varie selon le même pourcentage. des paramètres de croissance de la langoustine, le couple de valeurs utilisées (L» = 76 mm et k = 0.11 pour les mâles, L°° = 56 mm et k = 0.14 pour les femelles) constituant l'hypothèse "haute" Dans le premier cas, une erreur de 20 % sur l'évaluation des rejets pour un cnaillage de 60 mm n'apporterait qu'une modification de 3 % dans la production globale du stock. Ces premiers résultats sont en contradiction avec les conclusions habituelles des évaluations et il sera nécessaire de reprendre les calculs en modifiant le pas des classes de taille. Dans le deuxième cas, pour une diminution de L» et une augmentation de la vitesse de croissance, les variations de la production à terme restent à l'intérieur des fluctuations interannuelles habituelles. Dans tous les cas de figure, les calculs confirmant l'augmentation de la production à terme dans l'hypothèse d'une augmentation de maillage à 60 mm sont d'une robustesse à toute épreuve.

Droits : 1987 Ifremer
http://archimer.ifremer.fr/doc/1987/rapport-1763.pdf
http://archimer.ifremer.fr/doc/00000/1763/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Tourism in marine and coastal areas is a complex phenomenon. Tourism in coastal areas brings along both positive and negative effects on the environment as a result of activities exerted upon such areas by proponents and tourists. While tourism development results in the modification of coastal environments, it can also flourish where such environments are left unmodified as the pristine nature of the environments attract visitors. Alternatively, in order for marine and coastal tourism to develop and continue to attract tourists, there is the need for an integrated approach that can be translated into a sustainable coastal tourism development. The aim of this paper therefore, is to postulate and develop a framework and guideline to be addressed by decision-makers for coastal areas. Frameworks for sustainable coastal tourism development and coastal zone management (CZM) are suggested taking into account the multifaceted nature of the coastal environment. Although Hong Kong epitomizes a successful tourism destination, alternative tourism is attractive as the diversity of habitats and life forms makes the Hong Kong coastal area unique. For the ecological richness to continue to provide avenues for alternative tourism, it is argued that such frameworks should be adaptable and implemented for a sustainable coastal tourism policy.
La gestion des processus touristique dans des secteurs marins et côtiers est complexe. Les pratiques touristiques et récréatives s’accompagnent d’effets positifs et négatifs sur l'environnement. Le développement de tourisme peut s’épanouir sur des environnements faiblement modifiés mais il n’est pas sans conséquence sur la modification des environnements côtiers. Une gestion intégrée s’impose pour intégrer les pratiques touristiques dans un processus de développement côtier soutenable. Le but de cet article est de proposer un cadre et une orientation pour la gestion intégrée des secteurs côtiers. Des cadres pour le développement côtier soutenable de tourisme et la gestion côtière de zone (CZM) sont suggérés en tenant compte de la nature diversifiée des environnements côtiers. Bien que Hong Kong constitue destination touristique réussie, le tourisme littoral, avec des approches alternatives, est aussi un aspect à promouvoir tant autour de la diversité des habitats et que des formes de vie qui rendent le littoral d’Hong Kong unique.
Hong Kong

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1373
http://journals.openedition.org/etudescaribeennes/1373

Éditeur(s) : Inter-research
Résumé : We propose a statistical approach based on multivariate analysis and general linear models to test the consequences of removal of reserve status from the Abore Reef fish assemblage of the Abore Reef reserve, New Caledonia. Consequences on fish density were examined at the level of fish assemblage, accounting for habitat. Fish counts and habitat-related information were collected before and after the removal of reserve status, both inside and outside the reserve. Species groups were constructed on the basis of additional information on behavioural characteristics and taxonomy. The impact of the removal of reserve status was assessed by using 2 habitat proxies corresponding to 2 spatial scales and by considering several criteria for grouping species. Habitat appeared to be a determining factor in explaining density variations. Significant positive effects were found for several species groups such as macrocarnivores, piscivores, herbivores, Lethrinidae and Siganidae. A counterintuitive negative effect was observed for Acanthuridae. No significant differences between the area which remained closed to fishing and the area open to fishing were found for the other species groups. The approach allows for a synoptic diagnosis of the impact of changes in reserve status at the fish assemblage level. It could be used to develop and select potential indicators for monitoring such impacts on fish assemblages in coral reef ecosystems and in other contexts.
Marine Ecology Progress Series (0171-8630) (Inter-research), 2005 , Vol. 292 , P. 271-286

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10970/7574.pdf
http://archimer.ifremer.fr/doc/00000/10970/

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Acoustic recording has been recognized as a valuable tool for non-intrusive monitoring of the marine environment, complementing traditional visual surveys. Acoustic surveys conducted on coral ecosystems have so far been restricted to barrier reefs and to shallow depths (10–30 m). Since they may provide refuge for coral reef organisms, the monitoring of outer reef slopes and describing of the soundscapes of deeper environment could provide insights into the characteristics of different biotopes of coral ecosystems. In this study, the acoustic features of four different habitats, with different topographies and substrates, located at different depths from 10 to 100 m, were recorded during daytime on the outer reef slope of the north Coast of Moorea Island (French Polynesia). Barrier reefs appeared to be the noisiest habitats whereas the average sound levels at other habitats decreased with their distance from the reef and with increasing depth. However, sound levels were higher than expected by propagation models, supporting that these habitats possess their own sound sources. While reef sounds are known to attract marine larvae, sounds from deeper habitats may then also have a non-negligible attractive potential, coming into play before the reef itself.
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01654685
http://hal.upmc.fr/hal-01654685
http://hal.upmc.fr/hal-01654685/document
http://hal.upmc.fr/hal-01654685/file/peerj-4019.pdf
DOI : 10.7717/peerj.4019

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
While the effects of deforestation and habitat fragmentation on parasite prevalence or richness are well investigated, host-parasite networks are still understudied despite their importance in understanding the mechanisms of these major disturbances. Because fragmentation may negatively impact species occupancy, abundance and co-occurrence, we predict a link between spatiotemporal changes in habitat and the architecture of host-parasite networks. For this, we used an extensive data set on 16 rodent species and 29 helminth species from seven localities of South-East Asia. We analysed the effects of rapid deforestation on connectance and modularity of helminth-parasite networks. We estimated both the degree of fragmentation and the rate of deforestation through the development of land uses and their changes through the last 20 to 30years in order to take into account the dynamics of habitat fragmentation in our statistical analyses. We found that rapid fragmentation does not affect helminth species richness per se but impacts host-parasite interactions as the rodent-helminth network becomes less connected and more modular. Our results suggest that parasite sharing among host species may become more difficult to maintain with the increase of habitat disturbance.
ISSN: 0021-8790

hal-01355307
https://hal.archives-ouvertes.fr/hal-01355307
DOI : 10.1111/1365-2656.12368
IRD : fdi:010064927

Éditeur(s) : Elsevier
Résumé : The ZoNeCo programme, devoted to the evaluation of living and non-living marine resources within the Economic Zone of New Caledonia, illustrates clearly the Marine Benthic Habitats concept. It exhibits the study of the physical environment and disciplines such as geology and physical oceanography. The results acquired in these fields are used as bases to study the presence and the distribution of living species within a given habitat. The knowledge of all the parameters relative to each discipline is a useful guide for the evaluation and the sustainable management of living and nonliving resources.
Le programme ZoNéCo d'évaluation des ressources marines vivantes et non vivantes de la zone économique de Nouvelle-Calédonie illustre clairement le concept d'habitat benthique marin. Il implique l'étude du milieu physique et les disciplines telles que la géologie, la géophysique et l'océanographie physique. Les résultats acquis serviront de base à l'étude de la présence et de la répartition des espèces vivantes dans un habitat considéré. La connaissance de l'ensemble des paramètres relatifs à chacune des disciplines est un guide précieux pour l'évaluation et la gestion harmonieuse des ressources.
Oceanologica Acta (0399-1784) (Elsevier), 1999-11 , Vol. 22 , N. 6 , P. 557-566

Droits : 1999 Ifremer / CNRS / IRD / Editions scientifiques et medicales Elsevier SAS
http://archimer.ifremer.fr/doc/1999/publication-832.pdf
DOI:10.1016/S0399-1784(00)88947-1
http://archimer.ifremer.fr/doc/00000/832/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
During their immature life stages, malaria mosquitoes are exposed to a wide array of microbes and contaminants from the aquatic habitats. Although prior studies have suggested that environmental exposure shapes the microbial community structure in the adult mosquito, most reports have focused on laboratory-based experiments and on a single mosquito epithelium, the gut. In this study, we investigated the influence of the breeding site on the development of the Anopheles coluzzii and Anopheles gambiae microbiota in natural conditions. We characterized bacterial communities from aquatic habitats, at surface microlayer and subsurface water levels, to freshly emerge adult mosquitoes using multiplexed 16S rRNA gene pyrosequencing and we separately analyzed the microbiota associated with the different epithelia of adult individual, midguts, ovaries and salivary glands. We found that the distribution of bacterial communities in the aquatic habitats differed according to the depth of water collections. Inter-individual variation of bacterial composition was large in larvae guts but adult mosquitoes from a same breeding site shared quite similar microbiota. Although some differences in bacterial abundances were highlighted between the different epithelia of freshly emerged An. coluzzii and An. gambiae, an intriguing feature from our study is the particular similarity of the overall bacterial communities. Our results call for further investigations on the bacterial population dynamics in the different tissues to determine the distinctive characteristics of each microbiota during the mosquito lifespan and to identify specific interactions between certain key phyla or species and the insect life history traits.
ISSN: 1567-1348

hal-01546167
https://hal.archives-ouvertes.fr/hal-01546167
DOI : 10.1016/j.meegid.2014.09.029

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
AimBiological invasions are major contributors to global change and native biodiversity decline. However, they are overlooked in marine conservation plans. Here, we examine for the first time the extent to which marine conservation planning research has addressed (or ignored) biological invasions. Furthermore, we explore the change of spatial priorities in conservation plans when different approaches are used to incorporate the presence and impacts of invasive species.LocationGlobal analysis with a focus on the Mediterranean Sea region.MethodsWe conducted a systematic literature review consisting of three steps: (1) article selection using a search engine, (2) abstract screening and (3) review of pertinent articles, which were identified in the second step. The information extracted included the scale and geographical location of each case study as well as the approach followed regarding invasive species. We also applied the software Marxan to produce and compare conservation plans for the Mediterranean Sea that either protect, or avoid areas impacted by invasives, or ignore the issue. One case study focused on the protection of critical habitats, and the other on endemic fish species.ResultsWe found that of 119 papers on marine spatial plans in specific biogeographic regions, only three (2.5%) explicitly took into account invasive species. When comparing the different conservation plans for each case study, we found that the majority of selected sites for protection (ca. 80%) changed in the critical habitat case study, while this proportion was lower but substantial (27%) in the endemic fish species case study.Main conclusionsBiological invasions are being widely disregarded when planning for conservation in the marine environment across local to global scales. More explicit consideration of biological invasions can significantly alter spatial conservation priorities. Future conservation plans should explicitly account for biological invasions to optimize the selection of marine protected areas.
ISSN: 1366-9516

hal-01431351
https://hal-univ-perp.archives-ouvertes.fr/hal-01431351
DOI : 10.1111/ddi.12491

Éditeur(s) : HAL CCSD
Résumé : Integrating ecological connectivity into marine ecosystem management and planning is important, especially in a global context of severe fish stocks depletion and growing habitat degradation. Environmental tools such as Marine Protected Areas have been proposed to protect biodiversity, restore damaged ecosystems, sustain fisheries, and rebuild overexploited stocks. The effectiveness of marine protected areas depends in part on the maintenance of connectivity between marine populations, linked by ecological processes such as larval dispersal. In this thesis, we applied a biophysical model driven by ocean currents derived from satellite altimetry to evaluate connectivity between Western Indian Ocean reefs and across the current MPA system in the Mediterranean Sea. We applied different methods of analysis such as graph-theoretic and clustering. In the Western Indian Ocean, marine connectivity analyses show that the number of connections between reefs increases with fish pelagic larval duration. It also highlights a low connectivity across the region and a high interconnectivity within several regions (Mozambique Channel, Mascarene archipelago). In the Mediterranean Sea, connectance is globally low at the regional scale. This connectance is more important in Western than Eastern Mediterranean. Moreover, the marine connectivity analyses revealed high domestic connectivity rates. Depending on the study area, priority reefs or sites for MPA implementation are proposed. Finally, implications for transboundary marine policies and regional cooperation are discussed.
Intégrer les connaissances sur la connectivité écologique dans la gestion des écosystèmes marins est essentiel, surtout dans un contexte d'appauvrissement des ressources marines et de dégradation des habitats côtiers à l'échelle mondiale. Des outils environnementaux, tels que les Aires Marines Protégées ont été mises en œuvre pour protéger la biodiversité, restaurer les écosystèmes endommagés, soutenir les pêcheries et reconstituer les stocks surexploités. Leur efficacité dépend en partie du maintien de la connectivité entre les populations marines, assurée à travers divers processus écologiques dont la dispersion larvaire. Dans le cadre de ce travail de thèse, un modèle biophysique intégrant des données de courants, issues de mesures d'altimétrie par satellite, a été utilisé pour évaluer la connectivité entre les récifs de l'océan Indien d'une part, et à travers le réseau d'AMP de Méditerranée d'autre part. Différentes méthodes d'analyse ont été utilisées, telles que la théorie des graphes et le clustering. Dans l'océan Indien occidental, l'analyse des connectivités marines montre que le nombre de connexions entre les récifs augmente avec la durée de vie larvaire des poissons. Elle met également en évidence une faible connectivité à l'échelle de la région, mais une forte inter-connectivité au sein de plusieurs sous-régions (Canal du Mozambique, Mascareignes). En Méditerranée, la connectance est globalement faible à l'échelle régionale, bien que plus importante dans le bassin occidental que le bassin oriental. L'analyse des connectivités marines montre également un taux de connectivité élevé à l'échelle d'un même pays. Selon le cas d'étude, une liste de récifs ou de sites prioritaires dans la mise en œuvre des AMP a été proposée. Enfin, les implications de ces résultats en termes de politiques transfrontalières et de coopération régionale sont discutées.
https://tel.archives-ouvertes.fr/tel-01269631

NNT : 2015LARE0003
tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631/document
https://tel.archives-ouvertes.fr/tel-01269631/file/2015lare0003_ECrochelet.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The life-history traits and population dynamics of species are increasingly being attributed to the characteristics of their preferred habitats. While coral reef fish are often strongly associated with particular habitats, long-term studies establishing the demographic and life-history consequences of occupying different reef substrata are rare and no studies have monitored individuals in situ over their lifetime and determined the fate of their offspring. Here, we documented a quasi-turnover and local reproductive success for an entire population of orange clownfish (Amphiprion percula) from Kimbe Island, Papua New Guinea, by taking bi-annual samples of DNA over a 10-yr period (2003–2013). We compared demographic and life-history traits of individuals living on two host anemone species, Heteractis magnifica and Stichodactyla gigantea, including female size, adult continued presence (a proxy for relative longevity range), early post-settlement growth, the number of eggs per clutch and ‘local’ reproductive success (defined for each adult as the number of offspring returning to the natal population). Our results indicate that while the relative longevity of adults was similar on both host anemone species, females living in H. magnifica were larger than females in S. gigantea. However, despite females growing larger and producing more eggs on H. magnifica, we found that local reproductive success was significantly higher for clownfish living in S. gigantea. Life-history traits also exhibited local spatial variation, with higher local reproductive success recorded for adults living on S. gigantea on the eastern side of the island. Our findings support a ‘silver-spoon’ hypothesis that predicts individuals that are fortunate enough to recruit into good habitat and location will be rewarded with higher long-term reproductive success and will make a disproportionate contribution to population renewal.
ISSN: 0722-4028

hal-01357939
https://hal-univ-perp.archives-ouvertes.fr/hal-01357939
DOI : 10.1007/s00338-016-1485-1

Éditeur(s) : Public Library Science
Résumé : Observing spatial and temporal variations of marine biodiversity from non-destructive techniques is central for understanding ecosystem resilience, and for monitoring and assessing conservation strategies, e.g. Marine Protected Areas. Observations are generally obtained through Underwater Visual Censuses (UVC) conducted by divers. The problems inherent to the presence of divers have been discussed in several papers. Video techniques are increasingly used for observing underwater macrofauna and habitat. Most video techniques that do not need the presence of a diver use baited remote systems. In this paper, we present an original video technique which relies on a remote unbaited rotating remote system including a high definition camera. The system is set on the sea floor to record images. These are then analysed at the office to quantify biotic and abiotic sea bottom cover, and to identify and count fish species and other species like marine turtles. The technique was extensively tested in a highly diversified coral reef ecosystem in the South Lagoon of New Caledonia, based on a protocol covering both protected and unprotected areas in major lagoon habitats. The technique enabled to detect and identify a large number of species, and in particular fished species, which were not disturbed by the system. Habitat could easily be investigated through the images. A large number of observations could be carried out per day at sea. This study showed the strong potential of this non obtrusive technique for observing both macrofauna and habitat. It offers a unique spatial coverage and can be implemented at sea at a reasonable cost by non-expert staff. As such, this technique is particularly interesting for investigating and monitoring coastal biodiversity in the light of current conservation challenges and increasing monitoring needs.
Plos One (1932-6203) (Public Library Science), 2012-02 , Vol. 7 , N. 2 , P. -

Droits : 2012 Pelletier et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License
http://archimer.ifremer.fr/doc/00078/18879/16453.pdf
DOI:10.1371/journal.pone.0030536
http://archimer.ifremer.fr/doc/00078/18879/

Éditeur(s) : HAL CCSD Oldendorf/Luhe
Résumé : International audience
Unmanned aerial vehicles (UAVs) are being increasingly used in studies of marinefauna. Here, we tested the use of a UAV (DJI Phantom II®) to assess fine-scale variation in densitiesof 2 elasmobranchs (blacktip reef sharks Carcharhinus melanopterus and pink whiprays Himanturafai) on reef systems off Moorea (French Polynesia). We flew parallel transects designed to samplereef habitats (fringing, channel and sandflat habitats) across 2 survey blocks. Block 1 included ashark and ray provisioning site with potentially higher elasmobranch densities, whereas Block 2most likely had lower densities with no provisioning activities. Across 10 survey days in July 2014,we flew 3 transects (400 m) within each survey block (n = 60 total transect passes). As expected,densities (animals ha−1) were significantly higher in Block 1 than in Block 2, particularly where provisioningactivities occur. Differences between habitats surveyed were also found. Our study providesthe first direct estimates of shark and ray densities in coral-reef ecosystems and demonstratesthat UAVs can produce important fishery-independent data for elasmobranchs, particularly inshallow-water habitats.
ISSN: 0171-8630

hal-01416757
https://hal-univ-perp.archives-ouvertes.fr/hal-01416757
DOI : 10.3354/meps11945

Éditeur(s) : Elsevier Sci Ltd
Résumé : Time-series studies have reported trophic cascades in land, freshwater and marine environments in many geographic areas. However, the spatial extent of habitats, a key metric of ecosystem structure, has not been mapped in these studies. Marine reserves can provide experimental, before-after and inside-outside (control-impacted), situations for assessing the impact of fishing on ecosystems. We mapped seabed habitats and their associated communities (biotopes) in New Zealand's oldest marine reserve for comparison with pre-reserve maps created about 30 years previously. Areas grazed bare by sea urchins were entirely replaced in the centre of the reserve by kelp, or alga turf, an intermediate biotope between heavily grazed encrusting algae and lightly grazed kelp. Urchins declined following increased abundance and body size of spiny (rock) lobsters and fish (especially snapper) in the reserve but maintained bare rock outside. While this gradient in habitat change matched the gradient of predator abundance, it also matched the extent of reef habitat area. Thus the trophic cascade may be influenced by the effect of habitat on the abundance and behavioural interactions of urchins and their predators. Further ecosystem changes may arise should the abundance of mega-predators, such as seals, cetaceans and large sharks, increase in the region; if parasites become pathogenic; and/or when invasive species reach the reserve. No-take marine reserves provide real-world experiments that show the importance of species in food webs, and the consequences of fishing for ecosystems. Because these changes in ecosystem structure may continue, and will vary with environment, climate and species distributions, reserves need to be permanent and replicated geographically. Habitat maps should be produced for all reserves to enable ecological changes in the ecosystem to be spatially quantified. (C) 2012 Elsevier Ltd. All rights reserved.
Biological Conservation (0006-3207) (Elsevier Sci Ltd), 2012-10 , Vol. 155 , P. 193-201

Droits : 2012 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00107/21842/20067.pdf
DOI:10.1016/j.biocon.2012.05.009
http://archimer.ifremer.fr/doc/00107/21842/

Éditeur(s) : EDP Sciences
Résumé : Monitoring the abundance of green turtles (Chelonia mydas) is necessary to assess population trends and risks of collapse. This note presents a study aimed at comparing three techniques for the direct estimation of green turtle numbers in their foraging habitats (seagrass beds and reef flats). The experiment was carried out at Mayotte Island, Western Indian Ocean. The techniques involved were surveys by snorkel, and aerial surveys using a microlight aircraft and a paramotor. Each technique had shortcomings and advantages. While each technique provided estimations of turtle numbers only surveys by snorkel permitted identification of species and sex, whenever visibility and turtle behaviour permitted. Along the shorelines, and over foraging areas, the paramotor was found to be most suitable for direct estimations of turtle numbers. The major advantage of this technique lied in its capability to obtain a synoptic snapshot of turtle distribution over foraging areas. Linear surveys from a microlight aircraft are better suited to monitor foraging areas located further away from the shore.
Le suivi de l'abondance de tortues vertes (Chelonia mydas) est nécessaire pour évaluer l'évolution et éventuellement, le risque d'extinction des populations. L'objectif de cette expérience est de comparer trois techniques d'observation permettant l'évaluation directe de l'abondance totale de tortues vertes sur les aires d'alimentation (herbiers et platiers récifaux). L'étude a été conduite à l'île de Mayotte (ouest de l'océan Indien). Les techniques testées sont le comptage sous-marin et les comptages aériens à partir d'un ultra léger motorisé (ULM) et d'un paramoteur. Les limites de chaque technique utilisée ont été mises en évidence. L'abondance totale des tortues a été estimée par les trois techniques. Seuls, les comptages sous-marins ont permis de préciser des caractéristiques biologiques tels que l'espèce et le sexe, lorsque les conditions de visibilité et le comportement des tortues le permettaient. Le paramoteur paraît le plus adapté pour une estimation directe de l'abondance sur les aires d'alimentation situées à proximité immédiate de la côte. Cette technique permet de disposer d'un état de la répartition des tortues sur les aires d'alimentation à un moment donné. Pour les zones d'alimentation plus éloignées de la côte, l'usage de l'ULM est nécessaire pour réaliser les comptages à partir de transects linéaires.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005-04 , Vol. 18 , N. 2 , P. 193-198

Droits : EDP Sciences, IFREMER, IRD 2005
http://archimer.ifremer.fr/doc/2005/publication-432.pdf
DOI:10.1051/alr:2005021
http://archimer.ifremer.fr/doc/00000/432/

Résumé : Les mécanismes à l’origine du maintien de la forte diversité locale des arbres des forêts tropicales humides constituent encore une énigme pour les scientifiques. Cette thèse a pour but d’étudier et de comprendre certains facteurs biotiques et abiotiques qui influencent l’assemblage des communautés des forêts tropicales humides d’Amazonie. A l’aide d’une approche empirique conduite dans les forêts tropicales de Guyane française et du Loreto au Pérou, de nombreuses expériences de terrain ont été mises en place dans le but d’apporter des éléments de réponse sur les mécanismes impliqués dans le maintien de la diversité des communautés d’arbres et d’insectes des forêts amazoniennes. Dans un premier temps, cette thèse permet de souligner l’importance des pressions biotiques exercées sur les communautés d’arbres. En effet, les communautés d’insectes peuvent influencer la composition des communautés d’arbres le long d’un gradient environnemental conduisant à des compromis entre la défense et la croissance. Ces compromis ou tradeoff permettent de maintenir la coexistence des espèces de forêts tropicales humides en favorisant la spécialisation des arbres à leur habitat (Chapitre 1, Annexe 3). Cependant, de nombreux facteurs peuvent engendrer des variations dans les compromis d’allocation exhibés par les plantes, ce qui peut compliquer la validité de ces résultats. Dans ce sens, nous avons souligné l’influence du rôle de la cascade trophique et l’existence chez certaines espèces d’arbres de stratégies d’évitement des insectes (Chapitre 2). Dans un second temps, nous avons montré que les filtres environnementaux et les distances géographiques favorisent un fort turnover de la composition des arthropodes des forêts tropicales (chapitre 3, Annexe 2). Les résultats de cette étude ont des implications fondamentales sur les mécanismes qui expliquent la structuration des communautés d’insectes herbivores. Nous avons souligné l’importance de l’interaction des communautés des insectes herbivores et de leurs plantes associées. De plus, des prédictions sont présentées sur le degré de spécialisation des insectes à leur plante-hôte (Annexe 3), notamment sur les implications possibles dans les compromis d’allocation chez les plantes. Finalement, des perspectives de recherche sont proposées en vue de poursuivre ces travaux de recherche, et notamment des extensions de mes expériences vers d’autres régions tropicales et tempérées et l’intégration de la phylogénie pour comprendre des mécanismes de coévolution entre communautés d’arbres et insectes. Nous proposons également une intégration des résultats de cette thèse dans les stratégies locales et régionales de conservation des forêts tropicales du bassin amazonien.
The mechanisms underlying the maintenance of local diversity of trees in tropical rainforests remain under debate. This dissertation aims to study and understand some biotic and abiotic factors that may influence both tree and insect community assembly in lowland tropical forests of Amazonia. I used an empirical approach to study communities of trees and insects in tropical forests of French Guiana and Peru, to address the extent to which insect herbivores contribute to the turnover of tree species across strong environmental gradients. In Chapter 1, I studied how herbivorous insect communities can influence the composition of tree communities along an environmental gradient by reinforcing tradeoffs between defense and growth that promote habitat specialization (Chapter 1, Appendix 3). The complicated variation in the patterns of growth and defense from this study led me to pursue further observations of an alternative plant defense strategy of time-avoidance of herbivores, which I examined in detail in Chapter 2. I found evidence for coordinated leaf production in some tree species that was consistent with the satiation of herbivores, suggesting that multiple interactions between plants and their herbivores may be responsible for patterns of habitat specialization in trees. In the second part of the dissertation, I examined insect herbivore communities in detail to test for turnover in species composition across geographic and environmental gradients. In Chapter 3, I present evidence for substantial beta-diversity in arthropod communities throughout lowland Amazonian forests. In the discussion I propose research perspectives to complete this research, including the extension of observations to compare tropical and temperate regions and the integration of molecular phylogenetics information to study coevolution of plant lineages and their insect herbivores. I conclude with suggestions for the integration of the results of this thesis in local and regional strategies for the preservation and conservation of tropical forests in the Amazon basin.

http://www.theses.fr/2013AGUY0582/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Grey (Halichoerus grypus) and harbour seals (Phoca vitulina) are sympatric seal species, but they display distinct strategies of habitat use and connectivity between haulout sites. The distribution patterns and variations in relative abundance of both species were investigated along the French coast of the English Channel, at the southern limit of their range where seal numbers are increasing. Regular censuses conducted at all main haulout sites in mainland France showed significant seasonal variations at most sites, with more harbour seals counted during summer (breeding and moulting seasons), and more grey seals during summer only in the eastern English Channel. Trends in maximum haulout numbers at haulout sites showed a significant increase over the last five years, ranging from 9.7 to 30.9% per year for harbour seals, and from 5.8% (in the western English Channel) to 49.2% (in the eastern English Channel) per year for grey seals. These rates of increase in grey seal numbers are not linked to local pup production and most probably result from seal movements from the southwest British Isles and the North Sea, respectively. Aerial surveys conducted across the English Channel showed that most seal observations at sea were concentrated in the north-eastern English Channel. Telemetry showed that the 28 harbour seals tracked remained highly coastal, within a radius of 100 km from their haulout sites, and did not move to other known colonies. Grey seals moved much greater distances, reaching up to 1200 km from their capture site. More than half of the 45 grey seals tracked crossed the English Channel, especially during the breeding season, moving to known colonies in the southwest British Isles and the North Sea. Combining individual tracks and long-term surveys of the seal populations allowed a better understanding of the dynamics of these populations and their connectivity at a larger regional scale. The findings provide direct information for the management of grey and harbour seals within the frame of the Marine Strategy Framework Directive, and highlight focus areas where potential interactions between the two species should be monitored.
ISSN: 0967-0645

hal-01509674
https://hal.archives-ouvertes.fr/hal-01509674
DOI : 10.1016/j.dsr2.2017.04.004