Éditeur(s) : Université des Antilles Études caribéennes
Résumé : This study explores weather perceptions, evaluations and behavior of holiday-tourists to the French Caribbean island of La Martinique. Herein, the importance of selected weather parameters for a ‘typical’ summer holiday, for the choice that was made in coming to Martinique and for planned activities is examined. 32 snapshot interviews were held in two brief time periods within a month. Results illustrated slight differences in climate preferences for respondents depending whether they come from a cold or from a warm climate country, that activity patterns seemed overall little influenced by changing weather conditions and that the experienced weather, which was marked by heavy rains in the first data collection period and by changeable weather in the second, appeared to take only a limited impact on return intentions. Albeit the limited possibility of a pilot study to produce valid and reliable findings, variables and factors which are critical to consider when examining weather perceptions and behaviors have been pointed out and presented in a conceptual model for further research.
Cette étude explore les perceptions et les évaluations des conditions météorologiques et les comportements des vacanciers sur l'île de la Martinique. A ce sujet, l´étude examine l'influence de certains paramètres météorologiques sélectionnés sur des vacances d'été «typiques», sur le choix de la destination Martinique et sur les activités envisagées sur lieu. 32 interviews instantanées ont eu lieu en deux courtes périodes de temps pendant un mois. Les résultats illustraient qu´il y avait de légères différences concernant les préférences climatiques selon que les répondants venaient d'un pays au climat froid ou chaud, que les schémas d'activité semblaient généralement peu influencés par les changements météorologiques et que le temps - marquées par de fortes pluies dans la première période de la collecte de données et par un temps variable dans la seconde période - semblait n´avoir qu´un impact limité sur les intentions à revenir à la Martinique. Bien que l´étude pilote n´ait que des possibilités limitées de fournir des résultats valides et fiables, elle identifie les variables et les facteurs qui sont essentiels à considérer lors d´un projet de recherche qui examine la perception des conditions météorologiques par les touristes et les comportements qui en résultent. Ces facteurs sont présentés dans un modèle conceptuel.
Martinique

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5323
http://journals.openedition.org/etudescaribeennes/5323

Éditeur(s) : HAL CCSD MAIK Nauka/Interperiodica
Résumé : International audience
The paper is concerned with the kinematics of the major faults, their pattern, and the time of occurrence of compression and extension deformations in the southeast of the Eastern Sayan. The geometry of the mountain ranges and the kinematics of the major faults exhibit northeast-oriented compression responsible for the current processes of relief formation, which corresponds to the direction of the vector of deformations associated with the Indo-Asian collision. The results obtained thus far may be indicative of the remote influence of collision on the orogenic activity and transpressional deformations in the Eastern Sayan since the end of the Miocene. Morphotectonic analysis has shown that the areas of Quaternary extension- related deformations in the Eastern Sayan are not a response to active rifting in the Baikal Rift Zone. The position and geometry of the subsided blocks and magma ruptures point to the fact that they form locally as extension structural elements near the strike-slip faults. The strike-slip and thrust faults are widespread and play the leading role in the development of the southeastern part of the Eastern Sayan.
ISSN: 0016-8521

insu-00667345
https://hal-insu.archives-ouvertes.fr/insu-00667345
DOI : 10.1134/S001685211101002X

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This work combines structural and geochronological data to improve our understanding of the mechanical behaviour of continental crust involving large amount of magma or partially melted material in an abnormally hot collisional belt. We performed a magnetic and geochronological (U/Pb) study on a huge tonalitic batholith from the Neoproterozoic Araçuaí belt of East Brazil to determine the strain distribution through space and time. Anisotropy of magnetic susceptibility, combined with rock magnetism investigations, supports that the magnetic fabric is a good proxy of the structural fabric. Field measurements together with the magnetic fabrics highlight the presence in the batholith of four domains characterized by contrasted magmatic flow patterns. The western part is characterized by a gently dipping, orogen-parallel (∼NS) magmatic foliation that bears down-dip lineations, in agreement with westward thrusting onto the São Francisco craton. Eastward, the magmatic foliation progressively turns sub-vertical with a lineation that flips from sub-horizontal to sub-vertical over short distances. This latter domain involves an elongated corridor in which the magmatic foliation is sub-horizontal and bears an orogen-parallel lineation. Finally the fourth, narrow domain displays sub-horizontal lineations on a sub-vertical magmatic foliation oblique (∼N150°E) to the trend of the belt. U/Pb dating of zircons from the various domains revealed homogeneity in age for all samples. This, together with the lack of solid-state deformation suggests that: 1) the whole batholith emplaced during a magmatic event at ∼580 Ma, 2) the deformation occurred before complete solidification, and 3) the various fabrics are roughly contemporaneous. The complex structural pattern mapped in the studied tonalitic batholith suggests a 3D deformation of a slowly cooling, large magmatic body and its country rock. We suggest that the development of the observed 3D flow field was promoted by the low viscosity of the middle crust that turned gravitational force as an active tectonic force combining with the East-West convergence between the São Francisco and Congo cratons.
ISSN: 0191-8141

hal-00745696
https://hal.archives-ouvertes.fr/hal-00745696
DOI : 10.1016/j.jsg.2012.02.015

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Cette étude s’attache à rendre compte des difficultés auxquelles l’île de La Réunion est confrontée de longue date et qui ne trouvent, jusqu’à présent, aucune issue satisfaisante en termes de développement. De crises en conflits, récurrents dans leurs formes comme dans leurs schémas spatiaux, La Réunion demeure enfermée dans des impasses multiples, économiques et sociétales. Aucune issue réelle ne se dessine : la confusion des responsabilités perdure et permet à des schémas éculés, présentés comme des innovations, de se reproduire sans fin.
This study aims to realize the difficulties that the island of Reunion is facing a long time and without satisfactory outcome in terms of development. Crises to conflicts, recurring forms, as in their spatial patterns, Reunion remains locked in an impasse multiple, economic and societal. No actual outcome does is emerging: the responsibilities confusion continues and allows worn patterns, presented as innovations, reproduced endlessly.
Réunion

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.4930
http://journals.openedition.org/etudescaribeennes/4930

Éditeur(s) : HAL CCSD Elsevier
Résumé : Folds with hinge lines subparallel to stretching lineation are common features in shear zones and represent extreme cases of fold modification. However, their microstructures and in particular their kinematic significance remain poorly understood. Here we describe the meso- and micro-scale structures and crystallographic preferred orientation (CPO) of quartz and muscovite from a metric-scale shear-modified fold from Plattjen, Saas Fee, Western Internal Alps. The studied fold is of class-2 and the samples collected around the fold have essentially the same microstructures. Quartz [c]-axes plotted in the tectonic coordinate system exhibit an apparent reverse obliquity on opposing limbs. Muscovite fabrics are controlled essentially by the orientation of {001} planes. If the CPO data are plotted in a common reference frame (e.g. either fold or geographical), all samples exhibit essentially the same patterns for both minerals. In particular, relative to the fold axis and axial surface, the reversal of quartz CPO obliquity on opposing limbs is no longer evident. The small obliquity (~ 15°) between the intersection lineation of the two planes of {001} of muscovite and the fold axis results in the apparent reversal of shear sense on opposite limbs when viewing the CPO related to the macroscopic fabric. The homogeneity of the microstructures and CPOs of quartz and muscovite across the fold support the interpretation that the fold developed during simultaneous activation of heterogeneous and homogeneous simple shear, with the former responsible for fold development and the latter responsible for fold rotation and the overwhelming of the heterogeneous deformation. These processes led to the observed parallelism between fold hinge line and local stretching lineation.
ISSN: 0040-1951

hal-00824537
https://hal.archives-ouvertes.fr/hal-00824537
DOI : 10.1016/j.tecto.2011.03.003

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Mongolia represents the northernmost area affected by the India–Asia collision, and it is actively deformed along transpressive belts closely associated with large-scale strike-slip faults. The active and past mantle flow beneath this region is, however, poorly known. In order to investigate deep mantle deformation beneath central Mongolia and its relation with the surrounding major structures such as the Siberian craton, the Gobi–Altay belt and the Baikal rift, a NS-trending profile of broadband seismic stations has been deployed in the summer 2003 from the southern Siberian craton to the Gobi–Altay range, crossing the entire Hangay dome. Mantle flow is deduced from the splitting of teleseismic shear waves such as SKS phases. In eastern Mongolia, the permanent station ULN in Ulaanbaatar reveals the presence of two anisotropic layers, the upper one being oriented NE–SW, close to the trend of lithospheric structures and the lower one NW–SE, close to the trend of Eurasia absolute plate motion. Along the NS profile in central Mongolia, seismic anisotropy deduced from SKS splitting reveals a homogeneous NW–SE trending structure, fully consistent with the observations made in the Altay–Sayan in western Mongolia. The observed delay times of 1.5 to more than 2.0 s favor consistent mantle flow over large mantle thicknesses. Since the lithosphere is less than 100 km thick beneath central Mongolia and since the observed fast directions are parallel to the trend of the lithospheric structures but also close to the trend of the absolute plate motion, we propose that both the lithosphere and the asthenosphere may join their anisotropic effects beneath central Mongolia to explain the large delay times. Although GPS vectors represent the instantaneous displacement of the Earth's surface and SKS splitting the time and vertical integration of finite strain at depth, we use the opportunity of the dense geodetic measurements available in this region to discuss the anisotropy pattern in term of present-day deformation. In the Eurasia-fixed reference frame, GPS and SKS both depict a similar trend beneath central Mongolia, suggesting a lithospheric block “escaping” toward the east that could orient olivine a-axes in the upper mantle, within a transpressive tectonic regime. A different behaviour is observed in western Mongolia: the GPS vectors trend NS, close to the regional compression direction, whereas the fast SKS directions trend EW, suggesting a tectonic regime close to a mode of axial shortening, generating the development of an EW-trending foliation at depth. We therefore propose that Mongolia is a place where active and frozen lithospheric deformation may add their effects, together with the sublithospheric flow. In the three sources of anisotropy inferred, a fundamental role is played by the Siberian craton that acted as an undeformable core of the continent through time: the frozen Paleozoic and Mesozoic structures wrap around the craton, building up the fast anisotropic direction pattern; the present-day sublithospheric flow induced by the plate motion is likely deflecting around its deep roots; finally, the present-day tectonic regime appears to be controlled by the presence of the craton to the north.
ISSN: 0012-821X

hal-00407853
https://hal.archives-ouvertes.fr/hal-00407853
https://hal.archives-ouvertes.fr/hal-00407853/document
https://hal.archives-ouvertes.fr/hal-00407853/file/Barruol_SKS_Mongolia_EPSL2008_hal.pdf
DOI : 10.1016/j.epsl.2008.07.027

Éditeur(s) : HAL CCSD BMJ Publishing Group
Résumé : International audience
OBJECTIVE:To identify local meteorological drivers of dengue fever in French Guiana, we applied an original data mining method to the available epidemiological and climatic data. Through this work, we also assessed the contribution of the data mining method to the understanding of factors associated with the dissemination of infectious diseases and their spatiotemporal spread.METHODS:We applied contextual sequential pattern extraction techniques to epidemiological and meteorological data to identify the most significant climatic factors for dengue fever, and we investigated the relevance of the extracted patterns for the early warning of dengue outbreaks in French Guiana.RESULTS:The maximum temperature, minimum relative humidity, global brilliance, and cumulative rainfall were identified as determinants of dengue outbreaks, and the precise intervals of their values and variations were quantified according to the epidemiologic context. The strongest significant correlations were observed between dengue incidence and meteorological drivers after a 4-6-week lag.DISCUSSION:We demonstrated the use of contextual sequential patterns to better understand the determinants of the spatiotemporal spread of dengue fever in French Guiana. Future work should integrate additional variables and explore the notion of neighborhood for extracting sequential patterns.CONCLUSIONS:Dengue fever remains a major public health issue in French Guiana. The development of new methods to identify such specific characteristics becomes crucial in order to better understand and control spatiotemporal transmission.Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.
ISSN: 1067-5027

lirmm-01379072
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01379072
DOI : 10.1136/amiajnl-2013-002348
PUBMED : 24549761

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The Hedgehog (Hh) family of secreted proteins act as morphogens to control embryonic patterning and development in a variety of organ systems. Post-translational covalent attachment of cholesterol and palmitate to Hh proteins are critical for multimerization and long range signaling potency. However, the biological impact of lipid modifications on Hh ligand distribution and signal reception in humans remains unclear. In the present study, we report a unique case of autosomal recessive syndromic 46,XY Disorder of Sex Development (DSD) with testicular dysgenesis and chondrodysplasia resulting from a homozygous G287V missense mutation in the hedgehog acyl-transferase (HHAT) gene. This mutation occurred in the conserved membrane bound O-acyltransferase (MBOAT) domain and experimentally disrupted the ability of HHAT to palmitoylate Hh proteins such as DHH and SHH. Consistent with the patient phenotype, HHAT was found to be expressed in the somatic cells of both XX and XY gonads at the time of sex determination, and Hhat loss of function in mice recapitulates most of the testicular, skeletal, neuronal and growth defects observed in humans. In the developing testis, HHAT is not required for Sertoli cell commitment but plays a role in proper testis cord formation and the differentiation of fetal Leydig cells. Altogether, these results shed new light on the mechanisms of action of Hh proteins. Furthermore, they provide the first clinical evidence of the essential role played by lipid modification of Hh proteins in human testicular organogenesis and embryonic development.
ISSN: 1553-7390

hal-01063929
https://hal.archives-ouvertes.fr/hal-01063929
DOI : 10.1371/journal.pgen.1004340
PUBMED : 24784881

Éditeur(s) : HAL CCSD
Résumé : International audience
The advent of pen-based interfaces has led to the development of many applications concerning the analysis of a drawn shape. But a drawing is not only a shape. It is also all the gestures which constitutes the drawing activity, as well as their planning. Pen-based interfaces give us the possibility to analyze this dimension of sketching. We call this kind of analysis: procedural analysis. In this article, we will show how to identify the privileged drawing procedures of users by identifying a constant pattern despite a huge within-drawer variability in drawing procedures. After stating how to extract this constant pattern, we shall show how we can use those results into a drawing-based user identification method.
ICFHR 2012 - International Conference on Frontiers in Handwriting Recognition
Bari, Italy

hal-00708708
https://hal.inria.fr/hal-00708708

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Chromatin modification enzymes are important regulators of gene expression and some are evolutionarily conserved from yeast to human. Saccharomyces cerevisiae is a major model organism for genome-wide studies that aim at the identification of target genes under the control of conserved epigenetic regulators. Ume6 interacts with the upstream repressor site 1 (URS1) and represses transcription by recruiting both the conserved histone deacetylase Rpd3 (through the co-repressor Sin3) and the chromatin-remodeling factor Isw2. Cells lacking Ume6 are defective in growth, stress response, and meiotic development. RNA profiling studies and in vivo protein-DNA binding assays identified mRNAs or transcript isoforms that are directly repressed by Ume6 in mitosis. However, a comprehensive understanding of the transcriptional alterations, which underlie the complex ume6Δ mutant phenotype during fermentation, respiration, or sporulation, is lacking. We report the protein-coding transcriptome of a diploid MAT a/α wild-type and ume6/ume6 mutant strains cultured in rich media with glucose or acetate as a carbon source, or sporulation-inducing medium. We distinguished direct from indirect effects on mRNA levels by combining GeneChip data with URS1 motif predictions and published high-throughput in vivo Ume6-DNA binding data. To gain insight into the molecular interactions between successive waves of Ume6-dependent meiotic genes, we integrated expression data with information on protein networks. Our work identifies novel Ume6 repressed genes during growth and development and reveals a strong effect of the carbon source on the derepression pattern of transcripts in growing and developmentally arrested ume6/ume6 mutant cells. Since yeast is a useful model organism for chromatin-mediated effects on gene expression, our results provide a rich source for further genetic and molecular biological work on the regulation of cell growth and cell differentiation in eukaryotes.
ISSN: 1617-4615

hal-01151619
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01151619
DOI : 10.1007/s00438-015-1051-5
PUBMED : 25957495

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Terrane accretion and intraplate deformation are both common processes occurring during the assembly of large continental masses. The relative roles of these mechanisms are at the heart of a debate concerning the tectonic evolution of the Borborema Province, northeastern Brazil. In the Central subprovince, four terranes or domains have been proposed. In the Alto Moxotó domain, paragneiss of the Sertânia Complex were considered to record a distinct structural and geochronological evolution compared to those in the adjacent Rio Capibaribe domain, in the East. Here, we report the results of a geological study conducted in the type area of the Sertânia Complex. Kinematic criteria and metamorphic mineral assemblages indicate that the main foliation record top-to-the-W tectonic transport under upper amphibolite facies conditions (650–700 °C). The main foliation was affected by overturned folds and upright to inclined folds; the latter two formed coevally with the development of transcurrent shear zones. Samples of mafic orthogneiss and paragneiss tectonically intercalated in the same outcrop were dated by LA-ICP-MS. The orthogneiss sample yields a crystallization age of 1978 ± 8 Ma. Detrital zircons in the paragneiss sample show a multimodal pattern with a well-defined age peak at c. 700 Ma, showing that the paragneiss is younger than 700 Ma and so the main foliation is also younger than this age. In turn, these findings suggest that the occurrence of exclusively Paleoproterozoic zircons in three other dated samples of paragneiss cannot be used to accurately define the deposition age of the detritus. The structural and geochronological characteristics of the Sertânia Complex are similar to those of the Surubim Complex in the Rio Capibaribe domain. Together with previous results showing that the basement of the Alto Moxotó and Rio Capibaribe domains is also similar, we interpret these sequences as having been deposited on a once contiguous tract of continental crust. An accretionary terrane model is thus not required to account for the tectonic evolution of this portion of the Borborema Province. Instead, a model of intracontinental deformation of a preexistent continent is fully supported by the data and also by the lack of evidence for oceanic subduction.
ISSN: 0301-9268

hal-01622825
https://hal.archives-ouvertes.fr/hal-01622825
DOI : 10.1016/j.precamres.2017.07.006

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : The Caribbean has always been viewed as a tourist attraction for pleasure seeking individuals. Over several years, there has been evolved a rather intimate and interactive relationship between visitors and their hosts. The culmination of which is the rather romantic fascination of tourists toward locals in many Caribbean destinations. This is not a new phenomenon, as this pattern is one that evolved at the advent of tourism in the region. Economic and social factors are some of the competing contributors to this phenomenon.It would appear that with the increased influx of tourists in Caribbean destinations, that an astronomical increase in the reported cases of HIV/AIDS and other sexually related transmitted diseases are also witnessed. Trinidad and Tobago (T&T) is amongst the worst exposed in the Caribbean outside of the Dominican Republic and Haiti. Latest reports by the UNAIDS indicates that the number of reported cases in T&T has reached unprecedented levels (over 20,000 in 2009) and continues to increase. This study looks critically at the extent to which tourism and other related leisure activities including carnival, and the cultural diffusion it brings may be contributing to this epidemic. It is also hoped that this study will try to articulate possible suggestions to contain what is increasingly leading to a myriad of cultural, social and economic challenges for the country.
Les Caraïbes ont toujours exercé un attrait touristique sur les personnes en quête de plaisir. Depuis plusieurs années, il a été développé une relation plutôt intime et interactif entre les visiteurs et leurs hôtes dont le point culminant est la fascination plutôt romantique des touristes envers de nombreuses destinations dans les Caraïbes. Il ne s’agit pas d’un phénomène nouveau, ce phénomène repose sur des facteurs économiques et sociaux concurrents. Il convient de s’interroger sur les relations entre que l'afflux croissant de touristes dans ces destinations caribéennes et l'augmentation considérable des cas de VIH/sida et autres maladies sexuellement transmissibles. Trinité-et-Tobago (T & T) est l'une des destinations les plus exposées au sein de la Caraïbe. Les derniers rapports de l'ONUSIDA indiquent que le nombre de cas signalés de T & T a atteint des niveaux sans précédent (plus de 20.000 en 2009) et continue d'augmenter. Cette étude porte un regard critique sur les corrélations établies entre le tourisme et les autres activités de loisirs connexes, comme le carnaval, et la diffusion culturelle pourrait contribuer à cette épidémie. Cette étude vise à articuler des suggestions possibles pour répondre à la myriade de défis culturels, sociaux et économiques) à laquelle est exposé le pays.
Caraïbes
Trinité-et-Tobago

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5314
http://journals.openedition.org/etudescaribeennes/5314

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
The dynamic model of plant growth GreenLab describes plant architecture and functional growth at the level of individual organs. Structural development is controlled by formal grammars and empirical equations compute the amount of biomass produced by the plant, and its partitioning among the growing organs, such as leaves, stems and fruits. The number of organs initiated at each time step depends on the trophic state of the plant, which is evaluated by the ratio of biomass available in plant to the demand of all the organs. The control of the plant organogenesis by this variable induces oscillations in the simulated plant behaviour. The mathematical framework of the GreenLab model allows to compute the conditions for the generation of oscillations and the value of the period according to the set of parameters. Two case-studies are presented, corresponding to emergence of oscillations associated to fructification and branching. Similar alternating patterns are commonly reported by botanists. In this article, two examples were selected: alternate patterns of fruits in cucumber plants and alternate appearances of branches in Cecropia trees. The model was calibrated from experimental data collected on these plants. It shows that a simple feedback hypothesis of trophic control on plant structure allows the emergence of cyclic patterns corresponding to the observed ones.
ISSN: 0973-5348

hal-00780592
https://hal-ecp.archives-ouvertes.fr/hal-00780592
https://hal-ecp.archives-ouvertes.fr/hal-00780592/document
https://hal-ecp.archives-ouvertes.fr/hal-00780592/file/Mathieu_2012_Published_mmnp201276p47.pdf
DOI : 10.1051/mmnp/20127603

Éditeur(s) : HAL CCSD SpringerLink
Résumé : The development of microsatellite markers can be a time-consuming process, especially in species such as conifers where many microsatellites have been shown to be associated with the repetitive fraction of the genome and to produce complex banding patterns following electrophoresis. Therefore, procedures to eliminate this fraction from further processing are sought. In this paper, we report on the development of 53 dinucleotide SSR markers in Norway spruce, 35 of which (66%) produce simple, polymorphic patterns. This high efficiency is obtained by introducing a dot-blot selection against high copy number sequences, performed on the microsatellite-containing clones. The resulting markers turned out to be polymorphic and useful for population genetic studies and for linkage mapping. Seven additional markers that were not subject to the dot-blot selection are also presented.
Theoretical and Applied Genetics

hal-01031865
https://hal.archives-ouvertes.fr/hal-01031865
DOI : 10.1007/s00122-001-0843-7

Éditeur(s) : Elsevier
Résumé : Shrimp farming is a small but growing industry in New Caledonia. Since 1993, "Syndrome 93" has been affecting New Caledonian shrimp farming industry every cold season, causing severe epizootic mortalities in grow-out ponds and significant losses. Highly pathogenic strains of Vibrio penaeicida are considered the etiological agent of the disease in Litopenaeus stylirostris. On one hand, studies demonstrated that healthy shrimp may carry V penaeicida for weeks with a high overall prevalence, regardless of any seasonal pattern or temperature conditions. On the other hand, larvae are free of V penaeicida and are also resistant to experimental infection. V penaeicida is frequently detected in incoming water pumped from the bays, which was shown, by a molecular typing study, to be the infectious source. This particular epidemiological pattern highlights the major role of the factors that trigger and aggravate the disease in grow-out ponds, where shrimp populations carry the pathogen all year round. In order to gain a better understanding of "Syndrome 93" epidemiology, quantification of V penaeicida both in shrimp and the shrimp farm ecosystem is necessary. This article describes the steps in the successful development of a real-time PCR quantification assay of V penaeicida in shrimp haemolymph, seawater (from ponds or bays) and sediment pore water, including the choice of an accurate extraction technique. The entire detection method; including sample processing, DNA extraction and real-time PCR amplification, can be completed within 4 h. (c) 2006 Elsevier B.V All rights reserved.
Journal of Microbiological Methods (0167-7012) (Elsevier), 2006-10 , Vol. 67 , N. 1 , P. 27-35

Droits : 2006 Elsevier
http://archimer.ifremer.fr/doc/2006/publication-1903.pdf
DOI:10.1016/j.mimet.2006.02.013
http://archimer.ifremer.fr/doc/00000/1903/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Signalling through the Wnt family of secreted proteins originated in a common metazoan ancestor and greatly influenced the evolution of animal body plans. In bilaterians, Wnt signalling plays multiple fundamental roles during embryonic development and in adult tissues, notably in axial patterning, neural development and stem cell regulation. Studies in various cnidarian species have particularly highlighted the evolutionarily conserved role of the Wnt/b-catenin pathway in specification and patterning of the primary embryonic axis. However in another key non-bilaterian phylum, Ctenophora, Wnts are not involved in early establishment of the body axis during embryogenesis. We analysed the expression in the adult of the ctenophore Pleurobrachia pileus of 11 orthologues of Wnt signalling genes including all ctenophore Wnt ligands and Fz receptors and several members of the intracellular b-catenin pathway machinery. All genes are strongly expressed around the mouth margin at the oral pole, evoking the Wnt oral centre of cnidarians. This observation is consistent with primary axis polarisation by the Wnts being a universal metazoan feature, secondarily lost in ctenophores during early development but retained in the adult. In addition, local expression of Wnt signalling genes was seen in various anatomical structures of the body including in the locomotory comb rows, where their complex deployment suggests control by the Wnts of local comb polarity. Other important contexts of Wnt involvement which probably evolved before the ctenophore/ cnidarian/bilaterian split include proliferating stem cells and progenitors irrespective of cell types, and developing as well as differentiated neuro-sensory structures.
ISSN: 1932-6203

hal-01544483
https://hal.archives-ouvertes.fr/hal-01544483
DOI : 10.1371/journal.pone.0084363

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : In this paper we study merosity in the genus Urospatha within the framework of a resolved phylogeny of the Araceae. We analyse how a transition from dimerous or tetramerous merosity to pentamerous or hexamerous merosity can occur developmentally in the Lasioideae. In Urospatha, initiation of floral primordia along the inflorescence is acropetal, while development of flowers is basipetal. This indicates the presence of two distinct phases in the development of the Urospatha inflorescence. The first phase corresponds to initiation of flowers and establishment of the phyllotactic pattern, and the second phase to differentiation of floral organs. Urospatha is characterized by the presence of trimerous, tetramerous, pentamerous and rarely hexamerous flowers. In all types of flowers, the stamens are closely associated and opposite to the tepals. Pentamerous flowers are formed by addition of a sector comprising a stamen and tepal. Likewise, in the case of hexamerous flowers, two sectors are added. In the Lasioideae, the increase in the number of tepals and stamens is linked with two developmental processes that have appeared independently in the subfamily: (1) addition of one or two stamen-petal sectors (Anaphyllopsis and Urospatha), and (2) independent increase in the number of tepals and stamens on whorls, more or less organized and inserted in alternate position (Dracontium). Tetramerous whorls as they occur in basal Lasioideae would be homologous to two dimerous whorls from an evolutionary point of view.
ISSN: 0378-2697

hal-01019867
https://hal.archives-ouvertes.fr/hal-01019867
DOI : 10.1007/s00606-011-0475-6

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Climate may act on the dispersal and connectivity of marine populations through changes in the oceanic circulation and temperature, and by modifying species' prey and predator distributions. As dispersal and connectivity remain difficult to assess in situ, a first step in studying the effects of climate change can be achieved using biophysical models. To date, only a few biophysical models have been used for this purpose. Here we review these studies and also include results from other recent modelling efforts. We show that increased sea temperature, a major change expected under climate warming, may impact dispersal and connectivity patterns via changes in reproductive phenology (e.g., shift in the spawning season), transport (e.g., reduced pelagic larval duration under faster development rates), mortality (e.g., changes in the exposure to lethal temperatures), and behaviour (e.g.. increased larval swimming speed). Projected changes in circulation are also shown to have large effects on the simulated dispersal and connectivity patterns. Although these biophysical modelling studies are useful preliminary approaches to project the potential effects of climate change, we highlight their current limitations and discuss the way forward, in particular the need for adequate coupled hydrodynamic-biogeochemical simulations using atmospheric forcing from realistic climate change scenarios. (C) 2010 Elsevier Ltd. All rights reserved.
Progress In Oceanography (0079-6611) (Pergamon-elsevier Science Ltd), 2010-10 , Vol. 87 , N. 1-4 , P. 106-113

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00031/14176/11522.pdf
DOI:10.1016/j.pocean.2010.09.005
http://archimer.ifremer.fr/doc/00031/14176/

Éditeur(s) : Elsevier
Résumé : During the SEDIFAN 1 cruise we surveyed the bathymetry and the acoustic properties of the surface sediment of the Celtic Deep Sea Fan. We also collected Kullenberg cores in order to study recent sedimentary processes. From the bathymetry survey it is relatively easy to recognize the main areas of modern fan. The upper fan included a large sedimentary ridge which constitutes the right levee of the prominent meandering Whittard valley. After its confluence with the Shamrock valley the course of the Whittard valley is abruptly deflected to the south. At a short distance to the south the valley divides into two upper-fan channels, the Celtic channel to the west being the deeper one. This point constitutes the centre of a radiating pattern which is developed on a 150 degrees quadrant and a radius of about 100 km. The acoustic imagery displays contrasted features, related to change in lithology within the first metre beneath the sea bottom and to the sea floor roughness. The Austell ridge exhibits a contrasted pattern of elongated areas with high and low acoustic backscattering levels. This pattern is related to the development of abyssal dunes, the amplitude of which is of metric order. Particularly remarkable is a lobe-shaped low back-scattering area in the western part of the middle fan, also noteworthy are a lineated facies to the west and a braided facies to the east of the fan. The laminated silty-clayey sequences deposited on the Whittard ridge and on the Trevelyan levee were deposited during the deglaciation. We interpret these as turbidity currents overflow deposits from the Whittard valley. At the end of isotopic stage 3 and during stage 2, the English Channel was a large plain flooded by the Channel River. During this period a broad delta developed at 100 m below the present-day depth and a wide spectrum of material was bound to be supplied to the deep sea and contributed particularly to the deposition of the Whittard ridge silty-clayey sequences. The stage 2 deposits are characterized by rhythmic levels enriched in monosulfides. These types of deposits are common in areas affected by fluvial discharges. Excluding the sedimentary ridge and the channel levees the surface deposits sampled with the Kullenberg corer are sandy. These sands are deposited in various contexts on the interfluve between the western and eastern channels and at channel mouths. They were emplaced during high sea level stands as a result of high energy gravity processes. The precise sources of these sands have not yet been identified, however benthic foraminifers from included ooze pebbles have living depths of between 500 and 1 000 m. The gravity processes which eroded this marry ooze may have been triggered on the upper slope. The Celtic shelf is presently a high energy platform where the conjunction of storms and spring tides call lead to enhanced sediment transport from near-shore to the deep sea. The relict or palimpsest deposits of the glacial delta also constitute a large reservoir of sandy material which can also be subject to reworking.
Le programme Enam 2 (European North Atlantic Margin) concerne l'étude des processus sédimentaires quaternaires du Spitzberg au golfe de Gascogne. Dans le cadre de ce programme, la reconnaissance de l'Éventail profond celtique était l'objectif de la campagne Sedifan 1 au cours de laquelle nous avons établi la morphologie de l'éventail et obtenu une image acoustique des fonds sédimentaires. La morphologie permet de mettre en évidence une organisation en éventail. On note aussi le développement remarquable d'une ride sédimentaire au niveau de l'éventail supérieur. Les sédiments prélevés révèlent la présence de dépôts sableux, témoins d'une activité récente qui pourrait être liée à l'importance de l'hydrodynamisme sur les Grands Bancs de la plate-forme celtique.
Oceanologica Acta (0399-1784) (Elsevier), 2000 , Vol. 23 , N. 1 , P. 109-116

Droits : 2000 Ifremer/CNRS/IRD/Editions scientifiques et medicales Elsevier SAS
http://archimer.ifremer.fr/doc/2000/publication-525.pdf
DOI:10.1016/S0399-1784(00)00116-X
http://archimer.ifremer.fr/doc/00000/525/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The contourite depositional system (CDS) along the southwestern Iberian Margin (SIM), within the Gulf of Cadiz and offshore areas of western Portugal bear the unmistakable signal of Mediterranean Outflow Water (MOW) exiting the Strait of Gibraltar. This locality records key information concerning the effects of tectonic activity on margin sedimentation, the effects of MOW dynamics on Atlantic circulation, and how these factors may have influenced global climate. Over the last four decades, numerous studies have been conducted on the late Miocene, Pliocene and Quaternary sedimentary stacking pattern of Neogene basins along the SIM for both academic and resources exploration purposes. However, understanding of the region rests primarily on basic seismic stratigraphy calibrated with limited data from only a few exploration wells. The Integrated Ocean Drilling Program (IODP) Expedition 339 recently drilled five sites in the Gulf of Cadiz and two sites on the western Iberian margin. The integration of core and borehole data with other geophysical databases leads us to propose a new stratigraphic framework. Interpretation of IODP Exp. 339 data along with that from industry sources and onshore outcrop analysis helps refine our understanding of the SIM's sedimentary evolution.We identify significant changes in sedimentation style and dominant sedimentary processes, coupled with widespread depositional hiatuses along the SIM within the Cadiz, Sanlucar, Doñana, Algarve and Alentejo basins. Following the 4.5 Ma cessation of a previous phase of tectonic activity related to the Miocene–Pliocene boundary, tectonics continued to influence margin development, downslope sediment transport and CDS evolution. Sedimentary features indicate tectonic pulses of about 0.8–0.9 Ma duration with a pronounced overprint of ~ 2–2.5 Ma cycles. These more protracted cycles relate to the westward rollback of subducted lithosphere at the convergent Africa-Eurasia plate boundary as its previous NW–SE compressional regime shifted to a WNW–ESE direction. Two major compressional events affecting to the Neogene basins at 3.2–3 Ma and 2–2.3 Ma help constrain the three main stages of CDS evolution. The stages include: 1) the initial-drift stage (5.33–3.2 Ma) with a weak MOW, 2) a transitional-drift stage (3.2–2 Ma) and 3) a growth-drift stage (2 Ma-present time) with enhanced MOW circulation into the Atlantic and associated contourite development due to greater bottom-current velocity. Two minor Pleistocene discontinuities at 0.7–0.9 Ma and 0.3–0.6 Ma record the effects of renewed tectonic activity on basin evolution, appearing most prominently in the Doñana basin. Several discontinuities bounding major and minor units appear on seismic profiles. Quaternary records offer the clearest example of this, with major units of about 0.8–0.9 Ma and sub-units of 0.4–0.5 Ma. Sedimentation is controlled by a combination of tectonics, sediment supply, sea-level and climate. This research identifies time scales of tectonic controls on deep-marine sedimentation, specifically over periods of 2.5–> 0.4 Ma. Shorter-term climatic (orbital) mechanisms control sedimentation at time scales of ≤ 0.4 Ma. The role of bottom water circulation and associated processes in shaping the seafloor and controlling the sedimentary stacking pattern on continental margins has to be seriously reconsidered in future multidisciplinary studies. This is not only because of the common occurrence of sandy contourite deposits in deep water setting and their economic interest for hydrocarbon exploration, but principally because they archive the heartbeat of the interior Earth and therefore have important sedimentary and paleoceanographic implications.
ISSN: 0025-3227

hal-01356166
https://hal.archives-ouvertes.fr/hal-01356166
DOI : 10.1016/j.margeo.2015.09.013