Éditeur(s) : HAL CCSD Royal Society of Chemistry
Résumé : International audience
A full equilibrium treatment of molecular aggregation is presented for prototypes of 1D and 3D aggregates, with and without nucleation. By skipping complex kinetic parameters like aggregate size-dependent diffusion, the equilibrium treatment allows to predict directly time-independent quantities such as critical concentrations. The relationships between the macroscopic equilibrium constants for the different paths are first established by statistical corrections and so as to comply with the detailed balance constraints imposed by nucleation, and the composition of the mixture resulting from homogeneous aggregation is then analyzed using the polylogarithm function. Several critical concentrations are distinguished: the residual monomer concentation in equilibrium (RMC) and the critical nucleation concentration (CNC), that is the threshold concentration of total subunits necessary for initiating aggregation. When increasing the concentration of total subunits, the RMC converges more strongly to its asymptotic value, the equilibrium constant of depolymerization, for 3D aggregates and in case of nucleation. The CNC moderately depends on the number of subunits in the nucleus, but sharply increases with the difference between the equilibrium constants of polymerization and nucleation. As the RMC and CNC can be numerically but not analytically determined, ansatz equations connecting them to thermodynamic parameters are proposed
PCCP : Physical chemistry chemical physics

Droits : info:eu-repo/semantics/OpenAccess
hal-01565995
https://hal.archives-ouvertes.fr/hal-01565995
https://hal.archives-ouvertes.fr/hal-01565995/document
https://hal.archives-ouvertes.fr/hal-01565995/file/Aggregates_in_equilibrium.pdf
DOI : 10.1039/c6cp08369b

Éditeur(s) : HAL CCSD
Résumé : To understand the effect of inherited lithospheric structures on the continental plates deformation process, we have developed a multi scale model that explicitly takes into account an anisotropic viscosity due to the Crystal Preferred Orientation (CPO) of olivine in the mantle by coupling a viscoplastic self-consistent simulation of the deformation at the polycrystalline aggregate to a 3D Finite Element code. Using this tool, we calculate the mechanical behavior of a continental lithosphere submitted to extension for various initial structures. The first set of experiments investigates the deformation of a plate with a homogeneous initial olivine CPO. Results show that the macroscopic anisotropy is strongly dependent on the initial orientation of the olivine CPO relative to the solicitation and to its evolution. The second set of experiments aims to analyze the deformation of a continental plate containing pre-existing lithospheric scale shear zones. These multi-domain models show that the olivine mechanical anisotropy may induce the reactivation of pre-existing lithospheric scale shear zones in a plate submitted to rifting. In both cases, the results shows that the macroscopic mechanic anisotropy induced by the evolution of olivine CPO in the upper mantle is a key parameter to understand the deformation of the continental plates and to explain the observed reactivation of inherited structure from past tectonics events
Afin de comprendre l'effet des structures préexistantes sur la déformation des plaques continentales, nous avons développé une méthode de modélisation mécanique multi-échelle utilisant une viscosité anisotrope induite par les Orientations Préférentielles du Réseau (OPR) des cristaux d'olivine présents dans le manteau. Cette méthode en couple le calcul viscoplastique autocohérent de la déformation d'un agrégat d'olivine à un code éléments finis 3D. Elle a été utilisée pour le calcul du comportement mécanique d'une plaque continentale soumise à une extension. Une première série d'expériences numériques sur l'extension de plaque lithosphérique présentant des OPR initiales d'olivine homogènes a permis de montrer que l'anisotropie mécanique macroscopique est fortement dépendante de l'orientation initiale de l'OPR. La seconde série de simulations analyse l'extension d'une plaque continentale présentant une zone présentant des OPR d'olivine héritées d'un événement tectonique précédant. Les résultats de ces calculs multi-domaines que l'anisotropie mécanique de l'olivine peut expliquer la réactivation des zones de cisaillement héritées lors du rifting. Les résultats obtenus dans les deux séries de modèles montrent que l'anisotropie mécanique macroscopique induite par l'évolution des OPR d'olivine dans le manteau supérieur est un paramètre clé pour la compréhension de la déformation des plaques continentales et pour expliquer la réactivation observée de structures tectoniques, tels que les grands décrochements, lors des épisodes tectoniques ultérieurs.
https://tel.archives-ouvertes.fr/tel-00369463

tel-00369463
https://tel.archives-ouvertes.fr/tel-00369463
https://tel.archives-ouvertes.fr/tel-00369463/document
https://tel.archives-ouvertes.fr/tel-00369463/file/KnollThese09.pdf

Résumé : L’arc des Petites Antilles résulte de la lente subduction vers l'Ouest des plaques Nord et Sud-Américaines sous la plaque Caraïbes (2cm/an). A la latitude de l’archipel guadeloupéen et à ~150 km à l’Ouest du front de déformation, le bassin d'avant-arc de Marie-Galante forme un bassin perché, incliné vers la fosse et limité vers l’Est par un haut-fond, l’Eperon Karukéra. À cette latitude, le bassin de Marie-Galante domine le prisme d’accrétion de la Barbade et fait face à la ride de Tiburon qui balaye la zone du Nord au Sud depuis la fin du Miocène supérieur. Le remplissage sédimentaire du Bassin de Marie-Galante montre des déformations actives au moins depuis ~30 millions d’années. L’objectif du travail est de reconstituer l’évolution tectono-sédimentaire de ce bassin pour apporter de nouvelles contraintes sur la compréhension globale de la zone de subduction frontale des Petites Antilles. Ce travail s'appuie sur les données de bathymétrie multifaisceaux et de sismique réflexion multi-traces haute résolution acquises lors des campagnes du programme KaShallow. Cette base de données, complétée de profils sismiques plus basse résolution de campagnes antérieures, permet d’avoir une couverture pseudo 3D et à quatre échelles de résolution de l'ensemble du bassin. Un échantillonnage par ROV et carottage ciblé a fourni 40 prélèvements dans les principales unités sismiques. Les analyses pétrologiques et les datations biostratigraphiques autorisent des reconstitutions paléo-environnementales depuis le Paléogène supérieur jusqu’à Actuel. L’interprétation sismique multi-échelle montre un bassin sédimentaire atteignant ~4,5s temps double (~4500 à 5625 m) sur un substratum magmatique pré-structuré. Ce bassin est composé de 5 grands ensembles sédimentaires (E-1, E1, E2, E3 et E4) subdivisés en 13 unités limitées par 14 surfaces de discontinuités. L’organisation séquentielle des unités sismiques permet de mettre en évidence 10 séquences de dépôts de troisièmes ordres (S-1 à S9). Le calage biostratigraphique de l’ensemble des séquences permet de proposer une évolution tectono-sédimentaire du bassin de l’Éocène à l’Actuel. Ainsi, nous distinguons quatre systèmes de failles normales associées à trois phases d’extensions qui contrôlent l’évolution architecturale et sédimentaire du bassin. 1/ Un système N050±10°E hérité, actif dès le Paléogène supérieur, qui contrôle le basculement général du bassin vers le SSE. Il est responsable de la formation de l'escarpement de Désirade d’environ 4500 m de dénivelé. Cette première extension est interprétée comme résultant de la fragmentation de l'avant-arc en réponse à l'augmentation du rayon de courbure de la zone de subduction. 2/ Un système N130°-N150°E, structurant à l’échelle de l’Éperon Karukéra, qui contrôle la sédimentation dès le Miocène inférieur et marque une première phase d'extension transverse à l’arc. 3/ Un système N160°-N180°E qui segmente le Bassin de Marie-Galante en un sous-bassin à l'Ouest et l'Éperon Karukéra à l'Est. Cette seconde extension, globalement perpendiculaire à la marge, s'accompagne d’une subsidence et d'une inversion de la polarité du bassin en réponse à son basculement vers la fosse qui débute au cours du Miocène moyen et se poursuit actuellement à l'Est du bassin. Cette évolution à long terme de l'avant-arc, concomitante avec le recul de l'arc volcanique vers l’Ouest, est considérée comme résultant d’une érosion basale de la plaque supérieure. 4/ Un système N090±10°E plus tardif est localisé au centre du bassin et qui contrôle le développement de plates-formes carbonatées néritiques sur certaines têtes de blocs, comme par exemple à Marie-Galante. Cette dernière extension, parallèle à l’arc, se manifeste dans le bassin à partir du Pliocène inférieur. Elle se superpose au régime d'extension perpendiculaire à l'avant-arc et est interprétée comme l'accommodation du partitionnement de la déformation en réponse à l’obliquité croissante du front subduction vers le Nord.
The Lesser Antilles result of the slow westward subduction of the North and South American plate under the Caribbean plate (2 cm / year). At the latitude of the Guadeloupe archipelago and ~ 150 km to the west of the deformation front, the fore-arc basin of Marie-Galante forms a perched basin tilted to the pit and limited to the East by a shoal, the Spur Karukéra. At this latitude, Marie-Galante basin dominates the accretionary prism of Barbados and faces wrinkle Tiburon sweeping the area from North to South from the late Miocene. The sedimentary fill Basin Marie-Galante shows active deformation since at least ~ 30 million years. The aim of the work is to reconstruct the tectono-sedimentary evolution of the basin to provide new constraints on the overall understanding of the frontal subduction zone Lesser Antilles. This work relies on multibeam bathymetry data and high-resolution seismic reflection multi-traces acquired during campaigns KaShallow program. This database, supplemented by lower resolution of previous campaigns seismic profiles, provides a pseudo-3D coverage and four scales of resolution of the entire basin. ROV sampling and targeted core provided 40 samples in the main seismic units. Petrological analysis and biostratigraphic dating allow paleoenvironmental reconstructions from the upper Paleogene up Actuel. Seismic interpretation multiscale shows a sedimentary basin reaching ~ 4,5s double (~ 4500-5625 m) on a substrate pre-structured magma. This basin consists of 5 main sedimentary units (E-1, E1, E2, E3 and E4) divided into 13 units bounded by discontinuities 14 surfaces. The sequential organization of seismic units allows to highlight sequences 10 deposits of third order (S-1 to S9). The biostratigraphic calibration of all sequences able to offer a tectono-sedimentary evolution of the Eocene basin to Present. Thus, we distinguish four normal fault systems associated with three phases of extensions that control the architectural and sedimentary evolution of the basin. 1 / A system N050 ± 10 ° E inherited assets from the upper Paleogene, which controls the overall pelvic tilt towards the SSE. He is responsible for the formation of the escarpment Désirade about 4500 m elevation. The first extension is interpreted as resulting from the fragmentation of the fore-arc in response to the increase in the radius of curvature of subduction. 2 / A system N130 ° -N150 ° E, structuring across the Spur Karukéra, which controls sediment from the Miocene and marks the first phase of transverse extension arc. 3 / A system N160 ° E ° -N180 which segments Basin Marie-Galante in a sub-basin to the west and the Spur Karukéra in the East. This second extension, generally perpendicular to the margin, is accompanied by subsidence and reversing the polarity of the basin in response to his switch to the pit, beginning during the Middle Miocene and is ongoing in the East the basin. This long-term evolution of the forearc, concurrent with the decline in volcanic arc to the west, is considered as resulting from a basal erosion of the top plate. 4 / A system N090 ± 10 ° later E is located in the center of the basin and controlling the development of neritic carbonate platforms on certain blocks heads, such as Marie-Galante. This latest extension, parallel to the arc occurs in the basin from the lower Pliocene. It is superimposed on the expansion plan perpendicular to the fore-arc and is interpreted as the accommodation of the partitioning of deformation in response to the increasing obliquity front subduction north.

http://www.theses.fr/2014AGUY0799/document

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In this paper we investigate finite-frequency effects in crustal tomography. We developed an inversion procedure based on an exact numerical computation of the sensitivity kernels. In this approach we compute the 3D travel-time sensitivity kernels by using (1) graph theory and an additional bending to estimate accurately both rays and travel-times between source/receiver and diffraction points and (2) paraxial ray theory to estimate the amplitude along theses rays. We invert both the velocity and the hypocentre parameters, using these so-called banana-doughnut kernels and the LSQR iterative solver. We compare the ray-theoretical and the finite-frequency tomography to image the intermediate structures beneath the Gulf of Corinth (Greece), which has long been recognized as the most active continental rifting zone in the Mediterranean region. Our dataset consists of 451 local events with 9233 P- firstarrival times recorded in the western part of the Gulf (Aigion area) in the framework of the 3F-Corinth European project. Previous tomographic images showed a complex velocity crustal model and a low-dip surface that may accommodate the deformation. Accurate velocity models will help to better constrain the rifting process, which is still a subject of debate. The main results of this study show that finite-frequency tomography improves crustal tomographic images by providing better resolved images of the 3D complicated velocity structure. Because the kernels spread the information over a volume, finite-frequency tomography results in a sharpening of layer boundaries as we observed for the shallower part of the crust (down to 5 km depth) beneath the Gulf of Corinth.
ISSN: 0016-8025

insu-00354702
https://hal-insu.archives-ouvertes.fr/insu-00354702
DOI : 10.1111/j.1365-2478.2007.00683.x

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Past earthquake slips on faults are commonly determined by measuring morphological offsets at current ground surface. Because those offsets might not always be well preserved, we examine whether the first 10 m below ground surface contains relevant information to complement them. We focus on the Te Marua site, New Zealand, where 11 alluvial terraces have been dextrally offset by the Wellington fault. We investigated the site using pseudo-3D Ground Penetrating Radar and also produced a high-resolution digital elevation model (DEM) of the zone to constrain the surface slip record. The GPR data reveal additional information: (1) they image the 3D stratigraphic architecture of the seven youngest terraces and show that they are strath terraces carved into graywacke bedrock. Each strath surface is overlain by 3-5 m of horizontally bedded gravel sheets, including two pronounced and traceable reflectors; (2) thanks to the multilayer architecture, terrace risers and channels are imaged at three depths and their lateral offsets can be measured three to four times, constraining respective offsets and their uncertainties more reliably; and (3) the offsets are better preserved in the subsurface than at the ground surface, likely due to subsequent erosion-deposition on the latter. From surface and subsurface data, we infer that Te Marua has recorded six cumulative offsets of 2.9, 7.6, 18, 23.2, 26, and 31 m (± 1-2 m). Large earthquakes on southern Wellington fault might produce 3-5 m of slip, slightly less than previously proposed. Pseudo-3D GPR thus provides a novel paleoseismological tool to complement and refine surface investigations
ISSN: 2169-9313

hal-00873350
https://hal.archives-ouvertes.fr/hal-00873350
DOI : 10.1002/jgrb.50317

Éditeur(s) : HAL CCSD Elsevier
Résumé : We present the hierarchical matrix (H-matrix) technique combined with the adaptive cross-approximation (ACA) applied to a three-dimensional (3D) elastostatic problem using the boundary element method (BEM). This is used in structural geology and geomechanics for the evaluation of the deformation and perturbed stress field associated with surfaces of displacement discontinuity. Such optimization significantly reduces (i) the time and memory needed for the resolution of the system of equations, but more importantly (ii) the time needed for the post-processing at observation points where the deformation and the perturbed stress field are evaluated. Specifically, it is shown that the H-matrix structure used with the ACA, clearly captures the kernel smoothness during the post-processing stage according to the field point positions, and optimizes the computation accordingly. Combined with the parallelization on multi-core processors, this technique allows intensive computations to be done on personal desktop and laptop computers. Numerical simulations are presented, showing the advantages of such optimizations compared to the standard method.
ISSN: 0955-7997

hal-00561032
https://hal.archives-ouvertes.fr/hal-00561032
DOI : 10.1016/j.enganabound.2009.10.016

Résumé : 3D modelling of the fishing gear flume tank at IFREMER's Lorient site Within the framework of their training, it is suggested that students in their first year of the "Industrial Product Design" BTS (vocational training certificate) at the Colbert de Lorent school participate in an internship in order to put into practice their acquired skills and to familiarise themselves with the work environment. Erwan Davigo did his internship at IFREMER's Lorient station, in the Fishing Technology department, from 18 May 1998 to 26 June 1998 (placement supervisor: Gérard Bavouzet). The study topic focuses on modelling the Lorient station's test basin in three dimensions, thus making it possible to complete the documentation base. IFREMER is presented in its entirety in the first part of the report. The second part explains the work performed.
Dans le cadre de leur formation, il est proposé aux étudiants de première année de BTS « Conception de Produits Industriels » du lycée Colbert de Lorient d'effectuer un stage afin de mettre en pratique les connaissances acquises et de se familiariser avec le monde du travail. Erwan Davigo a fait son stage à la station IFREMER de Lorient, au sein du service Technologie des Pêches, du 18 mai 1998 au 26 juin 1998 (maître de stage : Gérard Bavouzet). Le sujet d'étude porte sur la modélisation en trois dimensions du bassin d'essais de la station de Lorient, permettant ainsi de compléter la base documentaire. L' IFREMER est présenté dans son ensemble dans la première partie du rapport. La seconde partie expose le travail réalisé

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1999/rapport-2650.pdf
http://archimer.ifremer.fr/doc/00000/2650/

Éditeur(s) : HAL CCSD
Résumé : Annual report
We present here the results of CRS reprocessing of a 3D real dataset acquired in 2001 on the Tournemire site in France, which is an experimental site for the Institut de Radioprotection et de Sûreté Nucléaire (IRSN) to test geophysical imaging process in the context of geological nuclear waste storage. The main objective was to evaluate the ability of the methodology to recognize, in the carbonate cover of the experimental site clay layer, the prolongation of weak vertical-displacement faults seen in a tunnel within that clay layer. Previous seismic processing using the conventional common midpoint (CMP) approach did not provide satisfactory results in this cover, although the fault has beenrecognized in the carbonates underlying the clay layer. An original strategy was elaborated to define the best-possible parameters of the 3D Common-Reflection-Surface (CRS) stack. The procedure in- cluded refining the velocity search along a velocity guide, using a first CRS stack as the base of a subsequent curvature-parameter search, or a parameter smoothing before stacking. An optimal ap- proach was elaborated on a subset of the data, and furthermore applied to the whole dataset. The resulting image shows improved event continuity in the carbonate cover, which allowed for horizon picking after depth migration, as well as the estimation of post-stack geometrical attributes, such as coherency. The processing indicates a zone of degraded quality of reflection events lying in the N-S direction, above the known fault zone within the underlying formations. Such feature corresponds to an alteration zone at the earth surface. Further investigation at a higher resolution scale is planned to confirm whether this zone could be a spot of possible leakage
https://hal.archives-ouvertes.fr/hal-00857376

hal-00857376
https://hal.archives-ouvertes.fr/hal-00857376

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
A relevant and accurate description of three-dimensional (3D) protein structures can be achieved by characterizing recurrent local structures. In a previous study, we developed a library of 120 3D structural prototypes encompassing all known 11-residues long local protein structures and ensuring a good quality of structural approximation. A local structure prediction method was also proposed. Here, overlapping properties of local protein structures in global ones are taken into account to characterize frequent local networks. At the same time, we propose a new long local structure prediction strategy which involves the use of evolutionary information coupled with Support Vector Machines (SVMs). Our prediction is evaluated by a stringent geometrical assessment. Every local structure prediction with a Calpha RMSD less than 2.5 A from the true local structure is considered as correct. A global prediction rate of 63.1% is then reached, corresponding to an improvement of 7.7 points compared with the previous strategy. In the same way, the prediction of 88.33% of the 120 structural classes is improved with 8.65% mean gain. 85.33% of proteins have better prediction results with a 9.43% average gain. An analysis of prediction rate per local network also supports the global improvement and gives insights into the potential of our method for predicting super local structures. Moreover, a confidence index for the direct estimation of prediction quality is proposed. Finally, our method is proved to be very competitive with cutting-edge strategies encompassing three categories of local structure predictions. Proteins 2009. (c) 2009 Wiley-Liss, Inc.
ISSN: 0887-3585

inserm-00348740
http://www.hal.inserm.fr/inserm-00348740
http://www.hal.inserm.fr/inserm-00348740/document
http://www.hal.inserm.fr/inserm-00348740/file/Bornot_Proteins_2009_preprint_version.pdf
http://www.hal.inserm.fr/inserm-00348740/file/inserm-00348740_edited.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A large sand injectite network is very well exposed in the area of Bevons, Southeast France. The associated sandstone turbiditic channel–fill and the host marls are the Aptian–Albian rocks of the Vocontian Basin. The sand injection network is composed of dykes, sills and sedimentary laccoliths ranging in thickness from mm to pluri–m. The dykes and sills have vertical and horizontal lengths of up to and over 100 m and 1 km, respectively. Outcrop observations show that the architecture and morphology of the sand injectites in the marls is governed by the local stress field during injection, pre–existing faults, the host–rock lithology, compaction, and distance to the potential sand source(s). The main set of dykes is oriented N50–60° perpendicular to the minimum compressive stress σ3 during sand injection. Two other sets of dykes are intruded along pre–existing syn–sedimentary faults oriented N140–150° (set 2) and N90° (set 3) during the Apto–Cenomanian interval. Sills and dykes thin laterally away from their potential sand sources and thin laterally away from them. The vertical thickness variations of the dykes and wings are more complex, as thinning away from the sand sources is often compensated by thickening toward the palaeo–surface. Based on field observations and measurements, we characterized the 3D architecture of the sand injectites and showed that the injectites probably formed due to a forceful injection from an overpressured sand body sealed by low–permeability lithologies.
ISSN: 0191-8141

hal-01243488
https://hal.archives-ouvertes.fr/hal-01243488
DOI : 10.1016/j.jsg.2015.07.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The southernmost part of the Ryukyu subduction, where the Philippine Sea Plate is subducting under the Eurasian Plate, is known to be a very seismically active region of transition from a north-dipping subduction along the Ryukyu subduction to an ~ SE-NW collision along the Taiwanese orogenic wedge. In this paper, we will focus on the Ryukyu forearc area close to Taiwan where the deformation is paroxysmal. In order to decipher the nature of the seismic deformation in this region, a three month passive experiment, combining 22 Ocean Bottom Seismometers and 51 onland stations, has been led. Starting from an a-priori heterogeneous model, we have obtained 801 well-located earthquake hypocenters, a precise P-wave tomography model and 14 focal mechanisms. The seismicity along the Ryukyu forearc is mainly located not only in the vicinity of the Interplate Seismogenic Zone (ISZ) but also within both the subducting PSP and the overriding plate. Seismicity within the upper-plate is essentially localized east of Nanao basin where NW-SE extension occurs, and northwest of the Hoping basin where strike-slip dominates. As revealed by both the P-wave velocity structure and the newly derived seismicity, we argue that a sub-vertical step offsetting the subducting PSP around 10 km may support the presence of a trench-parallel tear. The PSP also undergoes extension in its upper part that is probably caused by buckling and slab pull. The P-wave velocity structure reveals three other major features: (1) a continuity between the Central Range and the Ryukyu Arc with a shallower Moho (~ 30 km depth) between ~ 122.3°N and ~ 122.5°N along the Ryukyu Arc, (2) high P-wave velocities along the eastern side of the Central Range and, (3) two bodies with similar high crustal velocities (6.5-7.0 km/s) at 12-18 km depths, embedded within the Ryukyu arc basement, just north of Hoping Basin and north of the Nanao Basin.
ISSN: 0040-1951

hal-00795521
https://hal.archives-ouvertes.fr/hal-00795521
DOI : 10.1016/j.tecto.2012.04.011

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
We show first results of 3D simulation of sea currents in a realistic context. We use the full Navier-Stokes equations for incompressible viscous fluid. The problem is solved using a second order incremental projection method associated with the finite volume of the staggered (MAC) scheme for the spatial discretization. After validation on classical cases, it is used in a numerical simulation of the Pointe à Pitre harbour area. The use of the fictious domain method permits us to take into account the complexity of bathymetric data and allows us to work with regular meshes and thus preserves the efficiency essential for a 3D code.
ISSN: 1270-900X
Guidel, France

hal-00728894
https://hal.archives-ouvertes.fr/hal-00728894
DOI : 10.1051/proc/201235025

Éditeur(s) : Universite Montpellier II
Résumé : Since 1980, the expansion of a green macro-alga: Valonia aegagropila (C Agardh) is observed in Salses-Leucate lagoon (France). It is currently distributed in the north of the lagoon with important biomasses (40 gDW/m²) eroding the cover of Zostera noltii. The free form of the alga can be transported with the surface or bottom currents depending on seasons. It multiplies mainly by vegetative reproduction. There are few studies on the ecophysiological capacities of V. aegagropila. This work tries to answer why (physiological adaptation) and how (mechanical process of transport) the alga invaded the lagoon, with an approach including observations, experiments in controlled environment and biological and hydrodynamic models. The growth capacities depend on temperature and light intensities, the nutrients absorption rates and internal nitrogen and phosphorus internal quotas were measured and modelled using a Droop model based on internal quota. Vertically transport was studied with laboratory experiments and measurements of biomass transport were made into the lagoon. The biological model (growth, vertical transport, mortality) was coupled to the MARS 3D hydrodynamic model with a meshgrid of 160m. The results show an adaptation of the alga to low availability of phosphorus and an annual growth of biomass controlled by the availability of nutrient during winter. The alga seems to occupy the whole zones where growth is optimal and the risk of invasion of the southern part of the lagoon is limited. This work opens on research prospects on an ecological model (confronting physiological capacities and competition of V. aegagropila, Zostera noltii, green algae and primary production), new physiological experiments, ecological observations and potential valorisation of V. aegagropila.
Depuis 1980, est observée dans l'étang de Salses-Leucate l'expansion d'une macro-algue verte : Valonia aegagropila (C. Agardh). En 2004, elle était présente sur la presque totalité de la moitié nord de la lagune avec des biomasses importantes (jusqu'à 600 gPS/m²). L'algue envahit et érode également la couverture d'herbiers garant de la biodiversité, de la productivité et de la stabilité de l'écosystème. V. aegagropila se reproduit essentiellement de manière végétative (fragmentation des thalles) et possède la particularité de retenir de l'oxygène de la photosynthèse dans sa structure sphérique. Cet oxygène piégé lui donne la possibilité de mouvement sur la verticale et d'être transportée dans le domaine par les courants. Les conditions physico-chimiques de l'étang présentent de fortes variations saisonnières en salinité, en température et en turbidité, ainsi que des apports nutritifs faibles : la production primaire est principalement limitée par le phosphore. Il existe malheureusement peu d'informations sur V. aegagropila ainsi que trop peu de connaissances sur son écophysiologie. Elle semble vivre dans des milieux plutôt oligotrophe dans des régions tropicales à sub-tropicales. Ce travail basé sur une approche d'observations de terrain, d'expérimentations en milieu contrôlé (en laboratoire) et de modélisation des processus, a permis d'une part d'explorer les capacités adaptatives physiologiques de V. aegagropila aux conditions environnementales de l'étang et d'autre part de mettre à jour les modes de fonctionnement de la dynamique spatio-temporelle de la population. Les capacités de croissance ont été mesurées sur un large spectre de température et de lumière. Les capacités d'absorption des sels nutritifs dans l'eau et les facultés de l'algue à stocker l'azote et le phosphore dans ses tissus ont également été étudiées. D'autre part, un modèle de dynamique des populations a été conceptualisé puis développé. Les processus pris en compte dans ce modèle sont la croissance de l'algue (modèle à quota interne), la flottabilité de l'algue et la mortalité par surdensité. Ces processus ont été paramétrés en majeure partie par des expérimentations réalisées en laboratoire. Ce modèle 0D a par la suite était couplé au modèle hydrodynamique MARS3D (modèle Ifremer) mis en place sur la lagune de Salses-Leucate, utilisant deux grilles de calcul (160m ou de 80m de résolution). Les simulations réalisées permettent d'appréhender les capacités spatio-temporelles de la croissance de l'algue dans l'étang, le turnover annuel de la biomasse totale et les attracteurs de biomasse du système sous différents évènements météorologiques. Ces résultats sont comparés avec les répartitions cartographiques de la population observées in situ en 1999 et 2004 et des flux de biomasses mesurés au cours d'observations de terrain entre juin 2003 et septembre 2004. L'ensemble des résultats montre d'une part une adaptation de l'algue à évoluer dans un milieu pauvre en phosphore et d'autre part une croissance annuelle de la biomasse totale qui est principalement contrôlée par les apports hivernaux en sels nutritifs dans la lagune. Les résultats des simulations montrent également que V. aegagropila semble occuper à présent la majeure partie des zones favorables à sa croissance. Il est également montré que si sa capacité de mouvement peut favoriser la dispersion d'individus dans la lagune et accélérer la croissance de la population pour de faibles biomasses initiales, cette même capacité de mouvement joue plutôt un rôle de régulation de la population lorsque la biomasse totale devient importante. On peut penser que le risque de colonisation de l'herbier à zostère de la partie sud de la lagune (bassin de Salses) est limité. Ce travail ouvre enfin des perspectives de recherche sur l'amélioration du modèle de dynamique des populations de l'espèce, sur de nouvelles expérimentations à réaliser ou encore sur la surveillance écologique du milieu. Des propositions sont faites pour concevoir un modèle écologique confrontant les capacités physiologiques des macrophytes (algues vertes, Valonia et zostères) afin d'apréhender les phénomènes de compétitions et les modes de fonctionnement du réseau trophique de la lagune de Salses- Leucate. Des pistes sur la valorisation de la matière algale de V. aegagropila sont enfin proposées.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-2453.pdf
http://archimer.ifremer.fr/doc/00000/2453/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We analyse the fluid flow regime within sediments on the Eastern levee of the modern Mississippi Canyon using 3D seismic data and downhole logging data acquired at Sites U1322 and U1324 during the 2005 Integrated Ocean Drilling Program (IODP) Expedition 308 in the Gulf of Mexico. Sulphate and methane concentrations in pore water show that sulphate-methane transition zone, at 74 and 94 m below seafloor, are amongst the deepest ever found in a sedimentary basin. This is in part due to a basinward fluid flow in a buried turbiditic channel (Blue Unit, 1000 mbsf), which separates sedimentary compartments located below and above this unit, preventing normal upward methane flux to the seafloor. Overpressure in the lower compartment leads to episodic and focused fluid migration through deep conduits that bypass the upper compartment, forming mud volcanoes at the seabed. This may also favour seawater circulation and we interpret the deep sulphate-methane transition zones as a result of high downward sulphate fluxes coming from seawater that are about 5-10 times above those measured in other basins. The results show that geochemical reactions within shallow sediments are dominated by seawater downwelling in the Mars-Ursa basin, compared to other basins in which the upward fluid flux is controlling methane-related reactions. This has implications for the occurrence of gas hydrates in the subsurface and is evidence of the active connection between buried sediments and the water column.
ISSN: 1468-8115

hal-00590501
https://hal.archives-ouvertes.fr/hal-00590501
DOI : 10.1111/j.1468-8123.2010.00304.x

Éditeur(s) : Université d'Angers
Résumé : In oyster farming areas, organic matter fluxes toward sediment is increased. Pacific oysters (Crassostrea gigas) reject organic-rich faeces and pseudofaeces as a result of filtration process. Organic matter can be consumed by benthic fauna, but in excess it can entails the reduction of benthic faunal species richness, abundance and biomass. Organic matter degradation also induces hypoxic (or anoxic) conditions in the sediment, and production of ammonia and sulfides in toxic concentrations. The main objective of this study is to assess the effects of oyster farming on benthic intertidal ecosystems in the Pertuis Charentais. Benthic macrofauna, living (stained) foraminifera, and physicochemical characteristics of the water column and sediment were used as indicators to evaluate these effects. A multidisciplinary approach was conducted across the Pertuis Charentais at 3 different spatial scales: an oyster trestle (micro-scale), an oyster culture area (meso-scale) and various sites across the Pertuis Charentais (macro-scale). The study was also realised at 4 different temporal scales: some months for the spatial micro-scale, every two weeks for 2 years at meso-scale and once per season during one year at macro-scale. In this study, I found that oyster farming enriches sediment in fine particles, organic matter (up to 12 %), particulate organic carbon (15-20 µg mg 1) and leads to high microphytobenthic biomass. Moreover, the association of seasonnal warming (during spring and summer), remineralisation of accumulated organic matter and short-term hypoxic conditions leads to sulfides and ammonium production. Consequently, the benthic biodiversity decreases and the population dynamic is disturbed. The population dynamic disturbance is characterised by fast abundance rises followed by high mortality rates. In these conditions, tolerant benthic macrofaunal (Cirratulidae, Spionidae and Capitellidae) and foraminiferal (Ammonia tepida and Cribroelphidium gunteri) species are promoted. AMBI index confirms "medium" ecological quality of oyster farming areas. On the contrary, across the control sites, sensible species are maintained (Amphipods, Rosalina cf. vilardeboana). Comparison of oyster farming techniques shows that on-bottom culture is less disturbing for benthic ecosystem than off-bottom culture. Axial tomodensitometry, an innovative method, was used to describe in 3D the sedimentary column organisation. I show that oyster farming modifies the sedimentary column functioning. Indeed, the macrofaunal diversity decrease leads to the modification of the functional diversity of assemblages. Thus, the vertical distribution of living foraminifera is limited in oyster farming areas, because their distribution is tightly related to macrofaunal bioturbating modes.
Dans les zones ostréicoles, les flux de matière organique sont importants, l'huître Crasssotrea gigas rejetant sous forme de pseudo-fécès et de fécès de grandes quantités de matière organique. De ce fait, bien que cette matière organique puisse être consommée par la faune benthique, sa surabondance peut provoquer une réduction de la richesse spécifique, de l'abondance et de la biomasse et provoquer sur le plan des processus biogéochimiques des déplétions en oxygène et l'apparition de substances comme l'ammonium et les sulfures dont les concentrations peuvent devenir toxiques. L'objectif principal de cette étude était donc de déterminer l'impact de l'ostréiculture, grâce à plusieurs indicateurs, sur le compartiment benthique d'un écosystème littoral comme les pertuis charentais. Pour évaluer ces effets, la macrofaune benthique et les foraminifères vivants benthiques ont été utilisés en association avec des mesures des paramètres physico-chimiques de la colonne d'eau et du sédiment. Une approche pluridisciplinaire a ainsi été menée dans les pertuis charentais à trois échelles spatiales différentes : à l'échelle d'une table ostréicole (micro-échelle), à l'échelle d'un site ostréicole (méso-échelle) et à l'échelle des pertuis charentais (macro-échelle). Dans les trois cas, un suivi dans le temps a été associé à une étude de distribution spatiale, quelques mois à micro-échelle, tous les quinze jours pendant deux années à méso-échelle et une fois par saison pendant une année à macro-échelle. Ces différentes approches ont permis d'avoir une vision pertinente de la dynamique et de la réponse fonctionnelle de la faune benthique aux changements induits par la présence de l'ostréiculture. La présence des cultures ostréicoles dans les pertuis charentais enrichit les sédiments en particules fines, en matière organique (12 %), en carbone organique particulaire (15-20 µg mg-1) et favorise une production microphytobenthique élevée. Pendant la période chaude de l'année printemps-été, la reminéralisation de la matière organique accumulée associée à des hypoxies temporaires a favorisé la production de sulfures et d'ammonium. Dans les stations soumises à l'ostréiculture, la diversité des assemblages diminue. La dynamique des espèces est caractérisée par des augmentations rapides des abondances suivies d'épisodes de mortalité. Les espèces tolérantes de la macrofaune benthique (Cirratulidae, Spionidae et Capitellidae) et des foraminifères vivants benthiques (Ammonia tepida et Cribroelphidium gunteri) sont favorisées. Le calcul de l'indice AMBI confirme la qualité écologique moyenne de ces sites. Au contraire, dans la station témoin, les espèces sensibles sont favorisées (Amphipodes, Rosalina cf. vilardeboana). La comparaison de la technique de culture sur table et de culture à plat a montré que la culture des huîtres à plat est moins perturbante pour le milieu. L'étude de la bioturbation a montré l'influence qui existe entre le mode de bioturbation des différents groupes de la macrofaune et la répartition verticale des foraminifères vivants dans la colonne sédimentaire. La diminution de la diversité des assemblages de la macrofaune dans les zones soumises à l'ostréiculture modifient la diversité fonctionnelle de ces assemblages et affectent le fonctionnement de la colonne sédimentaire, limitant la répartition verticale des foraminifères dans ces zones.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-2582.pdf
http://archimer.ifremer.fr/doc/00000/2582/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Polygonal faulting is a widespread phenomenon in sedimentary basins worldwide. It changes basin-scale fluid flow patterns and alters the physical properties of the sediments making it important for hydrocarbon exploration and geohazard analysis. It is generally accepted that polygonal fault patterns derive from dewatering and compaction of the host sediments, but there is debate regarding the processes that control polygonal faulting. New multibeam-bathymetry data from the Hatton Basin, NE Atlantic, show up to 10 m deep and 200-600 m wide troughs at the seabed. They connect to each other forming polygons that are several hundred metres across, i.e. of similar size as buried polygonal fault systems observed in 3D seismic data. The troughs are symmetrical and resemble elongated pockmarks. Previously unpublished high-resolution 2D seismic data from the same area show seismic disturbance zones similar to pipes observed under pockmarks elsewhere as well as faults that have all the characteristics of polygonal fault systems. The observation of the wide disturbance zones is enigmatic, as they appear to follow the polygonal seafloor pattern. The observed extent of the polygonal sediment contraction system is substantial covering almost 37,000 km2. We calculate that some 2600 km3 of possibly carbon-bearing fluids have been expelled from this system and we expect that this will affect the benthic ecosystems, although so far there is only limited evidence for chemosynthetic habitats.
ISSN: 0025-3227

hal-00772468
https://hal.archives-ouvertes.fr/hal-00772468
DOI : 10.1016/j.margeo.2012.09.013

Éditeur(s) : HAL CCSD Editions Paralia CFL
Résumé : L'objet de cette communication est la caractérisation hydrodynamique d'un système double de barres festonnées en milieu microtidal. Pour comprendre l'évolution du littoral de Leucate-Plage (Languedoc-Roussillon, France), une campagne de mesures hydrodynamiques in-situ a été réalisée, puis complétée par une étude à l'aide du modèle numérique Quasi-3D SHORECIRC de la houle et des courants dans des conditions plus dynamiques non observées. Les mesures in-situ ont permis de réaliser des cartes de circulation hydrodynamique. Les données modélisées donnent des résultats proches de la réalité en terme d'intensité dans la zone de déferlement, en termes de direction et d'intensité dans la zone deshoaling. This paper deals with the hydrodynamic study of a microtidal double crescentic bars system. To understand the coastal evolution of Leucate-Plage (Languedoc- Roussillon, France), a hydrodynamic survey has been realized, added to numerical studies with Q-3D SHORECIRC model for more dynamic unobserved conditions. Hydrodynamic maps with observed data have been produced. The numeric hydrodynamic maps show good analogies in the shoaling zone but some difference in the surf zone.
ISSN: 1760-8716

hal-00854013
https://hal.archives-ouvertes.fr/hal-00854013
DOI : 10.5150/jngcgc.2008.007-F

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
An exploration 3D seismic data set from the Gjallar Ridge off mid-Norway images a giant fluid seep structure 3 × 5 km wide, which connects to late Palaeocene magmatic sills at depth. Two of the pipes that have developed as hydrothermal vents reach all the way to the modern seafloor implying that they either were active much longer than the original hydrothermal activity or have been reactivated. We combine detailed seismic analysis of the northern pipe and sandbox modeling to constrain pipe initiation and propagation. Although both the seismic data and the sandbox models suggest that fluids at depth are focused through a vertical conduit, sandbox models show that fluids ascend and reach a critical depth migration where focused migration abruptly transforms into distributed fluid flow through unconsolidated sediments. This indicates that at this level the sediments are intensely deformed during pipe propagation, creating a V-shaped structure, i.e. an inverted cone at depth and a positive relief anomaly, 5 to 10 m high, at the seafloor, which is clearly identified on 3D seismic data. Comparison of the geometries observed in sandbox modeling with the seismically observed geometries of the Giant Gjallar Vent suggests that the Giant Gjallar Vent may be a proto-fluid seep at an early stage of its development, preceding the future collapse of the structure forming a seafloor depression. Our results imply that the Gjallar Giant Vent can be used as a window into the geological processes active in the deep parts of the Vøring Basin.
ISSN: 0025-3227

hal-00772465
https://hal.archives-ouvertes.fr/hal-00772465
DOI : 10.1016/j.margeo.2012.08.010

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : Production rates in horizontal shale gas wells display declines that are controlled by the low permeability and the intrinsic heterogeneity of the shale matrix. We present an original multi-continuum approach that yields a physical model able to reproduce the complexity of the decreasing gas rates. The model describes the dynamics of gas rate as function of the physical reservoir parameters and geometry, while the shale matrix heterogeneity is accounted for by a stochastic description of transmissivity field. From the 3D (Dimensional) problem setting, including the heterogeneous shale matrix, the fractures generated by the hydrofracking operations, as well as the production well characteristics, we establish an effective upscaled 1D model for the gas pressures in fracture and matrix as well as the volumetric flux. We analyse the decline curves behaviour, and we identify the time scales that characterize the dynamics of the gas rate decline using explicit analytical Laplace space solutions of the upscaled process model. Asymptotically, the flux curves decrease exponentially, while in an intermediate regime we find a power-law behaviour, in which the flux scales with a power law in time as (t^{-beta }), where (beta ) reflects the medium heterogeneity. We use this solution to fit a set of real data displaying distinctly different decline trends and study the sensitivity of the model to the reservoir parameters in order to identify their respective controls at the different stages of the decline curve dynamics. Results indicate that the initial value of the gas rate is determined by the transmissivity of the fractures and the initial pressure of the gas in the shale matrix. The latter causes mainly a shift in the entire decline curve. The early time of decline curve shape is primarily controlled by the fracture properties (compressibility and transmissivity). During the main part of the economically valuable production times, i.e. before the production rate drops exponentially, the decline curve is strongly controlled by the properties of the shale rocks including their heterogeneity, which is modelled by two parameters describing the non-Fickian pressure diffusion effects in a stochastic framework.
ISSN: 0169-3913

hal-01217247
https://hal.archives-ouvertes.fr/hal-01217247
DOI : 10.1007/s11242-015-0504-y

Éditeur(s) : HAL CCSD Hindawi Publishing Corporation
Résumé : During the 1982-1984 bradyseismic crises in the Campi Flegrei area (Italy), the University of Wisconsin deployed a network of seismological stations to record local earthquakes. In order to analyse the potential of the recorded data in terms of tomographic imaging, a blind test was recently set up and carried out in the framework of a research project. A model representing a hypothetical 3D structure of the area containing the Campi Flegrei caldera was also set up, and a synthetic dataset of time arrivals was in turn computed. The synthetic dataset consists of several thousand P- and S-time arrivals, computed at about fourteen stations. The tomographic inversion was performed by four independent teams using different methods. The teams had no knowledge of either the input velocity model or the earthquake hypocenters used to create the synthetic dataset. The results obtained by the different groups were compared and analysed in light of the true model. This work provides a thorough analysis of the earthquake tomography potential of the dataset recording the seismic activity at Campi Flegrei in the 1982-1984 period. It shows that all the tested earthquake tomography methods provide reliable low-resolution images of the background velocity field of the Campi Flegrei area, but with some differences. However, none of them succeeds in detecting the hypothetical structure details (i.e. with a size smaller than about 1.5-2 km), such as a magmatic chamber 4 km deep and especially the smaller, isolated bodies, which represent possible magmatic chimneys and intrusions.
ISSN: 1687-885X

hal-00795584
https://hal.archives-ouvertes.fr/hal-00795584
DOI : 10.1155/2012/505286