Éditeur(s) : HAL CCSD
Résumé : JEL : C40 ; C60 ; R12 ; L60
This study introduces two new measures of spatial concentration. The proposed M functions constitute an extension to Ripley's functions (Ripley, 1976, 1977). They allow the evaluation of the relative geographic concentration and co-location of industries in a non-homogeneous spatial framework. Some rigorous comparisons with similar recently developed tools prove the relevance of the M functions in the field of spatial economics.
https://halshs.archives-ouvertes.fr/halshs-00372617

halshs-00372617
https://halshs.archives-ouvertes.fr/halshs-00372617
https://halshs.archives-ouvertes.fr/halshs-00372617/document
https://halshs.archives-ouvertes.fr/halshs-00372617/file/HAL_Marcon_Puech_-_MeasuresOfTheGeographicConcentrationOfIndustriesImprovingDistanceBasedMethods.pdf

Éditeur(s) : HAL CCSD European Centre for Disease Prevention and Control
Résumé : International audience
In 2002, the French Food Safety Agency drew attention to the lack of information on the prevalence of human cryptosporidiosis in the country. Two years later, the ANOFEL Cryptosporidium National Network (ACNN) was set up to provide public health authorities with data on the incidence and epidemiology of human cryptosporidiosis in France. Constituted on a voluntary basis, ACNN includes 38 hospital parasitology laboratories (mainly in university hospitals). Each laboratory is engaged to notify new cases of confirmed human cryptosporidiosis, store specimens (e.g. stools, duodenal aspirates or biopsies) and related clinical and epidemiological data, using data sheet forms. From January 2006 to December 2009, 407 cryptosporidiosis cases were notified in France and 364 specimens were collected. Of the notified cases, 74 were children under four years of age, accounting for 18.2%. HIV-infected and immunocompetent patients represented 38.6% (n=157) and 28% (n=114) of cases, respectively. A marked seasonal pattern was observed each year, with increased number of cases in mid to late summer and the beginning of autumn. Genotyping of 345 isolates from 310 patients identified C. parvumin 168 (54.2%) cases, C. hominis in 113 (36.4%) and other species in 29 (9.4%), including C. felis (n=15), C. meleagridis (n=4), C. canis (n=4), Cryptosporidium chipmunk genotype (n=1), Cryptosporidium rabbit genotype (n=1) and new Cryptosporidium genotypes (n=4). These data represent the first multisite report of laboratory-confirmed cases of cryptosporidiosis in France.
ISSN: 1560-7917

hal-00926813
https://hal-unilim.archives-ouvertes.fr/hal-00926813
PUBMED : 20739000

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Multiproxy analyses were performed on core MS27PT recovered in hemipelagic sediments deposited on the Nile margin in order to reconstruct Nile River palaeohydrological fluctuations during the last 100,000 years. The strontium and neodymium isotope composition of the terrigenous fraction and the major element distribution reveal large and abrupt changes in source, oscillating between a dominant aeolian Saharan contribution during arid periods and a dominant Nile River contribution during pluvial periods. Iron content shows a strong correlation with strontium and neodymium isotopes. This allows the use of a high-resolution continuous Fe record as a proxy of Blue Nile sediment input over the last 100,000 years. The detailed Fe record, with approximately 10 years resolution during pluvial periods, is consistent with subtropical African records of well-dated lake level fluctuations and thus constitutes a first continuous high resolution record of the East African monsoon regime intensity over Ethiopia.;The detailed Fe record shows the two main known pluvial periods attributed to strengthening of the African monsoon over Ethiopia, the Nabtian period from 14 to 8 ka cal BP and the Saharan period from 98 to 72 ka BR For the first time, the last glacial period (Marine Isotope Stage (MIS) 2,3 and 4) is documented with a continuous record showing large oscillations between high and low East African palaeo-monsoon regimes.;The end of the Nabtian period occurred at 8 ka in core MS27PT, i.e. much earlier than on the East Equatorial African region where it ended around 5.5 ka. We interpret this as evidence that the southward shift of the rain belt occurred 3000 years earlier over the Eastern Ethiopian Highland and propose that the gradual southward migration of the rain belt was associated with highly variable intensity and longer rainy seasons from 8 to 5 ka. During the last glacial period, two wet periods are present around 60-50 ka BP and 38-30 ka BP. These two humid periods are in phase with the rise of atmospheric CH4 concentrations suggesting that wetland tropical African area was one of the sources of the atmospheric CH4 during the MIS 3. During the Last Glacial Maximum and MIS 4, high Saharan aeolian influxes in phase with records of aeolian dust deposited in East Antarctica are documented. This study highlights the importance of reconstructions of monsoon rainfall fluctuation at high temporal resolution to better understand the link between low- and high-latitude climate variability at millennial timescales.
ISSN: 0277-3791

hal-00496481
https://hal.archives-ouvertes.fr/hal-00496481
DOI : 10.1016/j.quascirev.2010.02.006

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
We provide new constraints on the modes of mantle exhumation and denudation in the pre-orogenic Pyrenees by investigating the poorly known peridotites located east of the Lherz body, in eastern Ariè ge (Vicdessos, Urs, Bestiac, Caussou and Prades main peridotitic bodies). We show that: (1) numerous peridotite bodies, not described so far, are constituted by decametric to sub-metric outcrops scattered between and around the main outcrops identified by Monchoux (1970); (2) most of the peridotites form blocks and lenses of various sizes, from millimetric monocrystalline grains to hectometric olistoliths, embedded in debris flows involving mainly Mesozoic metasediments; these peridotites can therefore be linked to the S-type peridotites of Lagabrielle et al. (2010), and share similarities with the peridotites of Lherz region (Clerc et al., 2012). All originated from tectono-sedimentary processes associated with mantle exhumation in relation with extreme thinning and breakoff of the continental basement; (3) the various petrographic characters of these peridotites and their heterogeneity in serpentinisation degree imply a peculiar mode of exhumation, which merges mantle fragments inherited from different structural levels; (4) the lack of tectonic structures such as faults and shear planes associated with the ultramafic-rich breccia formation and the presence of neoformation of metamorphic minerals within the matrix preclude their origin as cataclasites related to the Latest Cretaceous and Tertiary Pyrenean contractional deformation. The peridotites of eastern Ariè ge are indisputable witnesses of the presence of an inverted hyper-extended Cretaceous passive margin forming the current North Pyrenean zone. The geometry of the extensional system was complex and probably associated with strike-slip faults and transcurrent motion. ß 2016 The Authors. Published by Elsevier Masson SAS on behalf of Acadé mie des sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).
ISSN: 1631-0713

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502/document
https://hal-insu.archives-ouvertes.fr/insu-01280502/file/1-s2.0-S1631071316000043-main.pdf
DOI : 10.1016/j.crte.2015.12.003

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Sur la terre ferme, la sécurité est devenue un thème récurrent de la vie politique, des imaginaires voire de la réalité. Dans le monde de la croisière au contraire, la communication vend un univers idyllique. Or la réalité de la vie à bord du navire n’est pas faite que de bonheur, et les armateurs, les voyagistes, les équipages et les autorités administratives anticipent des situations qui mettent en péril les passagers. La gestion des épidémies ne se limite pas à la grippe H1N1, moment exceptionnel qui cache la réalité fréquente des épidémies de gastro-entérite. Le quotidien sécuritaire est aussi constitué par les risques plus traditionnels : le feu et le naufrage. La croisière également s’accompagne de viols et violences sur des croisiéristes, voire de disparitions de passagers. Ces trois dangers de la croisière font l’objet de mesures de santé publique, de définition de normes de sécurité internationales depuis 1914, et de mesures législatives récentes, puisque le dernier texte a été promulgué par le président Obama en juillet 2010. L’Europe montre un retard important dans l’organisation de cette politique, gage de développement de l’industrie de la croisière.
On land, security has become a recurring theme in the political life of the imagination or reality. In the world of cruising the contrary, communication sells idyllic world. The reality of life on the ship is not made that happiness, and shipowners, operators, crews and administrative authorities anticipate situations that endanger passengers. Outbreak management is not limited to the H1N1 exceptional moment that hides the reality of frequent outbreaks of gastroenteritis. The daily safe is also constituted by the more traditional risks: fire and sinking. The cruise also accompanied by rape and violence on cruise or disappearances of passengers. These three dangers of the cruise are the subject of public health measures, definition of international safety standards since 1914, and recent legislation, since the final text was issued by President Obama in July 2010. Europe shows a significant delay in the organization of the political guarantee for the development of the cruise industry.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5220
http://journals.openedition.org/etudescaribeennes/5220

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background : Trichoderma reesei is the main industrial source of cellulases and hemicellulases required for the hydrolysis of biomass to simple sugars, which can then be used in the production of biofuels and biorefineries. The highly productive strains in use today were generated by classical mutagenesis. As byproducts of this procedure, mutants were generated that turned out to be unable to produce cellulases. In order to identify the mutations responsible for this inability, we sequenced the genome of one of these strains, QM9136, and compared it to that of its progenitor T. reesei QM6a.Results : In QM9136, we detected a surprisingly low number of mutagenic events in the promoter and coding regions of genes, i.e. only eight indels and six single nucleotide variants. One of these indels led to a frame-shift in the Zn2Cys6 transcription factor XYR1, the general regulator of cellulase and xylanase expression, and resulted in its C-terminal truncation by 140 amino acids. Retransformation of strain QM9136 with the wild-type xyr1 allele fully recovered the ability to produce cellulases, and is thus the reason for the cellulase-negative phenotype. Introduction of an engineered xyr1 allele containing the truncating point mutation into the moderate producer T. reesei QM9414 rendered this strain also cellulase-negative. The correspondingly truncated XYR1 protein was still able to enter the nucleus, but failed to be expressed over the basal constitutive level.Conclusion : The missing 140 C-terminal amino acids of XYR1 are therefore responsible for its previously observed auto-regulation which is essential for cellulases to be expressed. Our data present a working example of the use of genome sequencing leading to a functional explanation of the QM9136 cellulase-negative phenotype.
ISSN: 1471-2164

Droits : http://creativecommons.org/licenses/by/
hal-01149671
http://hal.upmc.fr/hal-01149671
http://hal.upmc.fr/hal-01149671/document
http://hal.upmc.fr/hal-01149671/file/Lichius_2015_Genome_sequencing.pdf
DOI : 10.1186/s12864-015-1526-0

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We present new shear-wave splitting measurements performed at 16 stations on the East European Craton, and discuss their implications in terms of upper-mantle anisotropy for this geophysically poorly-known region. Previous investigations of mantle anisotropy in Central Europe have shown fast directions aligning smoothly with the craton's margin and various suggestions have been proposed to explain their origin such as asthenospheric flow or lithospheric frozen-in deformation.;Here, we aim at investigating the continuation of this shear-wave splitting pattern further to the East, into the East European Craton For the craton, the interpretation appears to be less ambiguous than for central Europe since several arguments support lithospheric anisotropy in this region 1) The large-scale coherence within either of the four constituting blocks and the significant variations between the blocks on a small-scale, 2) the weak correlation with absolute plate motion vectors, and 3) the good correlation between anisotropy and crustal features, for which we use magnetic field alignments as a proxy. Rattler good correlation of these magnetic features with seismic fast orientations strongly supports the idea of vertically coherent deformation throughout upper mantle and crust. The observed splitting orientations thus reflect the last tectonic events of each block. frozen-in into the lithosphere for hundreds of millions of years
ISSN: 0040-1951

hal-00475647
https://hal.archives-ouvertes.fr/hal-00475647
https://hal.archives-ouvertes.fr/hal-00475647/document
https://hal.archives-ouvertes.fr/hal-00475647/file/Wuestefeld_EEC_craton_SKS_Tphy2010_hal.pdf
DOI : 10.1016/j.tecto.2009.01.010

Éditeur(s) : HAL CCSD American Society for Investigative Pathology (ASIP)
Résumé : International audience
Semen represents the main vector of HIV dissemination worldwide, yet the origin of HIV in semen remains unclear. Viral populations distinct from those found in blood have been observed in semen, indicating local viral replication within the male genital tract. The seminal vesicles, the secretions of which constitute more than 60% of the seminal fluid, could represent a major source of virus in semen. This study is the first to investigate the susceptibility of human seminal vesicles to HIV infection both in vitro and in vivo. We developed and characterized an organotypic culture of human seminal vesicles to test for target cells and HIV infection, and, in parallel, analyzed the seminal vesicle tissues from HIV-infected donors. In vitro, in contrast to HIV-1 X4, HIV-1 R5 exposure induced productive infection. Infected cells consisted primarily of resident CD163(+) macrophages, often located close to the lumen. In vivo, HIV protein and RNA were also detected primarily in seminal vesicle macrophages in seven of nine HIV-infected donors, some of whom were receiving prolonged suppressive highly active antiretroviral therapy. These results demonstrate that human seminal vesicles support HIV infection in vitro and in vivo and, therefore, have the potential to contribute virus to semen. The presence of infected cells in the seminal vesicles of treated men with undetectable viremia suggests that this organ could constitute a reservoir for HIV.
American Journal of Pathology

inserm-00626549
http://www.hal.inserm.fr/inserm-00626549
DOI : 10.1016/j.ajpath.2011.08.005
PUBMED : 21925468

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Bone Morphogenetic Protein 9 (BMP9) has been recently found to be the physiological ligand for the activin receptor-like kinase 1 (ALK1), and to be a major circulating vascular quiescence factor. Moreover, a soluble chimeric ALK1 protein (ALK1-Fc) has recently been developed and showed powerful anti-tumor growth and anti-angiogenic effects. However, not much is known concerning BMP9. This prompted us to investigate the human endogenous sources of this cytokine and to further characterize its circulating form(s) and its function. Analysis of BMP9 expression reveals that BMP9 is produced by hepatocytes and intrahepatic biliary epithelial cells. Gel filtration analysis combined with ELISA and biological assays demonstrate that BMP9 circulates in plasma (1) as an unprocessed inactive form that can be further activated by furin a serine endoprotease, and (2) as a mature and fully active form (composed of the mature form associated with its prodomain). Analysis of BMP9 circulating levels during mouse development demonstrates that BMP9 peaks during the first 3 weeks after birth and then decreases to 2 ng/mL in adulthood. We also show that circulating BMP9 physiologically induces a constitutive Smad1/5/8 phosphorylation in endothelial cells. Taken together, our results argue for the role of BMP9 as a hepatocyte-derived factor, circulating in inactive (40%) and active (60%) forms, the latter constantly activating endothelial cells to maintain them in a resting state.
ISSN: 1420-682X

hal-00681969
https://hal.archives-ouvertes.fr/hal-00681969
DOI : 10.1007/s00018-011-0751-1
PUBMED : 21710321

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Cette étude originale a vocation à montrer comment un mysticisme authentique s’est formé au fil des siècles en Guadeloupe. Les Antilles sont composées de nombreuses ethnies, aux origines très diversifiées. En Guadeloupe, la société s’est constituée à partir de deux vagues de migrations, qui ont formé une société pluri-ethnique et pluri-culturelle. Ces vagues de migrations se sont inscrites dans un double processus de mondialisation, l’un historique, figé dans le temps, l’autre dynamique, encore effectif de nos jours. La confrontation et la cohabitation de ces ethnies et de ces cultures ont conduit à l’avènement de pratiques mystiques authentiquement guadeloupéennes. Ainsi, le mysticisme est devenu partie prenante de la culture guadeloupéenne, culture encore en construction, qui n’a pas encore soudé en un syncrétisme franc les pratiques des différentes communautés ; chaque individu choisissant, en fonction de ses nécessités, de se référer ou d’appliquer telle ou telle pratique mystique.
This study shows how an authentic mysticism arose in Guadeloupe. The West Indies are made up of many ethnic groups. In Guadeloupe, the society has been constituted by two waves of migrations; so far this society has been pluri-ethnic and pluri-cultural. Those waves reveal a two dimension globalization: the first is historical, likely to be identified in our history, the second is dynamic and is still expanding nowadays. The cohabitation of these ethnic groups and these cultures has led to the creation of an authentic Guadeloupean mysticism. Thus mysticism is important in the Guadeloupean culture. However there has not been syncretism between all the mysticisms of every ethnic group; and every one can choose the mysticism they want, and change whenever they want.
Guadeloupe

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5940
http://journals.openedition.org/etudescaribeennes/5940

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
NWA2268 is a polymict eucrite discovered in the Sahara, at southwest Algeria, close to the region of Tindouf. This meteorite weighs 65 g and presents a thin black fusion crust. The rock is fine- to medium-grained breccia and contains mineral fragments of plagioclases, pyroxenes, spinel, olivine and silica. The rock contains some basaltic fragments with sub-ophitic or cumulative textures, constituted by plagioclases and exsolved pigeonite. Pyroxferroite grains are present and locally destabilised in an association of hedenbergite, fayalite and silica. It also presents unequilibrated eucritic clast with heterogeneous pyroxenes and plagioclases compositions. Pyroxenes in the all of the other clasts have equilibrated composition, with exolved pigeonites with augite lamellaes. This polymict eucrite contains also partially devitrified glass that represents impact melts linked to impact event. None recrystallization of this glass confirms a lack of post-brecciation metamorphism. Diogenitic fragments are less abundant than 10 %. The oxygen isotopic composition of NWA2268 is Δ17O (−0.43). This meteorite is interpreted as belonging to the HED group attributed to the 4-Vesta asteroid.
ISSN: 1866-7411

hal-00903591
https://hal.archives-ouvertes.fr/hal-00903591
DOI : 10.1007/s12517-012-0624-4

Éditeur(s) : HAL CCSD Société des américanistes
Résumé : International audience
A large set of historical documents give us descriptions of Antillean Amerindian boats. These texts constitute a continuous series from the time of first contact to sub-contemporaneous anthropological descriptions. This paper is based on extensive review of the data contained in those early Spanish, Dutch, English, and French sources and also on a review of the few direct archaeological evidences. In this way we tried to analyse not only the nature of the relationship that existed between Antillean Amerindians and the sea but also to obtain an accurate description of their different boat types. Finally we have reconstituted the building process chaîne opératoire of the Kanawa, which were the boat type specifically designed and preferentially used for over-sea navigations.
Nous disposons d'un très grand nombre de descriptions historiques des embarcations amérindiennes antillaises. Ces textes constituent une série continue allant du récit des premiers moments aux études ethnologiques sub-contemporaines. Cet article s'appuie sur une recension d'une ampleur inédite des informations contenues dans ces sources espagnoles, hollandaises, anglaises et françaises précoces ainsi que sur les quelques données archéologiques directes disponibles. Nous avons par ce biais tenté de dégager la nature du rapport entretenu par les populations amérindiennes des Antilles avec l'élément marin, mais aussi d'obtenir la description la plus précise possible des différentes embarcations constituant leur flotte et enfin d'établir la chaîne opératoire de construction des kanawa l'un de ces navires spécifiquement conçu et préférentiellement utilisé pour la navigation en haute mer.
ISSN: 0037-9174

hal-01671136
https://hal.univ-antilles.fr/hal-01671136
https://hal.univ-antilles.fr/hal-01671136/document
https://hal.univ-antilles.fr/hal-01671136/file/JSA102_1_15_art_berard1.pdf
DOI : 10.4000/jsa.14688

Éditeur(s) : HAL CCSD De Gruyter
Résumé : International audience
This article examines the case of Kali'na, a minority Indigenous language of French Guiana, from the point of view of descriptive categories available in the literature (namely dominated language, minoritized language, endangered language). These terms are discussed, favouring more dynamic categories which focus on processes (minoritization/deminoritization). The article uses both micro- and macrosociolinguistic levels of analysis. At the macro level, indicators are proposed to gauge the minorization of Kali'na as it occurs on the scale of Guiana as a whole, by observing attitudes towards Kali'na language and culture, particularly as expressed in the media and in epilinguistic comments made by speakers. At the local level, we explore the effects of the recognition by the State of a Kali'na township and their influence on language minoritization in the village and more generally at the level of the linguistic community. We also attempt to determine to what extent, as far as interactions are concerned, alternations and code switching between Kali'na and French might constitute indicators of the process of minoritization or deminoritization or of language death currently underway.
ISSN: 0165-2516

halshs-00292394
https://halshs.archives-ouvertes.fr/halshs-00292394
https://halshs.archives-ouvertes.fr/halshs-00292394/document
https://halshs.archives-ouvertes.fr/halshs-00292394/file/2006-leglise-alby-minorization.pdf

Éditeur(s) : Amer Soc Biochemistry Molecular Biology Inc
Résumé : Scleractinian corals are the most basal eumetazoan taxon and provide the biological and physical framework for coral reefs, which are among the most diverse of all ecosystems. Over the past three decades and coincident with climate change, these phototrophic symbiotic organisms have been subject to increasingly frequent and severe diseases, which are now geographically widespread and a major threat to these ecosystems. Although coral immunity has been the subject of increasing study, the available information remains fragmentary, especially with respect to coral antimicrobial responses. In this study, we characterized damicornin from Pocillopora damicornis, the first scleractinian antimicrobial peptide (AMP) to be reported. We found that its precursor has a segmented organization comprising a signal peptide, an acidic proregion, and the C-terminal AMP. The 40-residue AMP is cationic, C-terminally amidated, and characterized by the presence of six cysteine molecules joined by three intramolecular disulfide bridges. Its cysteine array is common to another AMP and toxins from cnidarians; this suggests a common ancestor, as has been proposed for AMPs and toxins from arthropods. Damicornin was active in vitro against Gram-positive bacteria and the fungus Fusarium oxysporum. Damicornin expression was studied using a combination of immunohistochemistry, reverse phase HPLC, and quantitative RT-PCR. Our data show that damicornin is constitutively transcribed in ectodermal granular cells, where it is stored, and further released in response to nonpathogenic immune challenge. Damicornin gene expression was repressed by the coral pathogen Vibrio coralliilyticus. This is the first evidence of AMP gene repression in a host-Vibrio interaction.
Journal Of Biological Chemistry (0021-9258) (Amer Soc Biochemistry Molecular Biology Inc), 2011-06 , Vol. 286 , N. 25 , P. 22688-22698

Droits : 2011 by The American Society for Biochemistry and Molecular Biology, Inc.
http://archimer.ifremer.fr/doc/00039/14996/12433.pdf
DOI:10.1074/jbc.M110.216358
http://archimer.ifremer.fr/doc/00039/14996/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Radiofrequency radiations constitute a new form of environmental pollution. Among them, millimeter waves (MMW) will be widely used in the near future for high speed communication systems. This study aimed therefore to evaluate the biocompatibility of MMW at 60 GHz. For this purpose, we used a whole gene expression approach to assess the effect of acute 60 GHz exposure on primary cultures of human keratinocytes. Controls were performed to dissociate the electromagnetic from the thermal effect of MMW. Microarray data were validated by RT-PCR, in order to ensure the reproducibility of the results. MMW exposure at 20 mW/cm2, corresponding to the maximum incident power density authorized for public use (local exposure averaged over 1 cm2), led to an increase of temperature and to a strong modification of keratinocyte gene expression (665 genes differentially expressed). Nevertheless, when temperature is artificially maintained constant, no modification in gene expression was observed after MMW exposure. However, a heat shock control did not mimic exactly the MMW effect, suggesting a slight but specific electromagnetic effect under hyperthermia conditions (34 genes differentially expressed). By RT-PCR, we analyzed the time course of the transcriptomic response and 7 genes have been validated as differentially expressed: ADAMTS6, NOG, IL7R, FADD, JUNB, SNAI2 and HIST1H1A. Our data evidenced a specific electromagnetic effect of MMW, which is associated to the cellular response to hyperthermia. This study raises the question of co-exposures associating radiofrequencies and other environmental sources of cellular stress.
ISSN: 1932-6203

hal-01118066
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118066
PUBMED : 25302706
DOI : 10.1371/journal.pone.0109435
PUBMEDCENTRAL : PMC4193780

Résumé : Les piscicultures marines de plus de 20 t/an de production sont soumises en France à l’obtention de deux autorisations d’exploiter : (i) celle au titre des Cultures Marines (AECM), visant à s’assurer que le site concédé et l’usage du domaine public maritime pour l’exploitation permettent de respecter l’ensemble des contraintes d’intérêt général ; (ii) celle au titre de la réglementation des Installations Classées pour la Protection de l’Environnement (ICPE). Si la première nécessite un dossier de demande d’autorisation relativement simple, la seconde requiert un dossier très complet, qui comprend, outre une notice de renseignementssur l’exploitation, une étude d’impact complète, ainsi qu’une étude des dangers et une notice d’hygiène et de sécurité. Dans ce contexte, les demandeurs en Corse (régularisation ou exploitation nouvelle) sont confrontés aux mêmes difficultés, ce qui a mis en évidence le besoin d’un guide méthodologique adapté aux spécificités régionales, rassemblant en particulier les données de base nécessaires (juridiques, zootechniques, géographiques, climatiques, socio-économiques, écologiques…) ainsi que les méthodes reconnues de l’évaluation des effets potentiels de la ferme sur l’environnement. L’élaboration de ce guide a été soutenue par l’ADEC et suivie par un comité de pilotage composé de représentants des administrations concernées, des pisciculteurs et d’organismes scientifiques. Les aspects importants ont porté sur les effets de la pisciculture sur l’herbier de Posidonie, espèce protégée très présente en Corse et sur la coordination entre les deux procédures AECM et ICPE. Pour chaque partie du dossier ICPE, le guide présente le contexte technique ou scientifique et selon le cas, l’état de l’art, les sources de données disponibles, les méthodes d’acquisition des mesures et d’évaluation des effets potentiels, ainsi que des recommandations pratiques de rédaction. Enfin, le guide est complété par un cahier des charges type destiné à aider les demandeurs à confier à un bureau d’étude spécialisé la réalisation de tout ou partie de la constitution du dossier. Ce guide concerne prioritairement les installations marines de nouvelles exploitations en Corse, envisagées en mer ouverte plutôt que dans des espaces confinés. Néanmoins tout pisciculteur ou futur pisciculteur devant instruire une demande d’autorisation d’exploiter peut y trouver intérêt.

Droits : 2003 Ifremer
http://archimer.ifremer.fr/doc/00223/33469/31873.pdf
http://archimer.ifremer.fr/doc/00223/33469/

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper investigates the narrative challenges and opportunities that contemporary virology offers to popular science and to fiction. The study of viruses reveals extremely complex relations, playing out over different physical and temporal scales. Viruses constitute a heterogeneous population whose interactions with living organisms occur on multiple levels, and whose numbers are vastly superior to human and even bacterial populations on earth. The resulting challenges for narration can be grouped into three main formal questions. The first is the problem of scale, since the numbers and sizes of virus and host populations are vastly different, as are the temporalities over which they transform and survive. The second is the complexity of actants, since viruses are involved in relations where destruction and mutual benefit can overlap, and genetic transformations are played out over many generations. The third is the choice of images through which to convey their behaviours: many existing metaphors in microbiology, such as “chimeras”, “parasites” or “kill-the-winner dynamics”, carry the narrative potential of a mythological and/or theatrical imagination.These questions will first be examined as challenges encountered in the narration of biology for vulgarization purposes, and effects on narrative forms will be outlined: shifts in focalization in order to create multiscalar perspectives; unstable actantial models as expressions of complex relations; and the use or resistance to narrative structures implied by several key metaphors in virological discourse. These formal characteristics will then be presented through two case studies drawn from contemporary fiction. In his “scientific fable” Conflits Intérieurs (2015), microbiologist Eric Bapteste creates a multiscalar narrative by using humans and viruses as both protagonists and narrators in a battle of ideas. In the graphic novel aâma (2011-2014), Frederik Peeters explores the ambiguous potential, both symbiotic and threatening, of a meta-organism uniting humans with microscopic agents. Both these novels play with scale, metaphor and actants so as to question the fundaments of human identity. They posit the act of narration as a defining human attribute, and consequently use the narrative voice as an arena in which we observe the weakening of the notion of the subject by microbiology.
“Narrative, Cognition & Science” Symposium
Erlangen, Germany

hal-01434744
https://hal.archives-ouvertes.fr/hal-01434744

Éditeur(s) : HAL CCSD
Résumé : Karst systems are the most important groundwater reservoirs in Mediterranean area. Beyond saturated zone, unsaturated zone constitute an entity where water storage and transfer play a major role in a global behavior of spring water. This structure and functioning are complex and not well known because of the high heterogeneity created and organized by groundwater flow. In this study, we used gravimetric and hydrogeologic method to directly observe and quantify water storage and transfer processes in unsaturated zone of karst system. Surface to depth gravity measurements on several karst system allow quantifying seasonal water storage changes in unsaturated zone. We show that these variations occur in the first tens meters of unsaturated zone. Furthermore, water storage capacity of unsaturated zone seems to be influenced by lithology (limestone or dolomite). Finally, direct observations of water flow in unsaturated zone are done using caves access. We show that some characteristics of unsaturated water flow such as bipolar slow-fast flow can be widespread for whatever depth of measurement and recharge area. Model of this flow, using a simple modeling scheme, show the complexity of water transfer processes in unsaturated zone of karst system.
Les aquifères karstiques constituent l'essentiel des ressources en eau du pourtour Méditerranéen. Au-delà de la zone saturée de ces systèmes, la zone non saturée constitue une entité importante quant au transfert et au stockage temporaire de l'eau. La structure et le fonctionnement de cette entité du karst sont complexes et mal connus à cause du processus de karstification qui hiérarchise la circulation hydrodynamique en son sein. Dans cette étude nous utilisons des méthodes géodésiques et hydrogéologiques afin d'observer de façon directe et de quantifier les processus de transfert et de stockage de la zone non saturée. Les mesures gravimétriques en surface et profondeur sur différents systèmes karstiques ont permis de quantifier les variations du stockage en eau saisonnier dans la zone non saturée. La gravimétrie différentielle montre que ces variations sont réparties dans les quelques premiers mètres de la zone non saturée. Il semble, de plus, que la capacité de stockage de la zone non saturée soit fonction de la lithologie de l'encaissant (calcaire et dolomie). Enfin, des observations directes du flux d'eau en zone non saturée ont été effectuées par le biais de mesures dans différentes cavités. Nous montrons que certaines caractéristiques du flux d'eau en zone non saturée, comme la présence d'un flux bipolaire lent-rapide, peuvent être généralisées quelque soit la profondeur de mesure et la surface d'impluvium. La modélisation de ce flux, à partir d'un schéma simple, a montré la complexité des processus de transfert engendrés au sein de la zone non saturée.
https://tel.archives-ouvertes.fr/tel-00829346

tel-00829346
https://tel.archives-ouvertes.fr/tel-00829346
https://tel.archives-ouvertes.fr/tel-00829346/document
https://tel.archives-ouvertes.fr/tel-00829346/file/manuscrit_deville_finish.pdf

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We propose in this paper an original method for quantifying the material losses at subduction zones mainly based on vertical movements of the active margins. We first test the method, using isostatic and elastic models, applying it to 15 different well-constrained convergent margins. The main conclusion is that most of them are presently close to the isostatic equilibrium. Consequently, we consider as a first hypothesis that such was also the case in the past and that erosion or accretion are natural mechanisms restoring the equilibrium in response to a perturbation. Then, we apply this model to compute the geometry of the palcoslab knowing the palcotopography of the margin. The comparison between present and past ocean margin lithospheric wedge geometries provides estimates of the removed material that constituted the initial wedge. Two cases were studied for palcoreconstructions: Japan and Peru. The results show that a considerable amount of material was removed during the Neogene along both margins. A detailed interpretation of the Neogene history of the Japan margin is proposed on the basis of our results.
ISSN: 0148-0227

hal-01261647
https://hal.archives-ouvertes.fr/hal-01261647
https://hal.archives-ouvertes.fr/hal-01261647/document
https://hal.archives-ouvertes.fr/hal-01261647/file/lallemanJGR1992.pdf
DOI : 10.1029/91JB02342

Éditeur(s) : HAL CCSD
Résumé : International audience
In two swordtail species of the genus Xiphophorus, the onset of puberty has been shown to be modulated at the P locus by sequence polymorphism and gene copy-number variation affecting the type 4 melanocortin hormone receptor Mc4r. The system works through the interaction of two allelic types, one encoding wild type and the other dominant-negative receptors. We have analyzed the structure and evolution of the P locus in the platyfish Xiphophorus maculatus, where as many as nine alleles of P determining the onset of sexual maturity in males and females, fecundity in females, and adult size in males are located on both the X and Y chromosomes in a region linked to the master sex-determining locus. In this species, mc4r has been amplified to up to 10 copies on both the X and Y chromosomes through recent large serial duplications. Subsequently, mc4r paralogues have diverged considerably into many different subtypes. Certain copies have acquired new untranslated regions through genomic rearrangements, and transposable element insertions and other mutations have accumulated in promoter regions, possibly explaining observed deviations from the classical mc4r transcriptional pattern. In the mc4r-coding sequence, in-frame insertions and deletions as well as nonsense and missense mutations have generated a high diversity of Mc4r-predicted proteins. Most of these variants are expressed in embryos, adults, and/or tumors. Functional receptor characterization demonstrated major divergence in pharmacological behavior for Mc4r receptors encoded by different copies of platyfish mc4r, with differences in constitutive activity as well as binding and stimulation by hormones. The high degree of allelic and copy-number variation observed between individuals can explain the high level of polymorphism for sexual maturation, fecundity, and body size in the platyfish: multiple combinations of Mc4r variants with different biochemical properties might interact to modulate the melanocortin signaling that regulates the hypothalamus-pituitary-gonadal axis.
GENETICS

hal-01544912
https://hal.archives-ouvertes.fr/hal-01544912
DOI : 10.1534/genetics.113.155952