Résumé : Planta de 6 a 10 m, estolonífera. Hojas pecioladas, de hasta 2 m, arregladas en espiral, simples, enteras, ampliamente elípticas, penninervadas. Inflorescencias espiciformes que crecen desde el cormo a través del pseudo tallo, recurvo-colgantes; flores blanco-amarillentas, en cimas a lo largo del eje principal, cubiertas por brácteas grandes. Fruto cilíndrico de hasta 30 cm, amarillo o verdoso al madurar.
Plante de 6 à 10 m, stolonifère. Feuilles pétiolées, pouvant atteindre 2 m, disposées en spirale, simples, entières, largement elliptiques, penniformes. Inflorescences spiciformes sortant du pseudo-tronc, recourbées et pendantes; fleurs blanc-jaunâtres, disposées en cymes le long de l’axe principal, couvertes de grandes bractées, les supérieures femelles. Fruit cylindrique pouvant avoir 30 cm de long, jaune ou verdâtre au cours de la période de maturation.
Large perennial herb 2-9 m high with basal corm. Pseudostem composed of leaf sheaths forming the ‘trunk’ of the plant. Leaves blades oblong, entire 1.5-4 m x 0.7-1 m, petiole 30-90 cm long, rounded beneath, channeled above; inflorescences terminal, growing from the pseudostem, erect or drooping; flowers in flat clusters in the axils of spirally arranged broad, dark purple-coloured bracts, functionally unisexual, the lower female the upper male; mature fruit fleshy, cylindrical, 6-35 cm x 2.5-5 cm with greenish, yellow or reddish skin.
Nativa de los trópicos del Viejo Mundo, cultivada en las regiones tropicales de todo el mundo.
Originaire des tropiques de l’;Ancien Monde, cultivée dans les régions tropicales du monde entier.
Native to the tropics of the Old World, cultivated

http://www.tramil.net/fototeca/plant238

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Are bisphenol A (BPA) and BPA analogs (BPA-A) safe for male human reproductive function? The endocrine function of human testes explants [assessed by measuring testosterone and insulin-like factor 3 (INSL3)] was impacted by exposure of the human adult testis explants to BPA/BPA-A. The few epidemiologic studies performed suggest that bisphenols have potential endocrine disruptive properties, but they did not identify clear and direct patterns of endocrine disruption. Adult human testis explants in culture were exposed to BPA and the analogs bisphenol F (BPF), bisphenol S (BPS), bisphenol E (BPE), bisphenol B (BPB) and bisphenol A diglycidyl ether (BADGE) at 10(-9)-10(-5) M for 24 or 48 h. Human adult testes were obtained from prostate cancer patients who had no hormone therapy, or from multiorgan donors. After ex vivo exposure to the investigated bisphenols, the measured outcomes were related to histopathology (gross morphology and germ cell viability determined by anti-caspase three immunohistochemistry), and the levels of testosterone, INSL3 and inhibin B were measured using immunoassays. The levels of mRNA encoding key enzymes of bisphenol biotransformation were investigated by quantitative PCR: UGT2B15 UDP (glucuronosyltransferase two family, polypeptide B15), GUSB (glucuronidase beta), SULT1A1 and 3 (sulfotransferase family 1 A member 1 and 3) and STS (steroid sulfatase). A significant dose-dependent inhibition was found between testosterone levels measured in the culture medium and concentrations of BPA (P = 0.00778 at 24 h and P = 0.0291 at 48 h), BPE (P = 0.039) and BPF (P = 0.00663). The observed BPA and BPA-A-induced inhibition of testosterone production varied according to duration of exposure and BPA/BPA-A concentrations. BPA (10(-9) M; P < 0.05), BPB (10(-9) M; P < 0.05), BPS (10(-9) and 10(-8) M; P < 0.05) and BADGE (10(-5) M; P < 0.05) increased Leydig cell INSL3 production. By contrast, BPE dose dependently inhibited INSL3 (P = 0.0372). Conversely, Sertoli cell function (inhibin B) and germ cell viability were not significantly affected by either bisphenols. N/A. Environmental compounds cannot be deliberately administered to men, justifying the use of an ex vivo approach. A relatively low number of testes samples were available for analysis (n = 3, except for testosterone secretion with n = 5). The active concentrations of BPA and BPA-A used in the study were higher than those found in human biological fluids. Under our experimental conditions, direct exposure to BPA or BPA-A can result in endocrine disturbance in the adult human testis.
ISSN: 0268-1161

hal-01578582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582/file/Parallel%20assessment%20of%20the%20effects%20of%20bisphenol%20A_accepted.pdf
DOI : 10.1093/humrep/dex093

Éditeur(s) : HAL CCSD Society for Range Management
Résumé : Grasslands and agroecosystems occupy one-third of the terrestrial area, but their contribution to the global carbon cycle remains uncertain. We used a set of 316 site-years of CO(2) exchange measurements to quantify gross primary productivity, respiration, and light-response parameters of grasslands, shrublands/savanna, wetlands, and cropland ecosystems worldwide. We analyzed data from 72 global flux-tower sites partitioned into gross photosynthesis and ecosystem respiration with the use of the light-response method (Gilmanov, T. G., D. A. Johnson, and N. Z. Saliendra. 2003. Growing season CO(2) fluxes in a sagebrushsteppe ecosystem in Idaho: Bowen ratio/energy balance measurements and modeling. Basic and Applied Ecology 4:167-183) from the RANGEFLUX and WORLDGRASSAGRIFLUX data sets supplemented by 46 sites from the FLUXNET La Thuile data set partitioned with the use of the temperature-response method (Reichstein, M., E. Falge, D. Baldocchi, D. Papale, R. Valentini, M. Aubinet, P. Berbigier, C. Bernhofer, N. Buchmann, M. Falk, T. Gilmanov, A. Granier, T. Grunwald, K. Havrankova, D. Janous, A. Knohl, T. Laurela, A. Lohila, D. Loustau, G. Matteucci, T. Meyers, F. Miglietta, J.M. Ourcival, D. Perrin, J. Pumpanen, S. Rambal, E. Rotenberg, M. Sanz, J. Tenhunen, G. Seufert, F. Vaccari, T. Vesala, and D. Yakir. 2005. On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm. Global Change Biology 11: 1.424-1439). Maximum values of the quantum yield (alpha = 75 mmol.mol(-1)), photosynthetic capacity (A(max) = 3.4 mg CO(2) . m(-2).s-1), gross photosynthesis (P(g,max) = 1.16 g CO(2) . m(-2).d(-1)), and ecological light-use efficiency (epsilon(ecol) = 59 mmol . mol(-1)) of managed grasslands and high-production croplands exceeded those of most forest ecosystems, indicating the potential of nonforest ecosystems for uptake of atmospheric CO(2). Maximum values of gross primary production (8 600 g CO(2) . m(-2).yr(-1)), total ecosystem respiration (7 900 g CO(2) . m(-2).yr(-1)), and net CO(2) exchange (2 400 g CO(2) . m(-2).yr(-1)) were observed for intensively managed grasslands and high-yield crops, and are comparable to or higher than those for forest ecosystems, excluding some tropical forests. On average, 80% of the nonforest sites were apparent sinks for atmospheric CO(2), with mean net uptake of 700 g CO(2) . m(-2).yr(-1) for intensive grasslands and 933 g CO(2) . m(-2).d(-1) for croplands. However, part of these apparent sinks is accumulated in crops and forage, which are carbon pools that are harvested, transported, and decomposed off site. Therefore, although agricultural fields may be predominantly sinks for atmospheric CO(2), this does not imply that they are necessarily increasing their carbon stock.
ISSN: 1550-7424

hal-01190754
https://hal.archives-ouvertes.fr/hal-01190754
DOI : 10.2111/rem-d-09-00072.1
PRODINRA : 214043

Éditeur(s) : Elsevier
Résumé : A coupled three-dimensional physical-biogeochemical model was developed in order to simulate the ecological functioning of the Rio de la Plata estuary and plume. The biogeochemical model reproduces the nitrogen cycle between five compartments: dissolved inorganic nitrogen, phytoplankton, zooplankton, detritus and dissolved organic nitrogen. The coupling is tested in seasonal climatological configurations and for the particular year 1999. The circulation is forced with Parana and Uruguay rivers discharges, NCEP wind and tide. The biogeochemical model includes loads of inorganic and organic nitrogen from both rivers. The model reproduces the correct tidal amplitudes in the estuary, as well as the most outstanding features of the observed horizontal and vertical structures of the salinity plume. Simulated surface chlorophyll a concentrations exhibit maximum values all year long seaward of the turbidity front, between the 0.5 and 15 isohalines, in agreement with SeaWiFS images of the area. The model simulates well the low primary production in the light-limited highly turbid tidal river (20 gC/m(2)/yr), the high production area in the frontal zone where it can reach 500 gC/m(2)/yr, and the nutrient-limited production in the outer estuary and inner shelf (300 gC/m(2)/yr), with realistic values in each case. According to the 1999 model simulation, the tidal river is the location of organic nitrogen remineralization with a consequent increase of the inorganic pool. At the entrance of the frontal zone, inorganic nitrogen represents about 75% of the whole nitrogen pool, it is reduced to 50% at its sea end-member. The outer estuary has the same sink role for inorganic nitrogen, suggesting that organic nitrogen is the major form exported to the shelf.
Continental Shelf Research (0278-4343) (Elsevier), 2005-03 , Vol. 25 , N. 5-6 , P. 629-653

Droits : 2004 Elsevier Ltd.
http://archimer.ifremer.fr/doc/2005/publication-334.pdf
DOI:10.1016/j.csr.2004.10.003
http://archimer.ifremer.fr/doc/00000/334/

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND: The effects of pressure-controlled (PC) ventilation on the ventilatory and haemodynamic parameters during laparoscopy procedures had not been carefully assessed. This prospective cross-over study was undertaken to compare how volume-controlled (VC) and PC modes could affect pulmonary mechanics, gas exchange, and cardiac function in patients undergoing laparoscopy. METHODS: Twenty-one patients undergoing laparoscopic urological procedures had their lungs ventilated at the beginning with VC ventilation. PC ventilation was instituted at the end of the VC sequence. Ventilator settings were adjusted to keep tidal volume, respiratory rate, and Fi(o(2)) constant in every mode. A complete set of ventilatory, haemodynamic, and gas exchange parameters was obtained under VC after 40 min of pneumoperitoneum and 20 min after switching for PC. Transoesophageal echocardiography was performed in order to evaluate systolic and diastolic function of the heart. RESULTS: When VC was switched to PC, peak airway pressure decreased [mean (sd) 32 (6) vs 27 (6) cm H(2)O; P < 0.0001], peak inspiratory flow increased [17 (3) vs 48 (8) litre min(-1); P < 0.0001), and dynamic compliance improved [+15 (8)%]. No difference was noted for static airway pressure, static compliance, and arterial oxygenation. No significant change could be demonstrated in the systolic [left ventricular end-systolic wall stress 66 (16) vs 63 (14) x 10(3) dyn cm(-2) m(-2)] or diastolic function [early diastolic velocity 10.3 (2.5) vs 10.5 (2.7) cm s(-1)]. CONCLUSIONS: In this study, no short-term beneficial effect of PC ventilation could be demonstrated over conventional VC ventilation in patients with pneumoperitoneum.
BJA

hal-00689758
https://hal.archives-ouvertes.fr/hal-00689758
DOI : 10.1093/bja/aem166
PUBMED : 17626027

Éditeur(s) : HAL CCSD
Résumé : Submitted to the Journal of Mathematical Analysis and Applications
International audience
We present new types of regularity for nonlinear generalized functions, based on the notion of regular growth with respect to the regularizing parameter of Colombeau's simplified model. This generalizes the notion of G^{ infty }-regularity introduced by M. Oberguggenberger. A key point is that these regularities can be characterized, for compactly supported generalized functions, by a property of their Fourier transform. This opens the door to microanalysis of singularities of generalized functions, with respect to these regularities. We present a complete study of this topic, including properties of the Fourier transform (exchange and regularity theorems) and relationship with classical theory, via suitable results of embeddings.
J. Math. Anal. Appl.

Droits : info:eu-repo/semantics/OpenAccess
hal-00020280
https://hal.archives-ouvertes.fr/hal-00020280
https://hal.archives-ouvertes.fr/hal-00020280/document
https://hal.archives-ouvertes.fr/hal-00020280/file/ADelcroixGRegularJan27.pdf
ARXIV : math/0603183

Éditeur(s) : Elsevier Science Bv
Résumé : Mechanisms controlling the transfer and retention of silicon (Si) along continental margins are poorly understood, but play a major role in the functioning of coastal ecosystems and the oceanic biological pump of carbon. Deep-sea fans are well recognized as carbon sink spots, but we lack knowledge about the importance of the fans in the global Si cycle. Here, we provide a first estimate of the role played by the Congo deep-sea fan, one of the biggest in the world, in the Si cycle. Sediment cores sampled in the deep-sea fan were analyzed to build a Si mass balance. An exceptionally high accumulation rate of amorphous silica aSiO(2) (2.29 +/- 0.58 mol Si m(-2) y(-1)) was found, due to a high sedimentation rate and the presence of aluminum in the sediments. Although favored by bioirrigation, recycling fluxes remained low (0.3 mol Si m(-2) y(-1)) and reconstructed input fluxes could only be explained by lateral inputs coming from the canyon. Preliminary calculations show that the rapid transport of aSiO(2) through the canyon and the excellent preservation efficiency in the sediments imply that 50% of aSiO(2) river inputs from the Congo River accumulate annually in the deep-sea fan. Si:C ratios in deep-sea fan sediments were very low (0.2) and only three times as high as those measured in the river itself, which suggests that material from the river and the continental shelf was delivered directly through the canyon, with very little time for Si and C cycle decoupling to take place.
Journal Of Marine Systems (0924-7963) (Elsevier Science Bv), 2015-01 , Vol. 141 , P. 71-79

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00251/36242/35797.pdf
DOI:10.1016/j.jmarsys.2014.07.010
http://archimer.ifremer.fr/doc/00251/36242/

Éditeur(s) : HAL CCSD
Résumé : For a decade, distance-based methods have been widely employed and constantly improved in the field of spatial economics. These methods are a very useful tool for accurately evaluating the spatial distribution of plants or retail stores, for example (Duranton and Overman, 2008). In this paper, we introduce a new distance-based statistical measure for evaluating the spatial concentration of economic activities. To our knowledge, the m function is the first relative density function to be proposed in the economics literature. This tool supplements the typology of distance-based methods recently drawn up by Marcon and Puech (2012). By considering several theoretical and empirical examples, we show the advantages and the limits of the m function for detecting spatial structures in economics.
https://hal.archives-ouvertes.fr/hal-01082178

hal-01082178
https://hal.archives-ouvertes.fr/hal-01082178
https://hal.archives-ouvertes.fr/hal-01082178v3/document
https://hal.archives-ouvertes.fr/hal-01082178/file/LANG-%20MARCON-PUECH%20-%20m%20-%20HAL%2001082178v3.pdf

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : Ants have evolved venoms rich in peptides and proteins used for predation, defense, and communication. However, they remain extremely understudied due to the minimal amount of venom secreted by each ant. The present study investigated the differences in the proteome and peptidome of the venom from the bullet ant, Paraponera clavata. Venom samples were collected from a single colony either by manual venom gland dissection or by electrical stimulation and were compared using proteomic methods. Venom proteins were separated by 2D-PAGE and identified by nanoLC-ESI-QTOF MS/MS. Venom peptides were initially separated using C18 reversed-phase high-performance liquid chromatography, then analyzed by MALDI-TOF MS. The proteomic analysis revealed numerous proteins that could be assigned a biological function (total 94), mainly as toxins, or roles in cell regulation and transport. This investigation found that ca. 73% of the proteins were common to venoms collected by the two methods. The peptidomic analysis revealed a large number of peptides (total 309) but with <20% shared by the two collection methods. There was also a marked difference between venoms obtained by venom gland dissection from different ant colonies. These findings demonstrate the rich composition and variability of P. clavata venom.
ISSN: 1535-3893

hal-01603415
https://hal.archives-ouvertes.fr/hal-01603415
DOI : 10.1021/acs.jproteome.6b00948
PRODINRA : 406775
PUBMED : 28118015

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study presents microstructural evidence for deformation-controlled melt organization and for changes in olivine deformation associated with the presence of melt in an 80 m vertical section of the crust-mantle transition zone in the Oman ophiolite. This zone represents an 'end member' case for analyzing feedbacks between deformation and melt distribution in the upper mantle, since it experienced strong shear strains in presence of large melt fractions. It is characterized by a subhorizontal compositional layering at the mm to meter scale, from weakly impregnated dunites to olivine-rich gabbros, which parallels a pervasive foliation containing a strong stretching lineation. The parallelism between the compositional layering and the foliation, the diffuse limits of the layers, the alignment of elongated plagioclase-rich aggregates devoid of internal deformation structures with the elongation of olivine crystals in the dunitic layers, and the sharp compositional changes across some, but not all layer limits suggest deformation plays an essential role on the development of the layering. The variation on a mm-scale of the olivine crystal preferred orientation (CPO) symmetry as a function of the modal content: from axial-[100] symmetry in layers with <70% modal olivine to axial-[010] in more gabbroic levels (<40% olivine), which is repeated over the entire section, implies deformation in presence of variable melt fractions. Axial-[100] olivine CPO in olivine-rich layers is consistent with deformation by dislocation creep under high temperature, low pressure, dry conditions. Axial-[010] olivine CPO patterns imply additional sliding along preferentially wetted (010) grain boundaries, increase in the activity of [001] glide, or transpression localized in the melt-rich layers. Since the change in CPO symmetry is not accompanied by dispersion, instantaneous melt fractions must have remained <30-40% in all layers. The continuous variation in olivine CPO symmetry with decreasing olivine content implies therefore that the former depends on the cumulated strain in presence of melt rather than on the instantaneous melt fraction.
ISSN: 0012-821X

hal-00795508
https://hal.archives-ouvertes.fr/hal-00795508
DOI : 10.1016/j.epsl.2012.10.003

Éditeur(s) : Wiley / Blackwell
Résumé : P>The distribution of the archaeal communities in deep subseafloor sediments [0-36 m below the seafloor (mbsf)] from the New Caledonia and Fairway Basins was investigated using DNA- and RNA-derived 16S rRNA clone libraries, functional genes and denaturing gradient gel electrophoresis (DGGE). A new method, Co-Migration DGGE (CM-DGGE), was developed to access selectively the active archaeal diversity. Prokaryotic cell abundances at the open-ocean sites were on average similar to 3.5 times lower than at a site under terrestrial influence. The sediment surface archaeal community (0-1.5 mbsf) was characterized by active Marine Group 1 (MG-1) Archaea that co-occurred with ammonia monooxygenase gene (amoA) sequences affiliated to a group of uncultured sedimentary Crenarchaeota. However, the anoxic subsurface methane-poor sediments (below 1.5 mbsf) were dominated by less active archaeal communities, such as the Thermoplasmatales, Marine Benthic Group D and other lineages probably involved in the methane cycle (Methanosarcinales, ANME-2 and DSAG/MBG-B). Moreover, the archaeal diversity of some sediment layers was restricted to only one lineage (Uncultured Euryarchaeota, DHVE6, MBG-B, MG-1 and SAGMEG). Sequences forming two clusters within the Thermococcales order were also present in these cold subseafloor sediments, suggesting that these uncultured putative thermophilic archaeal communities might have originated from a different environment. This study shows a transition between surface and subsurface sediment archaeal communities.
Environmental Microbiology (1462-2912) (Wiley / Blackwell), 2009-09 , Vol. 11 , N. 9 , P. 2446-2462

Droits : 2009 Society for Applied Microbiology and Wiley - Blackwell Publishing Ltd.
http://archimer.ifremer.fr/doc/2009/publication-6801.pdf
DOI:10.1111/j.1462-2920.2009.01976.x
http://archimer.ifremer.fr/doc/00000/6801/

Éditeur(s) : North-Holland Publishing Company
Résumé : The Rift Valley between 36° 42'N and 36° 55'N in the Atlantic Ocean is 31 km wide, with half-widths of 12 and 19 km for the western and eastern sides respectively. Both outer edges of the Rift Valley stand about 1500 m above an Inner Floor where very fresh pillow lavas occur. The Inner Floor probably includes the locus of new crust ; and its bordering slopes, which are particularly well-defined on the western side, limit to less than about 2.5 km the width of the zone over which new crust may have evolved with little or no vertical displacement. The width of the locus of new crust may be less than 0.5 km between 36° 45'N and 36° 47'N, where the deepest slopes of the Rift Valley walls nearly merge. Near 36° 50'N, the Inner Floor accommodates an approximately 1 km wide, 4 km long Central High, with a height of up to 250 m. In this area, the locus of new crust may also occupy a very narrow zone ; it may lie either along the Central High or along a trough flanking the Central High. The magnetic anomaly pattern indicates that, since the beginning of the Brunhes epoch (6.9 X 10(5) yr B.P.), the eastern limb has grown approximately twice as fast as the western limb. Using extrapolated spreading rates, the ages of the outer edges of the Rift Valley are 1.3 and 1.7 m.y. for the eastern and western sides respectively. Comparison with data for the Rift Valley in other parts of the ocean further suggests that the residence time of new crust in the Rift Valley is about 1.5 m.y. Uplift of crust from the Inner Floor, which may be dominated by lithospheric thickening, may thus be primarily a function of age. [NOT CONTROLLED OCR]
Earth and Planetary Science Letters (North-Holland Publishing Company), 1974 , Vol. 22 , P. 29-43

Droits : North-Holland Publishing Company, Amsterdam
http://archimer.ifremer.fr/doc/1974/publication-5159.pdf
http://archimer.ifremer.fr/doc/00000/5159/

Éditeur(s) : HAL CCSD Federation of American Society of Experimental Biology
Résumé : International audience
Testes of most male mammals present the particularity of being externalized from the body and are consequently slightly cooler than core body temperature (4-8 degrees C below). Although, hypothermia of the testis is known to increase germ cells apoptosis, little is known about the underlying molecular mechanisms, including cold sensors, transduction pathways, and apoptosis triggers. In this study, using a functional knockout mouse model of the cold and menthol receptors, dubbed transient receptor potential melastatine 8 (TRPM8) channels, we found that TRPM8 initiated the cold-shock response by differentially modulating cold- and heat-shock proteins. Besides, apoptosis of germ cells increased in proportion to the cooling level in control mice but was independent of temperature in knockout mice. We also observed that the rate of germ cell death correlated positively with the reactive oxygen species level and negatively with the expression of the detoxifying enzymes. This result suggests that the TRPM8 sensor is a key determinant of germ cell fate under hypothermic stimulation.Borowiec, A.-S., Sion, B., Chalmel, F., Rolland, A. D., Lemonnier, L., De Clerck, T., Bokhobza, A., Derouiche, S., Dewailly, E., Slomianny, C., Mauduit, C., Benahmed, M., Roudbaraki, M., Jegou, B., Prevarskaya, N., Bidaux, G. Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation.
ISSN: 0892-6638

hal-01390973
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01390973
DOI : 10.1096/fj.201600257R
PUBMED : 27317670

Éditeur(s) : HAL CCSD Hindawi Publishing Corporation
Résumé : International audience
We generalize Ripley's K function to get a new function, M, to characterize the spatial structure of a point pattern relatively to another one. We show that this new approach is pertinent in ecology when space is not homogenous and the size of objects matters. We present how to use the function and test the data against the null hypothesis of independence between points. In a tropical tree data set we detect intraspecific aggregation and interspecific competition.
ISSN: 1687-9708

hal-01502623
https://hal-agroparistech.archives-ouvertes.fr/hal-01502623
DOI : 10.1155/2012/619281

Éditeur(s) : HAL CCSD
Résumé : International audience
ABSTRACT :A satellite retrieval of surface solar irradiance (SSI) based on GOES satellite data is presented and validated for the French Guiana with three years of in situ measurements from six ground stations. We propose a particle filter approach combining GOES satellite observations and in situ data. We propose an original observation function based on a joint probability distribution and taking advantages of the characteristics of both the involved type of data. The statistical results are compared with those of existing estimation methods and they are found to be in accordance with them. The daily bias ranges from -12 W/m² (-6% of the mean of measurements) to 12 W/m² (6%), depending on the stations. The daily root mean square difference ranges between 23 W/m² (10%) and 27 W/m² (15%). The correlation coefficient is close to 0.92. There is no seasonal climatic effect on the method, the bias and RMSD remain similar for both the rainy and the dry season, but better correlation is observed in the rainy season than in the dry season. Uncertainties are mainly due to the presence of specific tropical atmospheric conditions during the dry season. The method has been tested through various tests: cross-validation scheme has highlighted the potential generalization of the model in a temporal dimension; the ability of the method to effectively duplicate anomalies in surface solar irradiance time series has also been tested. The robustness of the results shows the interest of the method compared to other existing estimation methods. Because of its simplicity of implementation this method opens new prospects in estimating surface solar irradiance. It is concluded that using a particle filter and original observation function method allow a high-quality surface solar irradiance estimation in French Guiana.RESUMEUne méthode d'estimation de l'irradiance solaire de surface (SSI) à partir de données satellites GOES est présentée et validée par comparaison avec trois années de mesures in situ provenant de six stations météorologiques de Guyane Française. Dans cet article, nous proposons une approche par filtre particulaire combinant observations du satellite GOES et données in situ. Nous proposons une fonction d'observation originale basée sur une distribution de probabilité conjointe des deux types de données. Les résultats statistiques sont conformes à ceux des méthodes existantes. Le biais journalier varie de -16 W / m² (-7% de la moyenne des mesures) à 12 W / m² (6%). L'erreur quadratique moyenne (RMSD) est comprise entre 23 W / m² (10%) et 27 W / m² (15%). Le coefficient de corrélation est de 0,92. La méthode est peu sensible aux variations climatiques saisonnières, le biais et RMSD restent similaires en saison des pluies comme en saison sèche, mais une meilleure corrélation est observée pendant la saison des pluies. Les incertitudes sont principalement dues à la présence de conditions atmosphériques tropicales spécifiques en saison sèche. La méthode a été soumise à différents tests : un processus de validation croisée a mis en évidence la possible généralisation du modèle dans une dimension temporelle, la capacité du modèle à reproduire efficacement des anomalies dans les séries temporelles d'irradiance solaire de surface a aussi été testée. La robustesse des résultats obtenus montrent l'intérêt du modèle par rapport aux autres méthodes d'estimation existantes. A cause de sa simplicité de mise en oeuvre cette méthode ouvre de nouvelles perspectives en matière d'estimation de l'irradiance solaire au sol. Nous concluons que l'utilisation d'un filtre particulaire combinée à une fonction d'observation originale permet une estimation de haute qualité de l'irradiance solaire au sol en Guyane Française.
Canadian Journal of Remote Sensing

meteo-01304574
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304574
DOI : 10.1080/07038992.2015.1040150

Éditeur(s) : HAL CCSD
Résumé : JEL : C40 ; C60 ; R12 ; L60
This study introduces two new measures of spatial concentration. The proposed M functions constitute an extension to Ripley's functions (Ripley, 1976, 1977). They allow the evaluation of the relative geographic concentration and co-location of industries in a non-homogeneous spatial framework. Some rigorous comparisons with similar recently developed tools prove the relevance of the M functions in the field of spatial economics.
https://halshs.archives-ouvertes.fr/halshs-00372617

halshs-00372617
https://halshs.archives-ouvertes.fr/halshs-00372617
https://halshs.archives-ouvertes.fr/halshs-00372617/document
https://halshs.archives-ouvertes.fr/halshs-00372617/file/HAL_Marcon_Puech_-_MeasuresOfTheGeographicConcentrationOfIndustriesImprovingDistanceBasedMethods.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
We explored the relationship between soil processes, estimated through soil respiration (Rsoil), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in Rsoil in a tropical forest. The influence of tree size was examined using an index (Ic) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between Ic and litterfall,root mass and Rsoil, respectively. Strong significant relationships were found between Ic and both litterfall and root mass. Rsoil showed a large range of variations over the 1-ha experimental plot, from 1.5 to 12.6 gC m−2 d−1. The best relationship between Ic and Rsoil only explained 17% of the spatial variation in Rsoil. These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution-which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1.30 m above ground level or at 0.5 m above the buttresses)-in explaining spatial variations in Rsoil.
ISSN: 0032-079X

hal-00797064
https://hal.archives-ouvertes.fr/hal-00797064

Éditeur(s) : HAL CCSD
Résumé : Prelimary version - 13 pages.
International audience
A new approach to the algebra G_{τ} of temperate nonlinear generalized functions is proposed, in which G_{τ} is based on the space O_{M} endowed with is natural topology in contrary to previous constructions. Thus, this construction fits perfectly in the general scheme of construction of Colombeau type algebras and reveals better properties of G_{τ}. This is illustrated by the natural introduction of a regularity theory in G_{τ}, of the Fourier transform, with the definition of G_{O_{C}′}, the space of rapidly generalized distributions which is the Fourier image of G_{τ}.
Publ. Inst.Math. (Beograd) (N.S.)

hal-00201458
https://hal.archives-ouvertes.fr/hal-00201458
https://hal.archives-ouvertes.fr/hal-00201458/document
https://hal.archives-ouvertes.fr/hal-00201458/file/NewGOMdec29WithAdditions.pdf
ARXIV : 0801.0074

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy F
Résumé : International audience
We discuss a property of distance-based measures that has not been addressed with regard to evaluating the geographic concentration of economic activities. The article focuses on the choice between a probability density function of point-pair distances or a cumulative function. We begin by introducing a new cumulative function, M, for evaluating the relative geographic concentration and the co-location of industries in a non-homogeneous spatial framework. Secondly, some rigorous comparisons are made with the leading probability density function of Duranton and Overman (2005), Kd. The merits of the simultaneous use of Kd and M is proved, underlining the complementary nature of the results they provide.
Journal of Economic Geography

hal-01094082
https://hal-agroparistech.archives-ouvertes.fr/hal-01094082
DOI : 10.1093/jeg/lbp056

Éditeur(s) : HAL CCSD
Résumé : International audience
Symbiosis is a widespread phenomenon in the biosphere. In marine benthic environments breakdown of symbiosis is responsible for coral bleaching and dramatically affects coral reef ecosystems functioning [1]. In the water column, planktonic organisms are key component of pelagic ecosystems and a number of species form mutualistic association with microalgae forming a photosymbiosis [2]. Here we intended to investigate the genetic basis of photosymbiosis, through a transcriptomic approach on marine plankton organisms. We focused more specifically on associations occurring between radiolarian host (protist, zooplankton) and dinoflagellates symbiont (protist, phytoplankton) living inside the host cell. It has recently been highlighted that these holobionts are widespread in oligotrophic open oceans and there are also evidences of their fundamental implication in biogeochemical carbon, silica and strontium cycles [3, 4, 5, 6]. RNA-seq technologies allow obtaining an unprecedented amount of data for unicellular organisms isolated from the environment [7]. The study of such non-model holobionts datasets requires de novo assembly, which implies considerable computational resources and the potential production of chimeric sequences [8, 9].We therefore developed an original strategy aiming at accelerating and improving de novo assembly for holobiont datasets. We chose SIMKA [10] a fast kmer-based method initially developed to estimate the similarity between numerous metagenomic datasets, and which has been recently adapted to extract their common sequences. As our symbionts are identified, we used SIMKA to compare our holobionts transcriptomes to publicly available dinoflagellates transcriptomes [11] generating two datasets, one composed of reads from the symbionts and another with reads from the host (for which no reference data are currently available). Independent assemblies were then performed in parallel, accelerating the study process, and minimizing the proportion of resulting chimeric sequences. Our strategy produced a unique and comprehensive genomic dataset for Radiolaria [12, 13], and offers a pragmatic, large scale, comparison strategy to assemble and study holobionts [9]. Our new sequences obtained from holobionts study will be used for phylogenomics investigation, as reference for environmental metagenomic studies and ultimately to understand and characterize the molecular basis of symbiotic relationships in the plankton.Bibliografic references :[1] Simon K. Davy, Denis Allemand, and Virginia M. Weis. “Cell Biology of Cnidarian-Dinoflagellate Symbiosis”. In: Microbiology and Molecular Biology Reviews 76.2 (June 1, 2012), pp. 229–261. issn: 1092-2172, 1098- 5557. doi: 10.1128/MMBR.05014-11.[2] Janouškovec, J. et al. “Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics”. in: PNAS 201614842 (2016). doi:10.1073/pnas.1614842114[3] Tristan Biard et al. “In situ imaging reveals the biomass of giant protists in the global ocean”. In: Nature advance online publication (Apr. 20, 2016). issn: 0028-0836. doi: 10.1038/nature17652.[4] Lionel Guidi et al. “Plankton networks driving carbon export in the olig- otrophic ocean”. In: Nature 532.7600 (Apr. 28, 2016), pp. 465–470. issn: 0028-0836. doi: 10.1038/nature16942.[5] Diane K. Stoecker et al. “Acquired phototrophy in aquatic protists”. In: Aquatic Microbial Ecology 57.3 (Nov. 24, 2009), pp. 279–310. doi: 10.3354/ame01340.[6] Johan Decelle et al. “An original mode of symbiosis in open ocean plankton”. In: Proceedings of the National Academy of Sciences 109.44 (Oct. 30, 2012), pp. 18000–18005. issn: 0027-8424, 1091-6490. doi: 10. 1073/pnas.1212303109.[7] Sergio Balzano et al. “Transcriptome analyses to investigate symbiotic relationships between marine protists”. In: Frontiers in Microbiology 6 (Mar. 17, 2015). issn: 1664-302X. doi: 10.3389/fmicb.2015.00098.[8] Li, B. et al. “Evaluation of de novo transcriptome assemblies from RNA-Seq data”. In: Genome Biology 15, 553 (2014).[9] Sangwan, N., Xia, F. & Gilbert, J. A. “Recovering complete and draft population genomes from metagenome datasets”. In: Microbiome 4, 8 (2016).[10] Gaëtan Benoit et al. “Multiple comparative metagenomics using mul- tiset k -mer counting”. In: PeerJ Computer Science 2 (Nov. 14, 2016). doi: 10.7717/peerj-cs.94.[11] Patrick J. Keeling et al. “The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing”. In: PLOS Biol 12.6 (June 2014), e1001889. issn: 1545-7885. doi: 10.1371/journal.pbio.1001889.[12] Burki, F. et al. “Evolution of Rhizaria: new insights from phylogenomic analysis of uncultured protists”. In BMC Evolutionary Biology 10, 377 (2010).
International Conference on Holobionts
Paris, France

hal-01575069
https://hal.inria.fr/hal-01575069