Résumé : La tuberculose (TB), maladie infectieuse contagieuse, est causée par une mycobactérie appartenant au complexe Mycobacterium tuberculosis (MTBC). Malgré de nombreuses campagnes de vaccination par le BCG (Bacilles de Calmette et Guérin) et les traitements antituberculeux, on observe une réémergence de la maladie depuis les années 80. Ce bouleversement s’explique par la coïnfection avec le virus du VIH/SIDA, la désorganisation des systèmes de santé et par l’apparition des bactéries résistantes aux principaux antibiotiques antituberculeux. Dans ce contexte une meilleure connaissance des mouvements et de l’évolution des clones circulants du bacille tuberculeux permettrait de détecter plus rapidement et de façon plus pertinente l’émergence d’épidémies. Le contrôle et la surveillance de la maladie représentent des moyens essentiels pour lutter contre l’expansion mondiale de la tuberculose. C’est ainsi que l’unité de la Tuberculose et des Mycobactéries de l’Institut Pasteur de la Guadeloupe (IPG) a mis en place une base de données de profils génotypiques pour l’étude de l’épidémiologie globale de la tuberculose. Dans le cadre de cette thèse, nous décrirons les méthodes de bioinformatique qui ont été utilisées pour la gestion et l’exploitation de la 6ème version (SITVIT2) de cette base de données des génotypes pour mieux comprendre l’évolution et la dissémination mondiale du bacille tuberculeux. Cette base intègre aussi plusieurs marqueurs moléculaires tels que les MIRU-VNTRs (« mycobacterial interspersed repetitive units-variable number of tandem repeats ») et le Spoligotype43 servant à mieux décrire et identifier les familles de profils génotypiques du MTBC. La banque de données SITVIT2 ne cesse d’évoluer, et elle contient actuellement des informations épidémiologiques sur 111 635 isolats cliniques. Cette base de données est consultable en ligne à l’adresse suivante : http://www.pasteur-guadeloupe.fr:8081/SITVIT2/. Nous avons également réalisé une base de données nommée SITVITBovis qui est dédiée à la tuberculose bovine. Cette base de données sera accessible à l’adresse : http://www.pasteur-guadeloupe.fr:8081/SITVIT_Bovis/. Parallèlement au développement et à la gestion des bases de données, ce travail de thèse s’est appuyé sur plusieurs études épidémiologiques et phylogéographiques mettant en corrélation les données disponibles sur la résistance aux médicaments ou les caractéristiques démographiques (dont le sexe, l’âge, le statut VIH, et l’origine du patient). Notre initiative de recherche permet ainsi d’améliorer la caractérisation phylogénétique détaillée des lignées du MTBC, ainsi que l’épidémiologie des clones en circulation, afin d’élaborer une cartographie géographique des isolats cliniques prédominants pour les bacilles tuberculeux principalement impliqués dans la maladie, à l’échelle nationale, régionale et mondiale. La superposition ultérieure de ces cartes avec des données sociopolitiques, économiques et démographiques obtenues auprès de Systèmes d’information géographique (SIG) ont permis de dresser un portrait précis des disparités actuelles par pays ou sous-région. Cette thèse représente une importante collaboration avec plusieurs équipes de chercheurs travaillant également dans le domaine de l’épidémiologie moléculaire de la tuberculose. L’objectif à long terme de ce travail, est d’optimiser la structure de la base, et de pérenniser l’enrichissement de celle-ci (notamment par l’automatisation et la facilité de la saisie de données). Une représentation optimale et une meilleure accessibilité des données de la base conforteraient les efforts faits pour le contrôle et la surveillance de la TB dans monde.
Tuberculosis (TB) is a contagious infectious disease caused by mycobacteria belonging to the Mycobacterium tuberculosis complex (MTBC). Despite numerous campaigns of vaccination by the BCG (Bacillus Calmette-Guérin) vaccine, and TB treatments, there was a resurgence of the disease since the 80s. This disruption is due to coinfection with HIV/AIDS, disorganization of health systems and the emergence of bacteria resistant to anti-TB drugs. In this context, a better understanding of the movements and changes of circulating clones of tubercle bacilli would detect faster and more relevant emerging epidemics. The control and monitoring of the disease are essential means to fight against the worldwide spread of tuberculosis. Thus the TB and Mycobacteria unit of the Pasteur Institute of Guadeloupe (IPG) has developed a database of genotypic profiles for the study of global epidemiology of tuberculosis.In this thesis, we discuss the Bioinformatical methods that have been used for the management and development of the 6th version (SITVIT2) of this database of genotypes to better understand the evolution and global dissemination of the tubercle bacillus. The database also includes several molecular markers such as MIRU-VNTRs (mycobacterial interspersed repetitive units- variable number of tandem repeats) and Spoligotype43 allowing a better description and identification of the families of genotypic profiles of Mycobacterium tuberculosis complex. SITVIT2 database is constantly evolving, and it currently contains epidemiological information on 111,635 clinical isolates. This database is available online at the following address: http://www.pasteur-guadeloupe.fr:8081/SITVIT2/. We also developed a database named "SITVITBovis", which is dedicated to bovine tuberculosis. This database will be accessible at: http://www.pasteur-guadeloupe.fr:8081/SITVIT_Bovis/.Alongside the development and management of databases, this work was based on several epidemiological and phylogeographic studies correlating data on drug resistance or demographic characteristics (including sex, age, HIV status, and the origin of the patient). Our research initiative is thus focused to further improve in depth phylogenetic characterization of MTBC lineages, as well as the epidemiological analysis of circulating clones to generate evidence-based geographical mapping of predominant clinical isolates of tubercle bacilli causing the bulk of the disease both at country and regional level. Further superposition of these maps with socio-political, economical and demographical available through Geographic Information Systems (GIS) allows to have a precise view of prevailing disparities at the level of country or sub-region. This thesis represents an important collaboration with several researchers teams also working in the field of molecular epidemiology of tuberculosis.The long-term goal of this work is to further optimize the database structure, and sustain enriching it (including automation and ease of data entry). Optimum performance and accessibility of data in the database would reinforce efforts to control and surveillance of TB in the world.

http://www.theses.fr/2014AGUY0791/document

Éditeur(s) : Oxford university press
Résumé : Fish-aggregating devices (FADs) are increasingly used worldwide to enhance tuna catches. Meanwhile, ecosystem-based management of this fishery is constrained by a paucity of information regarding the interaction of FAD-associated tuna aggregations with their local environment. This paper reports the results of a nine-month study around a FAD moored near Martinique Island, aimed at assessing the effects of the local environment on the variability of monthly estimates of proximate tuna biomass. Dual-frequency, active acoustics provided highresolution quantitative data on the pelagic community around the FAD, from fish to micronekton forage. Geostatistics were used to compute biomass estimates of the tuna aggregation comprising most of the FADassociated fish biomass, with a sampling error of 27%. Environmental variability was summarized by a small set of principal components (PCs) derived from profiles of temperature, salinity and dissolved oxygen vs. depth; and maps of chlorophyll a derived from remotely sensed, sea-surface colour. A generalized linear model was used to relate tuna biomass to environmental PCs and revealed a positive correlation between tuna abundance and: i) a micronekton layer sensed at 38 kHz and potentially consisting of preferred prey at about 180 m depth; and ii) low subsurface salinity (60–80 m). These favourable environmental conditions may be related to thepresence of North Brazilian Current eddies that migrating tuna follow when not temporally associated with the FADs.
ICES Journal of Marine Science (1054-3139) (Oxford university press), 2009-07 , Vol. 66 , N. 6 , P. 1410-1416

Droits : 2009 Oxford university press
http://archimer.ifremer.fr/doc/2008/publication-6162.pdf
DOI:10.1093/icesjms/fsp039
http://archimer.ifremer.fr/doc/00000/6162/

Éditeur(s) : HAL CCSD Elsevier
Résumé : The current interpretation of the Messinian Salinity Crisis (MSC) involves the deposition of the so-called “peripheral or marginal” evaporites in onshore basins, as well as the erosion of the margins and the formation of thick evaporites in the deep parts of the basins. The present study focuses on intermediate depth basins, i.e. located between the onshore outcrops and the deep basins. Indeed, the Balearic Promontory shows small stepped basins filled with MSC deposits between its western extremity on the Alicante shelf and its eastern end around the Menorca block. New and already available seismic reflection profiles and onshore data allow us to investigate the nature and geometrical relationships of these deposits in the area between the islands of Ibiza and Mallorca.Our observations suggest the existence of three MSC-related units in this area. The lowermost transparent seismic unit can be interpreted as a 100 to 200-m-thick salt layer deposited in the deepest part of the Central Mallorca Depression. These evaporites pass laterally and upward into a thin-bedded seismic unit, which could be lithologically equivalent to the Upper Evaporites of the deep basins. All around the borders of the Central Mallorca Depression, this bedded seismic unit onlaps a Slope Unit which shows bedded to chaotic and rafted facies. The Messinian continental shelf is eroded and incised by a valley extending from the Palma onshore area to the Mallorca downslope domain.Our results suggest the presence offshore of at least two generations of diachronous MSC deposits. The observation of salt on a continental high and the widespread MSC deposits on the margins of the Central Mallorca Depression call into question the location of halite preferentially in the deep abyssal basins and the significance of the deep basin MSC units that onlap onto the Margin Erosional Surface (MES), as observed all around the passive margins of the Northwest-Mediterranean Basin. The dual terminology used for peripheral/deep MSC evaporites cannot be applied to any of the MSC units found in the study area.
ISSN: 0025-3227

hal-01115656
https://hal.archives-ouvertes.fr/hal-01115656
DOI : 10.1016/j.margeo.2014.10.001

Éditeur(s) : HAL CCSD
Résumé : International audience
Obesity is currently an increasing public health problem. The intra-uterine environment plays a critical role in foetal development. The objective of this study is to investigate the association of obesity with modifications in the metabolic profiles of pregnant women, and their new-borns. Based on the PELAGIE cohort (Brittany, France), a sample of 321 pregnant women was divided into three groups according to their body mass index (BMI) (normal, over-weight and obese). Nuclear magnetic resonance-based metabolomics analyses were performed on maternal urine and cord-blood samples. Partial least squares regression-discriminant analysis (PLS-DA), polytomous and logistic regressions were used to differentiate the metabolic profiles of the three BMI groups after adjusting for potential confounders. Specific profiles were observed for the overweight and obese women (BMI > 25) compared to the normal-weight women: they had a decrease in urinary hippurate excretion associated with a decrease in phenylalanine and an increase in creatinine. We also showed an increase in the urinary excretion of lactate, citrate, acetate, creatine, and lysine only in obese women (BMI > 30) compared to the normal-weight women. The PLS-DA modelling did not reveal any significant difference between the cord-blood metabolic profiles of newborns according to maternal BMI—although infants born of obese women had a higher birth weight and a lower Apgar score. Our results confirmed the potential link between obesity and gut microbiota disruption (changes in urinary acids), as well as energy and amino-acid metabolism but did not reveal any disruption among newborns.
Metabolomics

Droits : info:eu-repo/semantics/OpenAccess
hal-01195742
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01195742
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01195742/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01195742/file/Impact%20of%20maternal%20obesity_accepted.pdf
DOI : 10.1007/s11306-015-0836-1

Éditeur(s) : Elsevier Sci Ltd
Résumé : A detailed morphological analysis of the outer shelf and continental slope of the Western Gulf of Lion is presented, based on swath bathymetry data together with sub-bottom profiles and high resolution seismic reflection profiles. These data reveal two main erosive features, of very different dimensions: the axial incision and the canyon's major valley. The height of axial incisions' flanks with respect to the canyon deepest point (the thalweg) ranges from 40 to 150 m. It creates a small axial erosive path within the canyon's major valley, which is typically bounded by flanks of more than 700 m in height. We interpret the axial incision observed in the sea floor as the imprint of turbidity currents that eroded the floor of canyons during phases of connection to rivers (hyperpycnal turbidity current). Such currents are most likely to have formed during the Last Glacial Maximum (LGM) as both proximity of the shoreline (due to the lowstand of sea level) and high detrital sediment supply (due to glacial abrasion upstream) increased the flow of sediments delivered to the canyon heads. Fossil axial incisions, observed in seismic lines, are related to equivalent conditions. The axial incision, however, has a key influence on canyon evolution as it triggers mass wasting of different sizes that affect the canyon's major valley (head and flanks). We interpret the geometry of the canyon's major valley as the result of recurrent activity of axial incisions. These periods of activity occurred during low sea levels at glacial maxima and show a cyclicity of 100,000 years for the last 400,000 years.
Marine And Petroleum Geology (0264-8172) (Elsevier Sci Ltd), 2005-06 , Vol. 22 , N. 6-7 , P. 805-826

Droits : 2005 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2005/publication-353.pdf
DOI:10.1016/j.marpetgeo.2005.03.011
http://archimer.ifremer.fr/doc/00000/353/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The investigation of deformation rates on a mountain piedmont can provide key information for improving our understanding of the overall dynamics of a mountain range. Here, we estimate the shortening rate absorbed by a Quaternary emergent detachment fold on the southeastern piedmont of the Tianshan (China). Our work is primarily based on new 10Be cosmogenic exposure dating of deformed alluvial surfaces. The method we have developed combines depth profiling with sampling of surface cobbles, thereby allowing exposure time, erosion rate and inheritance to be simultaneously constrained. The exposure ages of the uppermost uplifted alluvial surfaces are around 140±17 ka140±17 ka, 130±9 ka130±9 ka and 47±9 ka47±9 ka, from west to east. A terrace lying below the 140 ka surface is dated at 65±5 ka65±5 ka. The ages of the uplifted and folded alluvial surfaces were then combined with estimates of shortening obtained using two distinct methods: (1) the excess area method, where sedimentation rates, extracted from magnetostratigraphic studies, are used to determine the amount of sedimentation after the abandonment of the river; and (2) a folding model derived from sandbox experiments. The late Pleistocene shortening rates are shown to be between 0.4±0.1 mm/yr0.4±0.1 mm/yr and 0.8±0.5 mm/yr0.8±0.5 mm/yr on the western part of the fold and 2.1±0.4 mm/yr2.1±0.4 mm/yr along its central part. The central part of the frontal Yakeng anticline therefore accommodates up to 25% of the total shortening currently absorbed across the whole Eastern Tianshan range (8 mm/yr). However, this situation seems to have prevailed for only the last 150 ka, as the shortening rate absorbed by this nascent fold was previously ten times slower. While the initiation of folding of the Yakeng anticline can be traced back to 5.5 Ma ago, the basinward migration of the active deformation front onto the Yakeng fold is a relatively recent phenomenon and appears to be diachronous from west to east, probably in relation to the tectonic activity of the folds in the hinterland.
ISSN: 0012-821X

hal-01306997
https://hal.archives-ouvertes.fr/hal-01306997
DOI : 10.1016/j.epsl.2015.11.041

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The western margin of the Gulf of Mexico (Veracruz State, Mexico) displays an extensive Neogene gravitational system, whereby the Neogene siliciclastic sediments are detached from underlying Mesozoic carbonates along decollement surface in Oligocene underpressured clays. Rapidly subsiding half-grabens develop above the footwall associated with major listric faults, whereas mini-basins develop in the deepest parts of the slope, in conjunction with the growth of west-verging compressional features. Between the high-angle normal faults in the west and the thrust anticlines in the east, a wide roll-over structure has grown progressively, resulting in a major topographic break in the morphology of the slope profile. Coupled forward kinematic modelling (Thrustpack) and stratigraphic modelling (Dionisos), calibrated against seismic profiles and two key nearshore wells, have been applied to representative regional transects across the margin, in order to quantify the vertical (subsidence) and horizontal (gravitational) deformations, and to discuss the impact of various key parameters on the distribution of debris flow depositions. These simulations are compared with data from distant ODP wells and discussed in the scope of current exploration strategies in both the US and Mexican portions of the Gulf of Mexico basin.
ISSN: 0040-1951

hal-00424595
https://hal.archives-ouvertes.fr/hal-00424595
DOI : 10.1016/j.tecto.2008.06.017

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Maguelone shore extends along the northern coast of the Gulf of Lions, west of the Rhone Delta and east of high-gradient coastal streams that have provided most of the clastic sediments to the Gulf of Lions margin since the early Miocene. This 10 km-wide area is constituted by a small coastal watershed (15 km long) in low-lying carbonate hills, a kilometre-wide marsh, a sandy beach barrier and a shoreface experiencing local low sedimentation rates. This onshore-offshore transition zone is a key area to understand the relationships between erosion, by-pass, deposition and preservation processes. Unlike the neighbouring Rhone deposits that display numerous thick deltaic sequences related to a continuous sediment flux, the Maguelone shore exhibits peculiar sedimentary bodies. The analysis of about 250 km of new VHR seismic profiles acquired over the study area, 9 short cores and outcrops data allowed us to determine the three-dimensional high-resolution geometry of the coastal system tracts from Quaternary to present-day. This revealed dominant denudation processes in the Upstream catchments associated with the formation of incised valleys during Quaternary lowstands. In addition, this study investigates the erosion and deposition mechanisms controlled by littoral hydrodynamics that have been taken place on this shore since the last transgression. In particular, metre-high and hundreds of metre-long sandy bodies constructed by alongshore hydrodynamics were identified and their effect on the morphodynamics of the whole littoral system is discussed. The Maguelone shore can be used as an experimental study for onshore/offshore dynamics under the influence of microtidal wave/current hydrodynamics and very low river-derived sediment flux during a eustatic cycle. Geometry of system tracts across flood plain to shoreface is usually considered to be controlled by relative sea-level changes, and is successfully analysed with 2D sequence stratigraphy cross-shore models. It is observed that in areas like the Maguelone shore, traditional sequence stratigraphy methods might not be fully relevant and need to integrate alongshore hydrodynamical processes.
ISSN: 0025-3227

hal-00421060
https://hal.archives-ouvertes.fr/hal-00421060
DOI : 10.1016/j.margeo.2009.06.008

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The contourite depositional system (CDS) along the southwestern Iberian Margin (SIM), within the Gulf of Cadiz and offshore areas of western Portugal bear the unmistakable signal of Mediterranean Outflow Water (MOW) exiting the Strait of Gibraltar. This locality records key information concerning the effects of tectonic activity on margin sedimentation, the effects of MOW dynamics on Atlantic circulation, and how these factors may have influenced global climate. Over the last four decades, numerous studies have been conducted on the late Miocene, Pliocene and Quaternary sedimentary stacking pattern of Neogene basins along the SIM for both academic and resources exploration purposes. However, understanding of the region rests primarily on basic seismic stratigraphy calibrated with limited data from only a few exploration wells. The Integrated Ocean Drilling Program (IODP) Expedition 339 recently drilled five sites in the Gulf of Cadiz and two sites on the western Iberian margin. The integration of core and borehole data with other geophysical databases leads us to propose a new stratigraphic framework. Interpretation of IODP Exp. 339 data along with that from industry sources and onshore outcrop analysis helps refine our understanding of the SIM's sedimentary evolution.We identify significant changes in sedimentation style and dominant sedimentary processes, coupled with widespread depositional hiatuses along the SIM within the Cadiz, Sanlucar, Doñana, Algarve and Alentejo basins. Following the 4.5 Ma cessation of a previous phase of tectonic activity related to the Miocene–Pliocene boundary, tectonics continued to influence margin development, downslope sediment transport and CDS evolution. Sedimentary features indicate tectonic pulses of about 0.8–0.9 Ma duration with a pronounced overprint of ~ 2–2.5 Ma cycles. These more protracted cycles relate to the westward rollback of subducted lithosphere at the convergent Africa-Eurasia plate boundary as its previous NW–SE compressional regime shifted to a WNW–ESE direction. Two major compressional events affecting to the Neogene basins at 3.2–3 Ma and 2–2.3 Ma help constrain the three main stages of CDS evolution. The stages include: 1) the initial-drift stage (5.33–3.2 Ma) with a weak MOW, 2) a transitional-drift stage (3.2–2 Ma) and 3) a growth-drift stage (2 Ma-present time) with enhanced MOW circulation into the Atlantic and associated contourite development due to greater bottom-current velocity. Two minor Pleistocene discontinuities at 0.7–0.9 Ma and 0.3–0.6 Ma record the effects of renewed tectonic activity on basin evolution, appearing most prominently in the Doñana basin. Several discontinuities bounding major and minor units appear on seismic profiles. Quaternary records offer the clearest example of this, with major units of about 0.8–0.9 Ma and sub-units of 0.4–0.5 Ma. Sedimentation is controlled by a combination of tectonics, sediment supply, sea-level and climate. This research identifies time scales of tectonic controls on deep-marine sedimentation, specifically over periods of 2.5–> 0.4 Ma. Shorter-term climatic (orbital) mechanisms control sedimentation at time scales of ≤ 0.4 Ma. The role of bottom water circulation and associated processes in shaping the seafloor and controlling the sedimentary stacking pattern on continental margins has to be seriously reconsidered in future multidisciplinary studies. This is not only because of the common occurrence of sandy contourite deposits in deep water setting and their economic interest for hydrocarbon exploration, but principally because they archive the heartbeat of the interior Earth and therefore have important sedimentary and paleoceanographic implications.
ISSN: 0025-3227

hal-01356166
https://hal.archives-ouvertes.fr/hal-01356166
DOI : 10.1016/j.margeo.2015.09.013

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : We report the northernmost and deepest known occurrence of deep-water pycnodontine oysters based on two surveys along the French Atlantic continental margin to the La Chapelle continental slope (2006) and the Guilvinec Canyon (2008) The combined use of multibeam bathymetry seismic profiling CTD casts and a remotely operated vehicle (ROV) made it possible to describe the physical habitat and to assess the oceanographic control for the recently described species Neopycnodonte zibrowii These oysters have been observed in vivo in depths from 540 to 846 m colonizing overhanging banks or escarpments protruding from steep canyon flanks Especially in the Bay of Biscay such physical habitats may only be observed within canyons where they are created by both long-term turbiditic and contouritic processes Frequent observations of sand ripples on the seabed indicate the presence of a steady but enhanced bottom current of about 40 cm/s The occurrence of oysters also coincides with the Interface between the Eastern North Atlantic Water and the Mediterranean Outflow Water A combination of this water mass mixing internal tide generation and a strong primary surface productivity may generate an enhanced nutrient flux which is funnelled through the canyon When the ideal environmental conditions are met up to 100 individuals per m(2) may be observed These deep-water oysters require a vertical habitat which is often incompatible with the requirements of other sessile organisms and are only sparsely distributed along the continental margins The discovery of these giant oyster banks illustrates the rich biodiversity of deep-sea canyons and their underestimation as true ecosystem hotspots (C) 2010 Elsevier Ltd All rights reserved
Deep-sea Research Part I-oceanographic Research Papers (0967-0637) (Pergamon-elsevier Science Ltd), 2010-12 , Vol. 57 , N. 12 , P. 1561-1572

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00023/13419/14034.pdf
DOI:10.1016/j.dsr.2010.09.002
http://archimer.ifremer.fr/doc/00023/13419/

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : The Maguelone shore extends along the northern coast of the Gulf of Lions margin, West of the Rhone delta and East of some high gradient coastal streams that have been providing most of the elastic sediments to the Gulf of Lions margin since the early Miocene. This 10 km wide area comprises an onshore small coastal watershed (15 km long) in low-lying carbonate hills, kilometer wide marshes, sandy beach and shoreface featuring local low sedimentation. Deposit architecture in such a coastal zone records dynamics of incised valley fill under the influence of rivers and wave/current hydrodynamics in a microtidal environment during an eustatic cycle.;A detailed analysis of about 250 km of very high resolution seismic profiles, tens of cores and outcrops data revealed the evolution of the Maguelone coastal system from Late-Quaternary to present-day. It highlighted also dominant denudation processes in the upstream catchments associated to the formation of incised valley seaward during Quaternary. Combination of this inherited morphology together with hydrodynamics controlled the lagoonal environment evolution since the last transgression. In particular, the Maguelone shore is characterized by the formation of built-over-rias lagoonal systems and records an evolution from partially protected lagoon to isolated lagoon environment. These two stages of lagoon evolution correspond to distinct deposit environments. Correlation of fauna contents with deposit geometry improves lagoonal environment models.
EISSN: 1777-5817

hal-00486370
https://hal.archives-ouvertes.fr/hal-00486370
DOI : 10.2113/gssgfbull.181.2.211

Éditeur(s) : Mercator Ocean
Résumé : Face to the lack of data to assess precisely the spatial distribution of catches and fishing effort and for the environmental characterization of the fishing area, Ifremer has been implemented since 2005 a new project, Recopesca. It consists in fitting out a sample of voluntary fishing vessels with sensors recording data on fishing effort (and at mid-terms catches) and physical parameters such as temperature or salinity. Recopesca aims at setting up a network of sensors, for scientific purposes, to collect data and improve resources assessment and diagnostics on fisheries, and environmental data required for ecosystem-based management initiatives. The challenge was to develop sensors with no trouble for the fishermen, tough enough to be fixed up on fishing gears, self powered and autonomous. Insofar as the sample of targeted vessels intends to be representative of all the metiers and fleets, the sensors are modular and scalable to collect new data. Different sensors have been implemented: (i) a temperature-salinity sensor, able to record physical parameters, depth and duration of immersion, for passive and active gears, and (ii) a specific sensor to record number or length of passive gears. A GPS monitors the position of the vessels and the temperature or salinity profiles and series. Each sensor is equipped with a radio device transferring the data to a receiver on-board, called “concentrator” that sends the data to Ifremer central databases by GPRS. An anti-rolling weigh-scale has been developed and is currently on test to record catches per species and fishing operation. The presentation will show the first data and results of this participative approach.
Mercator Ocean - Quarterly Newsletter (Mercator Ocean), 2010-04 , N. 37 , P. 40-48

Droits : 2010 Mercator Ocean
http://archimer.ifremer.fr/doc/00024/13500/10514.pdf
http://archimer.ifremer.fr/doc/00024/13500/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The interpretation of high-resolution 2D marine seismic profiles together with the analysis of sea-bottom cores allowed a stratigraphic and structural framework of the Provence continental shelf to be proposed. The integration of onshore and offshore stratigraphy, structure and geomorphology provided new insights into Messinian paleotopography and paleohydrography. A geological map of the offshore Provence continental shelf, isobath map of the base Plio-Quaternary surface are presented for the first time in this area. The base Plio-Quaternary surface is a polyphased unconformity that is composed of deep canyons developed by fluvial erosion during the Messinian event, and wave-cut surfaces formed during post-Messinian transgressions. The study evidenced a deep, E-W-trending canyon (Bandol canyon) connected to the head of the Cassidaigne canyon, and filled with up to 600 m-thick Plio-Quaternary deposits. The development of canyons on the Provence margin during the Messinian event was dominantly controlled by the lithology and structure of pre-Messinian formations. A map of the Messinian paleo-drainage network is proposed to explain the presence of deep canyons in the Eastern area and the lack of incision in the Western area. An underground karst drainage scheme is proposed, linked with the current submarine Port-Miou spring.
ISSN: 0264-8172

insu-01009592
https://hal-insu.archives-ouvertes.fr/insu-01009592
https://hal-insu.archives-ouvertes.fr/insu-01009592/document
https://hal-insu.archives-ouvertes.fr/insu-01009592/file/Mar-Pet-Tassy.pdf
DOI : 10.1016/j.marpetgeo.2014.05.001