Éditeur(s) : HAL CCSD SAGE Publications
Résumé : International audience
The distribution of redox-sensitive elements (V, U, Mo, Mn) was studied in a sedimentary archive of the Pierre-Blanche lagoon encompassing 3500 years of sedimentation. Between 240 and 255 cm (i.e. between 0 and 350 cal. ad) in the core, there was a dark layer with no mollusc shells. Enrichments of V, U and Mo and depletion of Mn were observed in this layer compared with overlying and underlying sediments. This was attributed to the occurrence of anoxia in bottom water or at the sediment/water interface during the Roman period. This episode was concomitant with the formation of a sandy barrier, which now isolates the lagoon from the sea. Our results suggest that the isolation of the lagoon, which was deeper in the period concerned than at present, favoured stagnation of the water. Combined with the excess nutrient inputs because of human activities in Lattara harbour, stagnation may have caused anoxia in bottom water at least in some parts of the Palavasian lagoon system. Bottom conditions nevertheless remained sufficiently reducing for the accumulation of U and Mo to persist until around 800 cal. ad. Although the lagoon has been hyper-eutrophic since at least the middle of the 20th century and although anoxia occurs frequently in summer, redox proxies show no evidence for their occurrence. The shallow water and associated resuspension and reoxidation events explain the lack of V, Mo and U enrichment in recent sediments.
ISSN: 0959-6836

hal-01062151
https://hal.archives-ouvertes.fr/hal-01062151

Éditeur(s) : HAL CCSD Inter-Research
Résumé : Precise knowledge of lifetime migrations is vital in exploited fish species, since all essential habitats must be protected to maintain sustainable stock levels. The present study used multi-element otolith fingerprints of the gilthead sea bream Sparus aurata (L.) to discriminate its main juvenile and adult habitats in the Languedoc-Roussillon region (Gulf of Lions, northwest Mediterranean) and infer the lifetime migrations of 12 individuals from the area (11 from the present day and 1 from the Roman era). This allowed for the first time the identification of key habitats for the successful completion of the species' life cycle in the Gulf of Lions, and the connectivity between them. Our results revealed that lagoon use by S. aurata is probably ancient (>2500 yr) and confirmed its current commonness. Yet, although most observed migration patterns were in accordance with the migratory behavior previously described for the species, strong inter-individual variations and new patterns in habitat use were detected. At the juvenile stage, a preference for shallow lagoons with low salinities was evidenced. Nevertheless, the first year of life can also be successfully completed in marine conditions. At the adult stage, lagoon use was shown to occur until at least age 4 yr, with periods of lagoon residency of up to 11 mo in a year, often including winter months. Because overwintering in the lagoons was previously thought to be impossible for S. aurata due to low temperatures, this finding has important implications for future stock management, especially since the species breeds in winter.
Marine Ecology Progress Series

hal-00682003
https://hal.archives-ouvertes.fr/hal-00682003
DOI : 10.3354/meps09444

Éditeur(s) : HAL CCSD European Geosciences Union (EGU) European Geosciences Union
Résumé : The Moroccan Mediterranean coast is located in one of the area's most vulnerable to extreme weather events or tsunami hazards. The objective of this research is to reconstruct the historical extreme submersion-event record using sea-induced deposits preserved in coastal lagoon. The Nador lagoon is the largest Moroccan lagoon (115 km2). It is located along the western Mediterranean, which has a high cyclogenetic character and is exposed to tsunamis from the Alboran Sea. The sandy barrier which separates the lagoon from the Mediterranean Sea is marked by much overwash, which indicate how intensely it has been exposed to the adverse sea events through history. Using the UWITEC© gravity coring platform, an undisturbed MC4.5 core (1.15 m long) was successfully sampled in the studied lagoon. To identify extreme sea events, a multi-proxy approach was applied combining sedimentological and geochemical data. Three paleoevents were identified; all of them are concentrated over the last 500 years, and the most recent event corresponds to the 1889 storm. For the others deposits, it is difficult to determine exactly their origin; however, the high frequency of storm events over the relevant period and the absence of historical tsunamis evidence is more in favor of the meteorological origin.
ISSN: 1561-8633

hal-01146451
https://hal.archives-ouvertes.fr/hal-01146451
DOI : 10.5194/nhess-15-203-2015

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The barrier reef tract of New Caledonia is the second largest in the world enclosing lagoons of variable width. The Late Quaternary evolution of these barrier reefs and lagoons is poorly known. A recent high resolution seismic and multibeam bathymetry survey was carried out in the south-western lagoon from shoreline to open ocean across the barrier reef pass systems to perform sequence stratigraphy and to better understand the Quaternary evolution of the lagoon. Two depositional sequences bounded by type-1 erosional surfaces can be identified. The bounding surfaces delineate the bottom of two generations of incised valleys. System tracts comprising a complete succession of regressive, lowstand, transgressive and highstand tracts were observed only in the upper sequence. Chronostratigraphic and sedimentological interpretations of the seismic data are based on correlations with the chronology defined in the nearby cores drilled through the reefs and in the gravity cores previously recovered in the inner lagoon. Interpretation of seismic data is also carried out on the basis of correlation with multibeam bathymetric data. Our results indicate that the history of the New Caledonian lagoon probably does not exceed 200ka marked by two or three brief episodes each of immersion of about ten thousand years. The bathymetric data reveal that during successive low sea level stands, the lagoon was dependent upon erosional fluvial networks. The deep fluvial valleys were connected to the continental slope through the passes. Seismic records reveal that upstream palaeo-channels are not connected to the modern coastal rivers. In contrast, many aggrading deposits, including numerous stacking channels, and extending across the proximal part of the outer lagoon, can be identified. Examination of drainage network morphology suggests a progressive tilt of the outer lagoon. Such evolution reveals that the Nouméa lagoon which is one of the widest in the world is an exceptional modern example of a rimmed shelf providing data to analyze the past counterparts.
ISSN: 0031-0182

insu-00338953
https://hal-insu.archives-ouvertes.fr/insu-00338953
DOI : 10.1016/j.palaeo.2008.08.012

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : A study combining very high resolution seismic and sediment core data has been carried out on the Thau lagoon (Mediterranean coast, microtidal setting, SE France) in order to understand more clearly the dynamics and Holocene chronology of its closure through the different stages of its filling. One main seismic unit (U2) has been defined into the infill, above the rocky basement (U0) and a composite unit U1, which is interpreted as remnants of Pleistocene fluvial terraces or/and to early marine Holocene deposits. Unit U2, that reaches locally 9 m in thickness, rests conformably on U1 in the central part of the lagoon and onlaps U0 or U1 close to the edge of the lagoon. It is divided in two sub-units, U2-1 and U2-2. U2-2 rests paraconformably on U2-1 in the central part of the lagoon where the infill is the thickest, while a marked erosional unconformity is observed between U2-1 and U2-2 on topographic highs of the basement and on the seaward edge of the lagoon. A total of seven elementary sequences have been observed in U2-1 and U2-2.;According to core data, U2 consists in a series of mud-dominated sequences, with shell fragments dispersed at the base. The vertical distribution of the fauna into U2-1 and U2-2 reveals a lagoonal environment. However in U2-1, marine species are more abundant in the south of the lagoon. C-14 AMS dating provides three ages: similar to 6000 cal yr B.P. in the lower part of U2-1 on CAL1, 5400 cal yr B.P. just above the boundary between U2-1 and U2-2 on CAL4, similar to 3000 cal yr B.P. in the middle of U2-2 on CAL4.;A scenario to explain the lagoon infill stratigraphy and geometry is proposed. The beginning of the lagoon infill occurred with the initiation of the barrier construction, as soon as the sea-level rise slowed down significantly, i.e. between 7000-6000 yr B.P. The sediment-fill began into the back-barrier system, with a high rate of sedimentation for U2-1, according to the radiocarbon data. At 5400 yr B.P., the barrier is assumed to be totally closed leading to the deposition of the fully lagoonal U2-2 succession. The unconformity between U2-1 and U2-2 is interpreted as the result of a rapid landward retreat of the barrier. This severe retreat could be related to climate forcing and/or brutal change in sediment discharge driven by the Rhone River, which is the main sediment source of the longshore drift. In this scenario, the last sub-unit, U2-2, represents most of the late Holocene infill. In this framework, the elementary sequences observed in U2-2 could be related to high frequency climate changes of about 1000-1500 years periodicity according to C-14 dates.
EISSN: 1777-5817

hal-00486386
https://hal.archives-ouvertes.fr/hal-00486386
DOI : 10.2113/gssgfbull.181.2.197

Éditeur(s) : HAL CCSD Laboratoire Arago
Résumé : International audience
The analysis of the C-O stable isotope composition of coral reef fish otoliths from Taiaro, a French Polynesian atoll normally isolated from the Pacific Ocean, has been performed to address two main questions. The first is to confirm previous results which suggest that a lagoonal coral reef fish population is able to achieve its ontogenetic cycle without any open ocean phase. If so, are O isotopic values of otoliths an indicator of temperature fluctuations in the tropical Pacific Ocean related to climate change and in particular temperature variations of water masses? δ18O and δ13C values on both lagoon and open ocean fish otoliths caught in 2006 indicated clearly that O-isotopes reached the isotopic equilibrium; in contrast, all δ13C values exhibited a strong isotopic disequilibrium related to metabolic activity. Stable isotope compositions revealed a clear differentiation between fish from lagoons and those from the open ocean (with a δ18O enrichment of 1 ‰ in favour of the lagoon). This confirmed a lack of connectivity between habitats and that fish from lagoon lived their entire life cycle in the lagoon. Both δ18O and δ13C data indicated differences between nucleus and edge signatures with changes in fish behavior from the larval life to adulthood (habitat, diet, etc.), and a clear adaptation of dietary behavior of lagoon fish. The comparison of the 2006 data set with those of 1994 showed that environmental conditions were stable in the lagoon, leading to a very narrow range of variations in the δ18O values. δ18O of fish otoliths of the open ocean exhibited a wider variation (+0.25 ‰) between 1994 and 2006, suggesting a decrease in temperature linked to a change of SST, which can be interpreted in terms of climate change associated with El Nino Southern Oscilation (ENENSO). These differences could also be due to a switch of habitats during the life cycle of fish from the open ocean.
ISSN: 0240-8759

hal-01162477
https://hal-univ-perp.archives-ouvertes.fr/hal-01162477

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : In the present work, a biophysical dispersal model is used to understand the role of the physical environment in determining reef fish larval dispersal patterns in the South-West Lagoon of New Caledonia. We focus on a reef fish species, the humbug damselfish Dascyllus aruanus, to investigate seasonal variability of simulated larval retention at the scale of a reef patch and at the scale of the lagoon, and to explore links between larval retention and wind variability. The model shows that retention exhibits considerable temporal variability and periodically reaches values much larger than anticipated. Non-zero larval settlement occurs over a large part of the lagoon. Nevertheless, settlement values decrease quickly away from the natal reef and mean dispersal distances are of order 25-35 km. Cross-correlation analyses indicate that weather conditions characterized by strong south east trade winds lead to low retention rates at both local (reef) and regional (lagoon) scales. By contrast, subtropical weather conditions characterized by weak winds result in high retention rates. These results suggest that large-scale weather regimes can be used as proxies for larval retention of the humbug damselfish in the South-West Lagoon of New Caledonia. Nevertheless, relatively small mean dispersal distances suggest that meta-population dynamics occur on relatively small spatial scales.
Progress In Oceanography (0079-6611) (Pergamon-elsevier Science Ltd), 2014-03 , Vol. 122 , P. 105-115

Droits : 2013 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00170/28115/26326.pdf
DOI:10.1016/j.pocean.2013.12.006
http://archimer.ifremer.fr/doc/00170/28115/

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : The Maguelone shore extends along the northern coast of the Gulf of Lions margin, West of the Rhone delta and East of some high gradient coastal streams that have been providing most of the elastic sediments to the Gulf of Lions margin since the early Miocene. This 10 km wide area comprises an onshore small coastal watershed (15 km long) in low-lying carbonate hills, kilometer wide marshes, sandy beach and shoreface featuring local low sedimentation. Deposit architecture in such a coastal zone records dynamics of incised valley fill under the influence of rivers and wave/current hydrodynamics in a microtidal environment during an eustatic cycle.;A detailed analysis of about 250 km of very high resolution seismic profiles, tens of cores and outcrops data revealed the evolution of the Maguelone coastal system from Late-Quaternary to present-day. It highlighted also dominant denudation processes in the upstream catchments associated to the formation of incised valley seaward during Quaternary. Combination of this inherited morphology together with hydrodynamics controlled the lagoonal environment evolution since the last transgression. In particular, the Maguelone shore is characterized by the formation of built-over-rias lagoonal systems and records an evolution from partially protected lagoon to isolated lagoon environment. These two stages of lagoon evolution correspond to distinct deposit environments. Correlation of fauna contents with deposit geometry improves lagoonal environment models.
EISSN: 1777-5817

hal-00486370
https://hal.archives-ouvertes.fr/hal-00486370
DOI : 10.2113/gssgfbull.181.2.211

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Region Gdansk Pomerania is an excellent geographic area for the development of yachting. Gdansk Bay and the Vistula Lagoon is characterized by very good weather conditions. Numerous advantages of anthropogenic and tourist resorts strengthen the attractiveness of the coast. The marina recently ended in Gdansk, Sopot and Gdynia create very good conditions for the development of yachting. The combination of the Gulf of Gdansk by the river network and channels Żuławy of the Great Masurian Lakes promotes the development of yachting in both the Gulf of Gdansk and Masurian Lake region. However, new infrastructure investments, realized with funding from the EU, like ‘Loop Żuławska’ and the new marina, leading to an increase in tourist traffic and threats to existing reserves and landscape parks. Another problem is the lack of regulation of the right on the crossing of the Strait of Baltiysk, leading from the Vistula Lagoon on the Baltic Sea, which is located in the territorial waters of Russia. The concentration of investments in the region of Żuławy contrasts with too little spending on development of tourist infrastructure in the Hel Peninsula. There are large disparities in tourist traffic. Tourism in Hel Peninsula significantly exceeded the absorption of tourism in the region and leads to the degradation of the local environment. In addition, the seasonality of tourism on the coast favours the trend of maximizing profit tourism enterprises. New, designed ditch the Vistula Spit, which connects directly to the Vistula Lagoon from the Baltic Sea, bypassing the Russian territorial waters, can lead to serious ecological changes.
La région de Gdansk en Poméranie est une excellente zone géographique pour le développement du yachting. La baie de Gdansk et la lagune de la Vistule se caractérisent par de très bonnes conditions climatiques. Divers avantages anthropiques et stations touristiques renforcent l’attractivité de la côte.Les marinas nouvellement terminées à Gdansk, Sopot et Gdynia, créent de très bonnes conditions pour le développement du yachting. La combinaison du golfe de Gdansk, du réseau fluvial et des canaux Żuławy qui relient les Grands Lacs de Mazuries, favorise le développement du yachting dans le golfe de Gdansk et la région des lacs. Les nouveaux investissements dans les infrastructures, réalisés grâce à des financements de l’Union européenne, tels "Loop Żuławska" et la nouvelle marina, conduisent à une augmentation de l’activité touristique qui menace les réserves existantes et les parcs naturels. L’autre problème est l’absence de réglementation relative au droit de passage dans le détroit de Baltiysk, menant de la lagune de la Vistule, qui est située dans les eaux territoriales de la Russie. Entre la concentration des investissements dans la région de Żuławy et les faibles dépenses pour le développement de l’infrastructure touristique dans la péninsule d’Hel, il existe de grandes disparités dans le trafic touristique. Les infrastructures touristiques de la péninsule d’Hel ne sont pas en mesure d’absorber les flux touristiques de la région et la situation conduit inéluctablement à la dégradation de l’environnement. La situation de la lagune de la Vistule, dont les eaux sont partagées entre la Russie et la Pologne, peut entraîner de graves changements écologiques.
Gdańsk
Pologne
Poméranie
Hel
Zulawy

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10762
http://journals.openedition.org/etudescaribeennes/10762

Éditeur(s) : HAL CCSD Elsevier
Résumé : Finding records of past catastrophic storm events is essential to evaluate the long term climatic evolution in a given coastal area. This question has been addressed by the study of sediment cores sampled in a small coastal lagoon of the French Mediterranean coast (Pierre Blanche lagoon). Two cores were studied in detail and revealed the presence of three main storm events. The sedimentation rates calculated using the CFCS Pb-210 model, in agreement with Cs-137 data, are 3 +/- 0.4 and 4.2 +/- 0.7 mm y(-1) near the border and in the center of the lagoon respectively. This suggests that the 0.6 m deep lagoon could be filled with sediments over the next 150 yr. Our study shows that storm events can be characterized in sedimentary sequences identified by facies, grain size and faunal assemblages (lagoonal and marine species). Comparison of Pb-210, C-14 chronology and historical accounts suggest that the three identified storm events took place in 1742, 1839 and 1893 A.D. (i.e. about one catastrophic event per century).
ISSN: 0025-3227

hal-00411189
https://hal.archives-ouvertes.fr/hal-00411189
DOI : 10.1016/j.margeo.2008.03.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
With only a narrow opening through the Gibraltar and Suez Canals, the Mediterranean Sea is one of thelargest semi-enclosed seas. The marine flora and fauna are some of the richest in the world, relative to itssize, particularly in the coastal habitats, which are also characterized by numerous endemic speciesalthough the introduction of non-indigenous species threatens its rich and unique biodiversity. Followingthe opening of the Suez Canal, and in combination with shipping and aquaculture activities, nonindigenousspecies (NIS) introduction has had measurable impacts on the Mediterranean. Lagoon ecosystemsalong the French coastline, with approx. 100 NIS identified, are considered hot-spot areas forthese species. Rapid assessment sampling for sessile benthic species together with DNA barcoding is arapid, easy and cheap method to detect non-indigenous species. Two nearby and different ecosystemswere sampled for invertebrate species: Saint-Nazaire lagoon, a Special Protection Area within the Natura2000 Network and Canet port, a marina in a small village. The DNA barcoding tool for species identificationwas used for confirming the taxonomy. This showed that, despite the Saint-Nazaire Lagoonclassification within the Natura 2000 network, it is already contaminated with a single NIS that wasfound in high densities and is clearly beginning to dominate the system. It is proposed that a rapidassessment of the sampled environment and the DNA barcode approach are efficient and can providesufficient information on the new target species to be used in conservation planning and ongoingmanagement efforts.
ISSN: 0272-7714

hal-01488926
https://hal-univ-perp.archives-ouvertes.fr/hal-01488926
DOI : 10.1016/j.ecss.2017.02.004

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
While the fire coral Millepora platyphylla is an important component of Indo-Pacific reefs,where it thrives in a wide range of environments, the ecological and biological processesdriving its distribution and population structure are not well understood. Here, we quantifiedthis species' population structure in five habitats with contrasting hydrodynamic regimes inMoorea, French Polynesia; two in the fore reef: mid and upper slopes, and three in thelagoon: back, fringing and patch reefs. A total of 3651 colonies of fire corals were mappedand measured over 45,000 m2 of surveyed reef. Due to the species' sensitivity to fragmentationin response to strong water movement, hydrodynamic conditions (e.g. waves, pass andlagoonal circulation) corresponded to marked differences in colony size distributions, morphologyand recruitment dynamics among habitats. The size structure varied among reefhabitats with higher proportions of larger colonies in calm nearshore reefs (fringing andpatch reefs), while populations were dominated by smaller colonies in the exposed forereefs. The highest densities of fire corals were recorded in fore reef habitats (0.12±0.20 n.m-2) where the proportion of recruits and juveniles was higher at mid slope populations(49.3%) than on the upper slope near where waves break (29.0%). In the latter habitat, mostcolonies grew as vertical sheets on encrusting bases making them more vulnerable to colonyfragmentation, whereas fire corals were encrusting or massive in all other habitats. Thelowest densities of M. platyphylla occurred in lagoonal habitats (0.02±0.04 n.m-2) characterizedby a combination of low water movement and other physical and biological stressors.This study reports the first evidence of population structure of fire corals
ISSN: 1932-6203

hal-01561659
https://hal-univ-perp.archives-ouvertes.fr/hal-01561659
https://hal-univ-perp.archives-ouvertes.fr/hal-01561659/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01561659/file/millepora%20platyphylla.pdf
DOI : 10.1371/journal.pone.0173513

Éditeur(s) : HAL CCSD Tecpar
Résumé : International audience
The general structure and organization of the shallow water (<1.5 m) fish assemblages were studied in two southern Brazilian ecosystems, a bay and a lagoon, under different marine or continental influences. The abiotic factors were measured to define the hydrology of the sites and the biotic descriptors were evaluated to characterize the assemblage structures. Transparency, salinity and organic matter were the abiotic factors which best distinguished the sites. A total richness of 69 species was observed. Ecological guilds, density, diversity and evenness indices values were different in each site. Hydrodynamism and geomorphology determined the structure and the organization of the fish assemblages in these shallow waters. It was observed that variations in the hydrological attributes generated by the marine or continental water movements are able to alter the conditions in the lagoon more quickly and at more regular frequencies than those in the bay.
ISSN: 1516-8913

hal-00753018
https://hal.univ-antilles.fr/hal-00753018
https://hal.univ-antilles.fr/hal-00753018/document
https://hal.univ-antilles.fr/hal-00753018/file/BRAZILIAN_2010.pdf

Éditeur(s) : Universite Montpellier II
Résumé : Since 1980, the expansion of a green macro-alga: Valonia aegagropila (C Agardh) is observed in Salses-Leucate lagoon (France). It is currently distributed in the north of the lagoon with important biomasses (40 gDW/m²) eroding the cover of Zostera noltii. The free form of the alga can be transported with the surface or bottom currents depending on seasons. It multiplies mainly by vegetative reproduction. There are few studies on the ecophysiological capacities of V. aegagropila. This work tries to answer why (physiological adaptation) and how (mechanical process of transport) the alga invaded the lagoon, with an approach including observations, experiments in controlled environment and biological and hydrodynamic models. The growth capacities depend on temperature and light intensities, the nutrients absorption rates and internal nitrogen and phosphorus internal quotas were measured and modelled using a Droop model based on internal quota. Vertically transport was studied with laboratory experiments and measurements of biomass transport were made into the lagoon. The biological model (growth, vertical transport, mortality) was coupled to the MARS 3D hydrodynamic model with a meshgrid of 160m. The results show an adaptation of the alga to low availability of phosphorus and an annual growth of biomass controlled by the availability of nutrient during winter. The alga seems to occupy the whole zones where growth is optimal and the risk of invasion of the southern part of the lagoon is limited. This work opens on research prospects on an ecological model (confronting physiological capacities and competition of V. aegagropila, Zostera noltii, green algae and primary production), new physiological experiments, ecological observations and potential valorisation of V. aegagropila.
Depuis 1980, est observée dans l'étang de Salses-Leucate l'expansion d'une macro-algue verte : Valonia aegagropila (C. Agardh). En 2004, elle était présente sur la presque totalité de la moitié nord de la lagune avec des biomasses importantes (jusqu'à 600 gPS/m²). L'algue envahit et érode également la couverture d'herbiers garant de la biodiversité, de la productivité et de la stabilité de l'écosystème. V. aegagropila se reproduit essentiellement de manière végétative (fragmentation des thalles) et possède la particularité de retenir de l'oxygène de la photosynthèse dans sa structure sphérique. Cet oxygène piégé lui donne la possibilité de mouvement sur la verticale et d'être transportée dans le domaine par les courants. Les conditions physico-chimiques de l'étang présentent de fortes variations saisonnières en salinité, en température et en turbidité, ainsi que des apports nutritifs faibles : la production primaire est principalement limitée par le phosphore. Il existe malheureusement peu d'informations sur V. aegagropila ainsi que trop peu de connaissances sur son écophysiologie. Elle semble vivre dans des milieux plutôt oligotrophe dans des régions tropicales à sub-tropicales. Ce travail basé sur une approche d'observations de terrain, d'expérimentations en milieu contrôlé (en laboratoire) et de modélisation des processus, a permis d'une part d'explorer les capacités adaptatives physiologiques de V. aegagropila aux conditions environnementales de l'étang et d'autre part de mettre à jour les modes de fonctionnement de la dynamique spatio-temporelle de la population. Les capacités de croissance ont été mesurées sur un large spectre de température et de lumière. Les capacités d'absorption des sels nutritifs dans l'eau et les facultés de l'algue à stocker l'azote et le phosphore dans ses tissus ont également été étudiées. D'autre part, un modèle de dynamique des populations a été conceptualisé puis développé. Les processus pris en compte dans ce modèle sont la croissance de l'algue (modèle à quota interne), la flottabilité de l'algue et la mortalité par surdensité. Ces processus ont été paramétrés en majeure partie par des expérimentations réalisées en laboratoire. Ce modèle 0D a par la suite était couplé au modèle hydrodynamique MARS3D (modèle Ifremer) mis en place sur la lagune de Salses-Leucate, utilisant deux grilles de calcul (160m ou de 80m de résolution). Les simulations réalisées permettent d'appréhender les capacités spatio-temporelles de la croissance de l'algue dans l'étang, le turnover annuel de la biomasse totale et les attracteurs de biomasse du système sous différents évènements météorologiques. Ces résultats sont comparés avec les répartitions cartographiques de la population observées in situ en 1999 et 2004 et des flux de biomasses mesurés au cours d'observations de terrain entre juin 2003 et septembre 2004. L'ensemble des résultats montre d'une part une adaptation de l'algue à évoluer dans un milieu pauvre en phosphore et d'autre part une croissance annuelle de la biomasse totale qui est principalement contrôlée par les apports hivernaux en sels nutritifs dans la lagune. Les résultats des simulations montrent également que V. aegagropila semble occuper à présent la majeure partie des zones favorables à sa croissance. Il est également montré que si sa capacité de mouvement peut favoriser la dispersion d'individus dans la lagune et accélérer la croissance de la population pour de faibles biomasses initiales, cette même capacité de mouvement joue plutôt un rôle de régulation de la population lorsque la biomasse totale devient importante. On peut penser que le risque de colonisation de l'herbier à zostère de la partie sud de la lagune (bassin de Salses) est limité. Ce travail ouvre enfin des perspectives de recherche sur l'amélioration du modèle de dynamique des populations de l'espèce, sur de nouvelles expérimentations à réaliser ou encore sur la surveillance écologique du milieu. Des propositions sont faites pour concevoir un modèle écologique confrontant les capacités physiologiques des macrophytes (algues vertes, Valonia et zostères) afin d'apréhender les phénomènes de compétitions et les modes de fonctionnement du réseau trophique de la lagune de Salses- Leucate. Des pistes sur la valorisation de la matière algale de V. aegagropila sont enfin proposées.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-2453.pdf
http://archimer.ifremer.fr/doc/00000/2453/

Résumé : It is about an article presenting the institute, its history, its presence and the projects it leads in New Caledonia. After a first part of general presentation of Ifremer a focus is placed on the strengthening of the presence of the institute in New Caledonia. 3 points are developed by L. Loubersac on the in-house organization, the strategy and examples of works realized within the framework of the buildind up of the lagoons integrated project. Then a spotlight is offered toward 3 projects: DEDUCTION 2 which aims at optimizing the performances of the shrimp aquaculture sector (T. Laugier), AMICAL which focuses on micro-algae aquaculture (L. Chim) and AMBIO centred on the monitoring and the definition of performance indicators for management of Marine Protected Areas and zones Registered on the World heritage (D. Pelletier). The synthesis of this article is realized by S. Chopot of the New Caledonia environment magazine.
Il s’agit d’un article présentant l’institut, son historique, sa présence et les projets qu’il mène en Nouvelle-Calédonie. Après une première partie de présentation générale de l’organisme un focus est placé sur le renforcement de la présence de l’Ifremer en Nouvelle-Calédonie. 3 questions sont posées à L. Loubersac sur l’organisation en interne, la stratégie et des exemples de travaux réalisés dans le cadre du chantier lagons. Puis un coup de projecteur est porté sur 3 projets : Déduction 2 qui vise à optimiser les performances de la filière crevetticole (T. Laugier), AMICAL qui se focalise sur la culture de micro-algues (L. Chim) et AMBIO axé sur le suivi et la définition d’indicateurs de performance des modes de gestion des Aires Marines protégées et des zones Inscrites au Patrimoine Mondial (D. Pelletier). La synthèse de cet article est réalisée par S. Chopot de la revue Environnement Nouvelle-Calédonie.
Environnement Nouvelle-Calédonie, 2013-05 , N. 20 , P. 60-89

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00200/31093/29501.pdf
http://archimer.ifremer.fr/doc/00200/31093/

Éditeur(s) : Elsevier
Résumé : The gametogenic cycle and the reproductive effort of the blacklip pearl oyster, Pinctada margaritifera, cultivated in Takapoto lagoon were studied for a 1-year period (March 1997-April 1998) by bimonthly observations of gonadal sections, dry tissue weights and gonadal index in a population of pearl oyster composed of three age-groups. pearl oysters attained sexual maturity in the end of their first year (height approximate to 40 mm), implying that P. margaritifera is a late-maturing species in comparison with other Pteriidae. This species was also confirmed to be a marked protandrous successive hermaphrodite in culture, with 100 % of males at first maturity and 75 % in older pearl oyster (height > 120 mm). The general pattern of gametogenic activity, fairly synchronous in both sexes, was comparable with that of other tropical bivalves: reproduction occurs continuously throughout the year with a maximal activity during the warm season (November-May). No resting period was observed. Quantitative growth data showed that P. margaritifera exhibits an annual synchronised polymodal spawning pattern, with two spawning peaks in age-group I (height approximate to 70 mm) and five in age-groups II (height approximate to 100 mm) and III (height approximate to 120 mm). Spawning was sometimes incomplete, nevertheless a clear relationship between gamete production (P-R, g) and size (height H, mm) was obtained: P-R = 5.26 x 10(-7) H-2.91 (R-2 = 0.99, p < 0.05). Estimation of P-R was used to calculate the annual reproductive effort in P. margaritifera. Reproductive effort (%) was similar to those calculated for temperate species and showed a progressive increase with the age of pearl oyster, from 7 % in age-group I to 38 % in age-group III. This study showed that, in a fairly stable tropical environment such as the Takapoto lagoon, P. margaritifera is a multiple spawner, which uses an opportunistic reproductive strategy, allowing investment all year around, of any surplus energy into gamete production. Surplus energy is ensured by the high pumping rates developed by this non-symbiotic bivalve to succeed in low seston conditions. (C) 2000 Ifremer/Cnrs/Inra/Ird/Cemagref/Editions scientifiques et medicales Elsevier SAS.
Le cycle et l'effort de reproduction de l'huître perlière à lèvres noires, Pinctada margaritifera, cultivée dans le lagon de Takapoto, ont été étudiés sur une période annuelle (de mars 1997 à avril 1998), par un suivi bimensuel des stades de maturation et des indices gonadiques, sur une population en élevage composée de trois groupes d'âge (1, 2 et 3 ans). Cette étude a confirmé que P. margaritifera est une espèce qui se reproduit tardivement par rapport aux autres Ptériidés (elle atteint sa maturité sexuelle à la fin de sa première année, pour une hauteur approximative de 40 mm). Par ailleurs, elle présente, en élevage, une protandrie marquée (100 % de mâles à première maturité, 75 % pour des huîtres âgées de trois ans). Le schéma général de sa gamétogenèse, relativement synchrone dans les deux sexes, est comparable à celui des autres bivalves tropicaux : la reproduction est quasiment continue (aucune période de repos sexuel) avec une activité accrue en saison chaude (de novembre à mai). L'analyse des variations du poids de la gonade suggère l'existence de deux pics d'émission de gamètes chez les huîtres de un an et cinq pics chez les huîtres de 2 et 3 ans (cycle de reproduction de type polymodal). Bien que ces émissions de gamètes soient parfois incomplètes, une relation entre la production de gamètes (PR, en g) et la taille de l'huître perlière (hauteur, H, en mm) a été établie : PR = 5,26 x 10-7 H2,91 (R2 = 0,99, p < 0,05). Ces résultats ont permis de calculer l'effort de reproduction de P. margaritifera à Takapoto et sur un bilan annuel : il augmente avec l'âge de l'huître perlière de 7 % pour le groupe d'âge I à 38% pour le groupe d'âge III. Ces valeurs annuelles sont similaires à celles calculées chez les bivalves de milieux tempérés. Cette étude a donc montré que, dans un environnement tropical assez stable tel que celui du lagon de Takapoto, P. margaritifera présente une reproduction continue, avec plusieurs pics d'émission de gamètes par an. Cette stratégie « opportuniste » permet l'investissement, de tout surplus d'énergie en production de gamètes, tout au long de l'année. Malgré la faible concentration du milieu en nourriture, ces surplus d'énergie sont assurés par les fortes capacités de filtration développées par cette espèce tropicale non-symbiotique.
Aquatic Living Resources (0990-7440) (Elsevier), 2000 , Vol. 13 , N. 1 , P. 37-48

Droits : 2000 Ifremer/Cnrs/Inra/Ird/Cemagref/Éditions scientifiques et médicales Elsevier SAS
http://archimer.ifremer.fr/doc/2000/publication-1391.pdf
DOI:10.1016/S0990-7440(00)00135-2
http://archimer.ifremer.fr/doc/00000/1391/

Éditeur(s) : Montpellier SupAgro
Résumé : One of the main challenges in ecology is to understand how global changes affect biodiversity and what are the consequences on ecosystem functioning. In this perspective, the functional diversity of communities is a cornerstone since it allows linking environment, community structure and ecosystem properties. The aim of this thesis is thus to improve the understanding of functional diversity dynamic (i) in relation to natural variability of environmental conditions and (ii) under anthropogenic disturbances. As a first step we have developed a new methodological framework allowing to (1) describe fish functional niches based on functional traits, and (2) to quantify functional diversity within (α) and among (β) sites thanks to new indices. In a second step we have studied the spatiotemporal dynamic of the functional structure of fish and nektonic communities from the Terminos lagoon (Mexico). This tropical estuarine ecosystem is an appropriate ecological model for our problematic as it is characterized by a strong environmental variability, a high biological diversity and is under a strong human pressure. We have put in light the stability of the functional and trophic structures of communities along environmental gradients, despite a very strong species turnover. This stability is determined by the dominance of a couple of functional groups inside which species are replacing each others according to their environmental preferences. However, at a long-term scale, we have demonstrated a functional diversity loss in a part of the lagoon despite an increase of species richness. This paradox has to be related to the decrease of species associated to seagrass and the increase of more estuarine species.
Un des enjeux majeurs de l'écologie est de comprendre comment les changements globaux affectent la biodiversité et quelles en sont les conséquences sur le fonctionnement des écosystèmes. Dans cette perspective, la diversité fonctionnelle des communautés est un outil clé permettant de lier l'environnement, la structure des communautés et les propriétés écosystémiques. L'objectif de cette thèse est donc d'améliorer la compréhension de la dynamique de la diversité fonctionnelle (i) face à des conditions environnementales naturellement variables et (ii) face à des perturbations d'origine anthropique. Dans un premier temps nous avons mis en place un socle méthodologie nous permettant de (1) définir la niche fonctionnelle des poissons à partir de traits fonctionnels et (2) de quantifier les diversités fonctionnelles intra (α) et inter (β) échantillons avec de nouveaux indices. Dans un second temps nous avons étudié la dynamique spatio-temporelle de la structure fonctionnelle des communautés ichtyologiques et nectoniques peuplant la lagune de Terminos (Mexique). Cet écosystème estuarien tropical est un modèle d'étude adapté à notre problématique car il présente une forte variabilité environnementale, une forte diversité biologique et est sous forte pression anthropique. Nous avons mis en évidence une stabilité de la structure fonctionnelle et trophique des communautés face aux gradients environnementaux très marqués, et donc malgré un fort taux de remplacement des espèces entre les communautés. Cette stabilité est due à la dominance de quelques groupes fonctionnels à l'intérieur desquels les espèces se remplacent suivant leurs preferendums environnementaux. Néanmoins, à plus long terme, nous avons démontré qu'une portion de la lagune avait subi une perte de diversité fonctionnelle et ce malgré une augmentation de la richesse spécifique. Ce paradoxe est à relier au remplacement des espèces inféodées aux herbiers de phanérogames par des espèces plus estuariennes.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6178.pdf
http://archimer.ifremer.fr/doc/00000/6178/

Éditeur(s) : HAL CCSD
Résumé : International audience
The functioning of the Manche-à-Eau lagoon and of its mangrove environment with the population of marine fish of Guadeloupe has been studied since 1983, and particularly in the 2000s. This ecosystem supports a stable fish assemblage structure because of its twice a day turnover (14.8%) of marine water. It is a favorable and important site for the reproduction (38%) and growth (46%) of a large number of species. The life cycle of these fish species share, for the most part, an ecophase in the mangrove in brackish water and a marine ecophase outside the lagoon. The mangrove plays a vital role in the retention of continental nutrients. This facilitates the trophic exploitation of vegetal and animal detritus bases by the fish in high population density. The majority of populations present individuals reaching length at least 40% from the known maximum length for the species, although only 38.1% have individuals longer than 300 mm. The mangrove aids in the spawning activity of fish species (41% to 58% of the total abundance) and in the reproductive (maturation, migration) process (58% in density and 70% in biomass). The sedentary species lay their eggs in the mangrove, whereas the temporary species stay there during their trophic ecophase or after a genesic migration from the sea to assure sexual maturation for both sexes in the species.
Proceedings of the 61st Gulf and Caribbean Fisheries Institute
Gosier, Guadeloupe

hal-00755780
https://hal.univ-antilles.fr/hal-00755780
https://hal.univ-antilles.fr/hal-00755780/document
https://hal.univ-antilles.fr/hal-00755780/file/GCFI_61_2009_307-312.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The paleostorm history of coastal lagoon environments (Pierre Blanche Lagoon, central part of the Gulf of Lions) has been established by integrating clay mineralogy and geochemical analysis. Clay mineralogy combined with bulk major and trace elements concentrations allow for the definition of four different end members: the Mosson drainage basin, the sandy barrier, the biogenic and the anthropic components. The two main sedimentary sources of the lagoonal system are the Mosson drainage basin which has a high concentration of smectite and Al2O3, and the sandy barrier characterized by high contents of illite, chlorite, SiO2 and Zr. Smectite/(illite + chlorite), SiO2/Al2O3 and Zr/Al2O3 ratios can be used to reconstruct the past storm history of the Pierre Blanche Lagoon. Our results indicate that the sensitivities of the clay mineralogy and geochemistry proxies are different. These sensitivities could be related: 1) first, to the comparison between different grain size for geochemistry and for clay mineralogy: 2) second, to the complexity of the mix (four end-members for the geochemistry and two end-members for the clay minerals): and 3) third, by the storm's ability to transport sediment of different sizes. (C) 2010 Elsevier B.V. All rights reserved.
ISSN: 0037-0738

hal-00512614
https://hal.archives-ouvertes.fr/hal-00512614
DOI : 10.1016/j.sedgeo.2010.04.012

Éditeur(s) : HAL CCSD
Résumé : The Franceville Basin (2.1 Ga) in southeastern Gabon, hosts a black shale series well preserved (FB Formation) which represents an exceptional example of unmetamorphised Paleoproterozoic sediment strata. This basin includes the protore of one of the largest Mn-oxide laterite ore worldwide, mined by Eramet-Comilog. The aim of this this work is to determine formation conditions of this protore and to characterize the global sedimentary evolution of the FB Formation which include the protore. This 75 m thick protore is constituted of Mn carbonate-rich black shales which represent a potential ore deposit for the future. It was drilled, on the Bangombé plateau, during a recent campaign of 24 boreholes with an average depth of 125 m.Through multidisciplinary study on these cores and key outcrops of the basin, this work focuses on : i) the depositional environment of the Mn-protore and FB Formation ; ii) the processes of formation of the Mn-carbonates at 2.1 Ga and iii) the architecture and distribution of Mn-rich levels of the protore on the Bangombé Plateau.A detailed sedimentological and petrological study allowed us to redefine the division of the FB into nine units, named U1 to U9 from the base to the top. These units show a fine upward cycle up to U5 and a reverse coarse loop until U9. This division leads to a new interpretation to propose an evolution from a shoreface depositional environment controlled by deltaic currents (U1) to an offshore depositional environment with anoxic conditions (U2). In this basin, a system of submarine fan is developed, feeding a network of sand injections (injectites) covering the Bangombé plateau (70 km²) and with a thickness of 150 m affecting U4 to U7, including the Mn-protore. The protore depositional environment formed below the wave base limit (U4, U5 and U6) in a starved basin, controlled by biochemical sedimentation allowed the formation of Mn-carbonates. The end of starved basin, would allow the re-opening of the detrital input into the offshore basin (U7). This basin is then filled by storm bar deposits intersected by deltaic sub-aquatic channels (U8). The U9 unit corresponds to a quiet lagoon environment, allowing the multicellular organism development for the first time on the planet.A geochemical study allowed the characterization of the depositional environment of Mn-carbonates as an anoxic to sub-oxic and alkaline environment. For the first time, we showed that the manganese carbonates, present as bacteriomorph forms, are precipitated from the seawater by the mediated photosynthetic cyanobacterial activity, which allows CO2 / HCO3 depression of the environment and a local increase of pH. The cyanobacterial activity is controlled by the absence of bottom currents, which increase the detrital input. This would stop the activity of the cyanobacteria and thus would lead to the decrease of the Mn-concentration along the protore.Finally, well-log and a sequential correlation analyses allowed us to detail spatial and timing repartition of FB Formation deposit, controlled by a tectono-sedimentary model. We propose two- tectono-sedimentary phases. A first syn-tectonic phase (U1 to U3) controls the depocentres and sedimentation gaps. Turbidite coarse deposits are located in the most subsident part, clay deposits rather on the slope and carbonates on shoals. A second post-tectonic phase (U4 to U7) allows isopach deposits. The Mn-protore formed during the post-tectonic phase. However, it shows a variable thickness due to subsidence to the north of the Bangombé plateau. So, on the Bangombé plateau, Mn-contents increase towards the south, whereas the protore thickness increases towards the NNE. Moreover sand injectites decrease Mn-content in the eastern part of the Bangombé plateau and impact on the economic evaluation of the Mn-carbonates. Currently, the protore is structured by post-sedimentary faults, which lead to a non-continuity of the high Mn levels on the Bangombé plateau.
Le Bassin de Franceville situé au SE du Gabon présente une série de black shales (Formation FB) d'âge Paléoprotérozoïque (2,1 Ga) surmontant les grès de la Formation FA. Ce bassin peu déformé et non métamorphique représente une archive exceptionnelle des processus de dépôt de cette période de l’histoire de la Terre où la vie commence à se développer. En particulier, la Formation FB contient le protore d'un gisement mondial d'oxydes de manganèse exploité par la société Eramet-Comilog. L’objectif de ce travail est de préciser les conditions de formation de ce protore et de le replacer dans l’histoire du remplissage du bassin. Ce protore d'une épaisseur moyenne de 75 m est constitué de carbonates de manganèse ; il a fait l'objet d'une récente campagne de 24 forages carottés d'une profondeur moyenne de 125 m sur le plateau de Bangombé.A travers une approche pluridisciplinaire comprenant l'étude de ces forages et des affleurements clefs du bassin, ce travail porte sur la caractérisation i) de l'environnement de dépôt du protore et des séries qui l'encadrent (du toit du FA au toit du FB) ; ii) du mode de formation des carbonates de Mn à 2,1 Ga et iii) de l'architecture et de la répartition des hautes teneurs en Mn du protore qui représente un gisement potentiel du futur.L’étude pétro-sédimentaire détaillée a permis de distinguer neuf unités (U1 à U9) au sein de la Formation FB organisées suivant un cycle rétrogradant jusqu’à U5 puis progradant jusqu’à U9. Ce découpage montre une évolution du milieu de dépôt depuis un domaine de shoreface contrôlé par des courants deltaïques (U1) évoluant vers des dépôts d’offshore restreint (U2). Ce bassin enregistre ensuite un système de chenaux-levées turbiditiques (U3) qui alimentent un réseau d'injectites reconnu sur l’ensemble du Pl. de Bangombé et qui traverse 150 m de série (U4 à U7) en affectant le protore et ainsi les teneurs en Mn. L'environnement de dépôt du protore (U5 et U6) marque l’isolement du bassin qui devient affamé et contrôlé par une sédimentation biochimique à l’origine du dépôt des carbonates de Mn. L'Unité 7 correspond à la réouverture des apports détritiques en domaine d'offshore supérieur puis en domaine de shoreface dominé par des dépôts de tempêtes et de chenaux sous-aquatiques deltaïques (U8), et enfin lagunaire (U9) dans lequel apparaissent les premiers métazoaires de l’histoire de la planète, suivant une séquence régressive.Une étude géochimique a permis de préciser les conditions de dépôt du protore qui se forme en milieu alcalin anoxique à sub-oxique. Dans ce milieu, nous montrons pour la première fois une précipitation directe des carbonates de Mn sous forme bactériomorphe induite par l'activité photosynthétique des cyanobactéries qui consomment le CO2/HCO3 et conduisent à une augmentation du pH favorable à la formation des carbonates de Mn. L'activité cyanobactérienne est conditionnée par l’absence de courants de fond qui augmentent la turbidité du milieu et stoppent cette dernière.Les corrélations diagraphiques et séquentielles permettent de préciser la répartition spatiale et temporelle du FB permettant ainsi de replacer le protore dans l’histoire tectono-sédimentaire du bassin. Une première phase syn-tectonique (U1 à U3) contrôle l’épaisseur et la mise en place de dépôts turbiditiques dans les parties subsidentes, de dépôts argileux sur les pentes et de dépôt de carbonates sur les hauts-fonds. La seconde phase post tectonique (U4 à U7) permet la mise en place de dépôts relativement isopaques, bien que le protore enregistre une subsidence plus importante au nord du Pl. de Bangombé. On observe ainsi, sur le Plateau de Bangombé, des teneurs en Mn qui augmentent vers le sud alors que l’épaisseur du protore augmente vers le NNE. Postérieurement au dépôt du FB, le protore est structuré par des failles qui le compartimentent en touches de piano limitant ainsi sa continuité sur le Plateau de Bangombé.
https://hal.archives-ouvertes.fr/tel-01621460

tel-01621460
https://hal.archives-ouvertes.fr/tel-01621460
https://hal.archives-ouvertes.fr/tel-01621460/document
https://hal.archives-ouvertes.fr/tel-01621460/file/these_Dubois2017-MnGabon.pdf