Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Total mercury (HgT) and monomethylmercury (MMHg) were investigated in a tropical head watershed (1 km(2)) of French Guiana. The watershed includes a pristine area on the hill slopes and a former gold mined flat in the bottomland. Concentrations of dissolved and particulate HgT and MMHg were measured in rain, throughfall, soil water and at three points along the stream. Samples were taken in-between and during 14 storm events at the beginning and middle of the 2005 and 2006 rainy seasons. Dissolved and particulate HgT concentrations in the stream slightly increased downstream, while dissolved and particulate MMHg concentrations were low at the pristine sub-watershed outlet (median = 0.006 ng L-1 and 1.84 ng g(-1), respectively) and sharply increased at the gold mined flat outlet (median = 0.056 ng L-1 and 6.80 ng g(-1), respectively). Oxisols, which are dominant in the pristine area act as a sink of HgT and MMHg from rain and throughfall inputs. Hydromorphic soils in the flat are strongly contaminated with Hg (including Hg droplets) and their structure has been disturbed by former gold-mining processes, leading to multiple stagnant water areas where biogeochemical conditions are favorable for methylation. In the former gold mined flat high dissolved MMHg concentrations (up to 0.8 ng L-1) were measured in puddles or suboxic soil pore waters, whereas high dissolved HgT concentrations were found in lower Eh conditions. Iron-reducing bacteria were suggested as the main methylators since highest concentrations for dissolved MMHg were associated with high dissolved ferrous iron concentrations. The connection between saturated areas and stagnant waters with the hydrographic network during rain events leads to the export of dissolved MMHg and HgT in stream waters, especially at the beginning of the rainy season. As both legal and illegal gold-mining continues to expand in French Guiana, an increase in dissolved and particulate MMHg emissions in the hydrographic network is expected. This will enhance MMHg bio-amplification and present a threat to local populations, whose diet relies mainly on fish.
Water Research (0043-1354) (Pergamon-elsevier Science Ltd), 2011-04 , Vol. 45 , N. 8 , P. 2659-2669

Droits : 2011 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00035/14628/12134.pdf
DOI:10.1016/j.watres.2011.02.022
http://archimer.ifremer.fr/doc/00035/14628/

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : If the net flux to the island arc crust is primitive arc basalt, the evolved composition of most arc magmas entails the formation of complementary thick ultramafic keels at the root of the island arc crust. Dunite, wehrlite, and Cr-rich pyroxenite from the Jijal complex, constituting the Moho transition zone of the Kohistan paleo–island arc (northern Pakistan), are often mentioned as an example of high-pressure cumulates formed by intracrustal fractionation of mantle-derived melts, which were later extracted to form the overlying mafic crust. Here we show that calculated liquids for Jijal pyroxenites-wehrlites are strongly rare earth element (REE) depleted and display flat or convex-upward REE patterns. These patterns are typical of boninites and are therefore unlike those of the overlying mafic crust that have higher REE concentrations and are derived from light rare earth element (LREE)–enriched melts similar to island arc basalt. This observation, along with the lower 208Pb/204Pb and 206Pb/204Pb ratios of Jijal pyroxenites-wehrlites relative to gabbros, rejects the hypothesis that gabbros and ultramafic rocks derive from a common melt via crystal fractionation. In the 208Pb/204Pb versus 206Pb/204Pb diagram, ultramafic rocks and gabbros lie on the same positive correlation, suggesting that their sources share a common enriched mantle 2 (EM2) signature but with a major depleted component contribution for the ultramafic rocks. These data are consistent with a scenario whereby the Jijal ultramafic section represents a Moho transition zone formed via melt-rock reaction between subarc mantle and incoming melt isotopically akin to Jijal gabbroic rocks. The lack in the Kohistan arc of cogenetic ultramafic cumulates complementary to the evolved mafic plutonic rocks implies either (1) that a substantial volume of such ultramafic cumulates was delaminated or torn out by subcrustal mantle flow from the base of the arc crust in extraordinarily short time scales (0.10–0.35 cm/yr), or (2) that the net flux to the Kohistan arc crust was more evolved than primitive arc basalt.
ISSN: 0091-7613

hal-00406688
https://hal.archives-ouvertes.fr/hal-00406688
DOI : 10.1130/G23675A.1

Éditeur(s) : HAL CCSD
Résumé : International audience
This communication reports on a field experiments carried out on the Ouano reef barrier, New Caledonia. The analysis is based on a cross-shore network of pressure sensors deployed across the reef flat and within the lagoon. Confirming existing observations, the measurements show the strong filtering role of the reef barrier on the incoming wave energy The swell energy is dissipated and transferred toward lower frequencies, including the so-called infragravity (IG) and very low frequency (VLF) waves. During energetic event (Hs=4.2m), IG and VLF significant wave heights on the reef flat are observed to reach 1.2 and 0.7m, respectively. A variety of long waves modes are observed on the reef, combining standing and progressive-dissipative modes. In any cases, the VLF and IG waves are much more developed over and close to the reef flat than further inside the lagoon.
Coastal Dynamics 2017
Helsingor, Denmark

hal-01562927
https://hal.archives-ouvertes.fr/hal-01562927

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
New outcrops in the Sinis peninsula (Sardinia, Italy) allow a detailed description of the Messinian erosion surface. The correlation between outcrops, industrial seismic data and data collected offshore Oristano from a recent cruise permits reconstruction of the geometry of this surface from presently emerged interfluves to the deep canyons offshore, with: - onshore: an eroded karstic plateau presently cropping out over a 20 km × 5 km area. Well-preserved karst structures occur locally and can form several metres high reliefs. The southernmost edge of the plateau is limited by a cliff. The karstic plateau and the cliff are sealed by transgressive deposits of Pliocene age; - offshore, an interfluve zone with a mostly flat and low-angle dipping plateau, westward dissected by paleovalleys which were identified down to a depth of 2000 m. In the Oristano Gulf, Messinian paleovalleys were also identified. The Capo San Marco paleocliff was probably located on the edge of a canyon. Onshore, only one major erosion surface was identified, located at the top the Messinian sequence. Offshore, this surface extends down to the abyssal plain. The surface was emplaced above deposits related to the Terminal Carbonate Complex. This indicates that the marginal evaporites are older than the major drawdown of the Mediterranean sea-level. The major drawdown is related to the deposition of the deep evaporites.
ISSN: 0037-0738

hal-00407864
https://hal.archives-ouvertes.fr/hal-00407864
DOI : 10.1016/j.sedgeo.2008.06.005

Éditeur(s) : Public Library Science
Résumé : Estimating diversity and abundance of fish species is fundamental for understanding community structure and dynamics of coral reefs. When designing a sampling protocol, one crucial step is the choice of the most suitable sampling technique which is a compromise between the questions addressed, the available means and the precision required. The objective of this study is to compare the ability to sample reef fish communities at the same locations using two techniques based on the same stationary point count method: one using Underwater Visual Census (UVC) and the other rotating video (STAVIRO). UVC and STAVIRO observations were carried out on the exact same 26 points on the reef slope of an intermediate reef and the associated inner barrier reefs. STAVIRO systems were always deployed 30 min to 1 hour after UVC and set exactly at the same place. Our study shows that; (i) fish community observations by UVC and STAVIRO differed significantly; (ii) species richness and density of large species were not significantly different between techniques; (iii) species richness and density of small species were higher for UVC; (iv) density of fished species was higher for STAVIRO and (v) only UVC detected significant differences in fish assemblage structure across reef type at the spatial scale studied. We recommend that the two techniques should be used in a complementary way to survey a large area within a short period of time. UVC may census reef fish within complex habitats or in very shallow areas such as reef flat whereas STAVIRO would enable carrying out a large number of stations focused on large and diver-averse species, particularly in the areas not covered by UVC due to time and depth constraints. This methodology would considerably increase the spatial coverage and replication level of fish monitoring surveys.
Plos One (1932-6203) (Public Library Science), 2014-01 , Vol. 9 , N. 1 , P. -

Droits : 2014 Mallet et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00170/28132/26352.pdf
DOI:10.1371/journal.pone.0084344
http://archimer.ifremer.fr/doc/00170/28132/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this study, we report new U-Pb zircon ages and amphibole and biotite 40Ar-39Ar cooling ages for igneous and metaigneous rocks from the eastern portion of the Borborema Province (NE Brazil). We combine these results with preliminary thermobarometric estimates and existing data to place constraints on the timing and duration of the Brasiliano-Pan-African Orogeny in northeastern Brazil and on the subsequent late- to post-orogenic history. The Alcantil orthogneiss contains a complex zircon population, but the youngest concordant analyses yielded an age of 632 ± 17 Ma (2σ). These grains have low Th/U ratios (<0.1), and the age of 632 Ma is therefore interpreted as dating the metamorphic event responsible for the acquisition of the gneissic fabric. In the Caruaru biotite amphibole orthogneiss, concordant analyses provided an age of 618 ± 4 Ma (2σ), which we relate to emplacement of the protolith of the Caruaru orthogneiss. Together with available U-Pb data from the literature, the 632-600 Ma age range is regarded as dating development of a regional flat-lying foliation coeval with high-grade metamorphism (upper amphibolite facies conditions). The 586 ± 3 Ma age (2σ) of the Panelas pluton is similar to those of other granitic plutons associated with a voluminous plutonism of high-K calc-alkaline to shoshonitic nature that occurred at 590-580 Ma. This plutonism slightly predated or was synchronous with development of large strike-slip shear zones. Amphibole grains yielded 40Ar-39Ar ages ranging from 584 ± 4 Ma to about 530 Ma, suggesting that regional temperatures remained near the closing temperature of this mineral (≈500 °C) for a long time. Most 40Ar-39Ar biotite ages range from 552 to 533 Ma, but two samples yielded plateau ages of 519 ± 5 Ma and 509 ± 5 Ma. The inferred rather slow cooling of the studied region possibly reflects low rates of unroofing, allowing persistence of a protracted thermal anomaly caused by the massive injection of magmas at the end of the Neoproterozoic.
ISSN: 0895-9811

hal-00745698
https://hal.archives-ouvertes.fr/hal-00745698
DOI : 10.1016/j.jsames.2012.06.003

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : The late Quaternary has experienced large glacial/interglacial climatic variations and related 10's to 100 meters high-amplitude sea level fluctuations at Milankovich frequencies from 10's to 100 kyr during which carbonate platform tops have been exposed and re-flooded in many occasions. This study focuses on the accumulation of calci-turbidites, the aragonite onset/sharp increase in fine sediments and their timing in deep basins adjacent to carbonate platforms. A particular emphasis is developed on the occurrence of the first gravity flow event and aragonite onset/sharp increase and their linkage to the initial re-flooding of the platform tops during deglaciations. Three basins adjacent to isolated platforms in the Bahamas, the Northern Nicaragua Rise, and the Gulf of Papua, were selected to represent pure carbonate versus mixed systems, in quiescent versus tectonically active settings, and various carbonate bank top morphologies, ranging from atoll to relatively deeply and narrowly flooded flat top banks. In spite of these differences, each record illustrates a clear relationship between the timing of platform top re-flooding and initiation of significant carbonate export by gravity flows and low-density plumes into the surrounding basins. The concept of "re-flooding window" is introduced to characterize the prolific period of time during which bank and atoll-tops are flooded enough to produce large export of bank-derived aragonite and of calci-turbidites in adjacent basins. According to our datasets, the main re-flooding windows have occurred mainly on the last part of the sea level rise at each glacial termination (T), those periods being marked by some of the highest rates of sea level rise. The analysis of a long-piston core from the earthquakes-prone Walton Basin (Northern Nicaragua Rise) demonstrates that sea level, not seismic activities, played a major role as trigger mechanism for the initiation of gravity flows since the last four glacial/interglacial transitions, and supports the existence of an extra glacial termination during the early portion of the transition from MIS 7.4 to MIS 7.3 (TIIIA). (C) 2010 Elsevier Ltd. All rights reserved.
Quaternary Science Reviews (0277-3791) (Pergamon-elsevier Science Ltd), 2010-08 , Vol. 29 , N. 17-18 , P. 2010-2026

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00012/12298/9095.pdf
DOI:10.1016/j.quascirev.2010.04.016
http://archimer.ifremer.fr/doc/00012/12298/

Éditeur(s) : Styli 2003. Trente ans de crevetticulture en Nouvelle-Calédonie. Nouméa - Koné, 2-6 juin 2003. 2004. Gorarant C, Harache Y, Herbland A, Mugnier C. Ed. Ifremer, Actes de Colloque, n°38, pp.113-120
Résumé : Two oyster species are currently present along the French coasts : the indigenous European flat oyster (Ostrea edulis), and the Pacific cupped oyster (Crassostrea gigas), that has been introduced from Japan since the beginning of the 70ies. The flat oyster successively suffered from two protozoan diseases during the 60ies and its production decreased from 20 000 tons/year by that time to 1 500 tons/year nowadays. Consequently, the oyster production is principally (99%) based upon the Pacific oyster species with approximately 150 000 tons/year among which 90% are grown from the natural spat. However, the hatchery production of this species is developing and was estimated to 400 to 800 millions spat in 2002. Moreover, strengthened relationships between IFREMER and the 5 commercial hatcheries, that all joined the SYSAAF (Union of the French poultry, shellfish and fish farming selectors), allow to plan for new genetic breeding programs. At the end of the 80ies, IFREMER initiated a genetic breeding program for the resistance of the European flat oyster to the bonamiosis, and obtained strains more tolerant to this disease. After two generations of massal selection, molecular markers had identified a reduced genetic basis in this program. It was then reoriented to an intra-familial selection. However, we were confronted to a zootechnic problem to manage such a scheme and we compromised by an intra-cohorts of families selection scheme managed using molecular markers. The program has now reached the transfer level with experimentation at a professional scale. Concerning the Pacific cupped oyster, and in parallel with the obtaining and the study of polyploids, performance of different Asian cupped oyster strains were compared to the one introduced in France thirty years ago and currently suffering from summer mortalities. The local strain exhibited better performance, certainly based upon a good local adaptation. In other respects, although early growth is a relevant criteria for selection for growth to commercial stage, it is not to be privileged in the context of an oyster producing region with a limited food availability. Contrary, the spat summer mortality became a priority for numerous teams (genetic, physiology, pathology, ecology,...) joined in the MOREST program. The first results showed important survival differences between fullsib and halsib families. They indicate a genetic determinism to this character "survival" and promote for its selection.
Deux espèces d'huîtres sont aujourd'hui présentes sur les côtes françaises : l'huître plate européenne (Ostrea edulis), indigène, et l'huître creuse du Pacifique (Crassostrea gigas), introduite du Japon dans le début des années 1970. L'huître plate a subi coup sur coup, dans les années 1960, deux maladies dues à des protozoaires parasites et sa production est ainsi passée de 20 000 t/an dans les années 1960 à 1500 t/an aujourd'hui en France. Il en résulte que la filière ostréicole française repose quasiment exclusivement (99%) sur la production de l'huître creuse, C. gigas, avec 150 000 tonnes en 2000 dont environ 90% est issu du captage naturel. Cependant, la reproduction de cette espèce en écloserie est actuellement en expansion avec une estimation de 400 à 800 millions de naissains commercialisés en 2002. Des rapports renforcés entre l'IFREMER et les cinq écloseries françaises de la filière ostréicole, qui adhèrent toutes au SYSAAF (SYndicat des Sélectionneurs Avicoles et Aquacoles Français), permettent désormais d'envisager le développement de nouveaux programmes d'amélioration génétique. A la fin des années 1980, un programme de sélection pour la résistance de l'huître plate à la bonamiose a été initié au sein de l'IFREMER, et a permis d'obtenir des souches plus tolérantes à cette maladie. Après deux générations en sélection massale, les marqueurs moléculaires avaient mis en évidence une base génétique réduite au sein de ce programme qui s'était alors orienté vers une sélection intra-familiale. Devant la lourdeur zootechnique d'un tel schéma, un compromis a été trouvé en réalisant une sélection au sein de cohortes de familles biparentales, la gestion de ces cohortes étant permise par les analyses moléculaires. Le programme est maintenant dans sa phase de transfert, avec des expérimentations à plus grande échelle en partenariat avec la profession. En ce qui concerne l'huître creuse, et en parallèle de l'obtention et l'étude de polyploïdes, les performances de différentes souches d'huîtres creuses provenant d'Asie ont été comparées à celles de la souche introduite en France il y a trente ans, sujette à des mortalités estivales. La souche locale présente de meilleures performances, vraisemblablement grâce à une adaptation bien réalisée. Par ailleurs, bien que l'amélioration de la croissance jusqu'à la taille commerciale s'avère possible par une sélection précoce au stade larvaire, le critère de croissance n'est pas nécessairement à privilégier dans le contexte d'un bassin ostréicole disposant de ressources trophiques limitées. En revanche, les importantes mortalités rencontrées par le naissain en périodes estivales constituent le sujet d'étude prioritaire sur lequel se sont penchées de nombreuses équipes (génétique, physiologie, pathologie, écologie, ...) dans le cadre du grand défi MOREST. Les premiers résultats ont mis en évidence de fortes différences de survie entre des familles biparentales d'animaux indiquant un déterminisme génétique du caractère « survie », et encourageant dans la voie d'une sélection pour ce caractère.

Droits : 2004 Ifremer
http://archimer.ifremer.fr/doc/2003/acte-3491.pdf
http://archimer.ifremer.fr/doc/00000/3491/

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
The lateral variation of the mechanical properties of continental lithosphere is an important factor controlling the localization of deformation and thus the deformation history and geometry of intraplate mountain belts. A series of three-layer lithospheric-scale analog models, with a strong domain (SD) embedded at various depths, are presented to investigate the development of topography and deformation patterns by having lateral heterogeneities within a weak continental lithosphere. The experiments, performed at a constant velocity and under normal gravity, indicate that the presence or absence of the SD controls whether deformation is localized or distributed at a lithospheric scale. Deformation and topography localize above the edges of the SD, while the SD region itself is characterized by minor amounts of surficial deformation and topography. The depth of the SD (within the ductile crust, ductile mantle lithosphere, or both) controls the pattern of deformation and thus the topography. The presence of a SD in the ductile crust or in the mantle results in limited surficial topographic effects but large variations in the Moho topography. Strong Moho deflection occurs when the SD is in the ductile crust, while the Moho remains almost flat when the SD is in the mantle. When the SD occupies the ductile lithosphere, the SD is tilted. These analog experiments provide insights into intraplate strain localization and could in particular explain the topography around the Tarim Basin, a lithospheric-scale heterogeneity north of the India-Asia collision zone.
ISSN: 0278-7407

hal-01172472
https://hal.archives-ouvertes.fr/hal-01172472
DOI : 10.1002/2014TC003756

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Regeneration of artificially induced lesions was monitored in nubbins of the branching coral Acropora muricata at two reef-flat sites representing contrasting environments at Réunion Island (21u079S, 55u329E). Growth of these injured nubbins was examined in parallel, and compared to controls. Biochemical compositions of the holobiont and the zooxanthellae density were determined at the onset of the experiment, and the photosynthetic efficiency (F v /F m) of zooxanthellae was monitored during the experiment. Acropora muricata rapidly regenerated small lesions, but regeneration rates significantly differed between sites. At the sheltered site characterized by high temperatures, temperature variations, and irradiance levels, regeneration took 192 days on average. At the exposed site, characterized by steadier temperatures and lower irradiation, nubbins demonstrated fast lesion repair (81 days), slower growth, lower zooxanthellae density, chlorophyll a concentration and lipid content than at the former site. A trade-off between growth and regeneration rates was evident here. High growth rates seem to impair regeneration capacity. We show that environmental conditions conducive to high zooxanthellae densities in corals are related to fast skeletal growth but also to reduced lesion regeneration rates. We hypothesize that a lowered regenerative capacity may be related to limited availability of energetic and cellular resources, consequences of coral holobionts operating at high levels of photosynthesis and associated growth.
ISSN: 1932-6203

hal-01369712
http://hal.univ-reunion.fr/hal-01369712
http://hal.univ-reunion.fr/hal-01369712/document
http://hal.univ-reunion.fr/hal-01369712/file/journal.pone.0072618.PDF
DOI : 10.1371/journal.pone.0072618

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Kekem shoshonitic gabbro-norite association is part of the high-K calc-alkaline (HKCA) post-collisional magmatism, a major feature of the Pan-African Belt in Cameroon. LA-ICP-MS U-Pb zircon analyses provide an age of 576 ± 4 Ma for the Kekem complex. This age is interpreted as dating the emplacement of the massif during the waning stage of the Pan-African orogeny. The latter is related to dextral movements along the Central Cameroon Shear Zone (CCSZ). The REE patterns display enriched LREE (LaN/YbN = 14.2-23.5) while HREE present a nearly flat profile (DyN/YbN = 1.3-1.7), and the La/Sm and Sm/Yb ratios led to propose that the Kekem gabbro-norites have been derived from the partial melting of a garnet-spinel lherzolite mantle source. The negative Nb-Ta and Ti anomalies and the positive Pb anomalies indicate that this mantle source was modified by contribution of a subduction-related material. The low Ce/Pb (2.6-10.4) and Th/Yb ratios associated to high Ba/La ratios, indicate that source enrichment could be related to slab derived fluids. As a whole, the Kekem geochemical features suggest that primary gabbro-noritic magmas derived from a subduction-modified mantle source (metasomatised lithospheric mantle). Moderately high 86Sr/87Sr initial ratios (0.7068-0.7082), low εNd (−5 to −9) and old Nd TDM model ages (1.6-1.8 Ga) are interpreted to result from contamination of Neoproterozoic mantle by the Paleoproterozoic crust. The ca. 576 Ma movements along the CCSZ are related to a Neoproterozoic metacratonization of the northern margin of the Congo craton during the Pan-African orogeny. This metacratonization led to vertical planar lithospheric delamination along lithospheric transcurrent faults, asthenospheric uprise and partial melting of the Paleoproterozoic lithospheric mantle.
ISSN: 0899-5362

hal-00903665
https://hal.archives-ouvertes.fr/hal-00903665
DOI : 10.1016/j.jafrearsci.2013.03.010

Résumé : Herbácea o sufruticosa perenne de hasta 1 m de alto, de olor fétido. Hojas alternas, oblongas a elípticas, agudas a acuminadas en el ápice, generalmente glabras. Espigas de hasta 40 cm, pubérulas; flores perfectas, subsésiles, apétalas. Aquenio de alrededor de 8 mm de largo, cuneado, estriado, con seis cerdas terminales reflexas; semilla solitaria, linear.
Plante herbacée ou suffrutescente pérenne pouvant atteindre 1 m de haut, d&rsquo;odeur fétide. Feuilles alternes, oblongues à elliptiques, aiguës à acuminées à la pointe, généralement glabres. Epis pouvant atteindre 40 cm, pubérulents; fleurs parfaites, subsessiles, sans pétales. Akène d&rsquo;environ 8 mm de long, cunéiforme, strié, avec 6 soies terminales courbées vers l';arrière; graine solitaire, linéaire.
A weedy, deeply rooted, subherbaceous perennial 60-150 cm. high with the strong smell of garlic when broken. Leaves spirally arranged, simple, entire, oblong to elliptic, acute to acuminate at the tip, 20 x 7 cm. usually glabrous; Inflorescence a spikes up to 40 cm. long with minute hairs; 4 white perianth, becoming green in fruit; fruit an achene 6-8 mm long, flattened against the rachis of the inflorescence, developing two sharpely pointed, deflex bristles at the tip.
Originaria de América tropical, cultivada y naturalizada en regiones tropicales.
Originaire d’;Amérique tropicale, cultivée et naturalisée dans les régions tropicales.
Native to tropical America, cultivated and naturalized in tropical regions.

http://www.tramil.net/fototeca/plant273

Éditeur(s) : HAL CCSD
Résumé : Report
From 2003 to 2006, the Earth Sciences Sector of Natural Resources Canada conducted a study of the sensitivity of the Roberts Bank tidal flats and marsh to rising sea level, under the Climate Change Impacts and Adaptation Program (Project A600). The study was a multi-disciplinary effort involving geologists, biologists and social scientists comprising a scientific study of the tidal flat environment and a stakeholder engagement process. The results of the work were presented at a Final Stakeholder Workshop on 24 March 2006 and compiled into a preliminary report distributed to the major stakeholders.
https://hal.archives-ouvertes.fr/hal-00856757

hal-00856757
https://hal.archives-ouvertes.fr/hal-00856757
DOI : 10.4095/292672

Éditeur(s) : Springer
Résumé : The great fecundity and very high larval mortality of most marine invertebrates and fish make possible substantial variance in the number of offspring contributed by adults to subsequent generations. The reproductive success of such organisms may thus resemble a sweepstakes lottery, in which a minority of progenitors succeeds in replacing an entire population, while the majority fails to procreate. One specific prediction of this hypothesis, that genetic diversity of newly settled cohorts should be less than that of the adult population, is tested in the present study. Microsatellite DNA markers were examined in naturally spawned juvenile European flat oysters Ostrea edulis (L.), collected over a 12-day period in 1993 from the western Mediterranean Sea, near Sete, France (43 degrees 32'N, 3 degrees 56'E) and grown out for a period of up to 10 months. Variation in these juveniles was compared to that in a pooled sample of adults collected in 1994 from two locations (Thau Lagoon and Port St. Louis) that had statistically homogeneous allelic frequencies. Though nearly twice as large as the pooled adult sample, the juvenile sample had only 60% of the adult allelic diversity. Analyses of linkage disequilibrium and kinship, as well as estimation of the effective number of parents, suggested that 10-20 adults produced this juvenile cohort. This observation supports the hypothesis of sweepstakes reproductive success and suggests that partial inbreeding may occur even in species with large populations and dispersing planktonic larvae.
Marine Biology (0025-3162) (Springer), 2007-03 , Vol. 150 , N. 6 , P. 1173-1182

Droits : 2007 Springer
http://archimer.ifremer.fr/doc/2007/publication-2616.pdf
DOI:10.1007/s00227-006-0441-y
http://archimer.ifremer.fr/doc/00000/2616/

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
We decipher late-orogenic crustal flow characterized by feedback relations between partialmelting and deformation in the Variscan Montagne Noire gneiss dome. The dome shape and finite strainpattern of the Montagne Noire Axial Zone (MNAZ) result from the superimposition of three deformations(D1, D2 and D3). The early flat-lying S1 foliation is folded by D2 upright ENE-WSW folds and transposed in thecentral and southern part of the MNAZ into steep D2 high-strain zones consistent with D2 NW-SE horizontalshortening, in bulk contractional coaxial deformation regime that progressively evolved to noncoaxial dextraltranspression. The D2 event occurred under metamorphic conditions that culminated at 0.65 ± 0.05 GPa and 720± 20°C. Along the anatectic front S1 and S2 foliations are transposed into a flat-lying S3 foliation with top-to-NEand top-to-SW shearing in the NE and SW dome terminations, respectively. These structures define a D3 transitionzone related to vertical shortening during coaxial thinning with a preferential NE-SW to E-W directedstretching. Depending on structural level, the metamorphic conditions associated with D3 deformation rangefrom partial melting conditions in the dome core to subsolidus conditions above the D3 transition zone. Wesuggest that D2 and D3 deformation events were active at the same time and resulted from strain partitioningon both sides of the anatectic front that may correspond to a major rheological boundary within the crust.
ISSN: 0278-7407

hal-01208098
https://hal.archives-ouvertes.fr/hal-01208098

Éditeur(s) : Elsevier
Résumé : The Danube Canyon is a large shelf-indenting canyon that has developed seaward of the late Pleistocene paleo-Danube valley. Mechanisms of canyon evolution and factors that controlled it are revealed by analyzing the morphology and the sedimentary structure of the canyon, as well as the main features of the continental margin around the canyon. This is based on investigation by swath bathymetry in the canyon area combined with different types of seismic data. The canyon is a major erosional trough with a flat bottom cut by an entrenched axial thalweg. The thalweg path varies from highly meandering to fairly straight in relation to the local gradient. Segments of the canyon are characterized by specific morphology, orientation and gradient along the axial thalweg. We interpret these segments in terms of canyon maturity. The sedimentary structure of the canyon documents an older phase of erosion followed by partial infilling, and thus attests for repeated cycles of canyon development. Canyon morphology is interpreted as a result of erosive sediment flows along the entrenched axial thalweg that caused downcutting into the canyon bottom and instability of the canyon walls, and hence enlargement of the canyon and expansion by headward erosion. During the last lowstand level of the Black Sea the canyon was located in an area of high sediment supply close to the paleo-Danube River mouths. This is indicated by buried fluvial channels on the shelf and by a wave-cut terrace associated with a water level situated about - 90 m below the present level. We infer that erosive flows in the canyon resulted from hyperpycnal currents at the river mouths, probably favored by the low salinity environment that characterized the Black Sea during lowstand times. Other mechanisms could have contributed to trigger sediment failure along the canyon, such as instability related to the presence of shallow gas, or the effect of a deep fault.
Marine Geology (0025-3227) (Elsevier), 2004-05 , Vol. 206 , N. 1-4 , P. 249-265

Droits : 2004 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2004/publication-476.pdf
DOI:10.1016/j.margeo.2004.03.003
http://archimer.ifremer.fr/doc/00000/476/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Mediterranean geodynamic system is an exceptional natural laboratory to study the complexities of back-arc extension during subduction rollback. Corsica is a key locality that recorded the Alpine subduction-collision history followed by 30 Ma of the Apennines slab rollback, responsible for the successive opening, from West to East, of the Liguro-Provençal basin and the Tyrrhenian Sea. The overall strain pattern of the Alpine metamorphic units of Alpine Corsica is studied through a synthesis of i) available geological maps, ii) geochronological data and iii) newly acquired structural data relative to successive events of ductile and brittle extension, Three main stages of extension are recorded: 1/ Syn-metamorphic Oligocene extension accommodated by N140° trending ductile shear zones, that correspond to the reactivation of a major Alpine thrust; 2/ Burdigalian ramp-flat extension with N60°-70° trending fault zones that controlled the deposition of onshore piggy-back basins (e.g. St Florent basin), and 3/ Serravalian N-S trending fault zones. From a geodynamical point of view, these successive extensional deformations in Alpine Corsica can be correlated to the history of the Apennines slab rollback. The two first stages are related to a southeastward rollback of the Appennines slab that successively triggered: 1/ Continental rifting in Oligocene leading to the opening of the Liguro-Provençal basin and 2/ Burdigalian extension with N60°-70° trending fault zone, oblique to the Alpine thrust that, after a counterclockwise rotation of the Corso-Sardinian block, became unable to accommodate extension. Finally, the third stage that gave NS-trending fault zones developed in Serravalian, at the onset of Tyrrhenian rifting, related to an eastward rollback of the Apennines slab, as a response of slab tearing in Sicily.
ISSN: 0040-1951

insu-01424859
https://hal-insu.archives-ouvertes.fr/insu-01424859
https://hal-insu.archives-ouvertes.fr/insu-01424859/document
https://hal-insu.archives-ouvertes.fr/insu-01424859/file/gueydan-tectonoph-2017.pdf
DOI : 10.1016/j.tecto.2016.12.028

Éditeur(s) : Institut national agronomique Paris Grignon
Résumé : The flat oyster Ostrea edulis L. is the indigenous oyster of the Atlantic as well as the Mediterranean coasts of Europe. Its commercial exploitation dates back to Antiquity but its breeding is now threatened by two parasitic protozoa, among which Bonamia ostreae. Various aspects of the genetics of this species' natural and farmed populations have been studied with the aid of microsatellite markers. At first, the implementation and the screening of two partial genomic libraries made it possible to identify 28 new microsatellite loci. Analysis of the segregation of 12 of these loci and of two enzymatic loci shows that most microsatellite loci are transmitted in a Mendelian way, but some loci have significant segregation distortions. Moreover, seven linkage groups, of which four contain at least two markers, were identified in Ostrea edulis. The genetic variability of three populations selected for one or two generations for resistance to Bonamia ostreae was analysed with the aid of 5 microsatellite loci. In spite of the absence of genealogical data, we have shown that these selected populations were descended from a very low number of founding genitors (from 3 to 15 depending on the population) and for two populations, we were able to reconstruct the genealogy and the relationships between the individuals were identified. These selected populations have, in addition to a very low genetic variability, real and at times high levels of consanguinity. These results have a significant implication for the continuation of the selection programme (consanguinity management, augmentation of genetic variability by introducing wild genitors). The geographical structuring of the genetic variability of natural populations of Ostrea edulis has been analysed with the aid of 5 microsatellite loci on a sampling covering almost the entire distribution area of the species (from Norway to the Adriatic Sea). The results are consistent with those published in the literature and using enzymatic markers. The populations show a low level of differentiation that could correspond to a model of isolation by distance. The Atlantic populations, which have a reduced polymorphism, could be descended from post-glacial recolonisation from Mediterranean populations that had survived the glaciations of the Quaternary Period. The current distribution of flat oyster populations is surely also subject to anthropogenic activities. Finally, the genetic bases of the heterozygosis-growth correlation were studied in a natural population with the aid of enzymatic and microsatellite markers. Although leads favouring the direct contribution of enzymatic loci have been found, biases in the sampling design make it impossible to come to a formal conclusion. However, this study has made it possible to show that the capture of individuals over a short period (around ten days) leads to a sampling of a population descended from a very low number of founding genitors, in contradiction with the generally accepted idea that marine bivalve populations are large panmictic populations with significant, efficient numbers. These results confirm in a natural population the observations of a significant reduction of efficient sizes in hatchery populations.
L'huître plate Ostrea edulis L. est l'huître indigène des côtes européennes aussi bien atlantiques que méditerranéennes. Son exploitation commerciale remonte à l'Antiquité mais son élevage est aujourd'hui menacé par deux protozoaires parasites dont Bonamia ostreae. Différents aspects de la génétique des populations naturelles et cultivées de cette espèce ont été étudiés à l'aide de marqueurs microsatellites. Dans un premier temps, la réalisation et le criblage de deux banques génomiques partielles ont permis l'identification de 28 nouveaux locus microsatellites. L'analyse de la ségrégation de 12 de ces locus et de deux locus enzymatiques montre que la plupart des locus microsatellites sont transmis de façon mendélienne, mais certains locus présentent des distorsions de ségrégation importantes. Par ailleurs, sept groupes de liaison dont quatre contiennent au moins deux marqueurs ont été identifiés chez Ostrea edulis. La variabilité génétique de trois populations sélectionnées depuis une ou deux générations pour une résistance à Bonamia ostreae a été analysée à l'aide de 5 locus microsatellites. Malgré l'absence de données généalogiques, nous avons montré que ces populations sélectionnées étaient issues d'un très faible nombre de géniteurs fondateurs (de 3 à 15 selon les populations) et pour deux populations, la généalogie a pu être reconstituée et les liens de parenté entre les individus ont été identifiés. Ces populations sélectionnées présentent, outre une très faible variabilité génétique, des niveaux de consanguinité réels et parfois élevés. Ces résultats ont une implication importante pour la continuation du programme de sélection (gestion de la consanguinité, augmentation de la variabilité génétique par introduction de géniteurs sauvages). La structuration géographique de la variabilité génétique des populations naturelles d'Ostrea edulis a été analysée à l'aide de 5 locus microsatellites sur un échantillonnage couvrant presque toute l'aire de répartition de l'espèce (de la Norvège à la Mer Adriatique). Les résultats sont cohérents avec ceux publiés dans la littérature et utilisant des marqueurs enzymatiques. Les populations montrent un niveau de différenciation faible qui pourrait correspondre à un modèle d'isolement par la distance. Les populations atlantiques, qui présentent un polymorphisme réduit, pourraient être issues de recolonisation post-glaciaire à partir de populations méditerranéennes ayant survécu aux glaciations du Quaternaire. La répartition actuelle des populations d'huître plate est certainement aussi soumise aux actions anthropiques. Enfin, les bases génétiques de la corrélation hétérozygotie-croissance ont été étudiées dans une population naturelle à l'aide de marqueurs enzymatiques et microsatellites. Bien que des pistes en faveur de la contribution directe des locus enzymatiques aient été trouvées, des biais dans le dispositif expérimental ne permettent pas de conclure de façon formelle. Cependant, cette étude a permis de montrer que le captage d'individus sur une faible période (une dizaine de jours) conduit à l'échantillonnage d'une population issue d'un nombre très réduit de géniteurs fondateurs, en contradiction avec l'idée reçue que les populations de bivalves marins sont de larges populations panmictiques à effectif efficace important. Ces résultats confirment dans une population naturelle les observations de réduction importante des tailles efficaces dans des populations d'écloserie.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1998/these-1919.pdf
http://archimer.ifremer.fr/doc/00000/1919/

Éditeur(s) : EDP Sciences
Résumé : Monitoring the abundance of green turtles (Chelonia mydas) is necessary to assess population trends and risks of collapse. This note presents a study aimed at comparing three techniques for the direct estimation of green turtle numbers in their foraging habitats (seagrass beds and reef flats). The experiment was carried out at Mayotte Island, Western Indian Ocean. The techniques involved were surveys by snorkel, and aerial surveys using a microlight aircraft and a paramotor. Each technique had shortcomings and advantages. While each technique provided estimations of turtle numbers only surveys by snorkel permitted identification of species and sex, whenever visibility and turtle behaviour permitted. Along the shorelines, and over foraging areas, the paramotor was found to be most suitable for direct estimations of turtle numbers. The major advantage of this technique lied in its capability to obtain a synoptic snapshot of turtle distribution over foraging areas. Linear surveys from a microlight aircraft are better suited to monitor foraging areas located further away from the shore.
Le suivi de l'abondance de tortues vertes (Chelonia mydas) est nécessaire pour évaluer l'évolution et éventuellement, le risque d'extinction des populations. L'objectif de cette expérience est de comparer trois techniques d'observation permettant l'évaluation directe de l'abondance totale de tortues vertes sur les aires d'alimentation (herbiers et platiers récifaux). L'étude a été conduite à l'île de Mayotte (ouest de l'océan Indien). Les techniques testées sont le comptage sous-marin et les comptages aériens à partir d'un ultra léger motorisé (ULM) et d'un paramoteur. Les limites de chaque technique utilisée ont été mises en évidence. L'abondance totale des tortues a été estimée par les trois techniques. Seuls, les comptages sous-marins ont permis de préciser des caractéristiques biologiques tels que l'espèce et le sexe, lorsque les conditions de visibilité et le comportement des tortues le permettaient. Le paramoteur paraît le plus adapté pour une estimation directe de l'abondance sur les aires d'alimentation situées à proximité immédiate de la côte. Cette technique permet de disposer d'un état de la répartition des tortues sur les aires d'alimentation à un moment donné. Pour les zones d'alimentation plus éloignées de la côte, l'usage de l'ULM est nécessaire pour réaliser les comptages à partir de transects linéaires.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005-04 , Vol. 18 , N. 2 , P. 193-198

Droits : EDP Sciences, IFREMER, IRD 2005
http://archimer.ifremer.fr/doc/2005/publication-432.pdf
DOI:10.1051/alr:2005021
http://archimer.ifremer.fr/doc/00000/432/

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
Pressure-temperature divariant melting phase relations of model carbonated peridotite in the system CaO-MgO-Al2O3-SiO2-CO2 from 8 to 12 GPa are reported. From 8 to 12 GPa, melting temperatures on the studied pressure-temperature divariant surface rise quite rapidly. Liquids, in equilibrium with forsterite, orthopyroxene, clinopyroxene, and garnet, on the low-temperature side of the divariant surface are magnesiocarbonatitic in composition. With increasing temperature along an isobar on the pressure-temperature divariant surface, and with the same crystalline phase assemblage, liquids gradually become kimberlitic in their composition. Given the model system data reported here, Group IB kimberlites and perhaps some kimberlites from Greenland, Canada, and South Africa could be generated from direct melting of carbonated peridotite in the pressure range of approximately 6-8 GPa. Some kimberlites from Canada and Russia could have formed by partial melting of carbonated mantle peridotite at pressures of about 10-12 GPa. From 8 to 12 GPa, liquid compositions on the studied divariant surface show a limited compositional range, which implies that the divariant surface is essentially flat. The implied flatness of the divariant surface, and so long as the liquid is in equilibrium with the crystalline assemblage of forsterite + orthopyroxene + clinopyroxene + garnet on the divariant surface, indicate that kimberlites belonging to Group IA and those more magnesian than Group IA cannot have their origin in only being a melting product of carbonated mantle peridotite. The absence of topography of the studied pressure-temperature divariant surface in all likelihood limits the generation of kimberlites in the Earth's upper mantle only.
ISSN: 0003-004X

hal-01053915
https://hal.archives-ouvertes.fr/hal-01053915
DOI : 10.2138/am.2014.4826