Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Hydrothermal circulation at ultramafic-hosted sites supports a large variety of high-and low-temperature hydrothermal vents and associated ecosystems. The discovery of abundant fossil vesicomyid and thyasirid shell accumulations at the ridge crest, approximately 2.5 km east of the active Rainbow vent field on the Mid-Atlantic Ridge (MAR, 36 degrees 13'N), increased our knowledge regarding the diversity of vent communities at slow spreading ridges. Bivalve molluscs of the family Vesicomyidae were represented by the genus Phreagena. Here we present the first record of this genus in the Atlantic Ocean. This second vesicomyid species known from the MAR, Phreagena sp., was found to be associated with a Thyasira species that is affiliated with T. southwardae (at the Logatchev vent field on the MAR) and with T. vulcolutre (in the Gulf of Cadiz). These two clams have close relationships with seep taxa along the continental margin, and were likely associated with sedimented vent fields. delta O-18 and delta C-13 analyses of the shells suggested that the burrowing bivalve Thyasira could incorporate isotopically light carbon, derived from the oxidation of methane in the sediment, while the signature of Phreagena sp. shells denoted a different carbonate source. C-14 dating of the shells denoted that the hydrothermal activity in the Rainbow area began at least similar to 25.5 kyr BP, which is similar to the model of the hydrothermal vent field distribution that was proposed for the Logatchev hydrothermal site. The results provide new insight regarding the diversity of chemosynthetic fauna on the MAR over geologic time. Ultramafic-hosted, on-axis sedimented vent fields extend the range of habitats for chemosynthetic communities, underlying the need to further explore the geology of these types of environments on slow-spreading ridges and to determine their role in the ecology of deep-sea vent communities.
ISSN: 1525-2027

hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467
https://hal.archives-ouvertes.fr/hal-00523467/document
https://hal.archives-ouvertes.fr/hal-00523467/file/G3-Lartaud-_-al.pdf
DOI : 10.1029/2010GC003079

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé :  
Cross-species analyses of plant functional traits have shed light on factors contributing to differences in performance and distribution, but to date most studies have focused on either leaves or stems. We extend these tissue-specific analyses of functional strategy towards a whole-plant approach by integrating data on functional traits for 13 448 leaves and wood tissues from 4672 trees representing 668 species of Neotropical trees. Strong correlations amongst traits previously defined as the leaf economics spectrum reflect a tradeoff between investments in productive leaves with rapid turnover vs. costly physical leaf structure with a long revenue stream. A second axis of variation, the 'stem economics spectrum', defines a similar tradeoff at the stem level: dense wood vs. high wood water content and thick bark. Most importantly, these two axes are orthogonal, suggesting that tradeoffs operate independently at the leaf and at the stem levels. By simplifying the multivariate ecological strategies of tropical trees into positions along these two spectra, our results provide a basis to improve global vegetation models predicting responses of tropical forests to global change.
Ecology Letters

hal-01032142
https://hal.archives-ouvertes.fr/hal-01032142
DOI : 10.1111/j.1461-0248.2010.01517.x

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
In South America, the presence of the Leishmania RNA virus type 1 (LRV1) was described in Leishmania guyanensis and Leishmania braziliensis strains. The aim of this study was to determine the prevalence distribution of LRV1 in Leishmania isolates in French Guiana given that, in this French overseas department, most Leishmania infections are due to these parasite species. The presence of the virus was observed in 74% of Leishmania spp. isolates, with a highest presence in the internal areas of the country.
ISSN: 0002-9637

pasteur-01583614
https://hal-riip.archives-ouvertes.fr/pasteur-01583614
https://hal-riip.archives-ouvertes.fr/pasteur-01583614/document
https://hal-riip.archives-ouvertes.fr/pasteur-01583614/file/2016%20Ginouves%20et%20al.%20ajtmh.pdf
PUBMED : 26598572

Éditeur(s) : HAL CCSD
Résumé : Diffusion du document : INRA Documentation de Centre, Domaine de Duclos, 97170 Petitt-Bourg (Guadeloupe, France) Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Because soil respiration representes 80% of ecosystem respiration, it is a major flux between biosphere and atmosphere. We examined the effects of root and litter exclusion on soil CO! efflux (Rsu1) using trenching and litter exclusion in a tropical plantation constituted of trees seedlings installed in 16 mono-specific stands 20 years ago near Kourou, French Guyana. Soil CO2 efflux was measured using an infra red gas analyser (PP System,EGM4 ) at 16 randomly distributed plot in each treatment: control, root exclusion, litter exclusion and both root and litter exclusion. in the plantation. We measured R'1l1during four periods, and we have collected soil samples, litter biomass and measured moisture at 5 cm depth in the soil. Soil CO, efflux varied significantly among species from 2,8±O,7f1mo l. m''. s' (mean ± standard deviation) to 7.4± 1.7fLmol. n'-' . s ' for Qualea rosea and Vochys ia tomentosa, respectively. 1'0 significant correlation was found between RSIlI variability and soil moisture, which is mostly related to soil texture in the experimental site. Soil CO2 efflux was significantly reduced in litter exclusion treatment and root exclusion plots (6 months litter and/or root exclusion) during ail measurements period and for ail species, compared to control plots. The reduction of soil CO, efflux was higher in plot without root than in plot without litter of control plot (42% and 25%, respectively). There was an import ant specific diversity in these reductions . We estimated the contribution of roof respiration (Rr) to total Rso1 by calculating the difference between Rso1 control and Rsn l root exclusion plot corrected for the decomposition of root that were killed following t re n e h in ~. Thus the heterotrophic component of soil carbon efflux accounts for 46% of total carbon efflux (1,9f1 mol. rn" . s•') while root respiration accounts for 54% of soil carbon release (2,3 ~t mo l. m-2 S-I) . Because there was a negative and significant correlation between microbial respiration (Rrn) and C/N of mature leaves it seemed to be possible to predict Rm if we known the mature leaves quality. In addition a good estimate theorical R ~, values from R~, measured in different treatments.
La respiration du sol en représentant une part de 80% de la respiration de l'écosystème apparaît être un flux majeur entre la biosphère et l'atmosphère. Nous avons étudié les effets de l'exclusion racinaire et de la litière sur le flux de CO, du sol (R ~ , ) en utilisant la méthode de " Trench-plots" et de suppression de litière dans une plantation d'arbres tropicaux. Ces arbres, âgés de 20 ans ont été plantés sur un sol uniforme, près de Kourou en Guyane française, en 16 placeaux mono-spécifiques. Pour mesurer les flux de CO2 provenant du sol, nous avons utilisé un analyseur différentiel de gaz infrarouge portable muni d'une chambre. Les mesures ont été faites sur 4 traitements différents tels que : le contrôle, l'exclusion racinaire, l'exclusion de litière et l'exclusion de litière et de racine et ce, répétés sur chacune des 16 placettes mono-spécifiques. Cette étude comporte 4 campagnes de mesures. Nous avons également effectué des prélèvements de sol de litière et nous avons fait des mesures d’humidité de sol à une profondeur de 5 cm. Les flux de C01 du sol varient fortement entre espèces de 2.8±O.7 ~t m o 1. m-2. sol à 7 A± 1. 7 ~t m o l. m•1 sol pour Qua/ev rosea ct Vochysto tomentasa, respectivement. Il n'existe pas de corrélation significative entre les variations de Rw l ct celles de l'humidité du sol (indication sur la texture du sol de la plantation ). Nous avons observé que Rso1 était significativement plus faible dans les placeaux sans racines et/ou sans litière (6 mois après la mise en place de l'expérimentation) pour toutes les campagnes de mesures et pour toutes les espèces que dans les placeaux contrôlés. Cette réduction du flux de CO2 du sol est plus forte dans les "trench-plots " que dans les traitement s d'exclusion de litière avec 42 et 25% respectivement. Un effet "traitement " et un effet "espèce" important expliquent 3 1"/.. ct 13% de la variabilité totale de R~. Nous avons cherché à connaître la contribution des racines dans les valeurs de R""I. en comparant le flux de CO2 provenant du sol sur des "trench -plot s'' au flux de COl provenant du sol dans les placeaux contrôlés . Cette estimation a été corrigée pour prendre en compte la décomposition des racines tuées par les tranchées. Ainsi, la composante appartenant aux micro -organismes représente 46% du flux total de carbone provenant du sol (1.9Jlmo l. m-2 S•I ) alors que la respiration des racines représente 54% du dégagement de carbone (2 ,3~lmol. m ol . 5-La respiration des micro-organismes pourrait être estimée en mesurant le C/N des feuilles matures puisqu'il existe une corrélation significative et négative entre les deux. Enfin les résultats obtenus sur les différents traitements permettent d'obtenir une bonne estimation de la respiration du sol avec un RSIlI théorique corrélé à 66% avec les valeurs réelles mesurées.
https://hal.archives-ouvertes.fr/hal-01189239

hal-01189239
https://hal.archives-ouvertes.fr/hal-01189239
PRODINRA : 18212

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The Black Rat (Rattus rattus) spread out of Asia to become one of the world's worst agricultural and urban pests, and a reservoir or vector of numerous zoonotic diseases, including the devastating plague. Despite the global scale and inestimable cost of their impacts on both human livelihoods and natural ecosystems, little is known of the global genetic diversity of Black Rats, the timing and directions of their historical dispersals, and the risks associated with contemporary movements. We surveyed mitochondrial DNA of Black Rats collected across their global range as a first step towards obtaining an historical genetic perspective on this socioeconomically important group of rodents. We found a strong phylogeographic pattern with well-differentiated lineages of Black Rats native to South Asia, the Himalayan region, southern Indochina, and northern Indochina to East Asia, and a diversification that probably commenced in the early Middle Pleistocene. We also identified two other currently recognised species of Rattus as potential derivatives of a paraphyletic R.rattus. Three of the four phylogenetic lineage units within R. rattus show clear genetic signatures of major population expansion in prehistoric times, and the distribution of particular haplogroups mirrors archaeologically and historically documented patterns of human dispersal and trade. Commensalism clearly arose multiple times in R. Rattus and in widely separated geographic regions, and this may account for apparent regionalism in their associated pathogens. Our findings represent an important step towards deeper understanding the complex and influential relationship that has developed between Black Rats and humans, and invite a thorough re-examination of host-pathogen associations among Black Rats.
PLoS ONE

ird-00714383
http://hal.ird.fr/ird-00714383
http://hal.ird.fr/ird-00714383/document
DOI : 10.1371/journal.pone.0026357
IRD : fdi:010055548

Résumé : The MEDECO Leg 2 cruise followed the MEDECO Leg 1 cruise that had crossed the Mediterranean Sea from the west to the east to study benthic communities of the Var canyon, deep corals found on the Calabrian Margin and cold seep ecosystems of the Mediterranean Ridge. The main objective of the MEDECO Leg 2 cruise was to study and compare, using a multidisciplinary approach, the structure and dynamics of deep-sea ecosystems at various active cold seep sites from the Nile deep sea fan and the Calabrian Arc, in the Eastern Mediterranean sea. During MEDECO Legs 1 & 2, a multiscale strategy was promoted to integrate (1) a high resolution cartography of geological structures (km2 scale), (2) a detailed mapping, including video imagery, of smaller-scale areas (scale 100 to 300 m2), (3) the physical, chemical and sedimentary characteristics of the habitat (multiscale), (4) the structure and functioning of faunal communities, including microbes, in terms of composition, diversity and biomass (multiscale), (5) small scale studies of interactions between organisms and their environment (scale < m2), (6) detailed ecophysiological studies at the organism scale on invertebrates. The use of the ROV “Victor 6000” and of various equipments for in situ and ex situ observations and measurements has helped reaching our objectives. The MEDECO cruise represented the key-Mediterranean cruise of the HERMES project “Hotspot Ecosystem Research on the Margins of European Seas” (P.I. P. Weaver, NOC-Southampton). The cruise was organized to follow the objectives of the HERMES program to better understand the functioning of deep ecosystems of the continental margins aiming at obtaining: (1) the description and quantification of the natural drivers (geological, hydrological, chemical factors) that control the distribution of ecosystems on margins; (2) the characterization and quantification of biodiversity, from bacteria to megafauna, as well as the knowledge of ecosystem functioning; (3) the study of ecosystems dynamics including the biology/physiology of key-species. Specific objectives. Colonization experiments conducted in the frame of two European programs, Diwoo and Chemeco, have given the opportunity to recover the fauna installed in the devices deployed during the Bionil cruise (2006) and to deploy new ones at the same site located in the pockmark area of the central province of Nile deep sea fan.

Droits : 2008 Insu, Cnrs, Locean
http://archimer.ifremer.fr/doc/00134/24550/22583.pdf
http://archimer.ifremer.fr/doc/00134/24550/

Éditeur(s) : HAL CCSD Paris : Muséum national d'histoire naturelle
Résumé : International audience
The chromosomal diversity within six species of Mormyridae belonging to six different genera (Gnathonemus petersii, Marcusenius moorii, Ivindomyrus obdenboschi, Brienomyrus sp., Stomatorhinus walkeri and Petrocephalus microphthalmus) is investigated for the first time. These species have a conserved diploid chromosome number of 2n = 50 (except G. petersii 2n = 48) but different chromosome formulae, essentially involving pericentric inversions. C-banding has been used for the localization of heterochromatin. For a deeper interspecific comparison, several molecular markers were localized in the chromosomes by fluorescence in situ hybridization (FISH): a 18S rDNA probe; a microsatellite probe (GAA)(10), and a telomeric probe (TTAGGG)(7). The distribution of the 18S rDNA patterns, in particular, shows an amazing specific diversity, confirming a rapid radiation accompanied by major chromosome rearrangements.
ISSN: 0399-0974

hal-01544756
https://hal.archives-ouvertes.fr/hal-01544756

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Metazooplankton abundance, biomass (<80 mu m, 200-500 mu m and >500 mu m) and community structure in the Ahe atoll were studied together with their relationships with environmental factors (temperature, salinity, wind) and trophic factors (phytoplankton, bacteria, heterotrophic nanoflagellates (HNF) and ciliates) during three periods in 2008-2009. Meroplankton, mainly bivalve and gastropod larvae, was dominant. Holoplankton was dominated by copepods, the main species being Oithona spp., Paracalanus parvus, Clausocalanus spp., Corycaeus spp., Acartia fossae and Undinula vulgaris. The results suggest a clear wind influence on the structure and horizontal distribution of the zooplankton communities. The metazooplankton appeared to be controlled mainly by food resources, suggesting a bottom-up control. The low nanophytoplankton biomass in contrast to the high abundance of picophytoplankton, HNF and nano-particle grazers (mainly Oithona spp., Paracalanus and bivalve larvae) highlighted the importance of the microbial loop in the food web. (C) 2012 Elsevier Ltd. All rights reserved.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012 , Vol. 65 , N. 10-12 , P. 538-548

Droits : 2012 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00101/21207/19419.pdf
DOI:10.1016/j.marpolbul.2012.01.025
http://archimer.ifremer.fr/doc/00101/21207/

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Understanding the distribution of genetic diversity in the light of past demographic events linked with climatic shifts will help to forecast evolutionary trajectories of ecosystems within the current context of climate change. In this study, mitochondrial sequences and microsatellite loci were analysed using traditional population genetic approaches together with Bayesian dating and the more recent approximate Bayesian computation scenario testing. The genetic structure and demographic history of a commercial fish, the black scorpionfish, Scorpaena porcus, was investigated throughout the Mediterranean and Black Seas. The results suggest that the species recently underwent population expansions, in both seas, likely concomitant with the warming period following the Last Glacial Maximum, 20 000 years ago. A weak contemporaneous genetic differentiation was identified between the Black Sea and the Mediterranean Sea. However, the genetic diversity was similar for populations of the two seas, suggesting a high number of colonizers entered the Black Sea during the interglacial period and/or the presence of a refugial population in the Black Sea during the glacial period. Finally, within seas, an east/west genetic differentiation in the Adriatic seems to prevail, whereas the Black Sea does not show any structured spatial genetic pattern of its population. Overall, these results suggest that the Black Sea is not that isolated from the Mediterranean, and both seas revealed similar evolutionary patterns related to climate change and changes in sea level.
ISSN: 1471-8278

hal-01330323
https://hal-univ-perp.archives-ouvertes.fr/hal-01330323
DOI : 10.1111/mec.13616

Éditeur(s) : HAL CCSD
Résumé : In this paper we report a study of the mating system and gene flow of Sextonia rubra, a hermaphroditic, insect pollinated tropical tree species with a geographic distribution in the Guyana Plateau and the Amazon. Using five microsatellites we analysed 428 seeds of 27 open pollinated families at the experimental site "Paracou" in French Guiana. We observed, compared to other tropical tree species, a high level of genetic diversity. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGenerapproach. The estimated multilocus outcrossing rate, tm, was 0.992 indicating nearly complete outcrossing. A significant level of biparental inbreeding and a small proportion of full-sibs were estimated for the 27 seed arrays. The differentiation of allelic frequencies among the pollen pools was ΦFT = 0.061. We estimated mean pollen dispersal distances between 65 m and 89 m according to the dispersal models used. The joint estimation of pollen dispersal and density of reproductive trees gave an effective density estimate of 2.1-2.2 trees/ha
Silvae genetica

hal-01031483
https://hal.archives-ouvertes.fr/hal-01031483

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The distribution of the lagoon cockle Cerastoderma glaucum is strongly fragmented and usually restricted to isolated, shallow and nontidal lagoons. A high level of genetic structuring was found among the European populations of this species based on mtDNA (COI) sequences, as well as allozymic and microsatellite markers. However, the strengths and geographic locations of the major divisions differed among markers. In the present study we characterized the diversity of a new, potentially universal exon-primed intron-crossing marker, i34, for 17 C. glaucum populations. Allele frequency data at the i34 locus were informative and relevant with respect to geography. Multivariate analyses of new data together with previously published microsatellites confirmed the divergent character of the Ionian Sea and the Aegean-Ponto-Caspian populations, but also revealed the existence of a genetic cline from the Bay of Biscay to the Baltic Sea. Some noncongruent patterns among loci were detected, which may reflect either differential introgression along the genome at the hypothetical contact zone, or selective sweeps. This strong genetic differentiation, and the occurrence of private alleles, may hint at the presence of cryptic species within C. glaucum.
ISSN: 0260-1230

hal-01444646
https://hal.archives-ouvertes.fr/hal-01444646
DOI : 10.1093/mollus/eyw019

Éditeur(s) : Academic Press Inc Elsevier Science
Résumé : Several Vibrio species are known to be pathogenic to the Pacific oyster Crassostrea gigas. Survival varies according to pathogen exposure and high mortality events usually occur in summer during gametogenesis. In order to study the effects of gametogenetic status and ploidy (a factor known to affect reproduction allocation in oysters) on vibriosis survival, we conducted two successive experiments. Our results demonstrate that a common bath challenge with pathogenic Vibrio splendidus and Vibrio aestuarianus on a mixture of mature, spawning and non-mature oysters can lead to significant mortality. Previous bath challenges, which were done using only non-mature oysters, had not produced mortality. Immunohisto-chemical analyses showed the affinity of Vibrio for gonadic tissues, highlighting the importance of sexual maturity for vibriosis infection processes in oysters. Mortality rate results showed poor repeatability between tanks, however, in this bath challenge. We then tested a standardized and repeatable injection protocol using two different doses of the same combination of two Vibrio species on related diploid and triploid oysters at four different times over a year. Statistical analyses of mortality kinetics over a 6-day period after injection revealed that active gametogenesis periods correspond to higher susceptibility to vibriosis and that there is a significant interaction of this seasonal effect with ploidy. However, no significant advantage of triploidy was observed. Triploid oysters even showed lower survival than diploid counterparts in winter. Results are discussed in relation to differing energy allocation patterns between diploid and triploid Pacific oysters. (C) 2010 Elsevier Inc. All rights reserved.
Journal Of Invertebrate Pathology (0022-2011) (Academic Press Inc Elsevier Science), 2011-02 , Vol. 106 , N. 2 , P. 179-191

Droits : 2010 Elsevier Inc. All rights reserved.
http://archimer.ifremer.fr/doc/00030/14108/11368.pdf
DOI:10.1016/j.jip.2010.09.003
http://archimer.ifremer.fr/doc/00030/14108/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Aims: A description of bacterial pathogens in shrimp ponds is necessary to understand their pathogenesis. Vibrio nigripulchritudo was shown to contain saprophytic and pathogenic strains among New Caledonian isolates. We established a method to map the development of V. nigripulchritudo in pond sediments at three different genetic levels: the species level, then at the pathogenic cluster level and finally at the plasmid level, present only in all highly pathogenic isolates. Methods and Results: PCR methods were applied to shrimp pond sediments both before and after a mortality outbreak. Using crude samples, the species V. nigripulchritudo is not detected at first (0/42 samples at day 56 post stocking) but appears frequently in the sediments after the mortality event (30/42 at day 107). The distribution of strains from the pathogenic cluster of V. nigripulchritudo also follows this pattern. In contrast, the pSFn1 virulence-associated plasmid was detected in one sample at day 56 and none at day 107. An enrichment method was developed to lower the detection limits of our assays. After enrichment, the species V. nigripulchritudo was detected in all samples at both dates. The number of samples positive for pSFn1 was 42/42 samples at day 56 and 29/42 at day 107. Conclusions: These results show that the sediments contain V. nigripulchritudo, notably pathogenic strains. Surprisingly, the virulence-associated plasmid pSFn1 found in all V. nigripulchritudo isolated from moribund shrimp appears less frequently in sediments, possibly being useless or even detrimental to its recipient bacteria in this environment. Significance and Impact of the Study: This study confirms the presence of pathogenic V. nigripulchritudo strains in shrimp pond sediment before a mortality outbreak complying with a previous hypothesis that sediments could be the infecting reservoir. After the outbreak, both total V. nigripulchritudo and pathogenic strains populations have largely increased, possibly contributing to the recurrent mortality observed in this shrimp vibriosis.
Journal Of Applied Microbiology (1364-5072) (Wiley-blackwell Publishing, Inc), 2010-06 , Vol. 108 , N. 6 , P. 2003-2011

Droits : 2010 The Society for Applied Microbiology - Wiley-Blackwell
http://archimer.ifremer.fr/doc/00004/11484/8177.pdf
DOI:10.1111/j.1365-2672.2009.04601.x
http://archimer.ifremer.fr/doc/00004/11484/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Numerical programs for simulating flow and reactive transport in porous media is essential for predicting reservoir properties related to CO2 sequestration performance, subsurface storage and risk assessment. In this paper we solve the Navier Stokes' equation using finite difference method, on a simulated porous rock structure, to study the velocity distribution of fluid flowing through it under a constant pressure gradient. A reactive solute carried through the fluid is allowed to interact with the minerals in the rock. This chemical reaction dissolves the mineral which changes the rock structure thus affecting its flow properties. These changes of flow properties are studied with variation in reactive solute concentration and pressure field. The different mechanisms of dissolution responsible for the variation of flow properties for the different parameters is predicted. Before the onset of homogeneous dissolution, variation in porosity follows a power-law behaviour with change in permeability when the latter is scaled by the concentration of the reactive species. The simulation results are compared with available experimental data and found to give a reasonable match.
ISSN: 0022-1694

hal-00757760
https://hal.archives-ouvertes.fr/hal-00757760
DOI : 10.1016/j.jhydrol.2012.05.024

Éditeur(s) : Museum National d'Histoire Naturelle
Résumé : During the " Jean Charcot " cruise Polymed II, 18 species of the 5 classes of Echinodermata have been collected in 15 samples from the bathyal zone of the Alboran sea. Most species are already known from the Mediterranean and the North East Atlantic. Some rare species (Odontaster mediterranea, Ophiactis balli) have been collected, and two others (Neocomatella europaea. Henricia abyssalis) are recorded for the first time in the Mediterranean. Endemic distributions of Ceramaster hystricis and Ophiocten abyssicolum are discussed. The Echinoderms population of the Alboran sea is noteworthy for its Atlantic characteristic, which is besides, dominating in the North part of this area. The atlantic biogeographical relationships of the Echinoderm fauna of the Alboran sea is especially perceptible in the northern part of the basin. [NOT CONTROLLED OCR]
Lors de la campagne Polymède II du " Jean Charcot ", 18 espèces appartenant aux cinq classes d'Échinodermes ont été récoltées dans 15 prélèvements effectués dans l'étage bathyal de la mer d'Alboran. La plupart des espèces sont connues à la fois de la Méditerranée et des côtes européennes et africaines de l'Atlantique. On peut signaler la récolte d'espèces considérées comme rares en Méditerranée (Odontaster mediterranea, Ophiactis balli) et d'autres nouvelles pour cette mer (Neocomatella europaea, Henricia abyssalis). L'endémisme de deux espèces Ceramaster hystricis et Ophiocten abyssicolum est rediscuté. La faune échinologique de la mer d'Alboran se caractérise par sa dominance atlantique par ailleurs plus sensible au nord qu'au sud. [OCR NON CONTRÔLE]
Bulletin du Museum National d'Histoire Naturelle (Museum National d'Histoire Naturelle), 1974-08 , Vol. 3 , N. 231 , P. 25-34

Droits : Museum National d'Histoire Naturelle
http://archimer.ifremer.fr/doc/1974/publication-4975.pdf
http://archimer.ifremer.fr/doc/00000/4975/

Éditeur(s) : HAL CCSD Wiley
Résumé : The routes through which Norway spruce recolonized the Alps after the last ice age were investigated at the genetic level. Seven populations along the Alpine range plus one Apennine population were characterized for seven sequence-characterized amplified region (SCAR) loci, detecting an overall FST = 0.118. This rather high value for forest species reflects an uneven distribution of genetic variability, and was analysed through different statistical methods. Alternative hypotheses were tested under the isolation-by-distance model and using the analysis of molecular variance (amova) frame. We conclude that the hypothesis of the existence of a glacial refugium in the Apennines should be rejected, while a putative relict population is identified in the Maritime Alps. The Alpine range of Norway spruce appears to be split in two parts across a north-south line. The results are discussed in comparison with data based on morphological markers, isozymes, chloroplast microsatellites and mitochondrial markers.
ISSN: 0962-1083

hal-01031243
https://hal.archives-ouvertes.fr/hal-01031243
DOI : 10.1046/j.1365-294x.2000.00911.x

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
Hydrogen distribution between nominally anhydrous minerals (NAMs) of a garnet-lherzolite under subsolidus conditions has been investigated. Separated NAMs from a garnet-peridotite from Patagonia (Chile) are annealed together (olivine, orthopyroxene, clinopyroxene, and garnet) using a piston-cylinder at 3 GPa and 1100 °C using talc-pyrex cell assembly for 10, 25, and 100 h. The talc-pyrex assembly provides enough hydrogen in the system to re-equilibrate the hydrogen concentrations at high pressure. The three coexisting nominally anhydrous minerals (NAMs, i.e., olivine, orthopyroxene, and clinopyroxene) were successfully analyzed using FTIR. The resulting hydrogen concentrations exceed significantly the initial hydrogen concentration by a factor of 13 for olivine and a factor of 3 for both pyroxenes. Once mineral-specific infrared calibrations are applied, the average concentrations in NAMs are 115 ± 12 ppm wt H2O for olivine, 635 ± 75 ppm wt H2O for orthopyroxene, and 1214 ± 137 ppm wt H2O for clinopyroxene, garnet grains are dry. Since local equilibrium seems achieved over time (for 100 h), the calculated concentration ratios are interpreted as mineral-to-mineral hydrogen partition coefficients (i.e., Nernst’s law) for a garnet-peridotite assemblage. It yields, based on mineral-specific infrared calibrations, DOpx/Ol = 5 ± 1, DCpx/Ol = 10 ± 2, and DCpx/Opx = 1.9 ± 0.4. While DCpx/Opx is in agreement (within error) with previous results from experimental studies and concentration ratios observed in mantle-derived peridotites, the DPx/Ol from this study are significantly lower than the values reported from mantle-derived xenoliths and also at odd with several previous experimental studies where melt and/or hydrous minerals co-exists with NAMs. The results confirm the sensitivity of hydrogen incorporation in olivine regarding the amount of water-derived species (H) in the system and/or the amount of water in the coexisting silicate melt. The results are in agreement with an important but incomplete dehydration of mantle-derived olivine occurring at depth, during transport by the host magma or during slow lava flow cooling at the surface. The rapid concentration modification in mantle pyroxenes also points out that pyroxenes might not be a hydrogen recorder as reliable as previously thought.
ISSN: 0003-004X

hal-01622132
https://hal.archives-ouvertes.fr/hal-01622132
DOI : 10.2138/am-2017-6089

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Here, the first description of an epsilon sulfur-oxidizing bacterium from sulfide-rich sediments of marine mangrove in Caribbean is reported. According to TEM, this new strain contains intracytoplasmic large internal sulfur granules as confirmed by EDXS analyses performed using ESEM. The sulfur distribution obtained for this sulfur-oxidizing bacterial strain allows to conclude that elemental sulfur is formed as an intermediate oxidation product and stored intracellularly. According to conventional SEM observations, bacterial cells are ovoid, extremely motile by lophotrichous flagella. Phylogenetic analyses based on the analysis of partial sequence of 16S rDNA confirm that such bacterial strain belongs to the Thiovulum cluster and could be a representative of a new species in this poorly studied genus of sulfur-oxidizing free-living bacteria. Thus, reduced sediment of marine mangrove represents sulfide-rich environment sustaining development of both gamma and epsilon sulfur-oxidizing Proteobacteria
ISSN: 0378-1097

hal-01682113
https://hal.univ-antilles.fr/hal-01682113
DOI : 10.1093/femsle/fnx172

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Key message: Genetic diversity appears to be unaffected by disturbance in a stand of the light-demanding Neotropical treeV. michelii. Although spatial genetic structure is modified in post-disturbance cohorts, mixing of seeds from different mother trees in canopy gaps appears to efficiently maintain genetic admixture. Context: The interplay between genetic and demographic processes has major consequences on population viability. Population size affects demographic trends, while genetic diversity insures viability by reducing risks of inbreeding depression and by maintaining adaptive potential. Yet, the consequences of increases in census size (as opposed to effective size) on genetic diversity of forest populations are poorly known. Aims: We have studied the structure of genetic diversity in populations of saplings of the light-responsive tree, Virola michelii (Myristicaceae, the nutmeg family), in two plots having undergone different levels of canopy-gap opening disturbance. This allowed us to test the “intermediate disturbance” hypothesis, which generally applies to species diversity, at the intra-specific scale. Methods: Levels and distribution of genetic diversity were compared between plots and between life stages. Sapling parentage was analysed to infer each adult tree’s contribution to regeneration. Results: Genetic diversity was higher, and spatial genetic structure was stronger in the post-disturbance than in the control seedling population. Parentage analysis suggested that a limited number of parents contributed to most of the regeneration, but that efficient mixing of their progeny may have enhanced the diversity of saplings occupying canopy gaps. Conclusion: A mixture of demo-genetic processes may contribute to maintain genetic diversity in spite of, or possibly due to, ecosystem disturbance in V. michelii.
ISSN: 1286-4560

hal-01502942
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942/document
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942/file/art_10.1007_s13595-015-0508-3-1_%7B869D58F4-272C-491F-A903-DAD6CDBDC042%7D.pdf
DOI : 10.1007/s13595-015-0508-3

Éditeur(s) : HAL CCSD Linnean Society of London
Résumé : International audience
The circumscription of Salicaceae has recently been enlarged to include a majority of the species formerly placed in the polyphyletic tropical family Flacourtiaceae. Several studies have reported a peculiar and infrequently formed multilayered structure of tension wood in four of the tropical genera. Tension wood is a tissue produced by trees to restore their vertical orientation, and most studies have focused on trees developing tension wood by means of cellulose-rich, gelatinous fibres, as is known in Populus L. and Salix L. (Salicaceae s.s.). This study aims to determine if the multilayered structure of tension wood is an anatomical characteristic common in other Salicaceae, and if so, how its distribution correlates to phylogenetic relationships. Therefore, we studied the tension wood of 14 genera of Salicaceae as well as two genera of Achariaceae, one genus of Goupiaceae, and one genus of Lacistemataceae, families closely related to Salicaceae or formerly placed in Flacourtiaceae. Opposite wood and tension wood were compared with light microscopy and 3D Laser Scanning Confocal Microscopy. The results indicate that a multilayered structure of tension wood is common in the family except in Salix, Populus, and one of their closest relatives, Idesia polycarpa Maxim. We suggest that tension wood may be a useful anatomical character in understanding phylogenetic relationships in Salicaceae. Further investigation is still needed on the tension wood of several other putatively close relatives of Salix and Populus, in particular Bennettiodendron Merr., Macrohasseltia L.O.Williams and Itoa Hemsl.
ISSN: 0024-4074

hal-01392845
https://hal.archives-ouvertes.fr/hal-01392845
https://hal.archives-ouvertes.fr/hal-01392845/document
https://hal.archives-ouvertes.fr/hal-01392845/file/GhislainEtAl2016_MultylayerTWSalicaceae_Bot_Jsur the_Lin_Soc_HALssfig.pdf
DOI : 10.1111/boj.12471