Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We report preliminary results of a seismological experiment, SEISMOTANZ'07, which consisted in the deployment of a local network (35 stations) in the East African Rift System (EARS), North Tanzania, during 6 months in 2007. We compare two earthquake sequences (Gelai and Manyara) occurring respectively in the southern end of the Kenya rift and in the North Tanzanian Divergence (NTD). Only distant of 150 km, their triggering mechanisms are different. None of the sequences depicts typical swarm or mainshock-aftershock patterns. They highlight the change in the magmatic/tectonic nature of the rift where the eastern branch of the EARS enters the Tanzanian craton. The similar shape and long-axis of the elongate sequences emphasize the preferred locus of active strain release along NE-SW discontinuities which probably root at depth into steep Proterozoic shear zones. At Gelai, the deformation is dominated by aseismic process involving slow slip on normal fault and dyke intrusion within the upper crust Calais_et_al_2008. The spatial and temporal earthquake distribution indicates a possible correlation between the Gelai crisis and the eruption of the nearby Oldoinyo Lengai volcano. At Manyara, the sequence is more uncommon, revealing a long-lasting seismic activity deepely rooted (20-35 km depth) possibly related to stress loading transmitted laterally. The yield stress envelope modelled from the depth frequency distribution of earthquakes in the NTD is consistent with the presence of a mafic lower crust and further supports the strength increase of the rifted crust from south Kenya to the NTD.
ISSN: 0899-5362

hal-00420599
https://hal.archives-ouvertes.fr/hal-00420599
DOI : 10.1016/j.jafrearsci.2009.09.005

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
Nowadays, technological advances in satellite imagery measurements as well as the development of dense geodetic and seismologic networks allow for a detailed analysis of surface deformation associated with active fault seismic cycle. However, the study of earthquake dynamics faces several limiting factors related to the difficulty to access the deep source of earthquake and to integrate the characteristic time scales of deformation processes that extend from seconds to thousands of years. To overcome part of these limitations and better constrain the role and couplings between kinematic and mechanical parameters, we have developed a new experimental approach allowing for the simulation of strike-slip fault earthquakes and analyze in detail hundreds of successive seismic cycle. Model rheology is made of multilayered visco-elasto-plastic analog materials to account for the mechanical behavior of the upper and lower crust and to allow simulating brittle/ductile coupling, postseismic deformation phase and far-field stress transfers. The kinematic evolution of the model surface is monitored using an optical system, based on subpixel spectral correlation of high-resolution digital images. First, results show that the model succeed in reproducing the deformation mechanisms and surface kinematics associated to the main phases of the seismic cycle indicating that model scaling is satisfactory. These results are comforted by using numerical algorithms to study the strain and stress distribution at the surface and at depth, along the fault plane. Our analog modeling approach appears, then, as an efficient complementary approach to investigate earthquake dynamics.
ISSN: 0278-7407

hal-01174176
https://hal.archives-ouvertes.fr/hal-01174176
DOI : 10.1002/2014TC003701

Éditeur(s) : HAL CCSD
Résumé : International audience
Hantaviruses' distribution is reassessed after performing a cladistic analysis on 93 strains isolated from rodents, and one used as out-group: Thottapalayam isolated from a shrew. While most hantaviruses found in wild animals were collected in northern Asia, Europe, North America, and South America, only Thottapalayam and Thailand were found in South and Southeastern Asia. Thottapalayam is highly divergent from the other known hantaviruses and may represent the emerging tip of a different lineage. Serological surveys carried out to detect evidence of Hantavirus in human populations revealed positive samples not only in West and Central Africa but also in Thailand, with a first case recently confirmed. This suggests that Hantaan-related viruses may infect humans out of their well-documented range. Thus, if rodents are probably the primary reservoir, other mammals may be involved in the cycle of hantaviruses. Additional work is needed out of the traditional areas where hantaviruses have been recorded. New viruses, different hosts, and different human syndromes may be discovered in the future mainly in Southeastern Asia and in Africa where Muridae rodents are present and highly diversified.
Annals New York Academy of Sciences

ird-00714427
http://hal.ird.fr/ird-00714427
http://hal.ird.fr/ird-00714427/document
DOI : 10.1196/annals.1373.004
IRD : fdi:010045640

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
In South America, the presence of the Leishmania RNA virus type 1 (LRV1) was described in Leishmania guyanensis and Leishmania braziliensis strains. The aim of this study was to determine the prevalence distribution of LRV1 in Leishmania isolates in French Guiana given that, in this French overseas department, most Leishmania infections are due to these parasite species. The presence of the virus was observed in 74% of Leishmania spp. isolates, with a highest presence in the internal areas of the country.
ISSN: 0002-9637

pasteur-01583614
https://hal-riip.archives-ouvertes.fr/pasteur-01583614
https://hal-riip.archives-ouvertes.fr/pasteur-01583614/document
https://hal-riip.archives-ouvertes.fr/pasteur-01583614/file/2016%20Ginouves%20et%20al.%20ajtmh.pdf
PUBMED : 26598572

Éditeur(s) : HAL CCSD Trans Tech Publications Inc.
Résumé : Two, high purity, Al-0.1 and 0.3wt%Mn alloys have been cold deformed in plane strain compression to strains of order 1.8 and the kinetics of subsequent recovery by sub-grain coarsening during annealing at 150-300°C measured by high resolution FEG-SEM EBSD. Accurate sub-grain size and misorientation distributions and their evolution with time and temperature have been determined. The average growth rates are then used to estimate the sub-grain boundary mobilities. Growth is analyzed by two well-known growth laws for the average sub-grain size δ (t): i) the standard relation for grain growth: where the exponent n takes values of 2-8 and ii) the relation proposed by Nes for dislocation climb in sub-grain walls: It is shown that the latter relation gives a better fit with the data in terms of the time and temperature dependence of the sub-grain sizes. In particular the activation energies for the logarithmic law are much closer to the values expected for solute-controlled movement of sub-boundaries.
Materials Science Forum

hal-00795441
https://hal.archives-ouvertes.fr/hal-00795441
DOI : 10.4028/www.scientific.net/MSF.715-716.725

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The early 2000s marked the end of the Golden age of the antibiotics and the beginning of the awareness on the potential threat to human health due to the dissemination of antimicrobial resistance. As a base-line study, we investigated the antimicrobial susceptibility of 99 strains of non-O1/non-O139 Vibrio cholerae isolated fromwastewater and shellfish in 2000/2001 within La Rance estuary (Brittany, France). All isolates were susceptible to amoxicillin-clavulanic acid, cefotaxime, imipenem, chloramphenicol, nalidixic acid, ciprofloxacin, norfloxacin, amikacin, gentamicin, tetracycline, doxycycline, trimethoprim-sulfamethoxazole, and erythromycin. The only resistances were to streptomycin, sulfonamides and ampicillin: 54.6% of the isolates had acquired resistance to at least one antimicrobial agent among them and only six isolates from cockles were multidrug resistant. On the basis of the distribution of a limited selection of resistance associated genes, our study shows that V. cholerae can constitute an environmental reservoir for these genes. However, none of our isolates harbored integron. This result casts doubt on the capacity of non-O1/non-O139 V. cholerae to acquire resistance-associated genes in such context, and on its potential role of indicator of the dissemination of antimicrobial resistance in the aquatic environment.
ISSN: 1664-302X

hal-01616065
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616065
DOI : 10.3389/fmicb.2017.01637
PUBMED : 28955305

Éditeur(s) : HAL CCSD WB Saunders
Résumé : International audience
: The apicomplexan parasite Toxoplasma gondii was discovered a little over one hundred years ago and was soon recognized as a pathogen responsible for congenital infection. But detailed understanding of its epidemiology emerged only after 1970 with the discovery of its life cycle. In the last ten years, high resolution molecular tools have allowed the characterization of various strain types with different virulence patterns, and current studies are exploring the distribution of these different genotypes. In parallel, sophisticated diagnostic tools have been developed and awareness of disease burden has led some European countries with high prevalence rates to implement screening of pregnant women. In this article, the screening options and therapies used to prevent congenital toxoplasmosis are dissected in the light of recent data from cohort studies and other epidemiological data.
ISSN: 0163-4453

hal-00875492
https://hal.archives-ouvertes.fr/hal-00875492
https://hal.archives-ouvertes.fr/hal-00875492/document
https://hal.archives-ouvertes.fr/hal-00875492/file/Robert-Gangneux_-_It_is_not_only_the_cat_that_did_it_-_how_to_prevent_and_treat_congenital_toxoplasmosis_HAL.d.pdf
DOI : 10.1016/j.jinf.2013.09.023

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
We present high resolution observations of microstructure and texture evolution during dynamic recrystallization (DRX) of ice polycrystals deformed in the laboratory at high temperature (≈0.98Tm). Ice possesses a significant viscoplastic anisotropy that induces strong strain heterogeneities, which result in an early occurrence of DRX mechanisms. It is therefore a model material to explore these mechanisms. High resolution c-axis measurements at sample scale by optical techniques and full crystallographic orientation measurements by cryo-Electron Back Scattering Diffraction (EBSD) provide a solid database for analyzing the relative impact of the macroscopic imposed stress vs. the local and internal stress fields on DRX mechanisms. Analysis of misorientation gradients in the EBSD data highlights a heterogeneous dislocation distribution, which is quantified by the Nye tensor estimation. Joint analyses of the dislocation density maps and microstructural observations highlight spatial correlation between high dislocation density sites and the onset of nucleation taking place by grain-boundary bulging, subgrain rotation or by the formation of kink-bands.
ISSN: 2296-6463

hal-01515284
https://hal.univ-lorraine.fr/hal-01515284
DOI : 10.3389/feart.2015.00081

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
How convergent systems distribute strain among frontal thrusts is a major concern regarding seismic hazard assessment. Along the 2500 km Himalayan arc, the seismic behavior of the Bhutan region is unknown, because it corresponds to the only portion of the arc where no evidence of major earthquakes has been reported. This can be due either to the fact that no active tectonic studies have been conducted or to continental shortening being absorbed by the Shillong plateau 150 km farther south. Analyzing offset fluvial terraces in south-central Bhutan shows that two major earthquakes ruptured the Himalayan frontal thrust during the last millennium, and that a comparable rate of Holocene deformation (∼20 mm/yr) is accommodated across the Himalaya in Bhutan as in central Nepal. Thus, the propensity for great earthquakes in Bhutan is similar to what is observed in neighboring portions of the Himalaya arc. This in turn suggests that the shortening process beneath the Shillong plateau has little effect on how strain accumulates within the Bhutanese Himalaya.
ISSN: 0091-7613

hal-01122799
https://hal.archives-ouvertes.fr/hal-01122799
DOI : 10.1130/G35162.1

Éditeur(s) : HAL CCSD
Résumé : International audience
Optimizing the resource extraction and limiting the environmental constraint motivate to accurately characterize reservoirs. The extraction of resources induces volume change of the reservoir causing displacements in the surrounding medium up to the surface. The resulting surface deformation is usually significant enough to be measurable by geodetic instruments (GPS, satellites, tiltmeters, strainmeters). However, the data needs to be associated to a reservoir model using an inverse scheme to allow the estimation of physical properties of the reservoir. Complete geodetic data including InSAR, GPS, tilt, strain and gravimetric data are uncommon for conventional, unconventional or mining exploitations. In this study, we work on the one site that gathers a wide range of geodetic data: the salt exploitation of Vauvert, France, operated by KemOne. Our approach aims at estimating the volume changes of the cavities created by the extraction combining all the available geodetic data. To do so, we minimize a global functional including weighting factors for each data type. The weighting factors are optimally estimated for our study and can be adapted depending on the issue. Hence, an optimal distribution of data can be suggested for a specific reservoir characterization.
79th EAGE Conference
Paris, France

Droits : http://hal.archives-ouvertes.fr/licences/copyright/
hal-01575426
https://hal.archives-ouvertes.fr/hal-01575426
https://hal.archives-ouvertes.fr/hal-01575426/document
https://hal.archives-ouvertes.fr/hal-01575426/file/reservoir-characterization-inversion.pdf
DOI : 10.3997/2214-4609.201700987

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Genetic recombination occurs during meiosis, the key developmental programme of gametogenesis. Recombination in mammals has been recently linked to the activity of a histone H3 methyltransferase, PR domain containing 9 (PRDM9), the product of the only known speciation-associated gene in mammals. PRDM9 is thought to determine the preferred recombination sites--recombination hotspots--through sequence-specific binding of its highly polymorphic multi-Zn-finger domain. Nevertheless, Prdm9 knockout mice are proficient at initiating recombination. Here we map and analyse the genome-wide distribution of recombination initiation sites in Prdm9 knockout mice and in two mouse strains with different Prdm9 alleles and their F(1) hybrid. We show that PRDM9 determines the positions of practically all hotspots in the mouse genome, with the exception of the pseudo-autosomal region (PAR)--the only area of the genome that undergoes recombination in 100% of cells. Surprisingly, hotspots are still observed in Prdm9 knockout mice, and as in wild type, these hotspots are found at H3 lysine 4 (H3K4) trimethylation marks. However, in the absence of PRDM9, most recombination is initiated at promoters and at other sites of PRDM9-independent H3K4 trimethylation. Such sites are rarely targeted in wild-type mice, indicating an unexpected role of the PRDM9 protein in sequestering the recombination machinery away from gene-promoter regions and other functional genomic elements.
ISSN: 0028-0836

hal-00877666
https://hal.archives-ouvertes.fr/hal-00877666
DOI : 10.1038/nature11089
PUBMED : 22660327

Éditeur(s) : HAL CCSD Elsevier
Résumé : Spinel peridotite xenoliths from Persani Mountains, Southeastern Carpathians, Romania, were submitted to deformation by dislocation creep accompanied by dynamic recrystallization under variable stress and temperature conditions. Predominance of low-angle boundaries parallel to (100) with well-defined [Ovw] rotation axes in olivine indicates that subgrain rotation is the main recrystallization mechanism and that dislocation glide occurs mainly in [100]{0k1} systems. Analysis of olivine crystal preferred orientations highlights that recrystallization results in dispersion of the orientations of recrystallized grains relatively to the parent grains. This dispersion may be quantified by a dimension-less dispersion factor defined as the ratio of the random component of the [100] axis distributions between the recrystallized grains and porphyroclasts. This factor is largely independent from the overall fabric strength, the number of grains analyzed, and the recrystallized grain size. The olivine CPO strength and anisotropy at the rock scale, quantified by J-index, are largely controlled by the volume of recrystallized grains, which depends on finite strain. Comparison of olivine CPO in coarse- and fine-grained porphyroclastic peridotites shows that deviatoric stress and temperature conditions play nevertheless a role on the CPO evolution during recrystallization; selective grain growth, which is favored at high temperature and low stresses, does counteract the dispersion produced by the nucleation processes.
ISSN: 0191-8141

hal-00669963
https://hal.archives-ouvertes.fr/hal-00669963
DOI : 10.1016/j.jsg.2011.09.010

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We analyze the kinematics of fault tip folding at the front of a fold-and-thrust wedge using a sandbox experiment. The analog model consists of sand layers intercalated with low-friction glass bead layers, deposited in a glass-sided experimental device and with a total thickness h = 4.8 cm. A computerized mobile backstop induces progressive horizontal shortening of the sand layers and therefore thrust fault propagation. Active deformation at the tip of the forward propagating basal décollement is monitored along the cross section with a high-resolution CCD camera, and the displacement field between pairs of images is measured from the optical flow technique. In the early stage, when cumulative shortening is less than about h/10, slip along the décollement tapers gradually to zero and the displacement gradient is absorbed by distributed deformation of the overlying medium. In this stage of detachment tip folding, horizontal displacements decrease linearly with distance toward the foreland. Vertical displacements reflect a nearly symmetrical mode of folding, with displacements varying linearly between relatively well defined axial surfaces. When the cumulative slip on the décollement exceeds about h/10, deformation tends to localize on a few discrete shear bands at the front of the system, until shortening exceeds h/8 and deformation gets fully localized on a single emergent frontal ramp. The fault geometry subsequently evolves to a sigmoid shape and the hanging wall deforms by simple shear as it overthrusts the flat ramp system. As long as strain localization is not fully established, the sand layers experience a combination of thickening and horizontal shortening, which induces gradual limb rotation. The observed kinematics can be reduced to simple analytical expressions that can be used to restore fault tip folds, relate finite deformation to incremental folding, and derive shortening rates from deformed geomorphic markers or growth strata.
ISSN: 2169-9313

hal-00138061
https://hal.archives-ouvertes.fr/hal-00138061
https://hal.archives-ouvertes.fr/hal-00138061/document
https://hal.archives-ouvertes.fr/hal-00138061/file/Bernard_et_al-2007-Journalsur Geophysical_Research__Solid_Earth_%281978-2012%29.pdf
DOI : 10.1029/2005JB004149

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : Tectonics, v. 27, p. TC5011, 2008. http://dx.doi.org/10.1029/2007TC002232
International audience
The seismic activity of the Ligurian Basin, the northeastern termination of the western Mediterranean basin, is larger than in surrounding regions, even though recent geodetic studies attest that this area is subject to very low levels of deformation. This basin is an example of a type of passive margins that cannot be considered solely as inert sites of sedimentation and of progressive subsidence and that are reactivated in a compressive pattern; other examples include the Kwanza basin (Angola) and the Brazil margin. We investigated, by means of 2-D thermomechanical modeling, the structural and rheological heterogeneities that can lead to concentration of strain in this marginal basin. We deduced that the deformation of the basin is due to its particular geometric features, narrow and with a thick surrounding continental crust, related to its position at the southern termination of the Alps. This sharp transition, in terms of both geometry and rheological contrast, is a main factor in explaining the weakness of the margin. We discuss the importance of buoyancy forces versus tectonic forces, as well as thermal effects, on the observed reactivation. Influence of contrast in rheology between an oceanic-type crust and continental crust is also studied. Geodynamical implications are proposed for the region. The good agreement between the predicted localized deformation and the observed seismicity distribution should help improve seismic hazard assessment in the region.
ISSN: 0278-7407

hal-00407859
https://hal.archives-ouvertes.fr/hal-00407859
DOI : 10.1029/2007TC002232

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Our ability to decipher the mechanisms behind metamorphic transformation processes depends in a major way on the extent to which crystallographic and microstructural information is transferred from one stage to another. Within the Leka Ophiolite Complex in the Central Norwegian Caledonides, prograde olivine veins that formed by dehydration of serpentinite veins in dunites exhibit a characteristic distribution of microstructures: The outer part of the veins comprises coarse-grained olivine that forms an unusual, brick-like microstructure. The inner part of the veins, surrounding a central fault, is composed of fine-grained olivine. Where the fault movement included a dilational component, optically clear, equant olivine occurs in the centre. Electron backscatter diffraction mapping reveals that the vein olivine has inherited its crystallographic preferred orientation (CPO) from the olivine in the porphyroclastic host rock; however, misorientation is weaker and associated to different rotation axes. We propose that prograde olivine grew epitaxially on relics of mantle olivine and thereby acquired its CPO. Growth towards pre-existing microfractures along which serpentinisation had occurred led to straight grain boundaries and a brick-like microstructure in the veins. When dehydration embrittlement induced slip, a strong strain localisation on discrete fault planes prevented distortion of the CPO due to cataclastic deformation; grain size reduction did not significantly modify the olivine CPO. This illustrates how a CPO can be preserved though an entire metamorphic cycle, including hydration, dehydration, and deformation processes, and that the CPO and the microstructures (e.g. grain shape) of one phase do not necessarily record the same event.
ISSN: 0010-7999

hal-01622643
https://hal.archives-ouvertes.fr/hal-01622643
DOI : 10.1007/s00410-017-1378-5

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Based on global earthquake catalogs, the hypocenters, nodal planes, and seismic moments of worldwide subduction plate interface earthquakes were extracted for the period between 1900 and 2007. Assuming that the seismogenic zone coincides with the distribution of 5.5 <= M < 7 earthquakes, the subduction interface seismogenic zones were mapped for 80% of the trench systems and characterized with geometrical and mechanical parameters. Using this database, correlations were isolated between significant parameters to identify cause-effect relationships. Empirical laws obtained in previous studies were revisited in light of this more complete, accurate, and uniform description of the subduction interface seismogenic zone. The seismogenic zone was usually found to end in a fore-arc mantle, rather than at a Moho depth. The subduction velocity was the first-order controlling parameter for variations in the physical characteristics of plate interfaces, determining both the geometry and mechanical behavior. As such, the fast subduction zones and cold slabs were associated with large and steep plate interfaces, which, in turn, had large seismic rates. The subduction velocity could not account for the potential earthquake magnitude diversity that was observed along the trenches. Events with M-w >= 8.5 preferentially occurred in the vicinity of slab edges, where the upper plate was continental and the back-arc strain was neutral. This observation was interpreted in terms of compressive normal stresses along the plate interface. Large lateral ruptures should be promoted in neutral subduction zones due to moderate compressive stresses along the plate interface that allow the rupture to propagate laterally.
ISSN: 1525-2027

hal-00617681
https://hal.archives-ouvertes.fr/hal-00617681
https://hal.archives-ouvertes.fr/hal-00617681/document
https://hal.archives-ouvertes.fr/hal-00617681/file/heuretG32011.pdf
DOI : 10.1029/2010GC003230

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Deep crustal and mantle rocks are exhumed in core complex mode of extension in three types of structures: metamorphic core complexes, oceanic core complexes and magma poor passive margins. Using available analogue and numerical models and their comparison with natural examples, the present paper reviews the mechanical processes involved in these different types of extensional setting. Three main aspects are considered: i) the primary role of lithosphere rheology, ii) the lithosphere-scale patterns of progressive deformation that lead to the exhumation of deep metamorphic or mantle rocks and iii) the initiation and development of detachment zones. Crustal core complexes develop in continental lithospheres whose Moho temperature is higher than 750 °C with “upper crust-dominated” strength profiles. Contrary to what is commonly believed, it is argued from analogue and numerical models that detachments that accommodate exhumation of core complexes do not initiate at the onset of extension but in the course of progressive extension when the exhuming ductile crust reaches the surface. In models, convex upward detachments result from a rolling hinge process. Mantle core complexes develop in either the oceanic lithosphere, at slow and ultra-slow spreading ridges, or in continental lithospheres, whose initial Moho temperature is lower than 750 °C, with “sub-Moho mantle-dominated” strength profiles. It is argued that the mechanism of mantle exhumation at passive margins is a nearly symmetrical necking process at lithosphere scale without major and permanent detachment, except if strong strain localization could occur in the lithosphere mantle. Distributed crustal extension, by upper crust faulting above a décollement along the ductile crust increases toward the rift axis up to crustal breakup. Mantle rocks exhume in the zone of crustal breakup accommodated by conjugate mantle shear zones that migrate with the rift axis, during increasing extension.
ISSN: 0040-1951

insu-01610186
https://hal-insu.archives-ouvertes.fr/insu-01610186
https://hal-insu.archives-ouvertes.fr/insu-01610186/document
https://hal-insu.archives-ouvertes.fr/insu-01610186/file/brun-tect-2017.pdf
DOI : 10.1016/j.tecto.2017.09.017