Résumé : Aquafarming in Guyana (Macrobrachium Rosenbergii) finds itself confronted today with a serious economic problem linked to a concurrence of factors of differing origins. - The absence of markets (an apparently cyclical phenomenon) has hindered many operations and calls into question the producing sector in its current form (See table 5: stock SICA 1987). But behind this difficulty, other deeper and longer-lasting ones call for questions to be asked. During analysis of the sector, structural blockages appear from the first years of operations, which, combined with the prolonged absence of revenue, accelerates a process of decline (see the spiral of recession in the text). These other factors are: - 1) An environment that hinders the creation of new farms (difficulties and delay of basin construction sites, wavering about the chosen farming techniques, changes while engaged in operations...) - 2) A complete unawareness of the true capabilities of markets and competitors. - 3) An overestimation of possible yields in the first years. - 4) Underestimating cash flow needs and the consequences of taking out a large loan (see appendix 5, corporate earnings). - 5) Difficulty with implementing a solid and sustainable business structure. - 6) A serious and rapid deterioration of relations among the people involved in this production sector caused by a great deal of confusion about the role, attributions and sphere of expertise of each one of them (confusion in particular among IFREMER, France Aquaculture, and Guyane Aquaculture). Taken all together, these factors mean that we must consider today that the solutions proposed in response to the problem of marketing (See appendix 8 on the DDA proposal and appendix 9 on the GEM report), cannot suffice either to revive discontinued farms or to go ahead with planned projects.
(OCR non controlé) L'aquaculture en Guyane (Macrobrachium Rosenbergii) se trouve confrontée aujourd'hui à un grave problème économique lié à la conjonction de facteurs de natures distinctes. - L'absence de débouchés (phénomène en apparence conjoncturel) est venu bloquer bon nombre d'exploitations et remet en cause le secteur productif dans sa forme actuelle (Cf.tableau 5 : stock SICA 1987). Mais derrière cette difficulté, d'autres plus profondes et durables amènent à poser des questions. A l'analyse du secteur, des blocages structurels apparaissent, dès les premières années d'exploitation, qui combinés à l'absence prolongée de recettes, accélèrent un processus de déclin (cf dans le texte la spirale de la récession). Ces autres facteurs sont : - 1 ) Un environnement contraignant pour la création des fermes (difficultés et retard des chantiers de construction de bassins, hésitations sur les techniques d'élevage choisies, modifications en cours d'exploitation...) - 2 ) Une méconnaissance totale des capacités réelles des marchés et des concurrents. - 3 ) Une sur-estimation des rendements possibles les premières années. - 4 ) Une sous estimation des besoins de trésorerie et des conséquences d'un recours à l'emprunt important (cf annexe 5 résultats d'entreprises). - 5 ) Une difficulté à mettre en place une structure professionnelle solide et pérenne. - 6 ) Une grave et rapide dégradation des relations entre les acteurs de ce secteur de production causée par de sérieuses confusions sur le rôle, les attributions et les domaines de compétences de chacun d'eux (confusion notamment entre IFREMER, FRANCE AQUACULTURE, GUYANE AQUACULTURE). L'ensemble de ces facteurs fait que l'on doit considérer aujourd'hui que les solutions proposées en réponse au problème de commercialisation (Cf annexe 8 sur proposition DDA et annexe 9 sur rapport GEM), ne peuvent suffire ni pour relancer les fermes arrêtées ni pour réaliser les projets envisagés). Celles ci ne tiennent pas compte de la dégradation des relations entre les différents partenaires et reposent uniquement sur une intégration accrue des producteurs dans un environnement que pourtant la plupart ont déjà rejeté (ceci est caractéristique de la proposition de Mr FINET, DDA GUYANE ; cf annexe 8). - Il convient de plus de réviser sérieusement les seuils de rentabilité des entreprises en tenant compte d'un prix de revient qui intégre la totalité des charges imputables à ces productions et non plus seulement une partie comme cela a trop souvent été le cas. Le calcul du prix de revient sur la base des données comptables d'une exploitation (cf annexe 5) donne comme résultat la valeur de 90 Frs/Kg si on tient compte d'une estimation des charges imputables à une partie de production non pêchée, stockée en bassin. Si on ne prend pas en compte cette estimation, le prix s'établit au niveau de 130 Frs. Dans les deux cas les prix de vente actuels ne laissent entrevoir un quelconque bénéfice. Ceci résume bien le problème majeur de cette activité. Si on prévoit la remise en activité des fermes aujourd'hui stoppées, on doit prendre en considération que cela va inévitablement accroître leurs charges financières par un recours supplémentaire au crédit. Le prix de revient s'alourdira d'autant. Cette hypothèse n'étant réalisable qu'aprés une confiance retrouvée auprés des banquiers, ce qui en l'état actuel est loin d'être gagné. - C'est l'ensemble de ces contraintes qu'il convient de prendre en compte aujourd'hui si on souhaite tirer un bilan sérieux et objectif sur cette expérience dont les effets escomptés sont loin d'être obtenus (effet sur la balance commerciale déficitaire en crevettes, effet sur le développement de la Guyane...). Ce n'est qu'au terme d'un travail d'analyse technique mais aussi économique qu'un réajustement des prévisions de base pourra être effectué. Mais parallèlement à cette démarche, une re-définition de l'organisation du secteur doit être recherchée. Ceci passe entre autre par une re-définition claire de la place et du rôle de chacun des organismes qui sont amenés à intervenir dans cette activité. Sans cela toute proposition d'action risque d'aboutir à trés court terme à un nouvel échec.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1988/rapport-2300.pdf
http://archimer.ifremer.fr/doc/00000/2300/

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : Absolute Mα and Mβ X-ray intensities were measured for the elements Pt, Au, Pb, U, and Th by electron impact for energies ranging from 6 to 38 keV. Experimental data were obtained by measuring the X-ray intensity emitted from bulk samples with an electron microprobe using high-resolution wavelength-dispersive spectrometers. Recorded X-ray intensities were converted into absolute X-ray yields by evaluation of the detector efficiency and then compared with X-ray intensities calculated by means of Monte Carlo simulations. Simulated Mα and Mβ X-ray intensities were found to be in good agreement with the measurements, allowing their use in standardless quantification methods. A procedure and a software program were developed to accurately obtain virtual standard values. Standardless quantifications of Pb and U were tested on standards of PbS, PbTe, PbCl2, vanadinite, and UO2.
ISSN: 0003-2700

hal-01217495
https://hal.archives-ouvertes.fr/hal-01217495
DOI : 10.1021/acs.analchem.5b01443

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Orogenic lherzolites exhibit a specific (although reproducible) platinum-group element signature characterized by slight positive deviations of Pd/Ir, Rh/Ir and Ru/Ir ratios from the canonical chondritic model. Such a signature was alternatively considered to be a compositional feature of the primitive upper mantle or resulting from sulfide melt addition by refertilisation reactions in the continental lithosphere. To shed additional light on this conundrum, the distribution of PGE in FON B 93, an unserpentinized, fertile (3.24% Al2O3) orogenic lherzolite (French Pyrenees) used as in-house standard by our group, has been studied to different scales, from the bulk rock to trace minerals. In addition to new ICPMS analyses after separation into Nis and Te coprecipitation, its whole-rock PGE concentrations were redetermined by three different laboratories using very precise ID-ICP-MS methods after digestion of the sample in Carius tube at T=250 degrees C and 320 degrees C or in high-pressure asher (HPA-S). The four methods produce reproducible Ru, Rh and Pd contents (7.1 +/- 0.18 ppb; 1.43 +/- 0.05 ppb; 7.1 +/- 0.30 ppb) whereas the non-ID NiS-fire assay method underestimates the Os and Ir concentrations by c.a. 10 and 15% compared to ID-ICP-MS analyses (4.40 +/- 0.07 and 4.00 +/- 0.17 ppb, respectively). Platinum was the most difficult to analyse. If performed on powder aliquots smaller than 3 g, the ID-ICP-MS analyses generate strong nugget effects while the non-ID NiS-fire assay method yields statistically lower (but highly reproducible) Pt concentrations (6.92 +/- 0.26 ppb). These features reflect the strong partitioning of Pt into trace phases that SEM and laser ablation-ICP-MS analyses on thin sections identify as both high-temperature Pt-Ir-Os alloys and Pt-(Pd) tellurides of likely subsolidus origin; ten to fifteen grains ranging in maximum dimension from a few micrometres to a few hundreds of nanometers, were identified by standard polished thin section. LA-ICP-MS data on base metal sulfides (25 grains analysed), coupled with the whole-rock S concentration (277 +/- 10 ppm) and modal composition of the BMS (90% pentlandite+accessory pyrite and secondary pyrrhotite + 10% chalcopyrite) allowed the contribution of the BMS phase to the PGE budget of FON B 93 to be estimated. Except Pt that exhibits a 95% deficit in the BMS phase, the PGE concentrations measured by ID-ICP-MS can be balanced by BMS while Al-spinel is a negligible contributor, accounting for less than 0.5% of the Ru budget. The occurrence of Pt in trace phases may bias the whole-rock Pt concentrations because 1) mechanical collection of Pt-rich trace phases remains problematic with the Nis button, and 2) Pt-Ir-Os alloys may be prone to digestion problems in conventional Carius tube procedures. Since they could be stable at mantle depth, such refractory alloys that contain Os and Ir may also have enhanced the heavy PGEs/light PGEs fractionation. Our observations likely pertain to orogenic lherzolites as a whole because BMS assemblages in these mantle rocks record evolution at low sulfur fugacity, which prevents Pt-Ir-Os alloy from entering the Mss in the mantle; moreover, at subsolidus temperature, pentlandite, the major BMS, cannot accommodate 0 valence state Pt.
ISSN: 0009-2541

hal-00411486
https://hal.archives-ouvertes.fr/hal-00411486
DOI : 10.1016/j.chemgeo.2007.06.030

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The late Carboniferous accretionary system of the South Tianshan orogen (North-Western China) underwent complex structural and polymetamorphic evolution. Combined petrological, geochronological and microstructural analysis of (ultra)high-pressure (UHP) metabasites (eclogites and blueschists) enclosed in metapelites show a relict coarse-grained eclogitic fabric S2 surrounded by a dominant fine-grained eclogite and blueschist facies retrograde fabric S2. The S2 fabric is reworked by upright folds F3 that are responsible for a major shortening of the whole accretionary system. For both the eclogite and blueschist, peak and retrograde P–T conditions have been thermodynamically constrained at 25–26 kbar and 425–500 °C and 10–13 kbar and 500−550 °C respectively, suggesting a shared exhumation history. The garnet-whole rock-amphibole isochron in the blueschist yielded Lu–Hf and Sm–Nd ages of 326.0 ± 2.9 Ma and 318.4 ± 3.9 Ma respectively, interpreted to date the prograde to peak metamorphic assemblage. The retrograde path of the eclogite is characterized by heterogeneous omphacite recrystallization into a mylonitic fine-grained matrix and crystallization of blue amphibole. Microstructures in both pristine porphyroclastic and recrystallized fine-grained domains in the eclogite indicate a gradual evolution from constriction-dominated (L>S-type) to flattening-dominated (S>L-type) type of deformation, increase of fabric intensity reflected by gradually growing M-indexes and the development of lattice preferred orientation (LPO) typical for dislocation creep under slightly hydrated conditions. Recrystallization of the matrix in the blueschist is homogeneous, which indicates a matrix dominated channel flow during exhumation. These LPOs evolutions suggest a significant mechanical coupling with the upper plate concomitant with oroclinal bending of the Kazakh orocline. Lock up of Kazakh orocline is responsible for further stress increase resulting in horizontal shortening of South Tianshan accretionary wedge and development of D3 upright folding and steepening of the whole sequence.
ISSN: 1342-937X

hal-01481263
https://hal.archives-ouvertes.fr/hal-01481263
DOI : 10.1016/j.gr.2016.07.007

Éditeur(s) : HAL CCSD Elsevier
Résumé : DNA metabarcoding on soil samples is increasingly used for large-scale and multi-taxa biodiversity studies. However, DNA extraction may be a major bottleneck for such wide uses. It should be cost/time effective and allow dealing with large sample volumes so as to maximise the representativeness of both micro- and macro-organisms diversity. Here, we compared the performances of a fast and cheap extracellular DNA extraction protocol with a total DNA extraction method in retrieving bacterial, eukaryotic and plant diversity from tropical soil samples of ca. 10 g. The total DNA extraction protocol yielded more high-quality DNA. Yet, the extracellular DNA protocol provided similar diversity assessments although it presented some differences in clades relative abundance and undersampling biases. We argue that extracellular DNA is a good compromise between cost, labor, and accuracy for high throughput DNA metabarcoding studies of soil biodiversity.
ISSN: 0038-0717

hal-01532638
https://hal.archives-ouvertes.fr/hal-01532638
DOI : 10.1016/j.soilbio.2016.01.008
PRODINRA : 384522

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We report measurements of long-period P wave polarization (P pol) in Australia and Tahiti made by combining modeling of the polarization deviation and harmonic analysis. The analysis of the deviation of the horizontal polarization of the P wave as a function of event back azimuth may be used to obtain information about (1) sensor misorientation, (2) dipping discontinuities, (3) seismic anisotropy, and (4) velocity heterogeneities beneath a seismic station. The results from harmonic analysis and a grid search using Snell's law suggest the presence of a dipping seismic discontinuity beneath stations CTAO and CAN in Australia. These results are consistent with published receiver function studies for these stations. The P pol fast axis orientation is close to the N–S absolute plate motion direction at station TAU (Tasmania), which may be due to plate-motion-driven alignment of olivine crystals in the asthenosphere. Interestingly, measurements of SKS splitting at Tahiti (French Polynesia) show an apparent isotropy, whereas an inversion of P pol observations at PPTL seismic station located in Tahiti suggests the presence of two anisotropic layers. The fast axis azimuth is oriented E–W in the upper layer, and it is close to the NW–SE orientation in the lower layer. Since P pol orientations are used for real-time earthquake locations, especially in poorly instrumented areas such as the South Pacific, we show that the bias from anisotropy and sensor misorientation determined here can be corrected to improve the location accuracy, which yields fundamental data for rapid location necessary for effective tsunami warning.
ISSN: 2169-9313

hal-01389113
http://hal.univ-reunion.fr/hal-01389113
http://hal.univ-reunion.fr/hal-01389113/document
http://hal.univ-reunion.fr/hal-01389113/file/Fontaine_Ppol_JGR2009.pdf
DOI : 10.1029/2008JB005709

Éditeur(s) : HAL CCSD
Résumé : International audience
The SOX8 and SOX9 transcription factors are involved in, among others, sex differentiation, male gonad development and adult maintenance of spermatogenesis. Sox8(-/-) mice lacking Sox9 in Sertoli cells fail to form testis cords and cannot establish spermatogenesis. Although genetic and histological data show an important role for these transcription factors in regulating spermatogenesis, it is not clear which genes depend upon them at a genome-wide level. To identify transcripts that respond to the absence of Sox8 in all cells and Sox9 in Sertoli cells we measured mRNA concentrations in testicular samples from mice at 0, 6 and 18 days post-partum. In total, 621 and 629 transcripts were found at decreased or increased levels, respectively, at different time points in the mutant as compared to the control samples. These mRNAs were categorized as preferentially expressed in Sertoli cells or germ cells using data obtained with male and female gonad samples and enriched testicular cell populations. Five candidate genes were validated at the protein level. Furthermore, we identified putative direct SOX8 and SOX9 target genes by integrating predicted SOX-binding sites present in potential regulatory regions upstream of the transcription start site. Finally, we used protein network data to gain insight into the effects on regulatory interactions that occur when Sox8 and Sox9 are absent in developing Sertoli cells. The integration of testicular samples with enriched Sertoli cells, germ cells and female gonads enabled us to broadly distinguish transcripts directly affected in Sertoli cells from others that respond to secondary events in testicular cell types. Thus, combined RNA profiling signals, motif predictions and network data identified putative SOX8/SOX9 target genes in Sertoli cells and yielded insight into regulatory interactions that depend upon these transcription factors. In addition, our results will facilitate the interpretation of genome-wide in vivo SOX8 and SOX9 DNA binding data.
Andrology

hal-00877013
https://hal.archives-ouvertes.fr/hal-00877013
DOI : 10.1111/j.2047-2927.2012.00049.x
PUBMED : 23315995

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The platinum-group element (PGE) systematics of continental mantle peridotites show large variability, reflecting petrogenetic processing of the upper mantle during partial melting and melt/fluid percolation inside the lithosphere. By removing Pd-Cu-Ni rich sulfides, partial melting events that have stabilized the sub-continental mantle lithosphere fractionated PPGEs (Palladium-group PGE; Pt, Pd) relative to IPGEs (Iridium-group PGE; Os, Ir, Ru, Rh). Residual base-metal sulfides (BMS) survive as enclosed IPGE-enriched Monosulfide Solid Solutions (Mss), which otherwise decompose into Ru-Os-Ir-rich refractory platinum-group minerals (PGMs) once the partial melts become S-undersaturated. The small-scale heterogeneous distribution of these microphases may cause extreme nugget effects, as seen in the huge variations in absolute PGE concentrations documented in cratonic peridotites. Magmas fluxing through the lithospheric mantle may change the initial PGE budgets inherited from the melting events, resulting in the great diversity of PGE systematics seen in peridotites from the sub-continental lithosphere. For instance, melt-rock reactions at increasing melt/rock ratios operate as open-system melting processes removing residual BMS/PGMs. Highly percolated peridotites are characterized by extreme PGE depletion, coupled with PGE patterns and Os-isotope compositions that gradually evolve toward that of the percolating melt. Reactions at decreasing melt-rock ratios (usually referred to as "mantle metasomatism") precipitate PPGE-enriched BMS that yield suprachondritic Pd/Ir and occasionally affect Pt/Ir and Rh/Ir ratios as well. Moreover, volatile-rich, small volume melts fractionate Os relative to Ir and S relative to Se, thereby producing rocks with supra-chondritic Os/Ir and S/Se coupled with supra-chondritic Pd/Ir and Pt/Ir. Major magmatic inputs at the lithosphere-asthenosphere boundary may rejuvenate the PGE systematics of the depleted mantle. Integrated studies of "refertilized" peridotites with worldwide provenance provide evidence for mixing between old PGM-rich harzburgitic protoliths and newly-precipitated BMS. Long-lived PGMs carry the Os-isotope compositions of ancient melt‐depletion events into seemingly undepleted fertile lherzolites. Another diagnostic feature of major refertilization processes is the increasing modal abundance of Pt-Pd-Te-Bi or Pt-As-S microphases. Due to regional-scale refertilization processes, sizeable (> 100 km) domains of the upper lithospheric mantle are now significantly enriched in Pd, Au, Cu, Se, and other incompatible chalcophile elements that are of considerable importance in PGE-ore forming events.
ISSN: 0024-4937

hal-00828626
https://hal.archives-ouvertes.fr/hal-00828626
DOI : 10.1016/j.lithos.2012.08.017

Éditeur(s) : HAL CCSD
Résumé : International audience
Mylonite-bearing crustal shear zones are exhumed extensions at depth of (potentially seismogenic) brittle faultsat shallow structural level. By concentrating deformation, shear zones play a major role in the rheology and mechanicalbehavior of the continental crust. Analysis of shear zone geometry and microstructures is a useful toolto decipher deformation kinematics, though finite strain estimation is still relatively qualitative. Timing of thedeformation has also been the focus of numerous studies using the complete spectrum of geochronometers. However,only rare examples provide geochronological data that can be unambiguously linked with deformation. Thus,time-scales over which major mylonite zones develop and remain active under ductile conditions as well as theirstrain rates often remain poorly documented. Several sections across the South Armorican Shear Zone (SASZ),a crustal-scale, several km-thick dextral shear zone were investigated by structural, petrological and Ar/Ar radiochronologicalmethods. Finite strain profiles on these sections showed a strong deformation partitioning towardsthe ultramylonite core of the SASZ, with a decrease, of both the C’/S mean angle (from ca. 45 to less than5) and the Quartz grain-size (from ca. 150 to 5 m). In parallel, conventional and in-situ Ar/Ar datings on thefabric-forming white micas were performed on compositionally complex white-micas. Inherited magmatic muscovitescarried by the foliation and newly-formed, syn-tectonic substituted phengites located along the shear bandsyielded 2 age groups for the less deformed samples. Along the shear zone cross-section, the difference betweenthese two ages evolves from 10-15 Ma in weakly deformed domains to zero toward the SASZ core. In addition, thevery fine-grained syn-tectonic phengites yielded the same ca. 300-298 Ma age irrespectively of their distance to thecore of the shear zone, even in slightly deformed rocks distant by several km. These results support a new modelof crustal-scale shear zone activity, where the whole body of the shear zone is active throughout its history, i.e.the actively deforming zone does not get progressively narrower. The strain distribution nevertheless evolves withtime, with an increasingly larger fraction partitioned in the ultramylonitic core. Besides, combination of the finitestrain estimations and the Ar/Ar ages enables us to assess the range of strain rates associated with mylonitization.
EGU General Assembly 2014
Vienne, Austria

insu-01565057
https://hal-insu.archives-ouvertes.fr/insu-01565057

Éditeur(s) : HAL CCSD
Résumé : International audience
The Kazdağ Massif exposes a metamorphic dome in the Biga Peninsula of northwest Turkey. An extensional origin has been proposed for the dome, limited on both flanks by detachments and/or shear zones. The northern flank is bounded by the extensional Alakeçi Shear Zone (ASZ), whose P-T-t path is still poorly known. We therefore focus on its metamorphic conditions and related temporal history to precise its tectono-metamorphic evolution. The local tectonostratigraphy in structurally ascending order comprises: (i) the high-grade metamorphic core rocks of the Kazdaǧ Massif (gneisses and micaschists intercalated with amphibolites and marbles); (ii) the two kilometer-thick ASZ; (iii) the overlaying unmetamorphosed pre-Cenomanian accretionary Çetmi mélange; and (iv) Neogene sedimentary and volcanic cover rocks. ASZ mylonites were derived from both the core rocks and the mélange lithologies. From the north to the south the mylonitic fabrics in the ASZ depict a top-to-the N-NNE shearing, parallel to the NNE-plunging stretching lineation and NNW-dipping mylonitic foliation. This geometry implies normal sense movement i.e. north-side down-dip extensional displacement along this flank of the Kazdaǧ Massif. The northward transition from ductile to brittle-ductile regime through the ASZ shows that the deformation occurred at decreasing temperatures and degree of metamorphism. The paragenesis in equilibrium within the mylonitic gneisses and schists contains Qtz + Fs + Ms + Bt + Grt ± St ± Sill, with late retrogressive chlorite after biotite and garnet. Four samples of ASZ rocks yielded pressures between 6.9-5.7 kbar and temperatures between 706-587°C. Three samples from the mylonitic rocks supplied in situ isochron 36Ar/40Ar mica ages between 31.2-24.2 Ma, which we interpret to date the cooling of the mylonites following the P-T decrease across the ASZ. The metamorphic and structural results support the extensional character of the ASZ, and sketch transition from sillimanite core gneisses in the deeper structural levels to chlorite schists towards the top of the shear zone. These new data allow to precise the peak P-T conditions and the temporal evolution in the northern flank of the Kazdaǧ Massif, where Late Oligocene extensional exhumation was assisted by NNE-directed ductile-brittle ASZ, which had operated from amphibolite to greenschist facies. At the regional scale, this tectono-metamorphic pattern is similar to those observed on other places of the north Aegean domain.
IOP Conference Series
Austin, TE, United States

hal-00642725
https://hal-brgm.archives-ouvertes.fr/hal-00642725
DOI : 10.1088/1755-1307/2/1/012012

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Genetic diversity is crucial for species' maintenance and persistence, yet is often overlooked in conservation studies. Species diversity is more often reported due to practical constraints, but it is unknown if these measures of diversity are correlated. In marine invertebrates, adults are often sessile or sedentary and populations exchange genes via dispersal of gametes and larvae. Species with a larval period are expected to have more connected populations than those without larval dispersal. We assessed the relationship between measures of species and genetic diversity, and between dispersal ability and connectivity. We compiled data on genetic patterns and life history traits in nine species across five phyla. Sampling sites spanned 600km in the northwest Mediterranean Sea and focused on a 50-km area near Marseilles, France. Comparative population genetic approaches yielded three main results. (i) Species without larvae showed higher levels of genetic structure than species with free-living larvae, but the role of larval type (lecithotrophic or planktotrophic) was negligible. (ii) A narrow area around Marseilles, subject to offshore advection, limited genetic connectivity in most species. (iii) We identified sites with significant positive contributions to overall genetic diversity across all species, corresponding with areas near low human population densities. In contrast, high levels of human activity corresponded with a negative contribution to overall genetic diversity. Genetic diversity within species was positively and significantly linearly related to local species diversity. Our study suggests that local contribution to overall genetic diversity should be taken into account for future conservation strategies.
ISSN: 0962-1083

hal-01681650
https://hal.archives-ouvertes.fr/hal-01681650
DOI : 10.1111/mec.14389

Éditeur(s) : Gauthier-Villars
Résumé : Moored current measurements carried out from 31 March 1990 to 15 September 1991 in two stages at a point (near 6 degrees N) located over the mid-continental slope off French Guiana are presented. Six current meters were positioned between 200 and 2700 m depth. Upper level mean current data showed a northwestward flowing North Brazil Current (NBC) with mean velocity values decreasing from 10 cm/s in the range 200-250 m to almost zero at 800 m depth, the level of the Antarctic Intermediate Waters. In the range 500-800 m, the current reversed in spring in the presence of the southeastward Western Boundary Under Current (WBUC); the mean velocity from February to June 1991 is around 2 cm/s. Deep currents over the continental rise show a strong southeastward Deep Western Boundary Current extending from around 1000 m depth to the bottom (3000 m depth in this case) with mean core speeds of 20 cm/s at 2000-2070 m depth. Transport estimates based on these data and a few Pegasus sections for the mean vertical and lateral extensions of the DWBC yield a value of 21 x 10(6) m(3)/s at that location. Low-frequency current fluctuations were dominated by a well-defined 50- to 70-day period oscillation with peak-to-peak northwestward velocity amplitude of around 90 cm/s at the upper level. The mean vertical eddy kinetic energy distribution showed an abrupt decrease of the energy down to 800 m depth and a slight decrease below and down to the bottom.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 4 , P. 345-354

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00098/20897/18510.pdf
http://archimer.ifremer.fr/doc/00098/20897/

Éditeur(s) : HAL CCSD Geological Society
Résumé : Gem opals from Wegel Tena, Wollo Province, Ethiopia, occur in Oligocene rhyolitic ignimbrites. They display a unique geochemistry, with some samples yielding the highest Ba concentrations ever recorded. They are generally much richer in chemical impurities than opals from other localities. For example, the sum Al+Fe or the sum Na+Mg+Ca+K+Ba are often higher. These geochemical features make them easy to distinguish from other opals worldwide. We observed strong geochemical variations and some good positive correlations in our samples, such as Al+Fe vs. Na+Mg+Ca+K+Ba, Al vs Ca, or Ba vs Ca. This shows that the crystallography of opal has controlled, at least in part, the incorporation of chemical impurities, although opal is not well-crystallized. In addition, the multimodal distributions of several chemical impurities (e.g. U vs Sr, Al vs Ca, Ba vs Ca, etc.) suggest at least two origins of silica: weathering of feldspars and weathering of volcanic glass. In addition, opals from Wegel Tena contain numerous well-preserved microscopic plant fossils. Moreover, their host rock exhibits features typical of pedogenesis (abundant clays, desiccation cracks, and grain size sorting). We propose that the opals at Wegel Tena formed during the Oligocene period when volcanic emissions stopped for a time long enough to allow weathering of ingimbrites and therefore liberation of silica. This accompanied the formation of soil and development of plant life, and some plants were trapped in opal.
ISSN: 1467-7873

hal-00767555
https://hal.archives-ouvertes.fr/hal-00767555
DOI : 10.1144/1467-7873/10-MINDEP-058

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Oisans Massif, located in the external zones of the western Alps, experienced significant shortening during the Alpine collision. While a series of major top-to-the west shear zones was recently described, the general low grade of the metamorphism has not attracted much petrological and geochronological studies. This paper provides combined temperature and age constraints on the evolution of the Oisans Massif. Temperature was estimated with the Raman Spectrometry of Carbonaceous Material (RSCM) method and chlorite geothermometry. Maximum temperature reached by the Mesozoic cover (Tmax) from Grenoble to the Galibier pass (E-W) and from Saint Jean de Maurienne to Embrun (N-S) yielded almost constant ca. 330 °C temperatures all through the Massif. Temperatures however strongly decrease either westward towards the top of the Vercors sedimentary sequence or eastward towards the Penninic Frontal Thrust. Age constraints were retrieved using 40Ar/39Ar in situ analyses performed on variously strained samples from Alpine shear zones. Over strain gradients, incipient Alpine recrystallizations progressively develop at the expense of former Variscan parageneses. A combined textural and EPMA approach permitted to identify newly formed chlorite and phengite that unequivocally grew in response to deformation or to low grade metamorphism. Chlorites recorded temperatures from ca. 350–150 °C during the activity of shear zones. In parallel, 40Ar/39Ar in situ experiments enabled dating deformation using both synkinematic phengites crystallized below the closure temperature of white-micas and former Variscan muscovite whose isotopic system have been, at least partially re-opened. Activity of top-to-the-west shear zones responsible for the shortening and thickening of the Oisans massif thus occurred between 34 and 33 and 25 Ma. Integrating these new age-constraints, Tmax estimates, and published geological data on the Oisans Massif and neighbouring areas allow proposing a new shortening scenario for the external zones. From ca. 34–33 Ma, the Oisans Massif was buried as a rigid block below more internal units and reached a temperature of ca. 330 °C. Shearing progressively localized along a series of top-to-the-W shear zones in the basement until 25 Ma. Deformation then localized along a major thrust at the base of the ECM massif and propagated along the basement-cover interface below the Vercors massif after 16 Ma.
ISSN: 0264-3707

Droits : info:eu-repo/semantics/OpenAccess
insu-01093878
https://hal-insu.archives-ouvertes.fr/insu-01093878
https://hal-insu.archives-ouvertes.fr/insu-01093878/document
https://hal-insu.archives-ouvertes.fr/insu-01093878/file/GEOD1326RA.pdf
DOI : 10.1016/j.jog.2014.09.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Resolving the early diversification of animal lineages has proven difficult, even using genome-scale datasets. Several phylogenomic studies have supported the classical scenario in which sponges (Porifera) are the sister group to all other animals (''Porifera-sister''3 hypothesis), consistent with a single origin of the gut, nerve cells, and muscle cells in the stem lineage of eumetazoans (bilaterians + ctenophores + cnidarians). In contrast, several other studies have recovered an alternative topology in which ctenophores are the sister group to all other animals (including sponges). The ``Ctenophora-sister'' hypothesis implies that eumetazoan-specific traits, such as neurons and muscle cells, either evolved once along the metazoan stem lineage and were then lost in sponges and placozoans or evolved at least twice independently in Ctenophora and in Cnidaria + Bilateria. Here, we report on our reconstruction of deep metazoan relationships using a 1,719-gene dataset with dense taxonomic sampling of non-bilaterian animals that was assembled using a semi-automated procedure, designed to reduce known error sources. Our dataset outperforms previous metazoan gene superalignments in terms of data quality and quantity. Analyses with a best-fitting site-heterogeneous evolutionary model provide strong statistical support for placing sponges as the sister-group to all other metazoans, with ctenophores emerging as the second-earliest branching animal lineage. Only those methodological settings that exacerbated long-branch attraction artifacts yielded Ctenophora-sister. These results show that methodological issues must be carefully addressed to tackle difficult phylogenetic questions and pave the road to a better understanding of how fundamental features of animal body plans have emerged.
ISSN: 0960-9822

hal-01681528
https://hal.archives-ouvertes.fr/hal-01681528
DOI : 10.1016/j.cub.2017.02.031

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In many orogens, high-pressure (HP) metamorphic rocks such as eclogite occur as lenses in quartzofeldspathic gneiss that equilibrated at much lower pressures. The pressure–temperature–time (P–T–t) history of eclogite relative to host gneiss provides information about mechanisms and timescales of exhumation of orogenic crust. The Montagne Noire of the southern Massif Central, France, is an eclogite–bearing gneiss (migmatite) dome located at the orogen-foreland transition of the Variscan belt. Results of our study show that it contains the youngest eclogite in the orogen, similar in age to migmatite and granite that crystallized under low-pressure conditions. P–T conditions for an exceptionally unaltered eclogite from the central Montagne Noire were estimated using a pseudosection supplemented by garnet–clinopyroxene and Zr-in-rutile thermometry. Results indicate peak P∼1.4 GPaP∼1.4 GPa and View the MathML sourceT∼725°C for Mg-rich garnet rim (50 mol% pyrope) + omphacite (36 mol% jadeite) + rutile + quartz. U–Pb geochronology (LA-ICP-MS) of 16 zoned zircon grains yielded ∼360 Ma (4 cores) and ∼315 Ma (12 rims and cores). Rare earth element abundances determined by LA-ICP-MS for dated zircon are consistent with crystallization of ∼315 Ma zircon under garnet-stable, plagioclase-unstable conditions that we interpret to indicate high pressure; in contrast, the ∼360 Ma zircon core corresponds to crystallization under lower pressure plagioclase-stable conditions. Based on garnet zoning and inclusion suites, rutile textures and Zr zoning, P–T results, and zircon petrochronology, we interpret the ∼315 Ma date as the age of eclogite-facies metamorphism that only slightly preceded dome formation and crystallization at 315–300 Ma. This age relation indicates that eclogite formation at high pressure and migmatite dome emplacement at low pressure were closely spaced in time. We propose that collapse-driven material transfer from the hot orogen to the cool foreland resulted in thickening of the orogen edge, leading to eclogite facies metamorphism of the deep crust. Soon after, the low-viscosity partially molten crust flowed from the plateau toward the foreland, incorporating and exhuming eclogite. The P–T–t history of the Montagne Noire eclogite shows that some dome material ascended from >40 km depth to shallow crustal levels, likely in a single decompression event, and that migmatite domes are therefore very efficient at exhuming the deep crust.
ISSN: 0012-821X

hal-01243499
https://hal.archives-ouvertes.fr/hal-01243499
DOI : 10.1016/j.epsl.2015.08.026

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The outstanding exposure of deformation bands in a multilayer sequence of the Orange quarry, Provence, France, motivates a study investigating the development and controls of deformation band geometries by field mapping combined with finite element modeling. Field mapping yields new insights into angular relations between, and evolution of, the deformation bands as well as provides input parameters for the setup and boundary conditions of the numerical simulations using ADELI 2D. In particular, reverse-sense deformation bands are found to have developed within three of the four exposed layers of the multilayer stack with similar orientations to bedding, indicating layer-parallel contraction. Numerical simulations, carried out as a parametric study to investigate the influence on deformation band development and geometry, successfully reproduce the sequential development of deformation bands in the three layers as seen in the field as well as recreate the observed angular geometries of similar to 39 degrees to the maximum compression. This angular relationship is put into context with observations from other field studies and theoretical values to explore controls of deformation band orientations. Furthermore, band localization is impeded in the model by increased layer cohesive strength, demonstrating the importance of host-rock property variations on where localization of bands within the multilayer sequence. Results from both field investigation and numerical simulations are consistent with regional tectonics, where the strata underwent gentle folding due to thrust faulting at depth, and bring further insight into the development and geometry of deformation bands in both extensional and contractional tectonic regimes.
ISSN: 0148-0227

hal-00639452
https://hal.archives-ouvertes.fr/hal-00639452
DOI : 10.1029/2011JB008365

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Leishmania parasites can escape the immune response by invading cell types lacking leishmanicidal mechanisms. Silent persistence of Leishmania parasites in the host organism is responsible for asymptomatic carriage and relapses after cured leishmaniasis. Here, we studied the interaction between Hepatic Stellate Cells (HSC) and Leishmania. An original model of human HSC in primary culture infected with L. donovani was developed. The presence of intracellular parasites was studied and quantified using optical and confocal microscopy. HSC characteristics were studied using microscopy, methylene blue assay, long-term cultures and qPCR. We showed for the first time that human HSC are permissive to L. donovani infection, with no modification of HSC survival, growth rate and proinflammatory and fibrogenic characteristics. Intracellular parasites did not replicate but HSC had no effect on their survival. Indeed, after a 40-day culture, infected HSC cultures transferred on NNN medium yielded new promastigotes that were able to proliferate and efficiently infect new cells. HSC are permissive to L. donovani, with neither parasite killing nor apparent cell damage. Thus, HSC could act as potent sanctuary cells for Leishmania in the liver, which could partially explain parasite reactivation after an asymptomatic carriage or a cured visceral leishmaniasis.
ISSN: 0031-1820

inserm-00825803
http://www.hal.inserm.fr/inserm-00825803
DOI : 10.1017/S0031182012001965
PUBMED : 23253952

Éditeur(s) : Springer
Résumé : While it is well known that the ocean is one of the most important component of the climate system, with a heat capacity 1,100 times greater than the atmosphere, the ocean is also the primary reservoir for freshwater transport to the atmosphere and largest component of the global water cycle. Two new satellite sensors, the ESA Soil Moisture and Ocean Salinity (SMOS) and the NASA Aquarius SAC-D missions, are now providing the first space-borne measurements of the sea surface salinity (SSS). In this paper, we present examples demonstrating how SMOS-derived SSS data are being used to better characterize key land–ocean and atmosphere–ocean interaction processes that occur within the marine hydrological cycle. In particular, SMOS with its ocean mapping capability provides observations across the world’s largest tropical ocean fresh pool regions, and we discuss from intraseasonal to interannual precipitation impacts as well as large-scale river runoff from the Amazon–Orinoco and Congo rivers and its offshore advection. Synergistic multi-satellite analyses of these new surface salinity data sets combined with sea surface temperature, dynamical height and currents from altimetry, surface wind, ocean color, rainfall estimates, and in situ observations are shown to yield new freshwater budget insight. Finally, SSS observations from the SMOS and Aquarius/SAC-D sensors are combined to examine the response of the upper ocean to tropical cyclone passage including the potential role that a freshwater-induced upper ocean barrier layer may play in modulating surface cooling and enthalpy flux in tropical cyclone track regions.
Surveys In Geophysics (0169-3298) (Springer), 2014-05 , Vol. 35 , N. 3 , P. 681-722

Droits : Springer Science+Business Media Dordrecht 2013
http://archimer.ifremer.fr/doc/00152/26334/24430.pdf
DOI:10.1007/s10712-013-9244-0
http://archimer.ifremer.fr/doc/00152/26334/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Madeira Sn-Nb-Ta deposit corresponds to the albite-enriched facies of Madeira granite (Madeira Suite) that is part of a NE-SW alignment of three granitic bodies. Structural analyses suggest that the albite-enriched granite emplacement and development of related structures occurred in a different tectonic setting than earlier facies of the granitic bodies in the NE-SW alignment and that the structure was dominated by a N-NE-trending shortening related to a left-lateral motion along a NE-SW corridor within a Riedel shear. Three types of structures (flat-lying, near vertical fractures, and geodes/miaroles) concentrated the last magmatic-related fluid in the albite-enriched granite. U-Pb in situ zircon dating of the albite-enriched granite yielded an age of 1,822 ± 22 Ma. The other granitic plutons of the Madeira Suite, Água Boa granite (topaz-granite facies), and Europa per-alkaline granite formed at 1,825 ± 14 Ma, 1,831± 11 Ma, and 1,839 ± 10 Ma, respectively. The granite bodies of the Madeira Suite occur in an area occupied by a cauldron complex composed of volcanic sequences (Iricoumé Group) and associated A-type granites (Mapuera Suite), and their formation was controlled by the reactivation of the cauldron structures and the pre-existing structures. The gap between the cauldron complex and the Madeira Suite is no greater than 35 Ma. The geological evolution was reanalyzed from the perspective of an entire extensional environment where three successive episodes of A-type magmatism and basin formation (Urupi Formation) occurred. The data and interpretations of this work imply crucial constraints on the petrologic models proposed for the albite-enriched granite and, consequently, on the genesis of the Madeira deposit
ISSN: 0301-9268

insu-00939888
https://hal-insu.archives-ouvertes.fr/insu-00939888
https://hal-insu.archives-ouvertes.fr/insu-00939888/document
https://hal-insu.archives-ouvertes.fr/insu-00939888/file/BastosNeto-PrecambrianResearch-2014.pdf
DOI : 10.1016/j.precamres.2013.12.021