Éditeur(s) : HAL CCSD eLife Sciences Publication
Résumé : International audience
Larval recruitment, the transition of pelagic larvae into reef-associated juveniles, is a critical step for the resilience of marine fish populations but its molecular control is unknown. Here, we investigate whether thyroid-hormones (TH) and their receptors (TR) coordinate the larval recruitment of the coral-reef-fish Acanthurus triostegus. We demonstrate an increase of TH-levels and TR-expressions in pelagic-larvae, followed by a decrease in recruiting juveniles. We generalize these observations in four other coral reef-fish species. Treatments with TH or TR-antagonist, as well as relocation to the open-ocean, disturb A. triostegus larvae transformation and grazing activity. Likewise, chlorpyrifos, a pesticide often encountered in coral-reefs, impairs A. triostegus TH-levels, transformation, and grazing activity, hence diminishing this herbivore’s ability to control the spread of reef-algae. Larval recruitment therefore corresponds to a TH-controlled metamorphosis, sensitive to endocrine disruption. This provides a framework to understand how larval recruitment, critical to reef-ecosystems maintenance, is altered by anthropogenic stressors.
ISSN: 2050-084X

Droits : http://creativecommons.org/licenses/by/
hal-01633712
http://hal.upmc.fr/hal-01633712
http://hal.upmc.fr/hal-01633712/document
http://hal.upmc.fr/hal-01633712/file/elife-27595-v1.pdf
DOI : 10.7554/eLife.27595

Éditeur(s) : EDP Sciences
Résumé : The diversity of reef ecosystems, the multiplicity of reef resource uses and the breadth of the range of the island socio-cultural contexts concerned make coral reef fisheries (CRF) management in the South Pacific a complex task. The health and state of the targeted resources depend both on ecosystem characteristics (as determined by ecological and biological factors) and on fishing pressure, whose effects are only partly known. Increasing harvests from commercial and recreational fishing increasingly overlap with traditional Subsistence activity, creating an important CRF management challenge. This paper presents a new approach to CRF assessment and monitoring by providing a set of multidisciplinary indicators. The fisheries system is assessed from three different viewpoints: ecology of targeted populations, exploitation and the broader socio-econornic fishery context. The use of complementary indicators chosen from each of these fields could balance the chronic lack of human and financial resources for the management of these fisheries. We suggest the use of these indicators through an assessment grid or an indicator dashboard specifically adapted to given situations and management objectives determined through a participatory approach. The operational efficiency of this dashboard depends on i) dialogue between users, ii) the objectivity of the proposed monitoring, iii) the Visual transcription of divergent/convergent interests amongst stakeholders, and iv) stakeholder involvement in the decision-making process. The use and constraints of such a tool are described with reference to Ouvea atoll (New-Caledonia, South Pacific) for which an analysis of available indicators for assessing fisheries status is presented.
La diversité des écosystèmes coralliens, la multiplicité des modalités d'exploitation de leurs ressources et l'hétérogénéité des contextes socio-culturels insulaires rendent complexe la gestion des pêcheries récifo-lagonaires du Pacifique sud. La santé et l'évolution de ces ressources dépendent, d'une part, des caractéristiques propres de l'écosystème (obéissant à des facteurs biologiques et écologiques) et, d'autre part, de la pression de pêche dont certains effets seulement sont établis. La pêche traditionnelle aux fins de subsistance est aujourd'hui concurrencée par des activités à visées commerciales et récréatives, qui accroissent les prélèvements et soulèvent de nouveaux enjeux de gestion. L'article propose une approche pour l'évaluation et le suivi de ces pêcheries basée sur un ensemble d'indicateurs pluridisciplinaires. Le système « Pêche » est analysé de trois points de vue complémentaires : l'écologie des peuplements exploités, l'exploitation halieutique sensu stricto et le contexte économique et social plus large des pêcheries. La mise en place d'indicateurs issus de ces trois domaines vise à compenser le manque chronique de moyens financiers et humains pour la gestion des pêcheries coralliennes des îles du Pacifique sud. Nous suggérons que leur utilisation s'effectue au travers d'une grille d'évaluation ou tableau de bord répondant à des situations précises et des objectifs de gestion définis lors d'une approche participative. La portée opérationnelle de ce tableau de bord de gestion de la pêche repose sur i) la concertation engagée entre les usagers, ii) l'objectivité du suivi préconisé, iii) la transcription visuelle des intérêts convergents et/ou divergents des acteurs, et iv) leur implication dans le processus de décision. Les modalités et contraintes d'application de cet outil sont décrites sur l'exemple de l'atoll d'Ouvéa (Nouvelle-Calédonie, Pacifique Sud), pour lequel une analyse des indicateurs disponibles pour décrire l'état des pêcheries a été réalisée.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005-07 , Vol. 18 , N. 3 , P. 199-213

Droits : 2005 EDP Sciences, IFREMER, IRD
http://archimer.ifremer.fr/doc/2005/publication-716.pdf
DOI:10.1051/alr:2005026
http://archimer.ifremer.fr/doc/00000/716/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : In this study, we propose to analyze the limits of mass tourism in the French Antilles, specifically the decline of tourism, economic limits, and ecological degradation). The recognition of these limits is overdue, and signals a need to define another model for tourism development.The popular coastal sector in the south of Martinique has been subject new regulations to protect marine resources. These regulations require the development of new practices and a greater level of awareness for tourists, for example, around coral reefs and mangroves. Ecotourism programs aim to demonstrate to visitors the forests rich natural resources and biodiversity in general. It also features the inclusion of small rural businesses that benefit from additional sources of revenue as a result of ecotourism.The situation in the French Antilles is complex: Urbanization is fraught with serious consequences for the coastline. Tourism products currently being marketed on the island are not competitive (particularly against the political dynamics of the neighbouring island of Dominica). Ecotourism and sustainable tourism are just beginning to develop in such destinations, where tourism has been declining in the last ten years. The situation of the French Antilles is paradoxical in a region that generally has a very favourable tourism. Assessing these limits through the scope of ecotourism helps to highlight the causes of these difficulties and to adapting to new tourism practices.
Dans le cadre de cette étude, l’accent est mis sur les limites du tourisme de masse dans les Antilles françaises (dépréciation du tourisme, les contraintes économiques et les nuisances écologiques). La reconnaissance de ces limites est à l'origine de la prise de conscience tardive de la nécessité de définir un autre modèle de développement touristique.Dans le sud de la Martinique, le secteur le plus populaire du littoral, de nouvelles règlementations sont mises en place pour protéger les ressources marines. Cela nécessite le développement de nouvelles pratiques et de sensibilisation des touristes notamment autour des récifs coralliens et les mangroves. Les programmes autour de l'écotourisme visent également à montrer aux visiteurs la richesse des ressources forestières et de la biodiversité en général. Il comprend également les petites entreprises rurales qui reçoivent de nouveaux revenus grâce au tourisme.La situation est complexe dans les Antilles françaises: l'urbanisation est lourde de conséquences importantes sur la côte. Les produits touristiques commercialisés actuellement ne sont pas compétitifs (notamment contre la dynamique politique de l'île voisine de la Dominique). L'écotourisme et le tourisme durable commencent tout juste à se développer dans ces destinations où le tourisme classique est en difficulté depuis une dizaine d’années ; situation assez paradoxale au regard du dynamisme de ce secteur d’activité dans la région.
En el contexto de este estudio, nos proponemos analizar los límites del turismo de masas en las Antillas Francesas (depreciación del turismo, las limitaciones económicas, ecológicas y las molestias). Este reconocimiento de esos límites está en el origen de la conciencia tardía de la necesidad de definir otro modelo de desarrollo turístico.En el sector costero de la más popular, como en el sur de Martinica, se pone en la normativa nuevo lugar para proteger los recursos marinos. Esto requiere el desarrollo de nuevas prácticas y la sensibilización de los turistas, por ejemplo, alrededor de los arrecifes de coral y los manglares.Programas en torno al ecoturismo también tienen como objetivo dar al visitante la riqueza de los recursos forestales y la biodiversidad en general. También incluye las pequeñas empresas rurales que reciben los nuevos ingresos a través del turismo.Pero la situación es compleja en las Antillas francesas: la urbanización está llena de importantes consecuencias para la costa. Productos turísticos que se comercializan actualmente no son competitivos (en particular, contra la dinámica política de la cercana isla de Dominica). Ecoturismo y desarrollo sostenible están empezando a desarrollar en este destino turístico, donde el turismo está en problemas en los últimos diez años.Esta situación es bastante paradójico en un turismo regional muy favorable. Sin lugar a dudas, pensando en el ecoturismo contribuye a identificar los destinos de estos retrasos y dificultades para adaptarse a nuevas prácticas de turismo.
Martinique

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5262
http://journals.openedition.org/etudescaribeennes/5262

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
High 3He/4He ratios in some basalts have generally been interpreted as originating in an incompletely degassed lower-mantle source1, 2, 3, 4, 5, 6, 7, 8, 9. This helium source may have been isolated at the core-mantle boundary region since Earth's accretion4, 5, 6. Alternatively, it may have taken part in whole-mantle convection and crust production over the age of the Earth7, 8, 9; if so, it is now either a primitive refugium at the core-mantle boundary8 or is distributed throughout the lower mantle7, 9. Here we constrain the problem using lavas from Baffin Island, West Greenland, the Ontong Java Plateau, Isla Gorgona and Fernandina (Galapagos). Olivine phenocryst compositions show that these lavas originated from a peridotite source that was about 20 per cent higher in nickel content than in the modern mid-ocean-ridge basalt source. Where data are available, these lavas also have high 3He/4He. We propose that a less-degassed nickel-rich source formed by core-mantle interaction during the crystallization of a melt-rich layer or basal magma ocean5, 6, and that this source continues to be sampled by mantle plumes. The spatial distribution of this source may be constrained by nickel partitioning experiments at the pressures of the core-mantle boundary.
ISSN: 0028-0836

hal-00941025
https://hal.archives-ouvertes.fr/hal-00941025
DOI : 10.1038/nature11771

Éditeur(s) : HAL CCSD Luís Felipe Toledo
Résumé : International audience
Expedition Pakaihi I Te Moana was conducted in 2011 to the Marquesas Islands, lying between 07°50ʹ S and 10°35ʹ S latitude and 138°25ʹ W and 140°50ʹ W longitude. The expedition combined extensive collections and visual censuses of the shore fish fauna. A total of 74 species are added as new records for the Marquesas Islands; the coastal fish fauna of the Marquesas Islands is increased from 415 to 495 species and the number of endemic species is increased from 48 to 68 species. This increases the percentage of species-level endemism for the Marquesas Islands to 13.7%, ranking as the third highest region of endemism for coral reef fishes in the Indo-Pacific. Only two other peripheral regions, the Hawai'ian Islands and Easter Island, have higher values.
ISSN: 1809-127X

Droits : http://creativecommons.org/licenses/by-nc-nd/
hal-01223491
https://hal-univ-perp.archives-ouvertes.fr/hal-01223491
https://hal-univ-perp.archives-ouvertes.fr/hal-01223491/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01223491/file/12228-51386-1-PB.pdf
DOI : 10.15560/11.5.1758

Résumé : The MEDECO Leg 2 cruise followed the MEDECO Leg 1 cruise that had crossed the Mediterranean Sea from the west to the east to study benthic communities of the Var canyon, deep corals found on the Calabrian Margin and cold seep ecosystems of the Mediterranean Ridge. The main objective of the MEDECO Leg 2 cruise was to study and compare, using a multidisciplinary approach, the structure and dynamics of deep-sea ecosystems at various active cold seep sites from the Nile deep sea fan and the Calabrian Arc, in the Eastern Mediterranean sea. During MEDECO Legs 1 & 2, a multiscale strategy was promoted to integrate (1) a high resolution cartography of geological structures (km2 scale), (2) a detailed mapping, including video imagery, of smaller-scale areas (scale 100 to 300 m2), (3) the physical, chemical and sedimentary characteristics of the habitat (multiscale), (4) the structure and functioning of faunal communities, including microbes, in terms of composition, diversity and biomass (multiscale), (5) small scale studies of interactions between organisms and their environment (scale < m2), (6) detailed ecophysiological studies at the organism scale on invertebrates. The use of the ROV “Victor 6000” and of various equipments for in situ and ex situ observations and measurements has helped reaching our objectives. The MEDECO cruise represented the key-Mediterranean cruise of the HERMES project “Hotspot Ecosystem Research on the Margins of European Seas” (P.I. P. Weaver, NOC-Southampton). The cruise was organized to follow the objectives of the HERMES program to better understand the functioning of deep ecosystems of the continental margins aiming at obtaining: (1) the description and quantification of the natural drivers (geological, hydrological, chemical factors) that control the distribution of ecosystems on margins; (2) the characterization and quantification of biodiversity, from bacteria to megafauna, as well as the knowledge of ecosystem functioning; (3) the study of ecosystems dynamics including the biology/physiology of key-species. Specific objectives. Colonization experiments conducted in the frame of two European programs, Diwoo and Chemeco, have given the opportunity to recover the fauna installed in the devices deployed during the Bionil cruise (2006) and to deploy new ones at the same site located in the pockmark area of the central province of Nile deep sea fan.

Droits : 2008 Insu, Cnrs, Locean
http://archimer.ifremer.fr/doc/00134/24550/22583.pdf
http://archimer.ifremer.fr/doc/00134/24550/

Éditeur(s) : HAL CCSD Elsevier
Résumé : The relationship between deformation and so-called fluid paleotransfers in minor faults has been analysed in an argillaceous formation located in the Causses Basin in France. The fluid paleotransfers are related to the fault activity to a large extent. We attempt to estimate the intensity of paleo-deviatoric stress magnitudes under which the fault activity may have occurred and consequently, the change in the structural fault permeability. The paleo-deviatoric stress magnitudes were calculated with the inverse method of Etchecopar applied to calcite twinning. The measured crystals are contained within the core zone of minor faults and this study is based on a previous complete microtectonic and microstructural analysis of the faults. In this paper, analysis of calcite twinning has been applied for the first time to vein fillings associated small faults in a context of relatively weak deformation, a condition ensured by the tectonic and structural analysis. Calculation and discussion of the paleo-deviatoric stress tensors in relation to the evolution of the structural fault permeability and to the hydraulic behaviour of the faults are the aim of this paper. The analysed faults, created and active during the same tectonic event, were permeable under a (;σ;1;–;σ;3;) mean value of 40–50 MPa. On the other hand, the reactivation of faults during a second tectonic event implies mean (;σ;1;–;σ;3;) value higher than 40–50 MPa, especially for the faults that are poorly oriented with respect to the principal tectonic stress directions. The core zone of these faults remained sealed and impermeable or became permeable by development of microcracks inside the pre-existing fillings.
ISSN: 0040-1951

hal-00407577
https://hal.archives-ouvertes.fr/hal-00407577
DOI : 10.1016/j.tecto.2006.09.014

Éditeur(s) : HAL CCSD United Nations, Division for Ocean Affairs and the Law of the Sea
Résumé : International audience
First Global Integrated Marine Assessment (First World Ocean Assessment)

hal-01299315
https://hal-univ-perp.archives-ouvertes.fr/hal-01299315

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
ISSN: 2072-4292

hal-01429052
https://hal.archives-ouvertes.fr/hal-01429052
DOI : 10.3390/rs4103244

Éditeur(s) : CNEXO
Résumé : The analysis of cores taken during the drilling operation of the Terebel's cruise in the northwestern Mediterranean Sea has put into evidence some reworked sediments. However, the occurence of Gtobigerina pachyderma, Gtoborotatia truncatutinoides and Hyalinea balthica gives a quaternary age to these deposits (not older than Sicilian). The microfauna variations in some cores are related to paleoclimatological changes. Some of the sedimentary levels were deposited during a warming interglacial period. [NOT CONTROLLED OCR]
Résultats des Campagnes à la Mer (CNEXO), 1971 , Vol. 2 , N. 107 , P. 313-321

Droits : CNEXO
http://archimer.ifremer.fr/doc/1971/publication-4904.pdf
http://archimer.ifremer.fr/doc/00000/4904/

Éditeur(s) : HAL CCSD Elsevier
Résumé : Finding records of past catastrophic storm events is essential to evaluate the long term climatic evolution in a given coastal area. This question has been addressed by the study of sediment cores sampled in a small coastal lagoon of the French Mediterranean coast (Pierre Blanche lagoon). Two cores were studied in detail and revealed the presence of three main storm events. The sedimentation rates calculated using the CFCS Pb-210 model, in agreement with Cs-137 data, are 3 +/- 0.4 and 4.2 +/- 0.7 mm y(-1) near the border and in the center of the lagoon respectively. This suggests that the 0.6 m deep lagoon could be filled with sediments over the next 150 yr. Our study shows that storm events can be characterized in sedimentary sequences identified by facies, grain size and faunal assemblages (lagoonal and marine species). Comparison of Pb-210, C-14 chronology and historical accounts suggest that the three identified storm events took place in 1742, 1839 and 1893 A.D. (i.e. about one catastrophic event per century).
ISSN: 0025-3227

hal-00411189
https://hal.archives-ouvertes.fr/hal-00411189
DOI : 10.1016/j.margeo.2008.03.001

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Crustose coralline algae (CCA) are major benthic calcifiers that play crucial roles in marine ecosystems, particularly coral reefs. Over the past two decades, epizootics have been reported for several CCA species on coral reefs worldwide. However, their causes remain often unknown in part because few studies have investigated CCA pathologies at a microscopic scale. We studied the cellular changes associated with two syndromes: Coralline White Band Syndrome (CWBS) and Coralline White Patch Disease (CWPD) from samples collected in Curaçao , southern Caribbean. Healthy-looking tissue of diseased CCA did not differ from healthy tissue of healthy CCA. In diseased tissues of both pathologies, the three characteristic cell layers of CCA revealed cells completely depleted of protoplasmic content, but presenting an intact cell wall. In addition, CWBS showed a transition area between healthy and diseased tissues consisting of cells partially deprived of protoplasmic material, most likely corresponding to the white band characterizing the disease at the macroscopic level. This transition area was absent in CWPD. Regrowth at the lesion boundary were sometimes observed in both syndromes. Tissues of both healthy and diseased CCA were colonised by diverse boring organisms. Fungal infections associated with the diseased cells were not seen. However, other bioeroders were more abundant in diseased vs healthy CCA and in diseased vs healthy-looking tissues of diseased CCA. Although their role in the pathogenesis is unclear, this suggests that disease increases CCA susceptibility to bioerosion. Further investigations using an integrated approach are needed to carry out the complete diagnosis of these diseases.
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01174251
https://hal-univ-perp.archives-ouvertes.fr/hal-01174251
https://hal-univ-perp.archives-ouvertes.fr/hal-01174251/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01174251/file/peerj-1034.pdf
DOI : 10.7717/peerj.1034

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Most kimberlites contain abundant dunitic nodules. These are centimetre-sized, rounded and multi-grained assemblages of xenocrystic olivine with a wide range of compositions (Fo83 to Fo94). The absence of orthopyroxene and other mantle minerals and the range of olivine compositions have been attributed to reaction between mantle peridotite and (proto)kimberlitic fluid or melt, but the timing of the reaction is a subject of debate. In a kimberlite from the Kangamiut region of Greenland, nodule cores are surrounded by fine-grained outer margins with near-constant Fo contents (∼Fo88) but highly variable minor element contents (e.g. 500–2500 ppm Ni). These margins crystallized from the kimberlite melt and we show that their compositions can be explained by crystallization of olivine alone, if a high partition coefficient for Ni between melt and olivine (DNi > 20) is assumed. Orthopyroxene assimilation is not required, removing the constraint that its dissolution occurred during ascent of the kimberlite magma. Within some nodules, in addition to the usual core-to-margin gradients, we observe asymmetric compositional changes (variable Fo but near-constant minor element contents) across mobile grain boundaries. These changes document fluid percolation at the grain scale that occurred during dynamic recrystallization in the deforming lithospheric mantle. We note that chemical gradients associated with mobile grain boundaries are observed in olivines that cover the entire compositional range of the nodules, and propose that fluid-assisted dynamic recrystallization took place in dunite that was already compositionally heterogeneous. Reaction between peridotite and protokimberlitic melt or fluid and dissolution of orthopyroxene thus occurred within the lithospheric mantle, immediately (a few days) prior to the ascent of the kimberlite melt and the entrainment of the dunite nodules. We propose that the grain boundary zones probably mimic, at a fine scale, the fluid–peridotite interaction that caused, at a larger scale, orthopyroxene dissolution and formation of compositionally diverse olivine in kimberlites.
ISSN: 0022-3530

hal-01277963
https://hal.archives-ouvertes.fr/hal-01277963
DOI : 10.1093/petrology/egv054

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Jacupiranga Complex is one of several Meso-Cenozoic alkaline intrusive complexes along the margins of the intracratonic Paraná Basin in southern Brazil. The complex encompasses a wide range of rock-types, including dunites, wehrlites, clinopyroxenites, melteigites-ijolites, feldspar-bearing rocks (diorites, syenites, and monzonites), lamprophyres and apatite-rich carbonatites. While carbonatites have been extensively investigated over the last decades, little attention has been paid to the silicate rocks. This study presents new geochonological and geochemical data on the Jacupiranga Complex, with particular emphasis on the silicate lithotypes. 40Ar/39Ar ages for different lithotypes range from 133.7 ± 0.5 Ma to 131.4 ± 0.5 Ma, while monzonite zircon analyzed by SHRIMP yields a U-Pb concordia age of 134.9 ± 1.3 Ma. These ages indicate a narrow time frame for the Jacupiranga Complex emplacement, contemporaneous with the Paraná Magmatic Province. Most of the Jacupiranga rocks are SiO2-undersaturated, except for a quartz-normative monzonite. Based on geochemical compositions, the Jacupiranga silicate lithotypes may be separated into two magma-evolution trends: (1) a strongly silica-undersaturated series, comprising part of the clinopyroxenites and the ijolitic rocks, probably related to nephelinite melts and (2) a mildly silica-undersaturated series, related to basanite parental magmas and comprising the feldspar-bearing rocks, phonolites, lamprophyres, and part of the clinopyroxenites. Dunites and wehrlites are characterized by olivine compositionally restricted to the Fo83-84 interval and concentrations of CaO (0.13–0.54 wt%) and NiO (0.19–0.33 wt%) consistent with derivation by fractional crystallization, although it is not clear whether these rocks belong to the nephelinite or basanite series. Lamprophyre dikes within the complex are considered as good representatives of the basanite parental magma. Compositions of calculated melts in equilibrium with diopside cores from clinopyroxenites are quite similar to those of the lamprophyres, suggesting that at least a part of the clinopyroxenites is related to the basanite series. Some feldspar-bearing rocks (i.e. meladiorite and monzonite) show petrographic features and geochemical and isotope compositions indicative of crustal assimilation, although this may be relegated to a local process. Relatively high CaO/Al2O3 and La/Zr and low Ti/Eu ratios from the lamprophyres and calculated melts in equilibrium with cumulus clinopyroxene point to a lithospheric mantle metasomatized by CO2-rich fluids, suggesting vein-plus-wall-rock melting mechanisms. The chemical differences among those liquids are thought to reflect both variable contributions of melting resulting from veins and variable clinopyroxene/garnet proportions of the source.
ISSN: 0895-9811

hal-01583547
https://hal.archives-ouvertes.fr/hal-01583547
DOI : 10.1016/j.jsames.2017.05.009

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Ecological signs of Earth's biosphere forewarn an alarming trajectory towards a global mass-extinction. Assessing species performance and susceptibilities to decline is essential to comprehend and reverse this trend. Yet it is challenging, given difficulties associated with quantifying individual and population processes that are variable across time, space, and life-stages. We describe a new approach to estimating and comparing species performances that combines empirical data, a novel theoretical consideration of population dynamics, and modern statistics. Our approach allows for a more realistic continuous representation of individual performances along development stages while taking into account non-linearity, and natural variability as captured by spatio-temporally replicated observations. We illustrate its application in a coral meta-assemblage composed of populations of the three major reef-building taxa Acropora, Pocillopora, Porites. Using a unique set of highly replicated observations of individual coral dynamics under various environmental conditions, we show how taxa differ in their investment in recruitment and size-specific aptitude for growth and survival, notably through different use of clonal shrinkage, fragmentation, fission, and fusion processes. Our results reveal contrasting life-history trade-offs among taxa which, along with differing patterns of density-dependent recruitment, modulate species responses to decline. These differences in coral life history traits reflect opposing life-strategies, imply regulation at differing life-stages, and explain divergence in species trajectories. Our findings indicate a high potential for resilience in Pocillopora and Porites populations, thanks respectively to a sustained recruitment that promotes demographic elasticity through replacement of individuals, and a steady resistance to mortality which confers persistence through lingering of individuals. Resilience in Acropora appears more arbitrary, given high susceptibility to perturbations and dependency of recruitment on presence of established local populations. We identify management actions that can complement Acropora's life history and benefit recovery of its populations following mortality events. Our regression-modelling approach to quantifying and comparing species performances in different population processes is applicable to all taxa, as illustrated even those with complex clonal life histories, and can be implemented at wide spatio-temporal and taxonomic coverage. It can promote more accurate representation of species dynamics in both descriptive and predictive modelling approaches. The semi-parametric contrast curve method we develop facilitates comparing response variables along continuous explicative metrics while accounting for multiple sources of complexity in empirical data. It should widely benefit investigations in ecology and quantitative science.
ISSN: 1476-945X

hal-01212337
https://hal-univ-perp.archives-ouvertes.fr/hal-01212337
DOI : 10.1016/j.ecocom.2015.07.003

Éditeur(s) : HAL CCSD The Royal Society of Chemistry
Résumé : International audience
This review is devoted to the description of synthetic strategies for glycodendrimers synthesis. Dendrimers can be classified into three categories: carbohydrate-coated, carbohydrate-centered and carbohydrate-based dendrimer. In this paper we will focus on the third one, in which the core unit is originated from a monosaccharide. Compare to classical Pamam, Boltorn cores, carbohydrate units add much more three dimension information, coded in the chirality in almost each carbon. Various coupling chemistry have been developed and are presented here: glycosylation, amide bound formation, and click chemistry (thiol-ene reaction, epoxide - thiol reaction).
Carbohydrate Chemistry: Volume 40

ISBN : 978-1-84973-965-8
hal-01362709
https://hal.archives-ouvertes.fr/hal-01362709
DOI : 10.1039/9781849739986-00257

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Trace metals (Cd, U, Co, Ni, Cu, Ba, Fe, Mn), total organic carbon (TOC) and C and N stable isotope signatures (delta C-313 and delta N-15) were determined in short sediments cores from the inner and outer shelf off Concepcion, Chile (similar to 36 degrees S). The objectives were to establish the effect of environmental conditions on trace metal distributions at two shelf sites, one affected by seasonal oxygenation and the other by permanent low oxygen conditions due to the presence of the oxygen minimum zone (OMZ). We evaluate trace metals as proxies of past changes in primary productivity and the bottom water oxygen regime. Concentrations of pore water sulfides and NH4+ were also measured as indicators of the main diagenetic pathways at each site. Our results for the inner shelf (seasonal suboxia) suggest that the oxidative state of the sediments responds to seasonal pulses of organic matter and that seasonal oxygenation develops during high and low primary productivity in the water column. Here, positive fluxes (to the water column) estimated from pore water concentrations of several elements were observed (Ba, Co, Ni, Fe and Mn). The less reduced environment at this site produces authigenic enrichment of Cu associated with the formation of oxides in the oxic surface sediment layer, and the reduction of U within deeper sediment sections occur consistently with negative estimated pore water fluxes. In the outer shelf sediments (permanent suboxia, OMZ site), negative fluxes (to the sediment) were estimated for all elements, but these sediments showed authigenic enrichments only for Cd, Cu and U. The short oxygenation period during the winter season did not affect the accumulation of these metals on the shelf. The distribution of Cu, Cd and U have been preserved within the sediments and the authigenic accumulation rates estimated showed a decrease from the deep sections of the core to the surface sediments. This could be explained by a gradual decrease in the strength of the OMZ in the last 100 years, in combination with periods of strong oxygenations during El Nino events. (C) 2011 Elsevier Ltd. All rights reserved.
ISSN: 0278-4343

hal-00745672
https://hal.archives-ouvertes.fr/hal-00745672
DOI : 10.1016/j.csr.2011.11.006

Éditeur(s) : HAL CCSD SAGE Publications
Résumé : International audience
A multiproxy analysis of lacustrine sediments cored in Grand-Case Pond at Saint-Martin, north of the Lesser Antilles archipelago, reveals three distinct climatic periods for the last 3700 years. From 3700 to ~2500 yr cal. BP and from 1150 yr cal. BP to the present, carbonate mud deposition occurred in connection with pond lowstands. These periods were also punctuated by severe drought events, marked by gypsum laminae, and hurricane landfalls, leading to marine sand inputs into the pond. The intermediate time interval, from 2500 to 1150 yr cal. BP, is typified by black organic mud deposition, suggesting that hypoxic to anoxic conditions prevailed at the pond bottom. These were probably linked with a perennial pond highstand and reflect more uniform and wetter climatic conditions than today. The carbon isotopic composition of the ostracod Perissocytheridea bisulcata shows that the lowest δ13C values are recorded during the hypoxic periods, as a consequence of bacterial recycling of isotopically depleted organic matter. Such a climatic history agrees closely with that documented from other records in the Caribbean area, such as the Cariaco Basin, central coast of Belize or Barbados. By constrast, discrepancies seem to emerge from the comparison between hurricane activity recorded at Saint-Martin on the one hand and Vieques (Puerto Rico) on the other hand. We explain this apparent contradiction by a balance between two distinct storm paths in response to latitudinal shifts of the Intertropical Convergence Zone (ITCZ). Stronger storm activity over the Gulf coast and the inner Caribbean Sea is favoured by a southern position of the ITCZ in connection with dry climatic conditions. Plausible links with the North Atlantic Oscillation (NAO) are also suggested.
ISSN: 0959-6836

halshs-00758748
https://halshs.archives-ouvertes.fr/halshs-00758748
https://halshs.archives-ouvertes.fr/halshs-00758748/document
https://halshs.archives-ouvertes.fr/halshs-00758748/file/Malaize_et_al._2011_cor.pdf
DOI : 10.1177/0959683611400198

Éditeur(s) : HAL CCSD
Résumé : The effects of climate change on extreme events are difficult to assess because extremes present large variability and consequently, it is difficult to identify significant trends in relation to the lack of instrumental long time series. Here we present a record of these extreme storm events in the French Mediterrannean coast over the past 7000 years based on a long sediment core from lagoonal environment in Gulf of Lions. Using a high resolution multiproxies approach on core associating grain size, faunal to reconstruct Mid to Late Holocene history of backbarrier deposits in relation to landfalling activity. Even if change in lagoon geomorphological setting over the Holocene does not allow to compare storm events in terms of intensity trough time, we have recorded six periods of increase in storm activity at 6200, 5500, 4400, 3200, 1500 yr cal B.P. and over the LIA (450 and 100 yr cal B.P.). These evidences of changes in coastal hydrodynamic, inversely correlated to periods of aridification in Western Mediterranean region, are in phase with those observed over the North Atlantic and correspond to Holocene cooling events. This increase in storm activity during Holocene cold events over Mediterranean region was probably due to thermal gradient increase leading to enhanced lower tropospheric baroclinicity over a large Central Atlantic-European domain. This study demonstrates that temperatures in North Atlantic region influence the severe storm activity and therefore the Mediterranean climate at Holocene timescale.
Les effets du changement climatique sur les événements extrêmes sont difficiles à estimer car ces phénomènes présentent une large variabilité, et par conséquent il est délicat d'identifier des tendances significatives compte tenu de l'absence de longues séries de données instrumentales. Dans cette étude, nous présentons un enregistrement de ces tempêtes extrêmes sur la côte Méditerranéenne française au cours des 7000 dernières années à partir de carottes sédimentaires prélevées dans un système lagunaire du Golfe du Lion. L'utilisation d'une approche multi-traceur à haute résolution avec des analyses granulométriques, faunistiques, géochimiques (XRF), en minéraux argileux associées à des données chronologiques de radiocarbone et de 210Pb, 137Cs ; nous a permis de reconstruire l'histoire, au cours de l'Holocène, des dépôts lagunaires en relation avec l'activité des tempêtes. Bien que les paramètres morphologiques de cet environnement lagunaire aient changé durant l'Holocène, ne permettant pas de comparer ces événements au cours du temps en terme d'intensité, nous enregistrons six périodes d'augmentation de l'activité des tempêtes datées à 6200, 5500, 4400, 3200, 1500 an cal B.P. et durant le Petit Age Glaciaire (de 450 à 100 an cal B.P.). Ces changements de l'activité hydrodynamique côtière, en antiphase avec les périodes d'aridifications en Méditerranée de l'Ouest, sont corrélées avec celles observées dans le bassin Nord Atlantique et correspondent aux événements de refroidissement Holocène. L'augmentation de l'activité des tempêtes dans la cette région de la Méditerranée durant les périodes froides, associée à une diminution des températures au pôle Nord, est probablement liée à l'augmentation du gradient thermique qui, par interaction barocline, favorise les cycles d'évolution des tempêtes dans toute l'Europe et la Méditerranée de l'Ouest. Cette étude démontre ainsi que la température dans la région Nord Atlantique influence l'activité des tempêtes extrêmes et donc du climat Méditerranéen à l'échelle de l'Holocène.
https://tel.archives-ouvertes.fr/tel-00437757

tel-00437757
https://tel.archives-ouvertes.fr/tel-00437757
https://tel.archives-ouvertes.fr/tel-00437757/document
https://tel.archives-ouvertes.fr/tel-00437757/file/Sabatier_these.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
STUDY QUESTION: Can protein biomarkers of the male genital tract be identified in human seminal plasma? SUMMARY ANSWER: We identified potential biomarkers for each of the organs participating in the secretions of the human seminal plasma. WHAT IS KNOWN ALREADY: The seminal plasma fulfills critical functions for fertility by providing spermatozoa with a protective milieu, promoting their final maturation and modulating the immune responsiveness of the female reproductive tract. It is also considered to be a promising source of biomarkers of male infertility and/or pathologies of the male genital tract. STUDY DESIGN, SIZE, DURATION: This study combines proteomic analyses of normal seminal plasma together with transcriptomic gene expression profiling of human healthy tissues. MATERIALS, SETTING, METHODS: Non-liquefied seminal plasma proteins from a healthy donor were prefractionated using two sequential Proteominer™ libraries. Eight subproteome fractions were collected, trypsin digested and subjected to three successive mass spectrometry analyses for peptide characterization. The list of identified proteins was compared with and merged with other available data sets of the human seminal plasma proteome. The expression of corresponding genes was then investigated using tissue transcriptome profiles to determine where, along the male reproductive tract, these proteins were produced. Finally, tissue specificity of a selected subset of biomarker candidates was validated on human tissues. MAIN RESULTS AND THE ROLE OF CHANCE: We first performed a proteomic analysis of the human seminal plasma and identified 699 proteins. By comparing our protein list with other previous proteomic data sets, we found that 2545 unique proteins have been described so far in the human seminal plasma. We then profiled their expression at the gene level and identified 83 testis, 42 epididymis, 7 seminal vesicle and 17 prostate candidate protein markers. For a subset of testis-specific candidates, i.e. TKTL1, LDHC and PGK2, we further validated their germ cell expression and demonstrated that such markers could distinguish between semen from fertile and infertile men. LIMITATIONS, REASONS FOR CAUTION: While some of the markers we identified are well-known tissue-specific products, further dedicated studies to validate the biomarker status of new candidates will be required. Additionally, whether or not the abundance of these proteins is indeed decreased in some specific pathological situations remains to be determined. WIDER IMPLICATIONS OF THE FINDINGS: Using an integrative genomics approach, we identified biomarker candidates for each of the organs participating in the seminal plasma production. In this study, we essentially focused on germ cell markers and their potential application for the diagnosis of male infertility. Other types of markers also deserve a focused attention given their potential predictive value for various reproductive disorders, notably for prostate cancers. STUDY FUNDING/COMPETING INTEREST(S): This work was supported by the Proteomics Core Facility at Biogenouest and was funded by Conseil Régional de Bretagne, IBiSA and Agence de la Biomédecine grants. The authors declare that there exists a competing financial interest in this work that is related to a patent application on the use of identified germ cell-specific proteins in an antibody-based assay (Fertichip™) to predict the successful testicular biopsy outcomes in human non-obstructive azoospermia.
ISSN: 0268-1161

inserm-00814146
http://www.hal.inserm.fr/inserm-00814146
DOI : 10.1093/humrep/des360
PUBMED : 23024119