Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The processes active in the deep crust above an oceanic subduction zone during its evolution have been constrained through a detailed geochemical study (major and trace elements and Sr, Nd and Pb isotopes) of representative samples through an 30 km thick exhumed crustal section of the Cretaceous Kohistan oceanic island arc (Northern Pakistan). The use of both trace elements and radiogenic isotopes reveals two distinct geochemical suites (suites A and B) within the JijalPatanKiruKamila (JPKK) complex. Suite A is characterized by a progressive enrichment in Pb-207 and a decrease in Nd-143/Nd-144 with increasing La-N/Sm-N. Suite B has higher Pb-207/Pb-204 and lower Nd-143/Nd-144 ratios with approximately constant La-N/Sm-N. By combining trace elements with different partitioning behaviour it is demonstrated that there is an increasing contribution of the subduction component in the magmas with time. It is also possible to distinguish a slab component imprint carried by aqueous fluids from one corresponding to sediment melts. Intrusive granites are abundant in the upper levels of the JPKK section. All were generated at the arc root level (Jijal crustal section) during dehydration-melting of hornblende-rich plutonic rocks. A three-stage geodynamic model is proposed for the evolution of the arc over a period of 30 Myr. The first stage (117105 Ma) starts with the onset of subduction, which was followed by the building of the volcanic arc. The second stage (10599 Ma to 9691 Ma) corresponds to a major igneous event, which was characterized by abundant magma underplating and granulite-facies metamorphism at the arc base. Recycling of the residualcumulative lower crust into the convective asthenospheric mantle was efficient during this stage, and was probably related to thermo-mechanical erosion of the base of the crust. The last stage (9585 Ma) corresponds to a period of low magmatic activity, which marked the end of the intra-oceanic subduction. This is related to the formation of a cold blanket above the slab surface as a result of thermo-mechanical erosion of the cold walls of the subduction zone (i.e. the upper part of the slab and the base of the overriding plate), and corner flow dragging the cold material into the zone of melt generation. Ultimately, a voluminous magmatic pulse occurred around 85 Ma (forming the Chilas complex), before arccontinent collision.
ISSN: 0022-3530

hal-00420068
https://hal.archives-ouvertes.fr/hal-00420068
DOI : 10.1093/petrology/egp010

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Recent field work and review of radiometric data obtained from Neogene lavas and plutonic rocks exposed in the Eastern Central Patagonian Cordillera (46–48ºS), which overlie subducted segments of the South Chile Ridge, suggest important Late Miocene to Pleistocene morphological changes in relation to base level variations and/or tectonic events. We present new field observations from a region south of Lago General Carrera-Buenos Aires, between the main Cordillera and the Meseta del Lago Buenos Aires, demonstrating that normal faulting controlled valley incisions and occurred during lava emplacement at 5–4 Ma and after 3 Ma. We also show that the 12 Ma basaltic flows of the Meseta del Lago Buenos Aires (~2000 m a.s.l.) have been subjected to deep incision, with younger lavas dated at 1.2 Ma partially filling the valleys. These incisions are thought to reflect progressive eastward tilting of the entire meseta. Our new observations, together with additional features from Central Patagonia, strongly suggest that tectonic events led to a regional widespread morphological change after 5 Ma. The coincidence in time and space between the subduction of segments of the South Chile Ridge at 6 and 3 Ma causing opening of a slab window, and strong base level variations in the studied area, suggests a cause-and-effect relationship. In Central Patagonia, compressional tectonics ended well before extensional events reported here. Causes of uplift and further extension are probably completely disconnected. The uplift is purely tectonic in origin and occurred prior to the subduction of the South Chile Ridge. Extension should be a consequence of this subduction.
ISSN: 0954-4879

insu-00272075
https://hal-insu.archives-ouvertes.fr/insu-00272075
DOI : 10.1111/j.1365-3121.2007.00766.x

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
New structural observations coupled with 15 U/Pb and 24 Ar/Ar new ages from the Karakorum shear zone (KSZ) constrain the timing and slip rate of the right-lateral Karakorum fault zone (KFZ), one of the great continental Asian strike-slip faults. In the Tangtse-Darbuk area, the Tangtse (SW) and Muglib (NE) mylonitic strands of the KSZ frame the less deformed Pangong Range. Inherited U/Pb ages show that granitic protoliths are mostly from the Karakorum and Ladakh batoliths, with a major Miocene melting event lasting from ≥21.5 to 13.5 Ma. Some of the Miocene granitic bodies show structural evidence for intrusion synkinematic to the KSZ. The oldest of these granitoids is 18.8 ± 0.4 Ma old, implying that deformation started prior to ∼19 Ma. Microstructural data show that right-lateral deformation pursued during cooling. Ar/Ar data show that ductile deformation stopped earlier in the Tangtse (∼11 Ma) than in the Muglib strand (∼7 Ma). Deformation ended at ∼11 Ma in the Tangtse strand while it is still active in the Muglib strand, suggesting a progressive localization of deformation. When merged with published observations along the KFZ, these data suggest that the KFZ nucleated in the North Ayilari range at least ∼22 Ma ago. The long-term fault rate is 0.84 to 1.3 cm/yr, considering a total offset of 200 to 240 km. The KSZ collected magma produced within the shear zone and/or deeper in crust for which the producing mechanism stays unclear but was not the lower crustal channel flow.
ISSN: 0278-7407

hal-00745066
https://hal.archives-ouvertes.fr/hal-00745066
DOI : 10.1029/2011TC003049

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
We provide new constraints on the modes of mantle exhumation and denudation in the pre-orogenic Pyrenees by investigating the poorly known peridotites located east of the Lherz body, in eastern Ariè ge (Vicdessos, Urs, Bestiac, Caussou and Prades main peridotitic bodies). We show that: (1) numerous peridotite bodies, not described so far, are constituted by decametric to sub-metric outcrops scattered between and around the main outcrops identified by Monchoux (1970); (2) most of the peridotites form blocks and lenses of various sizes, from millimetric monocrystalline grains to hectometric olistoliths, embedded in debris flows involving mainly Mesozoic metasediments; these peridotites can therefore be linked to the S-type peridotites of Lagabrielle et al. (2010), and share similarities with the peridotites of Lherz region (Clerc et al., 2012). All originated from tectono-sedimentary processes associated with mantle exhumation in relation with extreme thinning and breakoff of the continental basement; (3) the various petrographic characters of these peridotites and their heterogeneity in serpentinisation degree imply a peculiar mode of exhumation, which merges mantle fragments inherited from different structural levels; (4) the lack of tectonic structures such as faults and shear planes associated with the ultramafic-rich breccia formation and the presence of neoformation of metamorphic minerals within the matrix preclude their origin as cataclasites related to the Latest Cretaceous and Tertiary Pyrenean contractional deformation. The peridotites of eastern Ariè ge are indisputable witnesses of the presence of an inverted hyper-extended Cretaceous passive margin forming the current North Pyrenean zone. The geometry of the extensional system was complex and probably associated with strike-slip faults and transcurrent motion. ß 2016 The Authors. Published by Elsevier Masson SAS on behalf of Acadé mie des sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).
ISSN: 1631-0713

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502/document
https://hal-insu.archives-ouvertes.fr/insu-01280502/file/1-s2.0-S1631071316000043-main.pdf
DOI : 10.1016/j.crte.2015.12.003

Éditeur(s) : HAL CCSD IRD
Résumé : International audience
The number of satellites and remote sensing sensors devoted to earth observation becomes increasingly high, providing more and more data and especially images. In the same time the access to such a data and to the tools to process them has been considerably improved. In the presence of such data flow - and regarding the necessity to follow up and predict environmental and societal changes in highly dynamic socio-environmental contexts - we need automatic image interpretation methods. This could be accomplished by exploring some strengths of artificial intelligence. Our main idea consists in inducing classification rules that explicitly take into account structural knowledge, using Aleph, an Inductive Logic Programming (ILP) system. We applied our proposed methodology to three land cover/use maps of the French Guiana littoral. One hundred and forty six classification rules were induced for the 39 land-cover classes of the maps. These rules are expressed in first order logic language which make them intelligible and interpretable by non-experts. A ten-fold cross validation gave average values for classification accuracy, specificity and sensibility equal to, respectively, 98.82 %, 99.65% and 70%. The proposed methodology could be valuably exploited to automatically classify new objects and/or help operators using object-based classification procedures.
Symposium of the Latin American Society for Remote Sensing and Spatial Information Systems (SELPER)
Cayenne, French Guiana

ird-00797337
http://hal.ird.fr/ird-00797337
http://hal.ird.fr/ird-00797337/document
http://hal.ird.fr/ird-00797337/file/Bayoudh_et_al_2012_FP_SELPER-086.pdf
IRD : fdi:010058343

Éditeur(s) : HAL CCSD
Résumé : Weather stations are constantly provided with thousands of satellite images with a view to anticipating the progress of natural phenomenons. This constant flow ofinformation requires speed and a strict analysis. Consequently, it is absolutely necessary to implement systems capable of working night and day, in order to make assessments. In this article, we suggest a method relying on pattern recognition investigation techniques, such as segmentation and classification. These techniques will be used to locate and discriminate the banks of clouds coming from images picked up by the GOES geostationary satellite. Treatment of the cloud shapes which have been found can be carried out, using operations, such as mathematical morphology, so as to draw discriminating characteristics. Classifier systems are used in order to interpret the characteristics which have been obtained and to conduct cloud classification.
15th Meeting of the Caribbean Academy of Sciences
Gosier, Guadeloupe

hal-00524903
https://hal.archives-ouvertes.fr/hal-00524903

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Gibraltar arc, spans a complex portion of the Africa-Eurasia plate boundary marked by slow oblique convergence and intermediate and deep focus seismicity. The seemingly contradictory observations of a young extensional marine basin surrounded by an arcuate fold-and-thrust belt, have led to competing geodynamic models (delamination and subduction). Geophysical data acquired in the past decade provide a test for these models and support a narrow east-dipping, subduction zone. Seismic refraction studies indicate oceanic crust below the western Gulf of Cadiz. Tomography of the upper mantle reveals a steep, east-dipping high P-wave velocity body, beneath Gibraltar. The anisotropic mantle fabric from SKS splitting shows arc-parallel "fast directions", consistent with toroidal flow around a narrow, westward retreating subducting slab. The accompanying WSW advance of the Rif-Betic mountain belt has constructed a thick pile of deformed sediments, an accretionary wedge, characterized by west-vergent thrust anticlines. Bathymetric swath‐mapping images an asymmetric embayment at the deformation front where a 2 km high basement ridge has collided. Subduction has slowed significantly since 5 Ma, but deformation of recent sediments and abundant mud volcanoes suggest ongoing activity in the accretionary wedge. Three possible origins for this deformation are discussed; gravitational spreading, overall NW-SE convergence between Africa and Iberia and finally a WSW tectonic push from slow, but ongoing roll-back subduction. In the absence of arc volcanism and shallow dipping thrust type earthquakes, evidence in favor of present-day subduction can only be indirect and remains the object of debate. Continued activity of the subduction offers a possible explanation for great (M > 8.5) earthquakes known to affect the area, like the famous 1755 Great Lisbon earthquake. Recent GPS studies show SW motion of stations in N Morocco at velocities of 3-6 mm/yr indicating the presence of an independent block, a "Rif-Betic-Alboran" microplate, situated between Iberia and Africa.
ISSN: 0040-1951

insu-00769762
https://hal-insu.archives-ouvertes.fr/insu-00769762
DOI : 10.1016/j.tecto.2012.08.038

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureushost cell interactions.
journées des Microbiologistes de l' INRA 2012
L'Isle sur la Sorgue, France

hal-01209365
https://hal.archives-ouvertes.fr/hal-01209365
PRODINRA : 174569

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Alkali feldspar thermochronologic modeling with the 40Ar/39Ar method has generated marked advances in knowledge of the mechanisms for argon diffusion in feldspars. While the goal in many cases has been to extrapolate the observed and modeled argon behavior in feldspars to natural geological settings, scientific debate surrounding the true feasibility of such extrapolations and indeed, the validity of thermochronologic modeling in itself, have provided much impetus to improve laboratory techniques to test, and increase basic understanding of, argon diffusion. Two cornerstones for the debate over the feasibility of alkali feldspar thermochronology for modeling natural, geologic processes have been: 1. is volume diffusion the main mechanism for argon movement in feldspars? and 2. if volume diffusion is a viable mechanism, does argon then reside in discrete ‘domains' within the feldspar lattice? We describe a study of alkali feldspars from a profile through a well-controlled brittle fault zone in western Norway; the feldspars document argon loss during deformation and strongly suggest the existence of argon ‘domains' within the feldspars, at least during laboratory step heating. The progressive change in the character of argon diffusion is recognizable in the logr/ro diffusion data from the feldspars and is mimicked by physical changes observed optically in the feldspars through progressive degrees of brittle deformation. Modeling results indicate a reduction in size of the biggest domains and the appearance of smaller domains during the strongest stages of deformation. Whether or not this reveals the existence and the transformation of the domain structure in naturo is difficult to prove from our data alone, but interestingly, this behaviour corresponds directly to the physical (optical) appearance of more intense crack networks and subgrains in progressively more brecciated feldspars. Because the thermochronologic histories derived from modeling the feldspar data conform very well to the known tectonic history of the area, the feldspars appear to have successfully retained physical (optical and isotopic) records of episodic tectonic processes operating from ductile through lowtemperature brittle regimes in rocks with a Caledonian history overprinted by several later (younger) geologic events. However, because the ‘cold' brecciation is the last tectonothermal event recorded by these rocks, it is impossible to truly test for the existence of diffusion domains in naturo. Argon loss appears to have been effective only in the most highly brecciated (deformed) samples where the combination of the connected crack network, increased fluid flow and higher temperatures enhanced diffusion via fast diffusion pathways and thus, volume diffusion from the lattice. Only minor argon loss occurred in zones of lower brittle strain, although some development of cracks and brittle features is evident. Independent of the existence of diffusion domains, this study highlights the possible pitfalls when cooling histories are deduced from brecciated feldspars in which age and diffusion charateristics have been decoupled: while the geochronological memory has survived and is identical to that of nonbrecciated feldspars (suggesting no loss and minor effects of deformation), the diffusion characteristics have been completely transposed by brecciation and the appearance of new domains. Modeling feldspars with these latter characteristics would effectively utilise a new feldspar diffusion structure with an ‘old' (relict) age memory.
ISSN: 0016-7037

hal-00198283
https://hal.archives-ouvertes.fr/hal-00198283
https://hal.archives-ouvertes.fr/hal-00198283/document
https://hal.archives-ouvertes.fr/hal-00198283/file/KsparBreccia_Arnaud_Eide_GCA_2000.pdf

Résumé : Les méthodes classiques d'analyse d'images satellites sont inadaptées au volume actuel du flux de données. L'automatisation de l'interprétation de ces images devient donc cruciale pour l'analyse et la gestion des phénomènes observables par satellite et évoluant dans le temps et l'espace. Ce travail vise à automatiser la cartographie dynamique de l'occupation du sol à partir d'images satellites, par des mécanismes expressifs, facilement interprétables en prenant en compte les aspects structurels de l'information géographique. Il s'inscrit dans le cadre de l'analyse d'images basée objet. Ainsi, un paramétrage supervisé d'un algorithme de segmentation d'images est proposé. Dans un deuxième temps, une méthode de classification supervisée d'objets géographiques est présentée combinant apprentissage automatique par programmation logique inductive et classement par l'approche multi-class rule set intersection. Ces approches sont appliquées à la cartographie de la bande côtière Guyanaise. Les résultats démontrent la faisabilité du paramétrage de la segmentation, mais également sa variabilité en fonction des classes de la carte de référence et des données d'entrée. Les résultats de la classification supervisée montrent qu'il est possible d'induire des règles de classification expressives, véhiculant des informations cohérentes et structurelles dans un contexte applicatif donnée et conduisant à des valeurs satisfaisantes de précision et de KAPPA (respectivement 84,6% et 0,7). Ce travail de thèse contribue ainsi à l'automatisation de la cartographie dynamique à partir d'images de télédétection et propose des perspectives originales et prometteuses.
Classical methods for satellite image analysis are inadequate for the current bulky data flow. Thus, automate the interpretation of such images becomes crucial for the analysis and management of phenomena changing in time and space, observable by satellite. Thus, this work aims at automating land cover cartography from satellite images, by expressive and easily interpretable mechanism, and by explicitly taking into account structural aspects of geographic information. It is part of the object-based image analysis framework, and assumes that it is possible to extract useful contextual knowledge from maps. Thus, a supervised parameterization methods of a segmentation algorithm is proposed. Secondly, a supervised classification of geographical objects is presented. It combines machine learning by inductive logic programming and the multi-class rule set intersection approach. These approaches are applied to the French Guiana coastline cartography. The results demonstrate the feasibility of the segmentation parameterization, but also its variability as a function of the reference map classes and of the input data. Yet, methodological developments allow to consider an operational implementation of such an approach. The results of the object supervised classification show that it is possible to induce expressive classification rules that convey consistent and structural information in a given application context and lead to reliable predictions, with overall accuracy and Kappa values equal to, respectively, 84,6% and 0,7. In conclusion, this work contributes to the automation of the dynamic cartography from remotely sensed images and proposes original and promising perpectives

http://www.theses.fr/2013AGUY0671/document

Éditeur(s) : Elsevier Sci Ltd
Résumé : A detailed morphological analysis of the outer shelf and continental slope of the Western Gulf of Lion is presented, based on swath bathymetry data together with sub-bottom profiles and high resolution seismic reflection profiles. These data reveal two main erosive features, of very different dimensions: the axial incision and the canyon's major valley. The height of axial incisions' flanks with respect to the canyon deepest point (the thalweg) ranges from 40 to 150 m. It creates a small axial erosive path within the canyon's major valley, which is typically bounded by flanks of more than 700 m in height. We interpret the axial incision observed in the sea floor as the imprint of turbidity currents that eroded the floor of canyons during phases of connection to rivers (hyperpycnal turbidity current). Such currents are most likely to have formed during the Last Glacial Maximum (LGM) as both proximity of the shoreline (due to the lowstand of sea level) and high detrital sediment supply (due to glacial abrasion upstream) increased the flow of sediments delivered to the canyon heads. Fossil axial incisions, observed in seismic lines, are related to equivalent conditions. The axial incision, however, has a key influence on canyon evolution as it triggers mass wasting of different sizes that affect the canyon's major valley (head and flanks). We interpret the geometry of the canyon's major valley as the result of recurrent activity of axial incisions. These periods of activity occurred during low sea levels at glacial maxima and show a cyclicity of 100,000 years for the last 400,000 years.
Marine And Petroleum Geology (0264-8172) (Elsevier Sci Ltd), 2005-06 , Vol. 22 , N. 6-7 , P. 805-826

Droits : 2005 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2005/publication-353.pdf
DOI:10.1016/j.marpetgeo.2005.03.011
http://archimer.ifremer.fr/doc/00000/353/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We present new shear-wave splitting measurements performed at 16 stations on the East European Craton, and discuss their implications in terms of upper-mantle anisotropy for this geophysically poorly-known region. Previous investigations of mantle anisotropy in Central Europe have shown fast directions aligning smoothly with the craton's margin and various suggestions have been proposed to explain their origin such as asthenospheric flow or lithospheric frozen-in deformation.;Here, we aim at investigating the continuation of this shear-wave splitting pattern further to the East, into the East European Craton For the craton, the interpretation appears to be less ambiguous than for central Europe since several arguments support lithospheric anisotropy in this region 1) The large-scale coherence within either of the four constituting blocks and the significant variations between the blocks on a small-scale, 2) the weak correlation with absolute plate motion vectors, and 3) the good correlation between anisotropy and crustal features, for which we use magnetic field alignments as a proxy. Rattler good correlation of these magnetic features with seismic fast orientations strongly supports the idea of vertically coherent deformation throughout upper mantle and crust. The observed splitting orientations thus reflect the last tectonic events of each block. frozen-in into the lithosphere for hundreds of millions of years
ISSN: 0040-1951

hal-00475647
https://hal.archives-ouvertes.fr/hal-00475647
https://hal.archives-ouvertes.fr/hal-00475647/document
https://hal.archives-ouvertes.fr/hal-00475647/file/Wuestefeld_EEC_craton_SKS_Tphy2010_hal.pdf
DOI : 10.1016/j.tecto.2009.01.010

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Studies of paleomagnetic fields during polarity transitions recorded over the past few million years frequently suggest a configurational persistence consistent with long-lived mantle control over the pattern of flux emanating from Earth's fluid core. Fundamental to an understanding of the core-mantle dynamics involved is the question of the spatial-temporal nature of the physical conditions at the base of the mantle that may be responsible. Our analysis of the field during a mid-Cenozoic, reverse-to-normal (R-N) polarity change, recorded in a continuous sequence of lava flows in southeastern Queensland, Australia, provides strong evidence that the time span over which local mantle features retain such an influence is far longer than had thus far been observed. Specifically. the reversal is dominated by two sequential groupings of transitional magnetic vector directions, each associated with a clustering of virtual geomagnetic poles (VGPs) at locations common to several more youthful reversal datasets from about the globe. Our Ar-40/Ar-39 age determinations indicate that these Australian lavas erupted 25.56 +/- 0.48 Ma, strongly suggesting that the characteristic time for invariant control by the mantle over flux emerging from the outer core is at least on order of a few tens of Myr. The availability of transitional paleomagnetic data from still earlier times within the Cenozoic may further delineate this duration and, perhaps, provide a means to track changes in the pattern of long-standing concentrations of magnetic flux at the core-mantle boundary. (C) 2008 Elsevier B.V. All rights reserved.
ISSN: 0031-9201

hal-00411919
https://hal.archives-ouvertes.fr/hal-00411919
DOI : 10.1016/j.pepi.2008.07.012

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Random walk (RW) or Continuous Time Random Walk (CTRW) are recurring Monte Carlo methods used to model convective and diffusive transport in complex heterogeneous media. Many applications can be found, including fluid mechanic, hydrology, and chemical reactors modeling. These methods are easy to implement, very versatile and flexible enough to become appealing for many applications because they generally overlook of deeply simplify the building of explicit complex meshes required by deterministic methods. RW and CTRW provide a good physical understanding of the interactions between the space scales of het-erogeneities and the transport phenomena under consideration. In addition, they can result in efficient up-scaling methods, especially in context of flow and transport in fractured media. In the present study, we review the applications of RW or CTRW for several situations coping with various spatial scales, and different insights into up-scaling applications. RW and CTRW advantages and downsides are also discussed, thus providing a few avenues for further works and applications.
ISSN: 0169-3913

hal-01449131
https://hal.archives-ouvertes.fr/hal-01449131
https://hal.archives-ouvertes.fr/hal-01449131/document
https://hal.archives-ouvertes.fr/hal-01449131/file/0025972-02.pdf
DOI : 10.1007/s11242-016-0693-z

Éditeur(s) : HAL CCSD
Résumé : The main purpose of this thesis was to characterize and to model the hydrodynamic and thermochemical processes leading to the alteration of the wellbore cement materials under borehole conditions. Percolation experiments were performed on fractured cement samples under CO2 storage conditions (60°C and 10MPa). Injection flow rate was dictated by the fracture aperture of each sample. CO2 enriched brine was flowed along the fracture aperture, and permeability changes as well as chemical evolution of major cations were continuously acquired during the experiment time. Reaction paths developed by the alteration of the cement were characterized using microtomography and ESEM images. The experiments conducted using samples presenting large fracture apertures during 5h showed that permeability was maintained constant during the experiment time. Three reacted layers were displaying by the alteration of portlandite and CSH. Long term experiment (26h) conducted with large initial fracture aperture showed a decrease of the permeability after 15hours of CO2 exposure. Otherwise, experiments performed on samples presenting narrow apertures indicated the conversion of portlandite and CSH to calcite leading to the permeability reduction and the fracture clogging. Assemblages of phases and chemical changes were modelled using GEMS-PSI speciation code. We studied also using a coupled transport-reactive model the conditions leading to the cement alteration and the formation of associated layers.
L'objectif de cette thèse était de modéliser à partir des expériences de percolation-réactive, les processus hydrodynamique et réactionnel qui gouvernent l'altération des ciments de puits. Différentes expériences ont été réalisées dans des conditions représentatives de celles du stockage du CO2. Des échantillons fracturés ont été utilisés pour injecter une saumure enrichie en CO2 à 60°C et 10MPa et à différentes pressions partielles de CO2. Le débitd'injection variait en fonction des propriétés hydrauliques de l'échantillon exposé. L'injection d'une saumure enrichie en CO2 à débit constant à travers une fracture supposée plane a permis d'étudier les modifications des propriétés hydrodynamiques et ces conséquences sur la géochimie et la microstructure du ciment altéré. L'impact dynamique de l'évolution microstructurale a été mis en évidence. Les expériences conduites sur des échantillons présentant de larges ouvertures, réalisées sur une durée de 5 h, ont montré que la perméabilité était maintenue constante le long de l'expérience. Trois couches d'altération se sont développées consécutivement à la dissolution de la portlandite et la décalcification des CSH. L'altération a entrainé la précipitation des carbonates et de la silice amorphe à proximité de la fracture. Dans le cas d'une expérience longue durée appliquant les mêmes conditions que précédemment on a observé que la croissance de la silice amorphe a entrainé la diminution de la perméabilité. Par ailleurs les expériences effectuées sur des échantillons présentant de faibles ouvertures, ont indiqué que la conversion de la portlandite en calcite conduit au colmatage de la fracture. L'évolution des assemblages de phases conduisant à la formation des carbonates et de la silice amorphe a été modélisée à partir du code géochimique GEMS. Les mécanismes de diffusion et les processus de mise en place des couches d'altération ont été étudiés à partir d'un modèle analytique et d'un modèle de transport réactif à partir du code géochimique PHREEQC.
https://tel.archives-ouvertes.fr/tel-01038034

tel-01038034
https://tel.archives-ouvertes.fr/tel-01038034
https://tel.archives-ouvertes.fr/tel-01038034/document
https://tel.archives-ouvertes.fr/tel-01038034/file/theseabdoulghafour.pdf

Éditeur(s) : HAL CCSD
Résumé : Staphylococcus aureus can cause a wide range of infections in humans and warm-blooded animals. The epithelial surface is the principal site of staphylococcal infection. The goal of this work was to investigate the cytopathic effect of S. aureus and its ability to affect host cell cycle. Cultures of human cervix cancer HeLa and mammary gland bovine MAC-T epithelial cells were used to study in vitro the effects of S. aureus strains from human or ruminant origins. Using microscopic examination, we found that S. aureus induced an enlargement of the host cells and we observed that S. aureus slowed down cell proliferation. Similar effect was observed on both human and bovine cells using the human or the ruminant strains. Microscopic analysis of DAPI-stained cells revealed huge decrease of mitotic indexes in infected HeLa and Mac-T cells, synchronized by Double Thymidine Block. Flow cytometry analysis showed that S. aureus induces G2/M phase delay in synchronous HeLa cells. Western blot analysis revealed that the G2/M phase delay was associated with an accumulation of inactive phosphorylated cyclin-dependent kinase Cdk1/cdc2, a key inducer of mitosis entry, and dephosphorylation of core histone H3, an important component of the epigenetic landscape. Altogether, these results suggest that the delay in G2/M phase transition of the infected epithelial cells may be one of the mechanisms employed by S. aureus to survive and to propagate inside the host. Further investigations are ongoing to fully understand the mechanisms associated to this type of S. aureus-host cell interactions.
International Symposium on Staphylococci and Staphylococcal Infections -ISSSI-2012
Lyon, France

hal-01209356
https://hal.archives-ouvertes.fr/hal-01209356
PRODINRA : 173265

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
This article is intended as a preliminary report on the implementation of a finite volume multilevel scheme for the discretization of the incompressible Navier-Stokes equations. As is well known, the use of staggered grids (e.g., MAC grids [M. Perić, R. Kessler and G. Scheuerer, Comput. & Fluids 16 (1988), no. 4, 389-403; Zbl 0672.76018]) is a serious impediment for the implementation of multilevel schemes in the context of finite differences. This difficulty is circumvented here by the use of a colocated finite volume discretization [S. Faure, J Laminie and R. Temam, "Colocated finite volume schemes for fluid flows'', submitted; M. Perić, R. Kessler and G. Scheuerer, op. cit.], for which the algebra of multilevel methods is much simpler than in the context of MAC type finite differences. The general ideas and the numerical simulations are presented in this article in the simplified context of a two-dimensional Burgers equation; the two- and three-dimensional Navier-Stokes equations, which introduce new difficulties related to the incompressibility condition and the time discretization, will be considered elsewhere [see S. Faure, J Laminie and R. Temam, op. cit.; "Finite volume discretization and multilevel methods for the Navier-Stokes equations'', in preparation].
ISSN: 0885-7474

hal-00730193
https://hal.archives-ouvertes.fr/hal-00730193

Éditeur(s) : HAL CCSD Wiley
Résumé : [b]Aim[/b][br/] Many tropical tree species have poorly delimited taxonomic boundaries and contain undescribed or cryptic species. We examined the genetic structure of a species complex in the tree genus Carapa in the Neotropics in order to evaluate age, geographic patterns of diversity and evolutionary relationships, and to quantify levels of introgression among currently recognized species.[br/] [br/] [b]Location[/b][br/] Lowland moist forests in the Guiana Shield, the Central and Western Amazon Basin, Chocó and Central America.[br/] [br/] [b]Methods[/b][br/] Genetic structure was analysed using seven nuclear simple sequence repeats (nuSSR), five chloroplast SSRs (cpSSR), and two chloroplast DNA (cpDNA) intergenic sequences (trnH-psbA and trnC-ycf6). Bayesian clustering analysis of the SSR data was used to infer population genetic structure and to assign 324 samples to their most likely genetic cluster. Bayesian coalescence analyses were performed on the two cpDNA markers to estimate evolutionary relationships and divergence times.[br/] [br/] [b]Results[/b][br/] Two genetic clusters (nu_guianensis and nu_surinamensis) were detected, which correspond to the Neotropical species C. guianensis (sensu latu) and C. surinamensis. Fourteen cpDNA haplotypes clustered into six haplogroups distributed between the two nuclear genetic clusters. Divergence between the haplogroups was initiated in the Miocene, with some haplotype structure evolving as recently as the Pleistocene. The absence of complete lineage sorting between the nuclear and chloroplast genomes and the presence of hybrid individuals suggest that interspecific reproductive barriers are incomplete. NuSSR diversity was highest in C. guianensis and, within C. guianensis, cpDNA diversity was highest in the Central and Western Amazon Basin. Regional genetic differentiation was strong but did not conform to an isolation-by-distance process or exhibit a phylogeographical signal.[br/] [br/] [b]Main conclusions[/b][br/] The biogeographical history of Neotropical Carapa appears to have been influenced by events that took place during the Neogene. Our results point to an Amazonian centre of origin and diversification of Neotropical Carapa, with subsequent migration to the Pacific coast of South America and Central America. Gene flow apparently occurs among species, and introgression events are supported by inconsistencies between chloroplast and nuclear lineage sorting. The absence of phylogeographical structure may be a result of the ineffectiveness of geographical barriers among populations and of reproductive isolation mechanisms among incipient and cryptic species in this species complex.
ISSN: 0305-0270

hal-01032395
https://hal.archives-ouvertes.fr/hal-01032395
DOI : 10.1111/j.1365-2699.2011.02678.x

Éditeur(s) : HAL CCSD
Résumé : Geological storage of CO2 is one of diverse technologies being explored to reduce atmospheric carbon fromindustrial processes (i.e. fossil fuel combustion). One of the specific features of CO2 injection is the possibility ofgeochemical reactions (dissolution – precipitation) between mobile reactive brine (e.g. formation water enrichedin CO2) and the host rock during the spatial and temporal evolution of CO2. That leads to modifications in thepore structure, which in turn change the flow dynamics of the reservoir (e.g. the permeability k). Then, thesesstructural modifications can largely control the injectivity, so that the pressure field in the reservoir and also theCO2 propagation. Accordingly, it is crucial to explore the changes in the reservoir properties (e.g. structural andhydrodynamic) induced during a CO2 injection and specially the relationships between them (e.g. k or reactivesurface-Sr versus porosity-φ , k versus rock heterogeneity), for developing predictive modelling tools of thetransport and reaction processes occurring during a CO2 injection and reliable risk assessment. In the case ofcarbonate rocks, the application of the predictive models of transport and reaction is still challenging, because oftheir high heterogeneity so that the incertitude in the reaction kinetics of carbonate minerals.From this perspective, we realized brine-enriched in CO2 percolation experiments through carbonate rocksamples in thermodynamic conditions expected during CO2 injection in deep reservoirs (T = 100°C et P =12MPa). The permeability changes k(t) is monitored during the experiments and the porosity variationφ (t) iscalculated from chemical analyses of the sampled outlet fluids, using ICP-EAS. The pore structure modificationsare investigated from high resolution X ray micro tomography images acquired from the synchrotron ofGrenoble (ESRF). Depending to the dissolution regime, controlled by the reservoir rock fabric and the chemicalcomposition of the brine (e.g. PCO2), we observed that a modification of pore structure can either improve(atypical result in dissolution context) or impair the value of the permeability k.
Le stockage géologique du CO2 est l’une des diverses technologies étant explorées afin deréduire les émissions de carbone atmosphérique des processus industriels (i.e. combustion del’énergie fossile). L’une des spécifiques caractéristiques de l’injection du CO2 en profondeurreste la possibilité de réactions géochimiques (dissolution-précipitation) entre la saumureréactive mobile (e.g. eau de formation enrichie en CO2) et la roche encaissante durantl’évolution spatiale et temporelle du CO2, conduisant à des modifications dans la structure despores et par conséquent dans les propriétés d’écoulement du réservoir (e.g. la perméabilité k).Donc, ces changements structuraux peuvent largement contrôler l’injectivité, ainsi que lechamp de pression dans le réservoir et aussi la propagation du CO2. Il demeure ainsi cruciald’explorer les changement dans les propriétés de réservoirs (e.g. structurales ethydrodynamiques) induits durant une injection de CO2 et explicitement les relations existantesentre eux (e.g. k ou surface réactive-Sr versus porosité-φ , k versus hétérogénéité de la roche),afin de développer des outils de modélisation prédictive des processus de transport etréactionnels se produisant durant une injection de CO2 et d’évaluer de façon fiable les risques.Dans le cas des réservoirs carbonatés, l’application des modèles prédictifs de transport réactifdemeure toujours un enjeu, car contrainte par la forte hétérogénéité en leur sein ainsi que parl’incertitude dans la cinétique de réactions des minéraux carbonatés dans ce contexte. Danscette optique, nous avons réalisé des expériences de percolation à travers des échantillons deroches carbonatées dans les conditions thermodynamiques de stockage en profondeur (T =100°C et P =12 MPa). L’évolution de la perméabilité k(t) est suivie au cours desexpériences ; et la variation de la porosité φ (t) est calculée à partir des résultats d’analyseschimiques au ICP-AES des fluides de sortie échantillonnés. L’investigation des modificationsapportées à la structure des pores est réalisée par le biais de la Micro-Tomographie hauterésolution à rayon X, acquise au synchrotron de Grenoble (e.g. ESRF).Dépendant du régime de dissolution, contrôlé par la fabrique de la roche réservoir et lacomposition chimique de la saumuré chargée en CO2 (e.g. PCO2 engagée), on a observéqu’une modification de la structure de la roche peut soit améliorer soit détériorer (résultatatypique en contexte de dissolution) la valeur de la perméabilité k.
https://hal.archives-ouvertes.fr/tel-01142136

tel-01142136
https://hal.archives-ouvertes.fr/tel-01142136
https://hal.archives-ouvertes.fr/tel-01142136/document
https://hal.archives-ouvertes.fr/tel-01142136/file/thesemangane2013.pdf

Éditeur(s) : HAL CCSD
Résumé : Karst systems are the most important groundwater reservoirs in Mediterranean areas. Their structure and functioning are complex and not well known because of the high heterogeneity created and organised by groundwater flow. Water storage entities and water storage changes within remain difficult to assess by direct measurement and modelling. Geodetic monitoring is here used to constrain and bring original insights on karst system functioning. The Durzon karst system (Larzac plateau, Southern France) is monitored by several geodetic techniques: - Monthly absolute gravity measurements at three sites - Time-lapse surface to depth gravity measurements - Time-lapse microgravity surveying - Continuous long base hydrostatic tiltmeter monitoring at two sites Absolute gravity monitoring complemented with relative gravity surveys allows quantification of water storage changes on the studied karst system. Interannual water storage changes as detected by gravity are ~400 mm in amplitude. These storage changes are shown to occur in the epikarst and infiltration zone in certain areas. Water storage variations spatial heterogeneity is also demonstrated on the karst system. Tilt measurements monitor fast and slow infiltration processes within the karst fractured media. Karst system geodetic monitoring brings both quantitative and integrated hydrologic knowledge. Such methods could be applied to other karst aquifer studies.
Les aquifères karstiques constituent l'essentiel des ressources en eau souterraine sur le pourtour de la Méditerranée. Leur structure et leur fonctionnement sont complexes et mal connus à cause du processus de karstification qui hiérarchise la circulation hydrodynamique en leur sein. La localisation du stockage de l'eau et de ses variations au sein de tels aquifères est difficile à mesurer et à modéliser. Nous utilisons les outils de la géodésie pour apporter de nouvelles contraintes sur le fonctionnement hydrologique et les variations de stock d'eau en milieu karstique. Ainsi, le système karstique du Durzon, (Causse du Larzac, France) fait l'objet d'un suivi par plusieurs méthodes géodésiques incluant: - Des mesures de gravimétrie absolue en trois sites répétées de manière mensuelle ; - Des mesures répétées de gravimétrie relative entre la surface et la profondeur du karst ; - Des mesures répétées de microgravimétrie ; - Des mesures inclinométriques longue base en deux sites. Nous démontrons que le couplage entre la gravimétrie absolue et relative permet d'appréhender les variations de stock d'eau sur le bassin d'alimentation étudié. Les variations inter-anuelles observées sont de l'ordre de 400 mm, et nous montrons que celles-ci s'opèrent dans certaines zones au sein des horizons supérieurs du karst : épikarst et zone d'infiltration. Une forte hétérogénéité spatiale des variations de stockage est aussi mise en évidence à l'échelle du bassin d'alimentation. Les mesures inclinométriques permettent de suivre les phénomènes d'infiltration rapide et lente dans la masse karstique fracturée. Le suivi géodésique de ce système karstique permet d'apprécier quantitativement et de façon intégrée son fonctionnement hydrologique et pourra être transposé pour l'étude d'autres aquifère karstiques.
https://tel.archives-ouvertes.fr/tel-00404851

tel-00404851
https://tel.archives-ouvertes.fr/tel-00404851
https://tel.archives-ouvertes.fr/tel-00404851/document
https://tel.archives-ouvertes.fr/tel-00404851/file/THESE_jacob.pdf