Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The hydraulic and electrical properties of pyroclastic rocks have been investigated in laboratory on a representative sampling of Montagne Pelée (Martinique, France) deposits with renewed interest in geophysical applications. This sampling covers all the lithologic units of this volcano: lava dome and lava flows, pumices from ash-and-pumice fall and flow deposits, lava blocks from block-and-ash flow and Peléean “nuées ardentes” deposits, scoriae from scoria flow deposits. The connected porosity varies over a wide range from 3 to 62%. The unconnected porosity is important only on pumices where it can reach 15%. The permeability covers more than 5 orders of magnitude, ranging from 10−16 to 35 × 10−12 m2. The higher values are obtained on lava blocks and the scoriae, even if these rocks are less porous than the pumices. The formation factor ranges from 7 to 1139. The transport properties of these rocks are slightly correlated with porosity. This indicates that these properties are not only controlled by the connected porosity. To connect the transport properties to the textural characteristics of the pore network of pyroclastic rocks, different models, based on geometrical considerations or percolation theory, were tested. The pore access radius distribution and the tortuosity control the transport properties of pyroclastic rocks. Consequently, the models (electric and hydraulic) based on the concept of percolation (e.g., the models of Katz and Thompson), apply better than the equivalent channel model of Kozeny-Carman. In addition, the difference in transport properties observed on lava blocks and pumices confirms that the mechanisms of degassing and vesiculation are different for these two types of rock.
ISSN: 2169-9313

hal-00310237
https://hal.archives-ouvertes.fr/hal-00310237
DOI : 10.1029/2006JB004385, 2007

Éditeur(s) : HAL CCSD
Résumé : poster
International audience
Locations for earthquake recorded in the Lesser Antilles subduction zone are processed separately by regional observatories, NEIC and ISC. There is no earthquake location catalog available compiling all available phase arrival data. We propose a new best complete earthquake catalog by merging all available phase arrival data for better constrains on earthquake locations. ISC provides the phase arrival data of 29243 earthquakes (magnitude range from 1.4 to 6.4) recorded by PRSN (Porto Rico), SRC (British West Indies), and from FUNVISIS (Venezuela). We add phases data from IPGP observatories for 68718 earthquakes from magnitudes 0.1 to 7.5 (OVSG, Guadeloupe, recorded 53226 earthquakes since 1981, and OVSM, Martinique, recorded 29931 earthquakes since 1972). IPGP also provides the accelerometer waveform data of the GIS-RAP network. We achieved automatic picking on the GIS-RAP data using the Component Energy Correlation Method. The CECM provides high precision phase detection, a realistic estimation of picking error and realistic weights that can be used with manual pick weights. The CECM add an average of 3 P-waves and 2 S-waves arrivals to 3846 earthquakes recorded by the GIS-RAP network since 2002. The final catalog contains 84979 earthquakes between 1972 and 2013, 24528 of which we compiled additional data. We achieve earthquake location using NonLinLoc, regional P and S waves data and a set of one dimensional velocity models. We produce improved locations for 22974 earthquakes (better residuals, on equal or larger arrival dataset) and improved duration magnitudes for 6258 earthquakes (using duration data and improved locations). A subset of best constrained 15626 hypocenters (with more than 8 phases and an average RMS of 0.48_0.77s) could be used for structural analysis and earthquake local tomography. Relative locations are to be applied in order to image active faulting. We aim to understand coupling in the seismogenic zone as well as triggering mechanisms of intermediate depth seismicity like fluid migration beneath the volcanic arc.
Geophysical Research Abstracts
Vienne, Austria

hal-01059207
https://hal-brgm.archives-ouvertes.fr/hal-01059207

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Four decades after their introduction, the validity of fault slip inversion methods based on Wallace (1951) and Bott (1959) hypothesis, which states that the slip on each fault surface has the same direction and sense as the maximum resolved shear stress, is still a subject of debate. According to some authors, this hypothesis is questionable since fault mechanical interactions induce slip reorientations as confirmed by geomechanical models. This leads us to ask as to what extent the Wallace-Bott simplifications are reliable as a basis hypothesis for stress inversion from fault slip data. In this paper, we compare two inversion methods; the first is based on the Wallace-Bott hypothesis, and the second relies on geomechanics and mechanical effects on fault heterogeneous slip distribution. In that context, a multi-parametric stress inversion study covering (i) the friction coefficients (μ), (ii) the full range of Andersonian state of stress and (iii) slip data sampling along the faults is performed. For each tested parameter, the results of the mechanical stress inversion and the Wallace-Bott (WB) based stress inversion for slip are compared in order to understand their respective effects. The predicted discrepancy between the solutions of both stress inversion methods (based on WB and mechanics) will then be used to explain the stress inversions results for the chimney Rock case study. It is shown that a high solution discrepancy is not always correlated with the misfit angle (ω ) and can be found under specific configurations (View the MathML sourceR−, θ, μ, geometry) invalidating the WB solutions. We conclude that in most cases the mechanical stress inversion and the WB based stress inversion are both valid and complementary depending on the fault friction. Some exceptions (i.e. low fault friction, simple fault geometry and pure regimes) that may lead to wrong WB based stress inversion solutions are highlighted.
ISSN: 0040-1951

hal-01467165
https://hal.archives-ouvertes.fr/hal-01467165
DOI : 10.1016/j.tecto.2016.11.039

Éditeur(s) : HAL CCSD Elsevier
Résumé : This manuscript is an extended version, including an updated bibliography, of the article: Hierarchical cooperativity mediated by chromatin remodeling; the model of the MMTV transcription regulation. Michel, D. 2011. J. Theor. Biol. 287, 74-81
International audience
Chromatin remodeling machineries are abundant and diverse in eukaryotic cells. They have been involved in a variety of situations such as histone exchange and DNA repair, but their importance in gene expression remains unclear. Although the influence of nucleosome position on the regulation of gene expression is generally envisioned under the quasi-equilibrium perspective, it is proposed that given the ATP-dependence of chro-matin remodeling enzymes, certain mechanisms necessitate non-equilibrium treatments. Examination of the celebrated chromatin remodeling system of the mouse mammary tumor virus, in which the binding of transcription factors opens the way to other ones, reveals that breaking equilibrium offers a subtle mode of transcription factor cooperativity, avoids molecular trapping phenomena and allows to reconcile previously conflicting experimental data. This mechanism provides a control lever of promoter responsiveness to transcription factor combinations, challenging the classical view of the unilateral influence of pioneer on secondary transcription factors.
ISSN: 0022-5193

hal-01211233
https://hal.archives-ouvertes.fr/hal-01211233
https://hal.archives-ouvertes.fr/hal-01211233/document
https://hal.archives-ouvertes.fr/hal-01211233/file/nucleosome.pdf
ARXIV : 1509.07440

Éditeur(s) : HAL CCSD Springer Verlag
Résumé :  
A closed depression is defined as a geomorphologic element where a sediment depository is encircled by hillslopes. Despite the fact that closed depressions are often the only stagnant water points in many European landscapes, few ecological researches on their plant assemblages have been done. The main goal of this study was to give first results of the environmental factors responsible for the vegetation composition, richness and rarity in the closed depressions of the Lorraine biogeographical district (Belgium, France and grand-duche de Luxembourg). We surveyed for plant presence 85 forest and 77 grassland closed depressions. For each site, wetland area, local environmental factors and regional connectivities registered. For each species, the Ellenberg values were compiled. To investigate the main source of variation in species composition and in species richness (including richness in rare species), Non-metric Multidimensional Scaling analyses and Generalized Linear Models were respectively used. Species pools in forest (forest and preforest species) and in grassland (bog plants, pioneers, helophytes) were quite different. In both landscapes, a gradient from plants typical of basic high-productive soils to plants typical of acid low-productive soils reflects a shared successional gradient. The accumulation of organic matter allowed the establishment of Sphagnum spp., which slowly acidified the soil and thus acted as ecosystem engineers for the arrival of bog plants. Moreover, the species composition was additionally driven by the plant light tolerance in forests and by the plant water requirements in grasslands. Mechanisms of species accumulation (increase in species richness) were different in forests and in grasslands: respectively related to the plant light tolerance and to the wetland area. At the regional level, the averaged soil productivity was negatively related to the richness in rare species. Indeed, perennial highly-competitive plants such as Glyceria spp., Iris pseudacorus or Urtica dioica impeded the establishment of smaller and rarer species. At the habitat level, isolated closed depressions (due to either low connectivity or low grazing pressure) have more habitat rare species, giving evidences of dispersal limitation in plant assemblages of closed depressions.
ISSN: 0960-3115

hal-01032125
https://hal.archives-ouvertes.fr/hal-01032125
DOI : 10.1007/s10531-007-9227-x

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
Wadsleyites with various iron contents were synthesized at ~12-14 GPa and 1400 °C under oxidizing and hydrous conditions in coexistence with enstatite. The samples were studied using micro-X-ray absorption near edge structure (XANES) and micro-Mössbauer spectroscopy to determine the ferric iron contents in polyphasic samples and secondary ion mass spectrometry (SIMS) to determine the water concentrations. XANES and Mössbauer analyses show that ferric iron content increases with increasing total iron content, and reaches a maximum of ~30% Fe3+/Fetotal. Two XANES results were cross-checked by Mössbauer analysis and both methods are in reasonable agreement. The use of Fourier transform infrared spectroscopy reveals a new protonation scheme in wadsleyite, with a significant proportion of protons associated with the high-frequency band at 3611 cm−1 and a new band located at 3500 cm−1. The intensity of these two bands is higher for Fe3+-rich wadsleyite. SIMS analyses show that water contents in wadsleyite vary from 4500 to 9400 ppm H2O by weight. Pyroxene water contents range from 790 to 1600 ppm wt H2O. The concentration of water in both phases decreases with increasing iron content. The partition coefficient of water between wadsleyite and pyroxene varies between 5 and 9 and increases with increasing Fe-number of wadsleyite [i.e., XFe/(XFe + XMg) × 100 ratio]. The divalent cation concentrations (i.e., Mg2+ + Fe2+), the Si as well as the H content in wadsleyite decrease with increasing Fe3+ content, indicating an incorporation mechanism via substitution into the metal (Me = Mg2+ and Fe2+) and Si sites with a ratio of 5/3 for (Fe3++H+):Me and of 5/1 for (Fe3++H+):Si, similarly as in the dry system. Thus, coupled substitution of Fe3+ and H+ does not affect the incorporation mechanism of Fe3+, but does affect the location of H+, which is partly incorporated at tetrahedral edges forming [FeSi′-(OH)o*]X neutral defects substituting for Si. In this model 25% of the ferric iron occupies the tetrahedral sites.
ISSN: 0003-004X

hal-00758071
https://hal.archives-ouvertes.fr/hal-00758071
DOI : 10.2138/am.2012.3869

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The timing of E–W extension of the Tibetan plateau provides a test of mechanical models of the geodynamic evolution of the India–Asia convergence zone. In this work we focus on the Kung Co half graben (Southern Tibet, China), bounded by an active N–S normal fault with a minimum vertical offset of 1600 m. To estimate the onset of normal faulting we combined high and medium temperature (U–Pb, Ar/Ar) and low temperature ((U–Th)/He) thermochronometry of the Kung Co pluton, a two-mica granite of the northern Himalayan granitic belt that outcrop in the footwall of the fault. Biotite and muscovite Ar/Ar ages , are close from each other [not, vert, similar 16 Ma ± 0.2 (Ms) and not, vert, similar 15 ± 0.4 Ma (Bt)], which is typical of fast cooling. The zircon and apatite (U–Th)/He ages range from 11.3 to 9.6 Ma and 9.9 to 3.7 Ma respectively. These He ages are indicative of (1) fast initial cooling, from 11.3 to not, vert, similar 9 Ma, gradually decreasing with time and (2) a high geothermal gradient (not, vert, similar 400 °C/km), close to the surface at not, vert, similar 10 Ma. The Kung Co pluton was emplaced at about 22 Ma (U–Pb on zircon) at less than 10 km depth and 520–545 °C. Subsequent to its shallow emplacement, the pluton underwent fast thermal re-equilibration ending around 7.5 Ma, followed by a period of slow cooling caused either by the end of the thermal re-equilibration or by very slow exhumation (0.02–0.03 mm/yr) from not, vert, similar 7.5 Ma to at least 4 Ma. In either case the data suggest that the exhumation rate increased after 4 Ma. We infer this increase to be related to the initiation of the Kung Co normal fault. A critical examination of previously published data show that most not, vert, similar N–S Tibetan normal faults may have formed less than 5 Ma ago rather than in the Miocene as assumed by several authors. Such a young age implies that E–W extension is not related to the Neogene South Tibetan magmatism (25 to 8 Ma). Consequently, models relating E–W extension to magmatism, such as convective removal of the lower lithosphere, may be inappropriate. We rather think that this extension is related with local accommodation of boundary forces and displacements.
ISSN: 0012-821X

hal-00311791
https://hal.archives-ouvertes.fr/hal-00311791
DOI : 10.1016/j.epsl.2007.01.029

Éditeur(s) : HAL CCSD
Résumé : Due to their phylogenetic position outside from Bilateria, cnidarians and ctenophores are key phyla to understanding the origin and early evolution of molecular mechanisms, cell types, or body plan features at the level of Metazoa. Unlike other non-bilaterian phyla (sponges and placozoans), they possess neurons and muscle cells. The first part of my work relates to the problem of the origin of the metazoan nervous system. Recent studies have suggested a dual origin for nerve cells, with ctenophore neurons having emerged independently from those of cnidarians and bilaterians. This hypothesis relies on phylogenomic analyses supporting ctenophores as sister-group to all other metazoans, and on the purported absence in ctenophores of almost all well-known neuro-transmission systems, including the cholinergic system. Refuting this claim, I present substantial evidence in favour of acetylcholine (Ach) being used in the ctenophore Pleurobrachia pileus as an extra-cellular messenger, including within the nervous system. This conclusion arises from the conjunction of multiple approaches at the molecular scale (orthology analyses, Ach immuno-localisation, gene in situ hybridisation), at the cellular scale (calcium imaging on muscle cells exposed to Ach) and at the organism scale (pharmacological treatments with an Ach analogue and Ach antagonists). In the second part of my thesis, I address the conservation of molecular mechanisms involved in the control of cellular proliferation. Notably, the Hippo pathway is known for its role in bilaterians in the negative control of cellular proliferation. I show that components of this pathway are conserved in Pleurobrachia pileus and in Clytia hemisphaerica and that the nuclear vs. cytoplasmic localisation of the transcriptional co-factor Yorkie is correlated to the extent of proliferation within C. hemisphaerica tissues. Finally, RNAseq differential gene expression analyses along a cellular conveyor belt of the C. hemisphaerica medusa suggests a tendency for conservation of function among a set of genes whose mammalian orthologues have documented roles in the arrest of cellular proliferation.
Les Cnidaires et les Cténaires sont deux embranchements extérieurs aux Bilatériens qui, de par leur position phylogénétique, constituent des modèles d'étude cruciaux pour comprendre l'origine et l'évolution de mécanismes moléculaires ou encore de types cellulaires à grande échelle chez les Métazoaires. Ils sont les deux seuls embranchements non-Bilatériens à posséder des cellules nerveuses ainsi que des cellules musculaires. La première partie de mon travail de thèse s'inscrit dans le contexte de la compréhension de l'origine du système nerveux des Métazoaires. Des études récentes suggèrent une origine double du système nerveux ; ainsi celui des Cténaires aurait été acquis de manière convergente par rapport à celui des Cnidaires et des Bilatériens. Cela repose sur des données récentes de phylogénomique proposant les Cténaires en tant que groupe-frère de tous les autres Métazoaires et sur l'absence supposée chez les Cténaires de quasiment tous les systèmes de neurotransmission connus y compris le système cholinergique. A l'encontre de ces hypothèses, j'ai pu mettre en évidence l'existence d'un système cholinergique chez le Cténaire Pleurobrachia pileus ainsi que son étroite association avec le système nerveux. Cette conclusion repose sur une multiplicité d'approches à l'échelle moléculaire (analyses d'orthologie, immunolocalisation, hybridations in situ), cellulaire (imagerie calcique) et de l'organisme (approche pharmacologique). Dans la seconde partie de ma thèse, j'aborde la question de la conservation des mécanismes moléculaires impliqués dans le contrôle de la prolifération cellulaire à l'échelle des Métazoaires. J'ai pu mettre en évidence la conservation des acteurs.
https://tel.archives-ouvertes.fr/tel-01633223

NNT : 2015PA066629
tel-01633223
https://tel.archives-ouvertes.fr/tel-01633223
https://tel.archives-ouvertes.fr/tel-01633223v2/document
https://tel.archives-ouvertes.fr/tel-01633223/file/2015PA066629.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The brain of the adult teleost fish exhibits intense neurogenic activity and an outstanding capability for brain repair. Remarkably, the brain estrogen-synthesizing enzyme, aromatase B, is strongly expressed, particularly in adult fishes, in radial glial cells, which act as progenitors. Using zebrafish, we tested the hypothesis that estrogens affect adult neurogenesis and brain regeneration by modulating the neurogenic activity of radial glial cells. To investigate this, the estrogenic environment was modified through inhibition of aromatase activity, blockade of nuclear estrogen receptors, or estrogenic treatments. Estrogens significantly decreased cell proliferation and migration at the olfactory bulbs/telencephalon junction and in the mediobasal hypothalamus. It also appears that cell survival is reduced at the olfactory bulbs/telencephalon junction. We also developed a model of telencephalic lesion to assess the role of aromatase and estrogens in brain repair. Proliferation increased rapidly immediately after the lesion in the parenchyma of the injured telencephalon, while proliferation at the ventricular surface appeared after 48 h and peaked at 7 days. At this time, most proliferative cells express Sox2, however, none of these Sox2 positive cells correspond to aromatase B-positive radial glial cells. Interestingly, aromatase B expression was significantly reduced 48 h and 7 days after the injury, but surprisingly, at 72 h after lesion, aromatase B expression appeared de novo expressed in parenchyma cells, suggesting a role for this ectopic expression of aromatase in brain repair mechanisms. Altogether these data suggest that estrogens modulate adult, but not reparative neurogenesis, in zebrafish.
ISSN: 0018-506X

inserm-00831715
http://www.hal.inserm.fr/inserm-00831715
DOI : 10.1016/j.yhbeh.2012.04.003
PUBMED : 22521210

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Orogenic lherzolites exhibit a specific (although reproducible) platinum-group element signature characterized by slight positive deviations of Pd/Ir, Rh/Ir and Ru/Ir ratios from the canonical chondritic model. Such a signature was alternatively considered to be a compositional feature of the primitive upper mantle or resulting from sulfide melt addition by refertilisation reactions in the continental lithosphere. To shed additional light on this conundrum, the distribution of PGE in FON B 93, an unserpentinized, fertile (3.24% Al2O3) orogenic lherzolite (French Pyrenees) used as in-house standard by our group, has been studied to different scales, from the bulk rock to trace minerals. In addition to new ICPMS analyses after separation into Nis and Te coprecipitation, its whole-rock PGE concentrations were redetermined by three different laboratories using very precise ID-ICP-MS methods after digestion of the sample in Carius tube at T=250 degrees C and 320 degrees C or in high-pressure asher (HPA-S). The four methods produce reproducible Ru, Rh and Pd contents (7.1 +/- 0.18 ppb; 1.43 +/- 0.05 ppb; 7.1 +/- 0.30 ppb) whereas the non-ID NiS-fire assay method underestimates the Os and Ir concentrations by c.a. 10 and 15% compared to ID-ICP-MS analyses (4.40 +/- 0.07 and 4.00 +/- 0.17 ppb, respectively). Platinum was the most difficult to analyse. If performed on powder aliquots smaller than 3 g, the ID-ICP-MS analyses generate strong nugget effects while the non-ID NiS-fire assay method yields statistically lower (but highly reproducible) Pt concentrations (6.92 +/- 0.26 ppb). These features reflect the strong partitioning of Pt into trace phases that SEM and laser ablation-ICP-MS analyses on thin sections identify as both high-temperature Pt-Ir-Os alloys and Pt-(Pd) tellurides of likely subsolidus origin; ten to fifteen grains ranging in maximum dimension from a few micrometres to a few hundreds of nanometers, were identified by standard polished thin section. LA-ICP-MS data on base metal sulfides (25 grains analysed), coupled with the whole-rock S concentration (277 +/- 10 ppm) and modal composition of the BMS (90% pentlandite+accessory pyrite and secondary pyrrhotite + 10% chalcopyrite) allowed the contribution of the BMS phase to the PGE budget of FON B 93 to be estimated. Except Pt that exhibits a 95% deficit in the BMS phase, the PGE concentrations measured by ID-ICP-MS can be balanced by BMS while Al-spinel is a negligible contributor, accounting for less than 0.5% of the Ru budget. The occurrence of Pt in trace phases may bias the whole-rock Pt concentrations because 1) mechanical collection of Pt-rich trace phases remains problematic with the Nis button, and 2) Pt-Ir-Os alloys may be prone to digestion problems in conventional Carius tube procedures. Since they could be stable at mantle depth, such refractory alloys that contain Os and Ir may also have enhanced the heavy PGEs/light PGEs fractionation. Our observations likely pertain to orogenic lherzolites as a whole because BMS assemblages in these mantle rocks record evolution at low sulfur fugacity, which prevents Pt-Ir-Os alloy from entering the Mss in the mantle; moreover, at subsolidus temperature, pentlandite, the major BMS, cannot accommodate 0 valence state Pt.
ISSN: 0009-2541

hal-00411486
https://hal.archives-ouvertes.fr/hal-00411486
DOI : 10.1016/j.chemgeo.2007.06.030

Éditeur(s) : Elsevier
Résumé : Clinoforms on modern shelves and slopes, as well as in ancient rock records, are widely recognized as a fundamental building element of continental margin growth. Regardless of their dominant lithology, clinoforms are composed of three geometric elements: topset, foreset and bottomset. Traditionally, much emphasis in the study of clinoforms was put on the geometry of the topset, viewed as the most energetic portion of a clinoform and studied to discern if aggradation was active rather than erosional truncation, and on the foreset, the area with the highest sediment accumulation rates. Here we focus on the factors forcing clinoforms to taper out and on the inferred mechanisms for bottomset creation. We base our analysis on muddy shelf clinoforms, a particular class of clinoforms that is typical of low-gradient settings and is characterized by a substantial component of shore-parallel sediment transport. This paper is based on a large dataset of CHIRP-sonar profiles, bathymetric and isopach maps of the Late Holocene clinoform on the Adriatic shelf, where integrated stratigraphic studies from sediment cores allow a very high (in some cases century-scale) chronological resolution. Knowledge on the dominant oceanographic regime affecting sediment dispersal and, ultimately, clinoform development, has been recently refined during the EuroSTRATAFORM collaboration. Muddy clinoforms are markedly three-dimensional features that cannot be entirely understood solely on two-dimensional shore normal sections. We suggest that this class of clinoform is advection dominated and that an increase in the energy regime at the toe of the foreset may prevent sediment from reaching beyond the transition to the bottomset region.
Continental Shelf Research (0278-4343) (Elsevier), 2007-02 , Vol. 27 , N. 3-4 , P. 506-525

Droits : 2006 Elsevier Ltd All rights reserved
http://archimer.ifremer.fr/doc/2007/publication-2409.pdf
DOI:10.1016/j.csr.2006.11.013
http://archimer.ifremer.fr/doc/00000/2409/

Éditeur(s) : HAL CCSD Royal Society
Résumé : International audience
The 2 465 177 bp genome of Sulfolobus islandicus LAL14/1, host of the model rudivirus SIRV2, was sequenced. Exhaustive comparative genomic analysis of S. islandicus LAL14/1 and the nine other completely sequenced S. islandicus strains isolated from Iceland, Russia and USA revealed a highly syntenic common core genome of approximately 2 Mb and a long hyperplastic region containing most of the strain-specific genes. In LAL14/1, the latter region is enriched in insertion sequences, CRISPR (clustered regularly interspaced short palindromic repeats), glycosyl transferase genes, toxin-antitoxin genes and MITE (miniature inverted-repeat transposable elements). The tRNA genes of LAL14/1 are preferential targets for the integration of mobile elements but clusters of atypical genes (CAG) are also integrated elsewhere in the genome. LAL14/1 carries five CRISPR loci with 10 per cent of spacers matching perfectly or imperfectly the genomes of archaeal viruses and plasmids found in the Icelandic hot springs. Strikingly, the CRISPR_2 region of LAL14/1 carries an unusually long 1.9 kb spacer interspersed between two repeat regions and displays a high similarity to pING1-like conjugative plasmids. Finally, we have developed a genetic system for S. islandicus LAL14/1 and created ΔpyrEF and ΔCRISPR_1 mutants using double cross-over and pop-in/pop-out approaches, respectively. Thus, LAL14/1 is a promising model to study virus-host interactions and the CRISPR/Cas defence mechanism in Archaea.
ISSN: 2046-6390

hal-00818894
https://hal.archives-ouvertes.fr/hal-00818894
DOI : 10.1098/rsob.130010
PUBMED : 23594878

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : We study the Africa-Iberia plate boundary in the vicinity of Gibraltar. Numerous models have been proposed for that region throughout the last decades, proposing mechanisms that range widely from continental delamination, convective removal, to subduction of oceanic lithosphere. To better constrain upper-mantle structure under the region, we study waveforms of P-waves that traverse the Alboran Sea region between Spain and Morocco. These show dispersive behavior, which, together with early arrival times, confirms the presence of an anomalous upper mantle structure under the Alboran Sea. The dispersion is consistent with that expected from subducted lithosphere. Waveforms of body waves therefore provide a way to better constrain the elusive mantle structure and dynamics of the Alboran Sea region
ISSN: 0094-8276

hal-00407670
https://hal.archives-ouvertes.fr/hal-00407670
DOI : 10.1029/2007GL030964

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Absolute earthquake hypocenter locations have been determined in the area offshore eastern Taiwan, at the Southernmost Ryukyu subduction zone. Location process is run within a 3D velocity model by combining the Taiwanese and neighboring Japanese networks and using the 3D MAXI technique. The study focuses on the most active seismic cluster in the Taiwan region that occurs in the forearc domain offshore eastern Taiwan. Earthquakes distribute mainly along 2 active planes. The first one aligns along the subduction interface and the second one, shallower affects the overriding margin. Focal mechanisms within the shallow group indicate that nodal planes are either compatible with high-angle back-thrusts or low-angle thrusts. The active seismic deformation exclusively indicates reverse faulting revealing that the forearc basement undergoes trench-perpendicular strong compression. By integrating the seismological image into the regional context, we favor the hypothesis in which the dense seismicity occurring offshore marks the activity of en-échelon high-angle reverse faults accommodating the uplift of a broken piece of Ryukyu Arc basement, called Hoping Basement Rise. The uplift is inferred to be caused by the subduction of an oceanic relief, either exotic block, seamount or oceanic crust sliver. Our favored solution satisfies the narrowness of epicenter's cluster along the Hoping Canyon, and the observation of high-angle active faults on seismic lines crossing the area. Furthermore, this solution is compatible with the active uplift of the Hoping Rise demonstrated from morphological and sedimentological data. We do not exclude the branching of the high-angle reverse faults system onto a splay fault connected with the subduction interface but further investigations are needed to map precisely the 3D distribution of active faults that break the margin.
ISSN: 0040-1951

hal-00407726
https://hal.archives-ouvertes.fr/hal-00407726
DOI : 10.1016/j.tecto.2007.11.018

Résumé : Cette these etudie les effets de la conversion de la foret tropicale en parcelles agricoles, sur les emissions de n2o par les sols. Ce travail est realise a l’echelle du cycle cultural sur le dispositif experimental de combi (littoral guyanais), a l’aide de mesures in situ et de simulations (modele noe) des flux de n2o. La foret tropicale a ete comparee a des parcelles de foret converties en terres agricoles par la methode ‘chop-and-mulch’. La methode de deforestation ‘chop-and-mulch’ associe coupe mecanique de la vegetation, broyage puis enfouissement des residus forestiers dans le sol. Les terres agricoles etaient soient des parcelles de prairie non paturee soient des parcelles cultivees (maïs fertilise/soja) conduites en semis conventionnel (semis apres travail du sol, sans plante de couverture) ou en semis direct (sans travail du sol, avec plantes de couverture).Les principaux resultats de cette etude sont : le sol de la foret tropicale de combi est un faible emetteur de n2o ; la conversion par la methode ‘chop-and-mulch’ de cette foret en prairie ne conduit pas a une augmentation significative des emissions de n2o entre le 19eme et le 31eme mois suivant la conversion ; la conversion de la foret en parcelles cultivees induit une augmentation significative des emissions de n2o due a la fertilisation et a la modification des parametres edaphiques (densite apparente, temperature, humidite volumique) ; la technique sans travail du sol n’engendre pas de flux de n2o significativement plus eleves que la technique avec travail du sol ; l’introduction du phenomene d’hysterese hydrique dans le modele noe presente un reel potentiel pour l’estimation des emissions de n2o in situ.
This study investigates the effects of the conversion of tropical forest to cultivation on soil n2o emissions. The study was carried out over a complete crop cycle at the experimental site combi (french guianese coast). Nitrous oxide fluxes were obtained in the field and by conducting simulations with the noe model. Undisturbed tropical rainforest was compared to rainforest that had been converted to agricultural land using the ‘chop-and-mulch’ method. The ‘chop-and-mulch’ method is a fire-free method used for vegetation clearing combining the mechanical felling of trees with the mulching of small vegetation. Agricultural land included either mowed grassland or soybean/fertilised maize crop rotation. For croplands the two cultivation practices employed were: conventional seeding (using an offset disc harrow, without cover plants) or direct seeding (no till, with cover plants).The main results of this study are: rainforest soil at combi produced low n2o emissions; rainforest converted to mowed grassland using the 'chop-and-mulch’ method did not lead to a significant increase in n2o emissions between the 19th and 31st months after conversion; the conversion of rainforest to croplands induced a significant increase in soil n2o emissions due to the application of fertiliser and the modification of soil parameters (bulk density, temperature, volumetric moisture); n2o emissions from agricultural practices with no-till were no higher than those produced by conventional agricultural practices using an offset disc harrow; and, the introduction of an hydric hysteresis into the noe model constitutes a promising improvement to estimate in situ n2o emissions.

http://www.theses.fr/2013AGUY0610/document

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
This study investigates three-dimensional flow modes of orogenic plateaus by means of physical modeling. Experiments consist of shortening two contiguous lithospheres of contrasting strength, one being a weak plateau-type lithosphere and the other a strong craton-type lithosphere. The lateral boundaries are either totally confined or allow escape toward a lateral foreland on one side. Two synconvergence flow regimes are distinguished, which are governed by the balance between the gravity potential and the strength of the plateau crust and the resistance of its lateral foreland. The first regime implies transversal (orogen-normal) injection of plateau lower crust into the collision zone as a result of confinement of the plateau by an increasingly stiffer lateral boundary. As a precursor mechanism to channel flow, transversal injection responds to downward thickening of the plateau crust that is forcedly extruded into the orogenic wedge. The second regime is that of collapse-driven lateral escape of the plateau. This regime is established after a threshold is attained in the interplate coupling in the collision zone, which allows the gravity potential of the plateau to overcome the resistance of its lateral boundary. Under the collapse-driven escape regime (orogen parallel), such as that governing Tibet during the last 13 Ma, most of the convergence in the plateau and the top and rear of the collisional wedge is transformed into lateral flow and extension.
ISSN: 0148-0227

hal-01229107
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01229107
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01229107/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01229107/file/2015JB012110_revised.pdf
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01229107/file/SupplementaryMaterial_final.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : A combination of statistical studies on present-day subduction zones and three-dimensional (3D) laboratory models is performed with the aim to clarify the way that plate kinematics control the geometry of the slab and the overriding plate deformation in subduction zones. In 3D laboratory models, the analogue of a two layer linearly viscous lithosphere–upper mantle system is achieved by means of silicon putty glucose syrup tank experiment. The subducting and overriding plate velocities are systematically changed by exploring the variability field of natural plate kinematics. Both statistical and modelling approaches recognize the importance of overriding plate motion on subduction process behavior: (1) trenches migrate at a rate close to the overriding plate motion, but always move slower than the overriding plates. The mechanism at work is a direct consequence of “slab anchoring” opposed by both lithosphere and mantle viscous resistance and is responsible for overriding plate deformation and slab geometry variability. (2) An overriding plate shortens when the overriding plate moves toward the trench and conditions that are favourable for overriding plate extension are created when the overriding plate moves away from the trench. (3) Shallow and steep dips are found if the overriding plate moves toward and away from the trench, respectively.
ISSN: 0012-821X

hal-00406598
https://hal.archives-ouvertes.fr/hal-00406598
DOI : 10.1016/j.epsl.2007.02.004

Éditeur(s) : HAL CCSD Endocrine Society
Résumé : International audience
The Developmental Origins of Health and Disease (DOHaD) paradigm is one of the most rapidly expanding areas of biomedical research. Environmental stressors that can impact on DOHaD encompass a variety of environmental and occupational hazards as well as deficiency and oversupply of nutrients and energy. They can disrupt early developmental processes and lead to increased susceptibility to disease/dysfunctions later in life. Presentations at the fourth Conference on Prenatal Programming and Toxicity in Boston, in October 2014, provided important insights and led to new recommendations for research and public health action. The conference highlighted vulnerable exposure windows that can occur as early as the preconception period and epigenetics as a major mechanism than can lead to disadvantageous "reprogramming" of the genome, thereby potentially resulting in transgenerational effects. Stem cells can also be targets of environmental stressors, thus paving another way for effects that may last a lifetime. Current testing paradigms do not allow proper characterization of risk factors and their interactions. Thus, relevant exposure levels and combinations for testing must be identified from human exposure situations and outcome assessments. Testing of potential underpinning mechanisms and biomarker development require laboratory animal models and in vitro approaches. Only few large-scale birth cohorts exist, and collaboration between birth cohorts on a global scale should be facilitated. DOHaD-based research has a crucial role in establishing factors leading to detrimental outcomes and developing early preventative/remediation strategies to combat these risks
ISSN: 0013-7227

hal-01187409
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187409
DOI : 10.1210/EN.2015-1350
PUBMED : 26241067

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The late Carboniferous accretionary system of the South Tianshan orogen (North-Western China) underwent complex structural and polymetamorphic evolution. Combined petrological, geochronological and microstructural analysis of (ultra)high-pressure (UHP) metabasites (eclogites and blueschists) enclosed in metapelites show a relict coarse-grained eclogitic fabric S2 surrounded by a dominant fine-grained eclogite and blueschist facies retrograde fabric S2. The S2 fabric is reworked by upright folds F3 that are responsible for a major shortening of the whole accretionary system. For both the eclogite and blueschist, peak and retrograde P–T conditions have been thermodynamically constrained at 25–26 kbar and 425–500 °C and 10–13 kbar and 500−550 °C respectively, suggesting a shared exhumation history. The garnet-whole rock-amphibole isochron in the blueschist yielded Lu–Hf and Sm–Nd ages of 326.0 ± 2.9 Ma and 318.4 ± 3.9 Ma respectively, interpreted to date the prograde to peak metamorphic assemblage. The retrograde path of the eclogite is characterized by heterogeneous omphacite recrystallization into a mylonitic fine-grained matrix and crystallization of blue amphibole. Microstructures in both pristine porphyroclastic and recrystallized fine-grained domains in the eclogite indicate a gradual evolution from constriction-dominated (L>S-type) to flattening-dominated (S>L-type) type of deformation, increase of fabric intensity reflected by gradually growing M-indexes and the development of lattice preferred orientation (LPO) typical for dislocation creep under slightly hydrated conditions. Recrystallization of the matrix in the blueschist is homogeneous, which indicates a matrix dominated channel flow during exhumation. These LPOs evolutions suggest a significant mechanical coupling with the upper plate concomitant with oroclinal bending of the Kazakh orocline. Lock up of Kazakh orocline is responsible for further stress increase resulting in horizontal shortening of South Tianshan accretionary wedge and development of D3 upright folding and steepening of the whole sequence.
ISSN: 1342-937X

hal-01481263
https://hal.archives-ouvertes.fr/hal-01481263
DOI : 10.1016/j.gr.2016.07.007

Éditeur(s) : HAL CCSD Botanical Society of America
Résumé :  
International audience
The different hypotheses about buttress function and formation mainly involve mechanical theory. Forces were applied to two trees of Sloanea spp., a tropical genus that develops typical thin buttresses, and the three-dimensional strains were measured at different parts of the trunk base. Risks of failure were greater on the buttress sides, where shear and tangential stresses are greater, not on the ridges, in spite of high longitudinal (parallel to the grain) stresses. A simple beam model, computed from the second moment of area of digitized cross sections, is consistent with longitudinal strain variations but cannot predict accurately variations with height. Patterns of longitudinal strain variation along ridges are very different in the two individuals, owing to a pronounced lateral curvature in one specimen. The constant stress hypothesis is discussed based on these results. Without chronological data during the development of the tree, it cannot be proved that buttress formation is activated by stress or strain.
ISSN: 0002-9122

hal-01032155
https://hal.archives-ouvertes.fr/hal-01032155
https://hal.archives-ouvertes.fr/hal-01032155/document
https://hal.archives-ouvertes.fr/hal-01032155/file/Biomechanics_buttressed_trees_Clair_al_2003.pdf
DOI : 10.3732/ajb.90.9.1349