Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Advances in groundwater storage monitoring are crucial for water resource management and hydrological processes understanding. The evaluation of water storage changes (WSC) often involve point measurements (observation wells, moisture probes, etc.), which may be inappropriate in heterogeneous media. Over the past few years, there has been an increasing interest in the use of gravimetry for hydrological studies. In the framework of the GHYRAF (Gravity and Hydrology inAfrica) project, 3 yr of repeated absolute gravity measurements using a FG5-type gravimeter have been undertaken at Nalohou, a Sudanian site in northern Benin. Hydrological data are collected within the long-term observing system AMMA-Catch. Once corrected for solid earth tides, ocean loading, air pressure effects, polar motion contribution and non-local hydrology, seasonal gravity variations reach up to 11 μGal, equivalent to a WSC of 260-mm thick infinite layer of water. Absolute temporal gravity data are compared to WSC deduced from neutron probe and water-table variations through a direct modelling approach. First, we use neutronic measurements available for the whole vertical profile where WSC occur (the vadose zone and a shallow unconfined aquifer). The RMSD between observed and modelled gravity variations is 1.61 μGal, which falls within the error bars of the absolute gravity data. Second, to acknowledge for the spatial variability of aquifer properties, we use a 2-D model for specific yield (Sy) derived from resistivity mapping and Magnetic Resonance Soundings (MRS). The latter provides a water content (θMRS) known to be higher than the specific yield. Hence, we scaled the 2-D model of θMRS with a single factor (α). WSC are calculated from water-table monitoring in the aquifer layer and neutronic measurements in the vadose layer. The value of α is obtained with aMonte-Carlo sampling approach, minimizing the RMSD between modelled and observed gravity variations. This leads to α = Sy/θMRS = 0.63 ± 0.15, close to what is found in the literature on the basis of pumping tests experiments, with a RMSD value of 0.94 μGal. This hydrogeophysical experiment is a first step towards the use of time-lapse gravity data as an integrative tool to monitor interannual WSC even in complicated subsurface distribution.
ISSN: 0956-540X

hal-00821181
https://hal.archives-ouvertes.fr/hal-00821181
DOI : 10.1093/gji/ggt146

Éditeur(s) : HAL CCSD Royal Meteorological Society
Résumé : Assessing the impact/adaptation of human activities on/to climate change is a key issue, especially in the tropics that concentrate major anthropogenic dynamics such as deforestation and nearly two-thirds of the planetary rainfall. However, this task is often made tough because human activities such as agricultural dynamics are usually analysed at local or regional scale whereas climate related studies are led at large to global scales due to a lack of reliable data, especially in the tropics. In this article we argue that the increased spatial resolution of remote sensing-based rainfall estimates enables assessing the spatiotemporal variability of rainfall regimes at regional and local scales, thus allowing fine analysis of the interactions with human activities. We processed Tropical Rainfall Measuring Mission (TRMM) 3B42 daily rainfall estimates over the state of Mato Grosso (southern Brazilian Amazon) for the 1998-2012 study period in order to compute rainfall metrics such as annual rainfall and duration, onset and end dates of the rainy season based on the Anomalous Accumulation methodology (at a 0.25◦ spatial resolution). We then crossed these metrics with agricultural maps (produced at a 250m spatial resolution) and proved that the adoption of intensive agricultural practices such as double cropping systems is partly the result of a strategy to adapt practices to local climatic conditions. Finally, we discuss how such results raise important issues regarding the sustainability of the agricultural development model in the Southern Amazon.
International Journal of Climatology

halshs-00910825
https://halshs.archives-ouvertes.fr/halshs-00910825
DOI : 10.1002/joc.3863

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The full numerical simulation of turbulent flows in the context of industrial applications remains a very challenging problem. One of the difficulties is the presence of a large number of interacting scales of different orders of magnitude, ranging from the macroscopic scale to the Kolmogorov dissipation scale. In order to better understand and simulate these interactions, new algorithms of incremental type have recently been introduced, stemming from the theory of infinite-dimensional dynamical systems (see, e.g., the algorithms of Foias, Jolly et al. (1988), Foias, Manley and Temam (1988), Laminie et al. (1993, 1994), Marion and Temam (1989, 1990), and Temam (1990)). These algorithms are based on decompositions of the unknown functions into a large- and a small-scale component, one of the underlying ideas being to approximate the corresponding attractor. In the context of finite element methods, the decomposition of a solution into small- and large-scale components appears when we consider hierarchical bases (Yserentant, 1986; Zienkiewicz et al., 1982). In the present article we derive several estimates of the size of the structures for the linear and nonlinear terms which correspond to interactions of different hierarchical components of the velocity field, and also their time variation. The one-step time variation of these terms can be smaller than the expected accuracy of the computation. Using this remark, we implement an adaptive spatial and temporal multilevel algorithm which treats differently the small- and large-scale components of the flow. We derive several a priori estimates in order to study the perturbation introduced into the approximated equations. All the interaction terms between small- and large-scale structures are frozen during several time steps. Finally, we implement the multilevel method in order to simulate a bidimensional flow described by the Burgers equations. We perform a parametric study of the procedure and its efficiency. The gain in CPU time is significant and the trajectories computed by our multi-scale method remain close to the trajectories obtained with the classical Galerkin method.
ISSN: 0168-9274

hal-00730710
https://hal.archives-ouvertes.fr/hal-00730710

Éditeur(s) : HAL CCSD
Résumé : International audience
The purpose of our study is to model a geothermal reservoir. When geothermal reservoir are assumed to be composed of pure water, the transfer of mass and energy is classically described by two balance equations: mass balance equation and the energy balance equation. In addition to those equations, fluid velocity ist classically given by the Darcy law while thermodynamic properties, inferred from theoretical or empirical equations of state, are used to close the mathematical system. Once this system is closed, there exist different solutions. The first one is to solve for pressure and temperature with a variable switch to saturation in the two-phase region (e.g. TOUGH2). The second one is to solve for pressure and enthalpy to increase stability of phase transition between single and two-phase states (e.g. Hydrotherm). We adopted the second option and chose te use a splitting method to get rid of the complexity of coupling equations and a finite volume method for the spatial discretization. Selecting object-oriented languages, we developed a multi-language framework, combining Python, Fortran and a C++ implementation of IAPWS (from the freesteam project) including the supercritical equations, in porous media velocity is given by Darcy law and to close the system physical properties are determined by the IAPWS-IF97 thermodynamic formulation. We resolve the equations in pressure and enthalpy instead of pressure and temperature in order to increase stability and to handle easier the passage from a single-phase to a two-phase system. We solve the system by using a splitting method - to get rid of the complexity of coupling equations - and a finite volume method. We offer some freedom to users thanks to the implementation of several methods like explicit or implicit Euler, Runge-Kutta or BDF2 for time solvers or GMRES and BICGSTAB for the linear solver. We can handle several boundary conditions like no-flow - describing a boundary which can not exchange matter with the exterior - or like a mixed-therm condition - a Dirichlet condition to the pressure and a Dirichlet or an outflow condition to the temperature in order to describe a recharge or a discharge zone - ... We're developing a multi-language framework, combining Python, Fortran and the C++ implementation of IAPWS (from the freesteam project). All these languages are object-oriented. We've applied this simulation model to the dogger in Paris, France, to several one-dimensional systems and a two-dimensional one made by Coumou with the CSMP++ platform. The dogger is a reservoir exploited to produce heat by pumping water at 70 and reinjecting it in the reservoir at 40. In the one-dimensional systems we wanted to observe the process of heat transfer from a higher temperature boundary to a smaller one in a high-energy domain. The last simulation shows the natural convection of water in a fault. For every simulation we compared the solutions we found with an other code (TOUGH2 or CSMP++) and they agreed. The next step will be to model the geothermal plant in Guadeloupe, West Indies. It's the only place in France - and in the West Indies so far - producing electricity with the earth power. The temperature can reach up to 1000 and the pressure range is around a few hundreds MPa. In some surface zones we can see two-phase water at atmospheric pressure. In the 1980s Bouillante was a laboratory for France. Since 1995 Bouillante has given 30GWh electricity a year to the Guadeloupeans.
PROCEEDINGS, Thirty-Ninth Workshop on Geothermal Reservoir Engineering
Stanford, United States

Droits : info:eu-repo/semantics/OpenAccess
hal-00944133
https://hal-brgm.archives-ouvertes.fr/hal-00944133
https://hal-brgm.archives-ouvertes.fr/hal-00944133/document
https://hal-brgm.archives-ouvertes.fr/hal-00944133/file/Copol.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
It is becoming clear that the female brain has an inherent plasticity that is expressed during reproduction. The changes that occur benefit the offspring, which in turn secures the survival of the mother’s genetic legacy. Thus, the onset of maternal motivation involves basic mechanisms from genetic expression profiles, to hormone release, to hormone-neuron interactions, all of which fundamentally change the neural architecture – and for a period of time that extends, interestingly, beyond the reproductive life of the female. Although multiple brain areas involved in maternal responses are discussed, this review focuses primarily on plasticity in the maternal hippocampus during pregnancy, the postpartum period and well into aging as it pertains to changes in cognition. In addition, the effects of prolonged and repeated stress on these dynamic responses are considered. The maternal brain is a marvel of directed change, extending into behaviors both obvious (infant-directed) and less obvious (predation, cognition). In sum, the far-reaching effects of reproduction on the female nervous system provide an opportunity to investigate neuroplasticity and behavioral flexibility in a natural mammalian model.
ISSN: 0018-506X

hal-01169791
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791/file/Neuroplasticity%20In%20The%20Maternal%20Hippocampus_accepted.pdf
DOI : 10.1016/j.yhbeh.2015.06.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Mapping forest aboveground biomass (AGB) has become an important task, particularly for the reporting of carbon stocks and changes. AGB can be mapped using synthetic aperture radar data (SAR) or passive optical data. However, these data are insensitive to high AGB levels (>150 Mg/ha, and >300 Mg/ha for P-band), which are commonly found in tropical forests. Studies have mapped the rough variations in AGB by combining optical and environmental data at regional and global scales. Nevertheless, these maps cannot represent local variations in AGB in tropical forests. In this paper, we hypothesize that the problem of misrepresenting local variations in AGB and AGB estimation with good precision occurs because of both methodological limits (signal saturation or dilution bias) and a lack of adequate calibration data in this range of AGB values. We test this hypothesis by developing a calibrated regression model to predict variations in high AGB values (mean >300 Mg/ha) in French Guiana by a methodological approach for spatial extrapolation with data from the optical geoscience laser altimeter system (GLAS), forest inventories, radar, optics, and environmental variables for spatial inter-and extrapolation. Given their higher point count, GLAS data allow a wider coverage of AGB values. We find that the metrics from GLAS footprints are correlated with field AGB estimations (R 2 =0.54, RMSE=48.3 Mg/ha) with no bias for high values. First, predictive models, including remote-sensing, environmental variables and spatial correlation functions, allow us to obtain "wall-to-wall" AGB maps over French Guiana with an RMSE for the in situ AGB estimates of ~51 Mg/ha and R²=0.48 at a 1-km grid size. We conclude that a calibrated regression model based on GLAS with dependent environmental data can produce good AGB predictions even for high AGB values if the calibration data fit the AGB range. We also demonstrate that small temporal and spatial mismatches between field data and GLAS footprints are not a problem for regional and global calibrated regression models because field data aim to predict large and deep tendencies in AGB variations from environmental gradients and do not aim to represent high but stochastic and temporally limited variations from forest dynamics. Thus, we advocate including a greater variety of data, even if less precise and shifted, to better represent high AGB values in global models and to improve the fitting of these models for high values.
ISSN: 0303-2434

Droits : http://creativecommons.org/licenses/by/
hal-01381116
https://hal.archives-ouvertes.fr/hal-01381116
https://hal.archives-ouvertes.fr/hal-01381116/document
https://hal.archives-ouvertes.fr/hal-01381116/file/Fayad2016a.pdf
DOI : 10.1016/j.jag.2016.07.015

Éditeur(s) : HAL CCSD
Résumé :  
For a comprehensive evaluation of human influences on the genetic system, the simulation model EGO-GENE was developed. The model combines population genetic and population dynamic processes with forest growth models. The dynamics of genetic structures (single locus and multilocus genotypes up to 200 loci) can be simulated. Spatial and temporal genetic dynamics are included in the model. Overlapping or separated generations can be created and different modes of mating systems can be implemented. The model can be run with empirical and fictitious input data. The simulated genetic structures can be directly analysed with established genetic analysis programmes. An example demonstrates the use of the model far validation of interactions among components of the mating system. Another example demonstrates the applicability of the model in decision-making for seed sampling strategies. The genetic differences between the adult trees and the harvested seeds and the danger of genetic drift regarding to different seed sampling strategies are investigated by use of the genetic distance and the reproductively effective population size.
Silvae genetica

hal-01032083
https://hal.archives-ouvertes.fr/hal-01032083

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The exchanges of carbon, water and energy between the atmosphere and the Amazon basin have global implications for the current and future climate. Here, the global atmospheric inversion system of the Monitoring of Atmospheric Composition and Climate (MACC) service is used to study the seasonal and interannual variations of biogenic CO 2 fluxes in Amazonia during the period 2002–2010. The system assimilated surface measurements of atmospheric CO 2 mole fractions made at more than 100 sites over the globe into an atmospheric transport model. The present study adds measurements from four surface stations located in tropical South America, a region poorly covered by CO 2 observations. The estimates of net ecosystem exchange (NEE) optimized by the inversion are compared to an independent estimate of NEE upscaled from eddy-covariance flux measurements in Amazonia. They are also qualitatively evaluated against reports on the seasonal and interannual variations of the land sink in South America from the scientific literature. We attempt at assessing the impact on NEE of the strong droughts in 2005 and 2010 (due to severe and longer-than-usual dry seasons) and the extreme rainfall conditions registered in 2009. The spatial variations of the seasonal and in-terannual variability of optimized NEE are also investigated. While the inversion supports the assumption of strong spatial heterogeneity of these variations, the results reveal critical limitations of the coarse-resolution transport model, the surface observation network in South America during the recent years and the present knowledge of modelling uncertainties in South America that prevent our inversion from capturing the seasonal patterns of fluxes across Amazonia. However, some patterns from the inversion seem consistent with the anomaly of moisture conditions in 2009.
ISSN: 1680-7316

hal-01557375
https://hal.univ-lorraine.fr/hal-01557375
https://hal.univ-lorraine.fr/hal-01557375/document
https://hal.univ-lorraine.fr/hal-01557375/file/acp-15-8423-2015.pdf
DOI : 10.5194/acp-15-8423-2015-supplement

Éditeur(s) : Gauthier-Villars
Résumé : Fish communities from two lagoon ecosystems, Ria Formosa (Portugal) and Grand Cul-de-Sac Marin (Guadeloupe), show interesting similarities of spatial and temporal organization. On the temporal scale, three community changes are observed in both systems, corresponding to massive arrivals and/or departures of migratory species. However, these migrations are more conspicuous in the Ria Formosa than in the Grand Cul-de-Sac Marin. On a spatial scale, the community structure is also largely determined by migratory species, whose abundance is a factor of homogenization. This is clearly observed in Ria Formosa, where the lagoon selection applies on a regional scale. Conversely, the community of sedentary fish identifies remarkable stations affected by chronic aggressions such as tourism or pollution. An explicative analysis, comprising a discriminant analysis and multiple regressions was realized on the data collected in the Grand Cul-de-Sac Marin. This analysis made it possible to determine the important environmental descriptors in the two complementary processes involved in recruitment: migrant availability, which determines the temporal organization of the fish assemblage. These migrations are explained by water temperature and salinity, two descriptors controlled by climatic conditions; the settlement process, which determines the spatial organization of the fish assemblage. This is explained by habitat descriptors such as visibility and turtlegrass blade length, or trophic descriptors, such as primary production, zooplankton density or nitrate concentration.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 3 , P. 291-301

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21056/18682.pdf
http://archimer.ifremer.fr/doc/00099/21056/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In petroleum industry, the difference between pore pressure (Pp) and minimum horizontal stress Sh (termed the seal or retention capacity) is of major consideration because it is often assumed to represent how close a system is to hydraulic failure and thus the maximum hydrocarbon column height that can be maintained. While Sh and Pp are often considered to be independent parameters, several studies in the last decade have demonstrated that Sh and Pp are in fact coupled. However, the nature of this coupling relationship remains poorly understood. In this paper, we explore the influences of the spatial pore pressure distribution on Sh/Pp coupling and then on failure pressure predictions and trap integrity evaluation. With analytical models, we predict the fluid pressure sustainable within a reservoir before failure of its overpressured shale cover. We verify our analytical predictions with experiments involving analogue materials and fluids. We show that hydraulic fracturing and seal breach occur for fluid pressure greater than it would be expected from conventional retention capacity. This can be explained by the impact of the fluid overpressure field in the overburden and the pressure diffusion around the reservoir on the principal stresses. We calculate that supralithostatic pressure could locally be reached in overpressured covers. We also define the retention capacity of a cover (RC) surrounding a fluid source or reservoir as the difference between the failure pressure and the fluid overpressure prevailing in shale at the same depth. In response to a localized fluid pressure rise, we show that the retention capacity does not only depend on the pore fluid overpressure of the overburden but also on the tensile strength of the cover, its Poisson's ratio, and the depth and width of the fluid source.
ISSN: 0264-8172

hal-00590497
https://hal.archives-ouvertes.fr/hal-00590497
DOI : 10.1016/j.marpetgeo.2010.08.007

Éditeur(s) : ESA Publication
Résumé : Satellite remote sensing has emerged as an essential and necessary observing system to acquire global information about the state of the ocean. Complemented with in situ observing networks, the ultimate goals are to be able to make accurate estimates of selected key sets of geophysical variables, with the intention of either making operational predictions across time and spatial boundaries, or advancing fundamental knowledge through development of empirical relationships and theoretical models. For satellite oceanography, improvements are then constantly being sought in our understandings of the geophysical processes, the sensor physics, the electromagnetic and microwave properties and interactions at the complex air-sea interface. Challenges appear as unlimited as the variety of sea surface dynamics and boundary layer meteorological conditions with their broad range of spatial and temporal scales across the globe. To face these challenges, numerous efforts took places over the passed decade to build an ever-increasing quality, quantity, duration and integration of ocean observations. In parallel, simulation capabilities largely improved. All these efforts are then all critically calling for improved methodologies to better structure the wealth of information that is made readily accessible. This latter aspect is a very demanding new component for future multidisciplinary scientific research. Major innovations to consolidate sensor data repositories, to automate tailored queries, to extract, reveal and quantify relationships will then closely associate computer science developments and applied statistics with comprehensive theoretical and experimental thematic studies.
Proceedings of OceanObs'09: Sustained Ocean Observations and Information for Society (ESA Publication), 2010

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00029/14046/11241.pdf
DOI:10.5270/OceanObs09.pp.12
http://archimer.ifremer.fr/doc/00029/14046/

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : Approximately 4,000 petroleum (oil and gas) platforms exist in the northern Gulf of Mexico and form one of the world's most extensive de facto artificial reef systems. Collectively, these structures may comprise one of the largest fad (Fish Aggregating Device) arrays in the world, attracting surface and midwater pelagic fishes. The diverse composition of pelagic fish fauna at ngom platforms is described and includes valued species such as Thunnus albacares, Thunnus atlanticus, Coryphaena hippurus, Acanthocybium solandri, Rachycentron canadum, Seriola dumerili, Scomberomorus cavalla, and Decapterus punctatus. Petroleum platforms influence pelagic fishery resources and are an important component of the Gulf's commercial and recreational fishing industries. Reviewed literature revealed a sparsity of fundamental knowledge of densities, temporal and spatial occurrence, and fishing effort/catch rates of pelagic fishes at platforms. The role of Gulf petroleum platforms "as fads" is examined, possible mechanisms for aggregation are reviewed, and a synopsis of the author's preliminary findings on life history aspects of A. solandri and R. canadum from platforms is presented. It is proposed that platforms provide opportunities for the study of pelagic species to better understand the life history, ecology, behaviour, and habitat requirements of pelagic fishery resources in the Gulf of Mexico.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15301/12633.pdf
http://archimer.ifremer.fr/doc/00042/15301/

Résumé : L’importance du rôle des petites agricultures dans les processus de sécurité alimentaire et de souveraineté alimentaire est de plus en plus reconnue. A Sainte-Lucie comme en Martinique, un certain nombre d’acteurs s’engagent officiellement pour une agriculture diversifiée s’appuyant sur les préceptes du développement durable. C’est en tenant compte de ce contexte qu’en partie l’idée de réaliser une étude sur la petite agriculture de Sainte-Lucie et de la Martinique a germé. Aussi, le présent travail se veut-il avant tout une contribution au diagnostic de la petite agriculture face à la modernisation des systèmes agricoles intensifs dans chacune de ces deux îles. Il s’agit de mettre à l’évidence les richesses et les insuffisances de cette petite agriculture, mais aussi les atouts et les contraintes de l’environnement. En grande partie elle prend appui sur le jardin créole, système agricole considéré par bien d’acteurs comme un fondement culturel et une base culturale. Dans chacune des deux îles, beaucoup de petits agriculteurs font de la biodiversité une composante primordiale de la gestion de leurs systèmes agricoles. Les enjeux visés ici portent sur la contribution d’une gestion optimale de cette biodiversité à la promotion des agrosystèmes paysans durables à différentes échelles spatio-temporelles. Dès lors, tout dépend des méthodes d’accompagnement des agriculteurs à mettre en œuvre. Va-t-on poursuivre avec des approches descendantes basées sur la logique de transfert ? Si non, le moment n’est-il pas venu de réunir les conditions pouvant permettre la mise en œuvre des véritables démarches de co-construction ?
The important role of small farmers in the process in food security and of food sovereignty is increasingly recognized. In St. Lucia as in Martinique, a number of actors officially committed to a diverse agriculture based on the precepts of sustainable development. It is in the light on this context that partially, the idea of a study on small holder St Lucia and Martinique germinated. Also, the present work is first and foremost a contribution to the diagnosis of small-scale agriculture to modernization of the intensive agricultural systems in each of these two islands. It is put clearly the richness and the inadequacies of this small scale-agriculture, but also the advantages and constraints of the environment. In large part it builds on the creole garden, agricultural system considered by many actors as a cultural foundation and a base of farming practices. In each of the two islands, many small farmers make biodiversity an essential component of management of their farm systems. The stakes referred here relate to the optimal management contribution of biodiversity to promote sustainable peasant agro-ecosystems at different spatial and temporal scales. Therefore, everything depends on farmer coaching methods to set up. Will we continue with down approaches based on logic of transfer ? Otherwise, isn’t time to create the conditions that could allow the development of real co-construction steps ?

http://www.theses.fr/2015AGUY0866/document

Éditeur(s) : Université de Bretagne Occidentale
Résumé : Several small pelagic fish species contribute remarkably to world catch. Their populations are, however, characterized by large biomass fluctuations strongly affecting fisheries. The fishing gears and methods used to capture small pelagics have evolved to exploit the highly developed shoaling behavior of these species. Hence, faced to modern fishing this gregarious behavior becomes a disadvantage for fish. Fish behavior may be affected by environmental conditions and by fishing, at the same time that behavior impacts fishing. In this study, we seek to characterize the aggregative systems of small pelagic fishes inhabiting the Bay of Biscay by analyzing "acoustic images", defined as the group of echoes (planktonic layers, shoals, isolated targets) detected on a transect section of a given length. We analyzed the species composition, the spatial distribution and the evolution over time of acoustic images. We also studied the hydrological conditions of the bay, as well as the small pelagics French fishery in order to look for correlations between hydrology, commercial catch and fish aggregation patterns observed by acoustics. We observed the same species or group of species forming different types of aggregation according to habitat. Conversely, the same type of aggregation, associated with a particular habitat, can be produced by different species. The most notorious change observed during the studied period relates to small clupeoids aggregations in the vicinity of the Gironde estuary, whose structure evolved toward a greater fragmentation of shoals (a large number of small size detections) since 2000. Concerning commercial catches, pelagic trawlers fishing in pairs mainly seek for anchovy in the coastal areas, single pelagic trawlers capture mackerel and horse mackerel in deeper waters while purse seiners target mostly sardine near their fishing ports. Because of the coarse spatial resolution of commercial fishing data and the effect of the application of an international fisheries agreement limiting the fishing activity of French pelagic trawlers during spring, only small correlations between captures and types of aggregation were observed.
La participation des petits poissons pélagiques dans les captures est remarquable. Leurs populations sont cependant caractérisées par des importantes fluctuations de biomasse, impactant fortement les pêcheries. Les méthodes et appareils de pêche utilisés pour capturer ces espèces ont évolué dans le sens d'exploiter le comportement grégaire très développé des petits pélagiques. Cette tendance à former de bancs devient alors désavantageuse pour le poisson face à la pêche moderne. Les conditions environnementales et la pêche peuvent affecter le comportement du poisson, en même temps que ce dernier est susceptible d'affecter l'activité halieutique. Le but de cette étude est de caractériser les systèmes agrégatifs des petits poissons pélagiques dans le golfe de Gascogne en étudiant des « images acoustiques », définies comme l'ensemble des échos (couches planctoniques, bancs, cibles isolées) détectés sur une section de radiale de longueur donnée. Nous analysons leur composition en espèces ainsi que leur distribution spatiale et leur évolution au cours du temps. Nous étudions aussi les conditions hydrologiques du golfe, ainsi que la pêcherie française de ces espèces afin de chercher des corrélations entre l'hydrologie, la capture commerciale et les types d'agrégations observés par acoustique. Nous avons observé qu'une espèce est capable de former des agrégations différentes en fonction de l'habitat, et inversement, le même type d'agrégation, associé à un habitat particulier, peut être produit par des espèces différentes. Le changement observé le plus évident concerne les agrégations de petits clupéiformes, dont la structure a évolué vers une plus grande fragmentation des détections (des petits bancs plus nombreux) depuis 2000. Par rapport à la pêche des professionnels, les chalutiers pélagiques en boeufs recherchent en priorité l'anchois dans la zone côtière, les pélagiques simples capturent le chinchard et le maquereau au large et les senneurs recherchent principalement la sardine à proximité des ports de pêche. À cause de la résolution spatiale trop sommaire des données de pêche et l'effet de l'application des accords internationaux limitant l'activité des chalutiers pélagiques au printemps, nous n'avons observé que peu des corrélations entre les captures et les types d'agrégation établis à partir de données issues des campagnes scientifiques.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/these-6083.pdf
http://archimer.ifremer.fr/doc/00000/6083/

Éditeur(s) : HAL CCSD
Résumé : International audience
—Managing spatial reservoirs of malaria infection plays a crucial role in effective disease control. In this paper, a reservoir of infection refers to one or more interconnected subpopulations that sustain the epidemic at the level of the metapopulation to which applying a (linear) control strategy suffices to eradicate the disease in the whole system. We propose a numerical method to explain the steps for identifying reservoirs of malaria infection within n connected regions with the explicit movement of human population from the previous theoretical results in order to design an efficient computational tool. Furthermore, we determine the minimal percentage (critical vaccination fraction) of susceptible individuals in the reservoirs that should be protected to eliminate malaria. The costs and cost-effectiveness of malaria control interventions were analysed considering two strategies of control. (i) protecting the minimal fraction of susceptible individual; (ii) protecting any fraction greater than the minimal fraction. Cost-effectiveness analysis shows that the less cost and more effective strategy is to vaccinate (or protect) the minimal fraction of susceptible human in the reservoir of infection to halt outbreak. A numerical example provides insight into the efficiency of this approach.
IAENG International Journal of Applied Mathematics

Droits : info:eu-repo/semantics/OpenAccess
hal-01683268
https://hal.univ-antilles.fr/hal-01683268
https://hal.univ-antilles.fr/hal-01683268/document
https://hal.univ-antilles.fr/hal-01683268/file/ZongoDorvilleGouba28Janvier2017.pdf

Éditeur(s) : IEEE
Résumé : Two approaches of ocean color data merging were tested and compared in the North and Equatorial Atlantic Basin: the weighted averaging and the objective analysis. The datasets used were the daily level-3 binned data of chlorophyll-a from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) and Moderate Resolution Imaging Spectroradiometer on the Aqua satellite over the year 2003, which is the first common full year of operation. Since they represent input for both approaches, matchups between the satellite and the in situ data from the SeaWiFS Bio-optical Archive and Storage System and the Atlantic Meridional Transect were first studied to compute a spatial map of the root mean-square error and of the bias. Because of the log distribution of the chlorophyll fields, each approach was applied to untransformed and log-transformed values. The application of the weighted averaging to log-transformed values does not show significant differences in comparison to its application to untransformed values. This is not the case, however, for the objective analysis that gives better results when applied to logtransformed values. Both approaches give combined chlorophyll data of equivalent quality, although the objective analysis could be improved with a better statistical characterization of noise and signal covariance. The main advantage of the objective analysis is its ability to interpolate in space (and time) by taking into account the characteristic scales of chlorophyll-a. As a result, the spatial coverage of the combined data is at least twice as large in the case of objective analysis than weighted averaging. OCR NOT CONTROLLED
IEEE (0196-2892) (IEEE), 2006-11 , Vol. 44 , N. 11 , P. 3436-3451

Droits : 2006 IEEE
http://archimer.ifremer.fr/doc/2006/publication-3631.pdf
DOI:10.1109/TGRS.2006.878441
http://archimer.ifremer.fr/doc/00000/3631/

Éditeur(s) : HAL CCSD
Résumé : International audience
Human spatial motions determine geographic social contacts that influence the way an information is spread on a population or a community. As mobility is a transverse dimension to social practices it is important to better understand its role. With the Eternal-Return model we propose, we simulate an artificial world populated by heterogeneous agents who differ in their mobility. We have chosen a multi-agent framework perspective for this simulation. We endow the agents with simple rules on how to move around the space and how to establish proximity-contacts. This allows to distinguish different kinds of mobile agents, from sedentary ones to travelers. To summarize the dynamics induced by mobility over time, we define the mobility-based Social Proximity Network as being the network of all distinct contacts between agents. Its properties give insight in the process of information spreading. We conduct simulations to understand how an information can be broadcast when agent-nodes are in motion.
IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining
Niagara falls, Canada

hal-00874344
https://hal.archives-ouvertes.fr/hal-00874344

Éditeur(s) : Oxford Univ Press Inc
Résumé : Since the transition from terrestrial to marine environments poses strong osmoregulatory and energetic challenges, temporal and spatial fluctuations in oceanic salinity might influence salt and water balance (and hence, body condition) in marine tetrapods. We assessed the effects of salinity on three species of sea snakes studied by mark-recapture in coral-reef habitats in the Neo-Caledonian Lagoon. These three species include one fully aquatic hydrophiine (Emydocephalus annulatus), one primarily aquatic laticaudine (Laticauda laticaudata), and one frequently terrestrial laticaudine (Laticauda saintgironsi). We explored how oceanic salinity affected the snakes' body condition across various temporal and spatial scales relevant to each species' ecology, using linear mixed models and multimodel inference. Mean annual salinity exerted a consistent and negative effect on the body condition of all three snake species. The most terrestrial taxon (L. saintgironsi) was sensitive to salinity over a short temporal scale, corresponding to the duration of a typical marine foraging trip for this species. In contrast, links between oceanic salinity and body condition in the fully aquatic E. annulatus and the highly aquatic L. laticaudata were strongest at a long-term (annual) scale. The sophisticated salt-excreting systems of sea snakes allow them to exploit marine environments, but do not completely overcome the osmoregulatory challenges posed by oceanic conditions. Future studies could usefully explore such effects in other secondarily marine taxa such as seabirds, turtles, and marine mammals.
Integrative And Comparative Biology (1540-7063) (Oxford Univ Press Inc), 2012-08 , Vol. 52 , N. 2 , P. 235-244

Droits : The Author 2012. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved.
http://archimer.ifremer.fr/doc/00089/20064/20739.pdf
DOI:10.1093/icb/ics081
http://archimer.ifremer.fr/doc/00089/20064/

Éditeur(s) : Elsevier
Résumé : In order to provide reliable scientific advice and support for fisheries management, it is necessary to evaluate the biological and economic sustainability of complex fisheries, such as multi-species multi-fleet fisheries. Existing policy-screening modelling tools are not fully suitable in this purpose due to either an over-simplified description of population dynamics, or due to the lack of consideration of economic aspects. In this paper, we present a package that enables quantitative bioeconomic assessment of management scenarios. Population dynamics is described through spatially- and seasonally-explicit models. Exploitation dynamics is characterized by several fishing activities with specific spatial and seasonal features, and practiced by several kinds of vessels with specific technical characteristics. Exploitation costs and revenues are considered at several levels: the fishing trip, the fishing unit (vessel and crew), and the vessel owner. The model is generic and can be used for different types of fisheries. A database is attached to the software for the storage and updating of information for each fishery. This includes the specification of model dimensions and of the parameters describing populations and exploitation. Several model assumptions regarding either population or exploitation may be adapted to suit a specific fishery. Both policies and corresponding fishers' response may be interactively specified through JAVA (TM) scripts. This version of ISIS-Fish allows for the calculation of biological and economic consequences of a range of policies, including conventional ones like catch and effort controls, and alternative policies such as marine protected areas. To facilitate policy-screening in a high-dimension parameter space, the software includes features, like interfaces for sensitivity analysis and simulation queues. (C) 2009 Elsevier B.V. All rights reserved.
Ecological Modelling (0304-3800) (Elsevier), 2009-04 , Vol. 220 , N. 7 , P. 1013-1033

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6782.pdf
DOI:10.1016/j.ecolmodel.2009.01.007
http://archimer.ifremer.fr/doc/00000/6782/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
1. The Before-After Control-Impact Paired Series (BACIPS) design distinguishes natural spatial and temporalvariability from variation induced by an environmental impact (or intervention) of interest. BACIPS is a powerfultool to derive inferences about interventions when classic experimental approaches (e.g. which rely on spatialreplicates and random assignment of treatments) are not feasible or desirable. Previously applied BACIPSdesigns generally assume that effects are sudden, constant and long-lived: that is, that systems exhibit ‘stepchanges’in response to interventions. However, complex ecological interactions or gradual interventions maycreate delayed and/or progressive responses, potentially impeding the reliability of classic (step-change) analyses.2. We propose a novel approach, the Progressive-Change BACIPS, which generalizes and expands the scope ofBACIPS analyses.We evaluate the relative performance of this approach using both simulated and real data thatexhibit step-change, linear, asymptotic and sigmoid responses following an intervention.We quantify the statisticalpower and accuracy of the Progressive-Change BACIPS under varying initial population densities, intensityof spatial sampling, effect sizes and number of sampling dates After the intervention.3. We show that Progressive-Change BACIPS identified the correct model among the set of candidate modelsunder most conditions and led to accurate estimates of the parameters that were used to generate the simulateddata. When data were sparse, and the dynamics complex, simpler (more parsimonious) models were favouredover the more complex models that actually generated the simulated data. Application of the Progressive-Change BACIPS to existing data sets from the literature led to strong support for specific models (over alternatives)and led to more specific inferences than possible under the classic BACIPS approach.4. The Progressive-Change BACIPS proposed here is more flexible than the original BACIPS formulationbecause the data are used to inform the form of the final model, rather than having the form of the modelimposed on the data. This leads to better estimates of the effects of environmental impacts and the time-scalesover which they operate. As a result, the Progressive-Change BACIPS should be applicable to a wide range ofstudies and should help improve investigation of time-dependent effects. R code to perform Progressive-ChangeBACIPS analysis is provided.
ISSN: 2041-210X

hal-01416668
https://hal-univ-perp.archives-ouvertes.fr/hal-01416668
DOI : 10.1111/2041-210X.12655