Éditeur(s) : Amer Meteorological Soc
Résumé : The Congo River has the second largest rate of flow in the world and is mainly responsible for the broad tongue of low-salinity water that is observed in the Gulf of Guinea. Despite their importance, near-equatorial river plumes have not been studied as thoroughly as midlatitude plumes and their dynamics remain unclear. Using both theory and idealized numerical experiments that reproduce the major characteristics of the region, the authors have investigated the dynamics of the Congo River plume and examine its sensitivity to different forcing mechanisms. It is found that near-equatorial plumes are more likely to be surface trapped than midlatitude plumes, and the importance of the effect in describing the strong offshore extent of the low-salinity tongue during most of the year is demonstrated. It is shown that the buoyant plume constrained by the geomorphology is subject to the pulling of nonlinear structures and wavelike equatorial dynamics. The wind is found to strengthen the intrinsic buoyancy-driven dynamics and impede the development of the coastal southward current, in coherence with observations.
Journal Of Physical Oceanography (0022-3670) (Amer Meteorological Soc), 2014-03 , Vol. 44 , N. 3 , P. 980-994

Droits : 2014 American Meteorological Society
http://archimer.ifremer.fr/doc/00187/29850/28298.pdf
DOI:10.1175/JPO-D-13-0132.1
http://archimer.ifremer.fr/doc/00187/29850/

Éditeur(s) : Elsevier
Résumé : High-resolution sedimentological and micropaleontological studies of several deep-sea cores retrieved from the levees of the Celtic and Armorican turbidite systems (Bay of Biscay - North Atlantic Ocean) allow the detection of the major oscillations of the British-Irish Ice Sheet (BIIS) and 'Fleuve Manche' palaeoriver discharges over the last 30,000 years, which were mainly triggered by climate changes. Between 30 and 20 cal ka, the turbiditic activity on the Celtic-Annorican margin was weak, contrasting with previous stratigraphic models which predicted a substantial increase of sediment supply during low sea-level stands. This low turbidite deposit frequency was most likely the result of a weak activity of the 'Fleuve Manche' palaeoriver and/or of a reduced seaward transfer of sediments from the shelf to the margin. However, two episodes of turbiditic activity increase were detected in the Celtic-Armorican margin, during Heinrich events (HE) 3 and 2. This strengthening of the turbiditic activity was triggered by the meltwater releases from European ice sheets and glaciers favouring the seaward transfer of subglacial material, at least via 'Fleuve Manche' palaeoriver. At around 20 cal ka, a significant increase of turbidite deposit frequency occurred as a response to the onset of the last deglaciation. The retreat of the European ice sheets and glaciers induced a substantial increase of the 'Fleuve Manche' palaeoriver discharges and seaward transfer of continentally-derived material into the Armorican turbidite system. The intensification of the turbiditic activity on the Celtic system was directly sustained by the widespread transport of subglacial sediments from the British-Irish Ice Sheet (BIIS) to the Celtic Sea via the Irish Sea Basin. A sudden reduction of turbiditic activity in the Armorican system, between ca. 19 and 18.3 cal ka, could have been triggered by the first well known abrupt sea-level rise ('meltwater pulse', at around 19 cal ka) favouring the trapping of sediment in the 'Fleuve Manche' palaeoriver valleys and the decrease of the seaward transfer of continentally-derived material. The maximum of turbiditic activity strengthening in the Celtic-Armorican margin, between ca. 18.3 and 17 cal ka, was induced by the decay of European ice sheets and glaciers producing the most extreme episode of the 'Fleuve Manche' palaeoriver runoff and a great seaward transfer of subglacial material into the Bay of Biscay, Between ca. 17.5 and 16 cal ka, the turbiditic activity significantly decreased in both Celtic and Armorican turbidite systems in response to a global re-advance of glaciers and ice sheets in Europe. The last episode of ice sheet retreat, between ca. 16 and 14 cal ka, is well expressed in the Celtic system by a new increase of the turbiditic activity. The major episode of sea-level rise at around 14 cal ka ('Meltwater Pulse 1A'), precluding the seaward transfer of sediments, induced the end of turbiditic activity in both the Celtic and the Armorican system. Although two main phases of global sea-level rise seem to have had an effect on the Celtic-Armorican margin, this work proposes the BUS retreat and associated riverine discharges as the main trigger mechanisms of the turbiditic activity in this region during the last 30,000 years.
Marine Geology (0025-3227) (Elsevier), 2008 , Vol. 247 , N. 1-2 , P. 84-103

Droits : 2008 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2008/publication-3729.pdf
DOI:10.1016/j.margeo.2007.08.006
http://archimer.ifremer.fr/doc/00000/3729/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The diffusion of titanium along with Ni, Co and Mn in pure synthetic forsterite has been studied as a function of temperature, oxygen fugacity, crystallographic orientation and chemical potentials in the four-component system MgO–SiO2–TiO2–TiO1·5. In over 100 different experimental conditions, no Ti diffusion profiles with the classical shape of the error function were observed. Instead, the profiles vary between ‘stepped’ at high fO2 (probably owing to diffusion on octahedral sites and trapping in tetrahedral sites), to hockey-stick shapes at low fO2 owing to concentration-dependent diffusion. The profile shapes vary systematically between these end-members according to oxygen fugacity. These profile shapes are also reproduced in experiments using natural San Carlos olivine. The change in profile shape is interpreted to be a function of valence-state change from Ti4+ to Ti3+, shown by a sigmoidal log fO2–diffusivity relationship. To distinguish between Ti4+ and Ti3+ in forsterite, a diffusion profile was also investigated using ‘hydroxylation spectroscopy’ whereby a crystal from a diffusion experiment was hydroxylated by annealing in an H2O-rich fluid at moderate pressure and temperature. The point defects associated with the added structural OH were then determined by infrared spectroscopy, providing evidence for the presence of Ti4+ and Ti3+ at intermediate oxygen fugacity. The transition from Ti4+ to Ti3+ occurs at considerably higher fO2 in these diffusion experiments than in equilibrium experiments in similar systems. Titanium diffusion, qualified using a mobility parameter (M), is fastest along the c-axis, at high activity of silica, low oxygen fugacity and high temperature. The rate of Ti diffusion is broadly similar to those of Mn, Ni and Co, and closer to published rates of Mg self-diffusion in olivine than Si self-diffusion. The observed Ti3+ and Ti4+ diffusion occurs on the M-sites. From statistical examination of the large Mn, Ni and Co diffusivity dataset, we determine that there is a 102/3 dependence of diffusion on aSiO2; the cations diffuse more rapidly at high aSiO2. In addition, diffusivity has a 10–1/8 dependence on fO2, suggested to be the result of increased concentration of loosely bound Ti3+–vacancy pairs, which enhance the mobility of other cations. This behaviour is likely to be present in natural systems where trivalent (e.g. Fe3+, Al3+, Cr3+) and divalent cations diffuse together. Consideration should be given to diffusive interference by highly charged, fast-moving cations when extracting time scales from frozen diffusion profiles.
ISSN: 0022-3530

hal-01531344
https://hal.archives-ouvertes.fr/hal-01531344
DOI : 10.1093/petrology/egw067

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We experimentally studied the predatory behavior of Polybia rejecta (Vespidae, Polistinae, Epiponini) towards 2-88 mm-long insects attracted to a UV light trap. Foragers, which began to hunt at 6:30, selected 4-14 mm-long prey insects. Prey detection by sight by hovering wasps was confirmed using decoys. After the wasps landed and walked along a sinuous path, prey were detected by contact or from a distance (1-3cm). This was followed by seizure, stinging (contrarily to most other known cases), prey manipulation and retrieval. Prey that flew off might be caught in flight. The prey load, representing 30.7% of a forager's weight, was optimized by capturing up to six small prey or two medium-sized prey successively (both of which might be consumed in situ). The foragers cut off the wings of larger prey or cut them into two pieces and returned to gather the second piece. The handling time increased exponentially with the weight of the prey. Partial loading (i.e., retrieving a load much inferior to the maximum possible) was likely related to social facilitation, a form of nest-based recruitment that was demonstrated through the experimental elimination of local enhancement by removing foragers (both mechanisms favor the exploitation of favorable patches).
ISSN: 0376-6357

hal-01533217
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01533217
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01533217/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01533217/file/Dejean%20et%20al.%20-%20The%20predatory%20behavior%20of%20the%20Neotropical%20social%20w.pdf
DOI : 10.1016/j.beproc.2017.05.011

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
A hybrid linear ion-trap Fourier-transform ion cyclotron resonance mass spectrometer was used for top-down characterization of the abundant human salivary Cystatins, including S, S1, S2, SA, SN, C, and D, using collisionally activated dissociation (CAD) after chromatographic purification of the native, disulfide intact proteins from saliva. Post-translational modifications and protein sequence polymorphisms arising from single nucleotide polymorphisms (SNPs) were assigned from precursor and product ion masses at a tolerance of 10 ppm allowing confident identification of individual intact mass tags. Cystatins S, S1, S2, SA and SN were cleaved of a N-terminal 20 amino-acid signal peptide, and Cystatin C a 26-residue peptide, to yield a generally conserved N-terminus. In contrast, Cystatin D isoforms with 24 and 28 amino-acid residue N-terminal truncations were found such that their N-termini were not conserved. Cystatin S1 was phosphorylated at Ser3, while S2 was phosphorylated at Ser1 and Ser3 of the mature protein, in agreement with previous work. Both Cystatin D isoforms carried the polymorphism C46R (SNP: rs1799841). The 14328 Da isoform of Cystatin SN previously assigned with polymorphism P31L due to a SNP (rs2070856) was found only in whole saliva. Parotid secretions contained no detectable Cystatins while whole saliva largely mirrored the contents of submandibular/sublingual (SMSL) secretions. Top-down high-resolution mass spectrometry is a powerful tool for the identification and characterization of potential protein biomarkers in saliva.
ISSN: 1044-0305

hal-00677483
https://hal.archives-ouvertes.fr/hal-00677483
DOI : 10.1016/j.jasms.2010.01.025

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Melting experiments were performed on a silica-rich peridotite composition at 10-17 GPa to determine majoritic garnet-melt partition coefficients (D) for major and trace elements. Our results show that D for many elements, including Na, Sc, Y and rare earth elements (REE), varies significantly with increasing pressure or proportion of majorite component. Lu and Sc become incompatible at 17 GPa, with D decreasing from 1.5 at 10 GPa to 0.9 at 17 GPa. As predicted from lattice strain, log D for isovalent cations entering the large site of majoritic garnet exhibits a near-parabolic dependence on ionic radius. Our data are used to refine a previously published predictive model for garnet-melt partitioning of trivalent cations, which suffered from a lack of calibration in the 10-20 GPa range. Our results suggest that Archean Al-depleted komatiites from Barberton (South Africa) may have been generated by partial melting of dry peridotite at depths between 200 and 400 km. We also speculate that transition zone diamonds from Kankan (Guinea), which contain inclusions of majoritic garnet, may have formed from the partial reduction of CO2-rich magmas that subsequently transported them to the surface. This hypothesis would provide an explanation for the REE patterns of majoritic garnet trapped within these diamonds, including Eu anomalies. Finally, we show that segregation of majoritic garnet-bearing cumulates during crystallisation of a deep Martian magma ocean could lead to a variety of Lu/Hf and Sm/Nd ratios depending on pressure, leading to a range of ε143Nd and ε176Hf isotope signatures for potential mantle sources of Martian rocks.
ISSN: 0024-4937

hal-00767567
https://hal.archives-ouvertes.fr/hal-00767567
DOI : 10.1016/j.lithos.2012.06.013

Éditeur(s) : HAL CCSD Thai Society of Higher Education Institutes on Environment
Résumé : International audience
Due to the high level of endemic species that they support and the high threats they are facing, such as unsustainable limestone quarrying, hunting and urbanization, limestone karsts are recognized as biodiversity hotspots needing urgent protection. The first aim of our study was to investigate the mammal rodent diversity of Thai limestone karsts. Our second aim was to examine the diversity at a finer scale than the species level (intraspecific biodiversity) using phylogeographic approaches. Therefore, we studied the phylogeographic structure of a threatened rodent, endemic to limestone karsts of Thailand, the Murinae Leopoldamys neilli. We sampled 76 limestone karsts in whole Thailand and live-trapped 444 rodents including 115 Leopoldamys neilli. Our study revealed an important rodent diversity in Thai limestone karsts. Besides endemic rodent species, karsts also host typical forest species to which they provide forest refugia in deforested regions. At the intraspecific level, our study revealed an unexpected high level of genetic differentiation within the rodent species L. neilli. As each limestone area of Thailand is characterized by a particular genetic lineage of L. neilli, the destruction of these karsts would lead to the disappearance of unique intraspecific strains not found elsewhere. Our results highlight the importance of protecting limestone habitats to preserve not only their interspecific but also intraspecific rodent diversity that is highly threatened as more than 20% of limestone karsts in Thailand have already been quarried. Management plans of limestone, a non-renewable resource, should urgently take into account this high biological importance of karsts.
The 1st EnvironmentAsia International Conference on "Environmental Supporting in Food and Energy Security: Crisis and Opportunity"
Bangkok, Thailand

ird-00714455
http://hal.ird.fr/ird-00714455
http://hal.ird.fr/ird-00714455/document
IRD : fdi:010056152

Résumé : At the request of local correspondents of the statistical system, an internship about fishing vessels was organised. The goal of this internship was to show the diversity, variability and specificity of "passive" (or sleeping) vessels, depending, on the one hand, on the region or the country, and on the other hand, on the researched species. The report's table of contents: General Points Lines and ropes Selectivity Ship Owners' Report Nets Mesh Nets Cast Nets Lift Nets Traps Lines and Hooks Handlines Trolling Lines Longlines FADs Fitting out the Boats Line Haulers Gillneters Lobster Pot Boats Boulters Vessel/Species Compatibility ETS Le Drezen Visit Classification of fishing vessels List of "fishing technology" videos Documents in French about "fishing technology" Ending
A la demande des correspondants locaux du système statistique, un stage sur les engins de pêche a été organisé. Ce stage avait pour but de montrer les diversités, la variabilité et la spécificité des engins "passifs" (ou arts dormants), selon d'une part les régions, ou le pays, et d'autre part les espèces recherchées. Sommaire du rapport : Generalites Fils et cordages Sélectivité Rapport d'armement Les filets Les filets maillants Les filets lances Les filets soulevés Les pièges Les lignes et hameçons Les lignes a main Les lignes de traîne Les palangres Les D.C.P. Les aménagements des bateaux Les vireurs Les fileyeurs Les caseyeurs Les palangriers La compatibilité engin / espece Visite des ETS Le Drezen Classification des engins de pêche Liste des films vidéo en "technologie pêche" Documents en français sur "technologie pêche" Finalites

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1994/rapport-2194.pdf
http://archimer.ifremer.fr/doc/00000/2194/

Éditeur(s) : EDP Sciences
Résumé : Daily growth increments measured in the otolith of Thunnus atlanticus were used to estimate the age and growth of individuals. which were sampled from an artisanal fishery operating around fish aggregating devices (FADs) moored off Martinique Island. In this study, 76 otoliths were analysed for fish ranging from 20 to 68 cm fork lengths (FL). The fish were caught using trolling lines at depths ranging from 0 to 10 m. Counts were made, under a light microscope, on the external part of the transverse section of the sagittae, from the primordium to the ventral edge. The mean coefficient of variation of the age reading was 2.4%. To validate readings, the number of increments for 11 individuals was counted using both optic and scanning electron microscopes. The calculated relationship between readings of both methods was found to be linear, with a slope of 1.03 and R-2 = 0.99. Frequency of growth increment formation could not be validated. Growth rates derived from otolith readings were, however, compared to those obtained using a modal progression analysis, which was performed on the length-frequency distributions of the landings over a period of two months. The corroboration between the growth rates was good. One increment was assumed to represent one day. The parameters of the von Bertalanffy growth curve for both sexes were L-infinity = 71.4 cm FL, k = 0.002 day(-1) and tau(0) = -80 days. According to our results, there is no evidence that Martinican moored FADs act as ecological traps for blackfin tuna. Instead, young blackfin tuna probably leave the vicinity of Martinican moored FADs to undergo a trophic migration at 7 to 8 month-old, and then come back about 8 months later to breed in the Lesser Antilles area.
Les microstructures présentes dans les otolithes de Thunnus atlanticus ont été utilisées pour estimer l'âge et la croissance des thons capturés par la pêcherie artisanale exploitant les dispositifs de concentrations de poissons (DCP) mouillés autour de la Martinique. Des thons de 20 à 68 cm de longueur à la fourche (LF) ont été capturés à la ligne de traîne de surface entre 0 et 10 m de profondeur. Les stries d'accroissement ont été comptées sur 76 otolithes en microscopie optique sur la partie externe des coupes transversales de la sagitta, du nucléus jusqu'à l'extrémité verticale de la coupe (coefficient de variations 2,4 %). Afin de vérifier qu'il n'y avait pas de sous-estimation du nombre de stries, nous avons effectué un comptage, en microscopie électronique à balayage, pour 11 individus. La relation établie entre ces deux méthodes de comptage est linéaire avec un pente égale à 1,03 et R2 = 0,99. La vitesse de croissance issue de l'analyse des otolithes a été comparée à celle estimée à partir de l'analyse en progression modale des distributions en fréquence de taille des débarquements sur une période de 2 mois. La corroboration entre les deux méthodes était bonne. Nous avons supposé que la formation des stries de croissance suivait un rythme journalier. Les paramètres de l'équation de croissance de von Bertalanffy pour les 2 sexes confondus sont: L-infinity = 71.4 cm FL, k = 0.002 day(-1) and tau(0) = -80 days. Les résultats de cette étude n'indiquent pas que les DCP ancrés martiniquais puissent agir comme des pièges écologiques pour les thons noirs. Les jeunes thons noirs semblent au contraire quitter la proximité des DCP et entreprendre une migration trophique lorsqu'ils atteignent 7 à 8 mois. Ils ne reviendraient ensuite dans la zone des Petites Antilles qu'environ 8 mois plus tard, manifestement pour se reproduire.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2004 , Vol. 17 , N. 1 , P. 13-18

Droits : EDP Sciences, IFREMER, IRD 2004
http://archimer.ifremer.fr/doc/2004/publication-396.pdf
DOI:10.1051/alr:2004009
http://archimer.ifremer.fr/doc/00000/396/

Éditeur(s) : HAL CCSD American Society for Biochemistry and Molecular Biology
Résumé : International audience
2-Amino-9H-pyrido[2,3-b]indole (AαC) is a carcinogenic heterocyclic aromatic amine formed during the combustion of tobacco. AαC undergoes bioactivation to form electrophilic N-oxidized metabolites that react with DNA to form adducts, which can lead to mutations. Many genotoxicants and toxic electrophiles react with human serum albumin (albumin); however, the chemistry of reactivity of AαC with proteins has not been studied. The genotoxic metabolites, 2-hydroxyamino-9H-pyrido[2,3-b]indole (HONH-AαC), 2-nitroso-9H-pyrido[2,3-b]indole (NO-AαC), N-acetyloxy-2-amino-9H-pyrido[2,3-b]indole (N-acetoxy-AαC), and their [(13)C6]AαC-labeled homologues were reacted with albumin. Sites of adduction of AαC to albumin were identified by data-dependent scanning and targeted bottom-up proteomics approaches employing ion trap and Orbitrap MS. AαC-albumin adducts were formed at Cys(34), Tyr(140), and Tyr(150) residues when albumin was reacted with HONH-AαC or NO-AαC. Sulfenamide, sulfinamide, and sulfonamide adduct formation occurred at Cys(34) (AαC-Cys(34)). N-Acetoxy-AαC also formed an adduct at Tyr(332). Albumin-AαC adducts were characterized in human plasma treated with N-oxidized metabolites of AαC and human hepatocytes exposed to AαC. High levels of N-(deoxyguanosin-8-yl)-AαC (dG-C8-AαC) DNA adducts were formed in hepatocytes. The Cys(34) was the sole amino acid of albumin to form adducts with AαC. Albumin also served as an antioxidant and scavenged reactive oxygen species generated by metabolites of AαC in hepatocytes; there was a strong decrease in reduced Cys(34), whereas the levels of Cys(34) sulfinic acid (Cys-SO2H), Cys(34)-sulfonic acid (Cys-SO3H), and Met(329) sulfoxide were greatly increased. Cys(34) adduction products and Cys-SO2H, Cys-SO3H, and Met(329) sulfoxide may be potential biomarkers to assess exposure and oxidative stress associated with AαC and other arylamine toxicants present in tobacco smoke
ISSN: 0021-9258

hal-01169796
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169796
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169796/file/Manuscript_KP_JBC_REV_050515_final_TC.pdf
DOI : 10.1074/jbc.M115.646539
PUBMED : 25953894

Résumé : A partir de 1996 pour combattre une inflation galopante, Haïti a mis en place une politique de ciblage de la masse monétaire avec un objectif d’inflation. La forte inflation a pris naissance dans l’accumulation du déficit budgétaire et le financement monétaire de celui-ci par le seigneuriage. Cette pratique du financement par l’impôt inflationniste engendre donc un problème de crédibilité, en dépit de la double circulation monétaire caractérisée par un niveau élevé de dollarisation de l’économie qui a atteint 50% dès 2004. La politique monétaire mise en œuvre vise à éviter le biais inflationniste et différentes approches pour améliorer la crédibilité ont été considérées. La crise économique commencée en 2007 dans les pays développés, est née de l’instabilité des marchés financiers et a obligé la mise en place de politique monétaire non conventionnelle afin d’éviter la trappe de liquidité. Cette crise a donné lieu à une accumulation de réserves internationales et un faible taux d’intérêt dans les économies des pays émergents et les économies des pays sous-développés. Il devenait évident que le fondement théorique de la stratégie de politique monétaire demeure la recherche à la fois de la stabilité monétaire et la stabilité des marchés financiers afin de conserver la crédibilité et l’efficacité de la politique monétaire des banques centrales. L’utilisation abusive faite par la FED aux USA de l’assouplissement quantitatif, fait craindre une crise de la dette souveraine des Etats, la création de bulle spéculative, et un retour à la récession. Avec le cas d’Haïti, les anticipations ne sont pas rationnelles à cause des erreurs de prévisions. Une analyse jointe des taux des banques, en utilisant un modèle VECM, ne nous a pas permis de trouver un taux d’équilibre de long terme entre eux. Le test de Seo conclu que les chocs ont affecté la dynamique de ces taux. Les accords avec le FMI ont permis une très faible amélioration de l’efficacité de la politique monétaire avec l’accumulation de réserves dans la foulée de la crise qui a démarré en 2007.
Since 1996 in order to fight inflation, Haiti put in place a monetary policy targeting money supply with inflation target. Inflation high gets started from budget deficit accumulation and monetary financing by seigniorage. This practice of financing by inflationary taxes implies a problem of credibility of monetary policy even with a double monetary circulation and a dollarization of the economy reaching 50% since 2004. The monetary policy implementation aims to avoid inflation bias and different approaches for improving credibility has been considered. The economic crisis started in 2007 created by the instability of the financial markets, forced the establishment of non-conventional monetary policy to avoid the liquidity trap. This crisis has resulted in an accumulation of international reserves and low interest rate in emerging economies and the economies of underdeveloped countries. It became more and more evident that the theoretical basis of the monetary policy strategy remains looking for both, monetary stability and the stability of the financial markets, in order to maintain the credibility and efficiency of the monetary policy of central banks. The misuse made by the FED in the USA of quantitative easing, rise concerns about a crisis of sovereign debt of the Sates, the creation of speculative bubble, and a possible return to the recession. With the case of Haiti, the expectations are not rationales because of forecast errors. A joint analysis of banks interests’ rates using a VECM model has not enabled us to find a long run equilibrium rate between them. The Seo test concluded that chocks affect the dynamic of both rates. The agreements with the IMF allowed improving weakly the monetary policy efficiency with the accumulation of international reserves in the wake of the crisis which started in 2007.

http://www.theses.fr/2013AGUY0701/document

Éditeur(s) : HAL CCSD
Résumé : Sand intrusions (or injectites) are most often the product of post-depositional remobilization of sand leading to its injection into the surrounding rocks. While injectites were recognized for the first time nearly 200 years ago, their emplacement process has been studied for a couple of decades only, since the concepts of deep sea depositional environments have allowed us to better understand their emplacement processes. However, these processes are still relatively poorly understood. Our approach is based on the study of injectites in the Lower Congo Basin from seismic and well data, which we compare to a fossil system in the SE France basin. We have shown that: (1) In buried turbidite channel systems draping deposits on the channel flanks and terraces of channels have the same geophysical signature as 'wing-like' injectites. Finally, the only criterion for identifying seismic injectites is the presence of bedding-discordant seismic reflections, and in the best case the associated uplift of the overlying seismic reflectors. (2) Seismic-scale conical and saucer-shaped sand injectites have been identified in the Lower Congo Basin. The remobilization is likely due to overpressuring induced by the buoyancy effect of hydrocarbons trapped in the margins of a lobe buried underneath 160 m of sediment, followed by the sudden injection of fluidized sand associated with fault reactivation of faults (with a possible role of nearby salt diapirs). (3) A network of injectites (dykes, sills/wings and laccoliths) was formed in the Vocontian basin during the late Albian and/or early Cenomanian, from a lower-middle Albian turbidite channel. The emplacement is probably due to the early compartmentalization of the channel during its burial and the increase of the sedimentation rate generating overpressure; and the subsequent large influx of deep fluids triggering injection. The injection of sand was polyphased: a first episode formed the sills and another emplaced the dykes. Sills/wings and dykes propagated about 2 km laterally away from the parent sand body and about 200 m up to the surface, revealing a much more extended lateral than vertical reach, contrary to the classically accepted idea from the interpretation of seismic data. (4) The emplacement of this large network of injectites was governed by hydrofracturing. Therefore, its morphology is dependent on the host rock heterogeneity (isotropy, fractures), the paleo-stress orientation (ó3 = NW-SE) and the burial depth of the source (300-600 m) at the time of injection. The study of this fossil network allows us to define the relationship between morphology of the injected network and stress state at the time of injection. This relationship can be extrapolated to constrain the morphology of subsurface networks beyond seismicvisibility. (5) Sands injected into low permeability lithologies bear evidence to a major event of fluid escape in the studied basin, but also channeled fluids long after their formation. In this way, injectites both attest to specific episodes of fluid migration in sedimentary basins and contribute to long-lived re-routing of migrating fluids once emplaced. The injection of sand is associated with the sudden escape of fluids, probably resulting from a significant tectonic and/or sedimentary event; in addition, the architecture of injectite networks is governed by the local paleo-stress and heterogeneity in the host rock. Consequently, characterizing injectite networks is an important step in understanding the plumbing systems of continental margins, i.e. the post-depositional evolution of sedimentary basins.
Les intrusions sableuses (ou injectites) sont le plus souvent le produit de la remobilisation post-dépositionnelle des sédiments et de l'injection du sable dans les roches environnantes. Bien que reconnues pour la première fois il y a près de 200 ans, elles ne sont réellement étudiées que depuis quelques dizaines d'années, depuis que les concepts sur les environnements de dépôt dans les domaines marins profonds nous permettent de mieux comprendre les processus de mise en place. Cependant, ces processus restent encore aujourd'hui relativement mal compris. Notre approche repose sur l'étude d'injectites dans le bassin du Bas-Congo a partir de données de sismique et de puits que nous comparerons a un système fossile dans le bassin du SE de la France. Nous avons montre que : (1) Dans des systèmes de chenaux turbiditiques enfouis, les dépôts de drapage sur les marges et terrasses de chenaux présentent la même signature géophysique que les injectites de type "wing". Finalement, le seul critère sismique d'identification des injectites est la présence de réflexions sismiques sécantes vis-a-vis de la stratigraphie associée dans le meilleur des cas au soulèvement des réflecteurs sismiques sus-jacents. (2) Des injectites d'échelle sismique en forme de cône et d'assiette ont été identifiées dans le bassin du Bas-Congo. La remobilisation résulte probablement des pressions anormales induites par l'effet de flottabilité des hydrocarbures piégés dans les marges d'un lobe enfoui sous 160 m de sédiment, puis de l'injection soudaine du sable fluidise associée a la réactivation de failles (possible rôle des diapirs de sel a proximité). (3) Un réseau d'injectites (dykes, sills/wings et laccolites) s'est formé dans le bassin Vocontien entre la fin de l'Albien supérieur et/ou le début du Cénomanien, depuis un chenal turbiditique de l'Albien inférieur-moyen. La mise en place résulte probablement de la compartimentalisation précoce du chenal au cours de son enfouissement et de l'augmentation du taux de sédimentation générant la surpression et de l'apport ulterieur d'importante quantité de fluides profonds déclenchant l'injection. L'injection du sable a été polyphasée : une première injection a formé des sills et une suivante des dykes. Les sills/wings et les dykes se sont propagés latéralement au chenal source sur environ 2 km et vers la surface sur environ 200 m, mettant en évidence une forte remobilisation latérale plutôt que verticale, contrairement a l'idée classiquement admise a partir de l'interprétation des données sismiques. (4) La formation de ce large réseau d'injectites a été gouvernée par des mécanismes d'hydrofracturation. Par conséquent, sa morphologie a été dépendante des hétérogenéités de la roche hôte (milieu isotrope, fracture), des directions de paléo-contraintes (ƒÐ3 = NWSE) et de la profondeur d'enfouissement de la source (300-600 m) au moment de l'injection. L'étude de ce réseau fossile permet de définir les relations entre morphologie du réseau injecté et état de contraintes au moment de l'injection. Cette relation peut être extrapolée de façon à contraindre la morphologie des réseaux de subsurface au-delà de la visibilité sismique. (5) Les sables injectés dans des lithologies de faible perméabilité témoignent d'un épisode d'échappement de fluide important dans les bassins étudiés mais ont aussi guide les fluides longtemps après leur formation. Les injectites contribuent ainsi a l'initiation épisodique et la pérennisation de migrations de fluides dans les bassins sedimentaires. Le processus d'injection est associé a l'échappement brutal de fluides, résultant vraisemblablement d'un évènement tectonique et/ou sédimentaire important, et l'architecture des réseaux d'injectites est gouverné par les paléo-contraintes locales et les hétérogénéités de la roche hôte. Par conséquent, la caractérisation des réseaux d'injectites est une étape importante dans la compréhension de la plomberie des marges, c'est-a-dire l'évolution post-dépôt des bassins sédimentaires.
https://tel.archives-ouvertes.fr/tel-01011486

tel-01011486
https://tel.archives-ouvertes.fr/tel-01011486
https://tel.archives-ouvertes.fr/tel-01011486/document
https://tel.archives-ouvertes.fr/tel-01011486/file/These_Monnier_2013_banalisee.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Background: Comparative analysis, which aims at investigating ecological and evolutionary patterns among species, may help at targeting reservoirs of zoonotic diseases particularly in countries presenting high biodiversity. Here, we developed a simple method to target rodent reservoirs using published studies screening microparasite infections. Methods: We compiled surveys of microparasites investigated in rodents trapped in Thailand. The data comprise a total of 17,358 rodents from 18 species that have been investigated for a total of 10 microparasites (viruses, bacteria and protozoans). We used residual variation of microparasite richness controlled for both rodent sample size and pathogens' screening effort to identify major rodent reservoirs and potential risky habitats. Results: Microparasite species richness was positively related to rodent sample size and pathogens' screening effort. The investigation of the residual variations of microparasite species richness showed that several rodent species harboured more pathogens than expected by the regression model. Similarly, higher pathogen richness than expected was observed in rodents living in non-flooded lands, forests and paddy fields. Conclusion: Our results suggest to target some rodent species that are not commonly investigated for pathogen screening or surveillance such as R. andamanensis or B. savilei, and that non-flooded lands and forests should be more taken into caution, whereas much surveys focused on paddy rice fields and households.
Infection Ecology and Epidemiology

ird-00714369
http://hal.ird.fr/ird-00714369
http://hal.ird.fr/ird-00714369v2/document
DOI : 10.3402/iee.v2iO.18637
IRD : fdi:010055557

Éditeur(s) : HAL CCSD Elsevier
Résumé : This manuscript is an extended version, including an updated bibliography, of the article: Hierarchical cooperativity mediated by chromatin remodeling; the model of the MMTV transcription regulation. Michel, D. 2011. J. Theor. Biol. 287, 74-81
International audience
Chromatin remodeling machineries are abundant and diverse in eukaryotic cells. They have been involved in a variety of situations such as histone exchange and DNA repair, but their importance in gene expression remains unclear. Although the influence of nucleosome position on the regulation of gene expression is generally envisioned under the quasi-equilibrium perspective, it is proposed that given the ATP-dependence of chro-matin remodeling enzymes, certain mechanisms necessitate non-equilibrium treatments. Examination of the celebrated chromatin remodeling system of the mouse mammary tumor virus, in which the binding of transcription factors opens the way to other ones, reveals that breaking equilibrium offers a subtle mode of transcription factor cooperativity, avoids molecular trapping phenomena and allows to reconcile previously conflicting experimental data. This mechanism provides a control lever of promoter responsiveness to transcription factor combinations, challenging the classical view of the unilateral influence of pioneer on secondary transcription factors.
ISSN: 0022-5193

hal-01211233
https://hal.archives-ouvertes.fr/hal-01211233
https://hal.archives-ouvertes.fr/hal-01211233/document
https://hal.archives-ouvertes.fr/hal-01211233/file/nucleosome.pdf
ARXIV : 1509.07440

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The 1415 m deep IODP Hole U1309D (Mid-Atlantic Ridge, 30 degrees N) is the second deepest hole drilled into slow spreading oceanic lithosphere. The recovered section comprises essentially gabbroic rocks, with a large range of compositions. The most primitive end-members of the gabbroic sequence, herein referred to as olivine-rich troctolites (ol > similar to 70%), have textures and geochemical compositions intermediate between that of mantle peridotites and primitive cumulates, indicative of melt impregnation processes. We carried out a detailed microstructural study to further characterize the petrogenetic processes leading to their formation, as well as discuss their mode of emplacement and relationship with neighboring mantle lithosphere. In olivine-rich troctolites, olivines range from coarse-grained subhedral crystals, commonly containing well-developed subgrains, to medium-grained rounded crystals with fewer or no substructures. They are embedded in large, undeformed pyroxene and plagioclase poikiloblasts. Olivine substructures reveal dislocation creep that is consistent with activation of the main high-temperature slip systems, dominantly (010)[100]. Olivine crystallographic preferred orientation is very weak but generally shows a relatively stronger, uncommon [001] concentration. These unusual olivine fabrics are interpreted as resulting from melt impregnation of a previously deformed olivine matrix: the solid olivine framework is disrupted by olivine corrosion along grain and subgrain boundaries, and the high-temperature plastic fabric is modified in a liquid-dominated regime. Based on mineral composition and fabrics and in comparison with what is observed in impregnated mantle rocks elsewhere, we posit that olivine represents relicts of mantle peridotites disaggregated by large melt influx, although the mantle origin of olivine is not unequivocally demonstrated yet. Whatever the initial lithology, impregnation by large volumes of melt has strongly modified the original composition and microstructure. If the mantle origin hypothesis is correct, the original olivine fabric could have been efficiently weakened by dunitization prior to disruption of the olivine framework by melt impregnation. Incorporation, at the base of the lithosphere, of small slivers of impregnated dunite into gabbroic sections, trapped between successive igneous units, may be a common mechanism of lower crustal accretion at slow spreading ridges. Extensive melt-rock interaction processes are expected to contribute significantly to the final chemical composition of erupted lavas.
ISSN: 1525-2027

hal-00496391
https://hal.archives-ouvertes.fr/hal-00496391
DOI : 10.1029/2009GC002995

Éditeur(s) : HAL CCSD
Résumé : National audience
Mass balances are often used to calculate sediment fluxes in sedimentary basins and denudationrates in adjacent topographies on intermediate to long timescales (from a few tens ofthousand to a million years). In this study, we focus on simple Quaternary catchment–alluvial fansystems in the northern Tian Shan Range and its foreland basin to discuss some ideas about sedimentproduction, storage, release, and bypass in relatively short (100 km long) sediment routing systems.Based on a geometrical reconstruction of the fans, we estimated the volumes of sediments exportedout of the range and deposited in its alluvial piedmont during the Middle- Late Pleistocene andthe Holocene. This work shows that the two areas clearly present evidence of a temporary butsignificant storage of sediments during the Pleistocene. These sediments were then excavated anddelivered farther into the foreland basin during the Holocene. The difference between the volumesof materials released from the range and piedmont areas and the volume stored in thecontemporaneous fans downstream indicates that the latter did not trap the whole sediment loadtransported by the rivers. The alluvial fans were bypassed by 27 to 78% of this load toward thedownstream alluvial plain. It implies a major volumetric partitioning of the deposits between thefans and the alluvial plain, with a sedimentation rate about twenty times higher in the fans thanin the plain. However, this volumetric partitioning might only occur during periods with a veryspecific hydrological regime such as the Holocene deglaciation. Eventually, the peculiar sedimentstorage and release pattern within the range and piedmont areas during the Pleistocene and Holocenecomplicates the calculation of mean paleodenudation rates using either sediment budgets or in situproduced cosmogenic nuclides.
Association des Sédimentologistes Français. 15ème congrès français de sédimentologie
Chambéry, France

hal-01252100
https://hal.archives-ouvertes.fr/hal-01252100

Éditeur(s) : HAL CCSD
Résumé : International audience
Necroptosis is a regulated form of cell death involved in several disease models including in particular liver diseases. Receptor-interacting protein kinases, RIPK1 and RIPK3, are the main serine/threonine kinases driving this cell death pathway. We screened a noncommercial, kinase-focused chemical library which allowed us to identify Sibiriline as a new inhibitor of necroptosis induced by tumor necrosis factor (TNF) in Fas-associated protein with death domain (FADD)-deficient Jurkat cells. Moreover, Sib inhibits necroptotic cell death induced by various death ligands in human or mouse cells while not protecting from caspase-dependent apoptosis. By using competition binding assay and recombinant kinase assays, we demonstrated that Sib is a rather specific competitive RIPK1 inhibitor. Molecular docking analysis shows that Sib is trapped closed to human RIPK1 adenosine triphosphate-binding site in a relatively hydrophobic pocket locking RIPK1 in an inactive conformation. In agreement with its RIPK1 inhibitory property, Sib inhibits both TNF-induced RIPK1-dependent necroptosis and RIPK1-dependent apoptosis. Finally, Sib protects mice from concanavalin A-induced hepatitis. These results reveal the small-molecule Sib as a new RIPK1 inhibitor potentially of interest for the treatment of immune-dependent hepatitis. © 2017 Federation of European Biochemical Societies
ISSN: 1742464X

hal-01616420
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616420
DOI : 10.1111/febs.14176
PUBMED : 28715128

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Plants often rely on external, mutualistic partners to survive and reproduce in resource-limited environments or for protection from enemies. Such interactions, including mycorrhizal symbioses and ant-plant associations, are widespread and play an important role at the ecosystem and community levels. In ant-plant mutualisms, the plants may benefit from both the protection provided by the presence of ants and from the nutrients absorbed from insect debris. However, the role of third partners in plant nutrition, particularly ant-associated fungi, has never before been demonstrated. 2. We investigate this issue in the ant-plant Hirtella physophora. In this model system, Allomerus decemarticulatus ants are involved in two, highly specific interactions: first, with their host plant, and, secondly, with a fungus that they actively manipulate. Moreover, the ants combine both plant trichomes and fungal hyphae to make a trap to capture prey. 3. We empirically demonstrate the existence of a third type of interaction between the fungus and the plant through the use of both experimental enrichments with stable isotopes (15N) and histological approaches. The fungus growing in the galleries plays a role in providing nutrients to the host plant, in addition to the structural role it plays for the ants. Fungus-facilitated nitrogen uptake occurs mainly in old domatia, where abundant hyphae are in close contact with the plant cells. Whether the fungi inside the domatia and those in the galleries are the same is still uncertain. 4. Synthesis. Together, our results show that a fungal partner in an ant-plant mutualism can benefit the plant by improving its nutrient uptake, and they demonstrate the existence of a true tripartite mutualismin this system. Our results add further evidence to the notion that interpretations of some ant-plant symbioses as purely protective mutualisms have overlooked these nutritional aspects.
ISSN: 0022-0477

hal-00818792
https://hal.archives-ouvertes.fr/hal-00818792

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Purpose: Marine mangrove sediments in the Manche-à-Eau lagoon (Guadeloupe, Caribbean Sea) harbor locally extensive, white microbial mats. These mats cover the surface of reduced sediments near the roots of red mangrove trees, Rhizophora mangle, and are mainly composed of sulfur-oxidizing bacteria belonging to the Beggiatoaceae family, with some filamentous cyanobacteria. The goal of this study was to investigatethe possible influence of sediment characteristics on the presence of these microbial mats. Materials and methods: Four push cores were collected in April 2013, two from zones with microbial mats and two from zones without mats. Sediment characteristics (grain-size distribution, mineralogy, total organic carbon (TOC) and total nitrogen (TN) contents, atomic TOC/TN ratios, and organic matter (OM) δ13C values) were compared for all four cores.Results and discussion: Significant differences were observed between sediments below microbial mats and those without mats. Sediments with microbial mats contained greater amounts of clay, and higher TOC, TN, and TOC/TN ratios, with lower total carbonate content andδ13C values. The higher clay content most likely results from lower fluid flow velocity near to mangrove roots, while higher TOC/TN ratiosand lower δ13C values indicate higher inputs of OM from mangrove trees. These results are consistent with the fact that microbial mats were observed near the roots of mangrove trees, which trap OM from terrestrial vegetation and fine sediments.Conclusions: The grain-size distribution of sediment particles, the total carbonate content, and the δ13C values are the main parameters discriminating between zones with microbial mats and those without mats. Variations in total carbonate content, which is mainly of biogenic origin, result from conditions that are more favorable for benthic organisms in zones without microbial mats. Variations of the TOC/TN ratios are controlled by the presence of a non-negligible amount of inorganic nitrogen bound to surface clay mineral particles and/or by microbial processes.
ISSN: 1439-0108

hal-01682110
https://hal.univ-antilles.fr/hal-01682110
DOI : 10.1007/s11368-016-1555-6

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Mutualisms, or interactions between species that lead to net fitness benefits for each species involved, are stable and ubiquitous in nature mostly due to "byproduct benefits" stemming from the intrinsic traits of one partner that generate an indirect and positive outcome for the other. Here we verify if myrmecotrophy (where plants obtain nutrients from the refuse of their associated ants) can explain the stability of the tripartite association between the myrmecophyte Hirtella physophora, the ant Allomerus decemarticulatus and an Ascomycota fungus. The plant shelters and provides the ants with extrafloral nectar. The ants protect the plant from herbivores and integrate the fungus into the construction of a trap that they use to capture prey; they also provide the fungus and their host plant with nutrients. During a 9-month field study, we over-provisioned experimental ant colonies with insects, enhancing colony fitness (i.e., more winged females were produced). The rate of partial castration of the host plant, previously demonstrated, was not influenced by the experiment. Experimental plants showed higher δ¹⁵N values (confirming myrmecotrophy), plus enhanced vegetative growth (e.g., more leaves produced increased the possibility of lodging ants in leaf pouches) and fitness (i.e., more fruits produced and more flowers that matured into fruit). This study highlights the importance of myrmecotrophy on host plant fitness and the stability of ant-myrmecophyte mutualisms.
PLoS ONE

hal-00913754
https://hal.archives-ouvertes.fr/hal-00913754
https://hal.archives-ouvertes.fr/hal-00913754/document
DOI : 10.1371/journal.pone.0059405
OATAO : 10202