Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date.
ISSN: 1462-2912

hal-01191731
http://hal.upmc.fr/hal-01191731
http://hal.upmc.fr/hal-01191731/document
http://hal.upmc.fr/hal-01191731/file/Massana_2015_Marine_protist.pdf
DOI : 10.1111/1462-2920.12955

Éditeur(s) : HAL CCSD
Résumé : International audience
Treatment failure and symptomatic relapse are major concerns in American tegumentary leishmaniasis (ATL). Such complications are seen frequently in L.guyanensis infections where patients respond variously to first-line anti-leishmanials and are more prone to develop chronic cutaneous leishmaniasis. The factors underlying this pathology, however, are unknown. Recently ,: we reported that a dsRNA virus (LRV1) nested within L.guyanensis parasites is able to exacerbate experimental murine leishmaniasis by inducing a hyper-inflammatory response. This report investigates the prevalence of LRV1 in human L.guyanensis infection and its effect on treatment efficacy as well as its correlation to symptomatic relapses after the first-line treatment. In our cohort of 75 patients diagnosed with primary-localised ATL, the prevalence of LRV1+ infection was elevated to 58%. All patients infected with LRV1-negative L.guyanensis were cured after one (22/31 i.e.71%) or two (31/31 i.e.100%) doses of pentamidine. Oppositely, 12 out of the 44 LRV1-positive patients presented with persistent infection and symptomatic relapse required extended therapy and the use of second-line drugs. Finally, LRV1 presence was associated with a significant increase in intra-lesional inflammatory markers. In conclusion, LRV1 status in L.guyanensis infection is significantly predictive (p=0.0009) of first-line treatment failure and symptomatic relapse, and could stand to guide therapeutic choices in ATL
Journal of Infectious Diseases

hal-01175528
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01175528
DOI : 10.1093/infdis/jiv355
PUBMED : 26123564

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
ObjectivesTo compare the efficacy, in current clinical practice, of ă first regimens containing abacavir with lamivudine (ABC/3TC) or ă tenofovir with emtricitabine (TDF/FTC) in patients with baseline viral ă load 100000 HIV-1 RNA copies/mL. ă MethodsUsing a prospective cohort, we selected all patients starting a ă first HIV regimen based either on ABC/3TC or on TDF/FTC. The propensity ă score (PS) method was used to limit the indication bias due to the ă observational nature of the data. Adjusting and weighting methods via PS ă were used to compare the effectiveness of a first regimen containing ă ABC/3TC or TDF/FTC. The primary outcome was treatment failure by month ă 12 (M12). ă ResultsOverall, 2781 patients started an antiretroviral (ARV) regimen ă with ABC/3TC or TDF/FTC each in combination with efavirenz, boosted ă atazanavir or boosted darunavir. Among the 2472 uncensored patients ă before M12, 962 (39%) had a baseline viral load 100000 copies/mL of ă whom 294 were in treatment failure at or before M12. Our analyses showed ă no difference between ABC/3TC and TDF/FTC in the risk of treatment ă failure at M12 in patients starting an ARV regimen with a high viral ă load (100000 copies/mL). ă ConclusionsUsing a large prospectively collected cohort of patients ă seeking care in France, we found no evidence that ABC/3TC based regimens ă led to more failures than TDF/FTC based ones in patients with high ă baseline viral loads.
ISSN: 1464-2662

hal-01482656
https://hal.archives-ouvertes.fr/hal-01482656
DOI : 10.1111/hiv.12306

Droits : 2001 Ifremer, Ministère de l'Aménagement du Territoire et de l'Environnement
http://archimer.ifremer.fr/doc/00314/42566/41936.pdf
http://archimer.ifremer.fr/doc/00314/42566/

Résumé : Le présent ouvrage -en quatre volumes- constitue le Document Technique de bilan réalisé à l'issue de dix années de fonctionnement du Réseau National d'Observation de la Qualité du Milieu Marin (RNO). Il marque une étape importante dans l'évolution des programmes de surveillance du littoral français, la troisième de ce type depuis sa mise en place en juin 1974.

Droits : Ifremer, Secrétariat d'Etat auprès du Premier Ministre chargé de l'Environnement
http://archimer.ifremer.fr/doc/00082/19304/16898.pdf
http://archimer.ifremer.fr/doc/00082/19304/

Éditeur(s) : Londres : G. Schulze
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Ville de Pointe-à-Pitre. Réseau des bibliothèques
Permalien : http://www.manioc.org/patrimon/PAP11105
PAP11105

Éditeur(s) : HAL CCSD WB Saunders
Résumé : International audience
OBJECTIVE: We hypothesized that, in Human Immunodeficiency Virus and Hepatitis C Virus (HIV/HCV) co-infected patients who did not respond to peg-interferon and ribavirin, a maintenance therapy with peg-interferon could induce fibrosis regression. METHODS: This was a randomized study with two parallel groups. HIV/HCV co-infected patients received peg-interferon α-2a at 180 μg/week or remained on observation for 96 weeks. The primary endpoint was the percentage of patients who experienced a decrease of at least one point in their Metavir fibrosis score between initial and final liver biopsies. Secondary endpoints included plasma fibrosis markers at week 96, occurrence of HCV-related complications, and survival. RESULTS: A total of 52 patients were randomized (peg-interferon: 25; control: 27) including 18 with cirrhosis. The median (interquartile range) age was 44 (40-46) years, and 69% were male. A total of 64% had ALT levels >1.5 normal values, and the CD4 cell count was 391 (296-537) cells/mm(3); 67% of patients had HIV RNA <200 copies/mL at entry. The main endpoint was assessed in 41 patients. Response rates were 3/20 (15%) and 4/21 (19%) in the peg-interferon and control groups, respectively (p = 0.99). There was no significant difference between peg-interferon and control groups on plasma fibrosis markers at the final visit. Severe liver-related complications were observed in 2 and 5 patients in peg-interferon and control groups, respectively. Three deaths were observed, all in the control group. CONCLUSIONS: A maintenance therapy with peg-interferon α-2a over 96 weeks in HIV/HCV co-infected patients, who were non-responders to HCV treatment, did not change liver fibrosis. ClinicalTrials.gov Identifier: NCT00122616.
ISSN: 0163-4453

hal-00875067
https://hal.archives-ouvertes.fr/hal-00875067
DOI : 10.1016/j.jinf.2013.05.007
PUBMED : 23800784

Éditeur(s) : Paris : Arthus Bertrand
Résumé : portrait du général Ferrand, planche et plan
Siècle(s) traité(s) : 19
Droits : Domaine public
Provenance : Communauté d'agglomération de La Rochelle. Médiathèque Michel-Crépeau
Permalien : http://www.manioc.org/patrimon/MMC16053
MMC16053

Droits : 2003 Ifremer, Ministère de l'Ecologie et du Développement Durable
http://archimer.ifremer.fr/doc/00314/42568/41938.pdf
http://archimer.ifremer.fr/doc/00314/42568/

Éditeur(s) : HAL CCSD American Society of Nephrology
Résumé : International audience
Since the recent publication of data showing favorable outcomes for patients with HIV-1 and ESRD, kidney transplantation has become a therapeutic option in this population. However, reports have documented unexplained reduced allograft survival in these patients. We hypothesized that the unrecognized infection of the transplanted kidney by HIV-1 can compromise long-term allograft function. Using electron microscopy and molecular biology, we examined protocol renal transplant biopsies from 19 recipients with HIV-1 who did not have detectable levels of plasma HIV-1 RNA at transplantation. We found that HIV-1 infected the kidney allograft in 68% of these patients. Notably, HIV-1 infection was detected in either podocytes predominately (38% of recipients) or tubular cells only (62% of recipients). Podocyte infection associated with podocyte apoptosis and loss of differentiation markers as well as a faster decline in allograft function compared with tubular cell infection. In allografts with tubular cell infection, epithelial cells of the proximal convoluted tubules frequently contained abnormal mitochondria, and both patients who developed features of subclinical acute cellular rejection had allografts with tubular cell infection. Finally, we provide a novel noninvasive test for determining HIV-1 infection of the kidney allograft by measuring HIV-1 DNA and RNA levels in patients' urine. In conclusion, HIV-1 can infect kidney allografts after transplantation despite undetectable viremia, and this infection might influence graft outcome.
ISSN: 1046-6673

hal-01121764
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01121764
DOI : 10.1681/ASN.2013050564
PUBMED : 24309185
PUBMEDCENTRAL : PMC3904571

Éditeur(s) : Rome : Vitale Mascardi
Résumé : "Les 5 premières parties (vol. 1 et vol. 2) ont une pagination continue. Le traité de Hernandez, à la fin du volume 2, a seul une pagination spéciale. Titre en rouge et noir, avec vignette gravée sur cuivre. Nombreuses figures sur bois dans le texte de plantes, animaux et minéraux. - Reliure veau brun, dos à 6 nerfs, 17e siècle. - Cachet de la bibliothèque de la Ville de Bordeaux. Leclerc, 1154. - Palaü y Dulcet, 113 538. - Pritzel, 4000. - Sabin, 31516"
Siècle(s) traité(s) : 17
Droits : Domaine public
Provenance : Ville de Bordeaux. Bibliothèque municipale
Permalien : http://www.manioc.org/patrimon/BBX17012
BBX17012

Éditeur(s) : Paris : Bleuet, libraire
Résumé : Dédicace en latin et un tampon en cire de 1805

Droits : Domaine public
Provenance : Fondation Clément
Permalien : http://www.manioc.org/patrimon/FCL18018
FCL18018

Résumé : Cet essai interlaboratoire (EIL) pour l’analyse des sels nutritifs en milieu marin a été organisé par le laboratoire DYNECO/PELAGOS de l’IFREMER le 14 février 2006. Il a été proposé en septembre 2005 aux Laboratoires Environnement Ressources (LER) de l’IFREMER, aux sous-traitants ou collaborateurs des LER, aux laboratoires effectuant des analyses dans le cadre du RNO-hydrologie, aux laboratoires du CNRS participant à SOMLIT (Service d’Observation du Milieu LITtoral) et aux laboratoires de l’IRD. Les 26 laboratoires qui ont participé à cet essai sont listés en Annexe 1. Aucune consigne n’a été donnée sur le choix de la technique analytique : chaque laboratoire a utilisé sa méthode de routine.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00020/13144/10186.pdf
http://archimer.ifremer.fr/doc/00020/13144/

Éditeur(s) : Inter-Research
Résumé : Experimental infections of Penaeus (Litopenaeus) stylirostris were performed with a Vibrio penaeicida strain (AM101) isolated in New Caledonia from Syndrome 93 diseased shrimp. Cumulative mortalities resulting from intramuscular injection or immersion of shrimp in bacterial suspensions demonstrated high virulence for this bacterial strain and suggested that V. penaeicida could be the etiological agent of Syndrome 93. The median lethal dose (LD50) for AM101 was 1.3 x 104 CFU (colony forming units) ml-1 by immersion and less than 5 CFU shrimp-1 by intramuscular challenge, with mortality outbreaks at 48 and 22 h after challenge, respectively. A polymerase chain reaction (PCR) detection assay using a primer set designed from the 16S ribosomal RNA gene of V. penaeicida was developed. It gave an expected amplicon of approximately 310 bp in ethidium bromide-stained agarose gels. The specificity of these primers was assessed with different Vibrio species. Furthermore, DNA extracted by the ChelexTM method could be used to detect fewer than 20 cultured Vibrio cells in seawater or shrimp hemolymph by this assay. It appears to be a reliable screening method for detecting V. penaeicida in shrimp and from the aquatic environment.
Diseases of aquatic organisms (0177-5103) (Inter-Research), 2000-03 , Vol. 49 , N. 2 , P. 109-115

Droits : Inter-Research 2000
http://archimer.ifremer.fr/doc/2000/publication-4436.pdf
DOI:10.3354/dao040109
http://archimer.ifremer.fr/doc/00000/4436/

Résumé : La mesure directe des contaminants dans l'eau fait appel à des techniques analytiques sophistiquées et coûteuses, difficilement applicables à de nombreux échantillons prélevés le long d'un important linéaire côtier. Par ailleurs, la variabilité du milieu littoral confère une représentativité limitée à une mesure ponctuelle effectuée dans la colonne d’eau. Le biomonitoring utilisant la moule repose sur l’hypothèse que le contenu en contaminant dans la chair de cet animal reflète la concentration en contaminants biodisponibles dans l’eau sous forme particulaire et/ou dissoute, selon un processus de bioaccumulation. Cette hypothèse a été validée pour les substances chimiques de type hydrophobe ou intermédiaire, susceptibles de se bioaccumuler et caractérisées par un coefficient de partage n-octanol – eau supérieur à 3. Les techniques dites des bioindicateurs - quantitatifs utilisent la bioaccumulation pour mesurer les niveaux de contamination chimique du milieu, tout en atténuant les fluctuations à court terme du milieu. Les stratégies développées sont de deux types. Celles qui utilisent les populations indigènes de moules sauvages ou cultivées (biomonitoring passif, cas du RNO) et celles qui ont recours aux transplants d’individus provenant d’un site de référence (biomonitoring actif, cas du Rinbio en Méditerranée). À La Réunion, une étude de pré-faisabilté pour l’utilisation d’une espèce de moule tropicale, Modiolus auriculatus, pour l’évaluation de la qualité du milieu marin insulaire tropical a été réalisée en 2000. Les premières conclusions montraient qu’il existait un réel potentiel pour la mise en oeuvre d’un réseau de type actif. La mise en oeuvre de la Directive Cadre sur l’Eau (DCE) du 21 Octobre 2000, notamment son volet chimique nécessite désormais de disposer d’un outil de surveillance pérenne de la qualité chimique des eaux littorales. Pour réaliser ce projet, l’ARVAM a proposé à la DIREN Réunion d’adapter à une espèce de moule tropicale, le concept du biomonitoring déjà développé en France métropolitaine par l’Ifremer. Aussi, en contribution au plan d’action de l’IFRECOR inscrit dans le DOCUP (mesure C2- 08), l’ARVAM a réalisé en partenariat avec l’Ifremer une étude de faisabilité sur 4 ans (2004 - 2008) : le programme MODIOLE. La présente étude aborde quatre thèmes : • Thème 1 : Etude des foyers naturels de modioles et écophysiologie ; • Thème 2 : Capacités bioaccumulatrices de la modiole ; • Thème 3 : Compléments d’informations sur d’autres matrices naturelles ; • Thème 4 : Faisabilité d’un biomonitoring actif des contaminants chimiques à la Réunion au sein du réseau DCE.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00125/23623/21462.pdf
http://archimer.ifremer.fr/doc/00125/23623/

Éditeur(s) : HAL CCSD
Résumé : International audience
We deal with a perturbed version of a Hummel-Seebeck type method to approximate a solution of variational inclusions of the form : 0 ∈ Φ(z) + F(z) where Φ is a single-valued function twice continuously Fréchet differentiable and F is a set-valued map from Rn to the closed subsets of Rn. This framework is convenient to treat in a unified way standard sequential quadratic programming, its stabilized version, sequential quadratically constrained quadratic programming, and linearly constrained Lagrangian methods (see [1]). We obtain, thanks to some semistability and another property (which is close to the hemistability) of the solution z ̄ of the previous inclusion, the local existence of a sequence that is superquadratically or cubically convergent.
ISSN: 2518-3680

hal-01630560
https://hal.archives-ouvertes.fr/hal-01630560
DOI : 10.22606

Éditeur(s) : Paris : Grangé
Siècle(s) traité(s) : 18
Droits : Domaine public
Provenance : Collectivité territoriale de Martinique. Bibliothèque Schoelcher
Permalien : http://www.manioc.org/patrimon/SCH13057
SCH13057

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
BACKGROUND: Cancer/Testis (CT) genes are expressed in male gonads, repressed in most healthy somatic tissues and de-repressed in various somatic malignancies including prostate cancers (PCa). Because of their specific expression signature and their associations with tumor aggressiveness and poor outcomes, CT genes are considered to be useful biomarkers and they are also targets for the development of new anti-cancer immunotherapies. The aim of this study was to identify novel CT genes associated with hormone-sensitive prostate cancer (HSPC), and castration-resistant prostate cancer (CRPC). METHODS: To identify novel CT genes we screened genes for which transcripts were detected by RNA profiling specifically in normal testis and in either HSPC or CRPC as compared to normal prostate and 44 other healthy tissues using GeneChips. The expression and clinicopathological significance of a promising candidate-NR6A1-was examined in HSPC, CRPC, and metastatic site samples using tissue microarrays. RESULTS: We report the identification of 98 genes detected in CRPC, HSPC and testicular samples but not in the normal controls. Among them, cellular levels of NR6A1 were found to be higher in HSPC compared to normal prostate and further increased in metastatic lesions and CRPC. Furthermore, increased NR6A1 immunoreactivity was significantly associated with a high Gleason score, advanced pT stage and cancer cell proliferation. CONCLUSIONS: Our results show that cellular levels of NR6A1 are correlated with disease progression in PCa. We suggest that this essential orphan nuclear receptor is a potential therapeutic target as well as a biomarker of PCa aggressiveness. Prostate © 2013 Wiley Periodicals, Inc.
ISSN: 0270-4137

inserm-00821963
http://www.hal.inserm.fr/inserm-00821963
DOI : 10.1002/pros.22659
PUBMED : 23532770

Éditeur(s) : Paris : Baudinière
Extrait de : Les Maîtres de la plume. Série B
Siècle(s) traité(s) : 20
Droits : Domaine public
Provenance : Collectivité territoriale de Guyane. Bibliothèque Alexandre-Franconie
Permalien : http://www.manioc.org/patrimon/FRA12064
FRA12064

Éditeur(s) : Springer
Résumé : Batch culture experiments using viral enrichment were conducted to test the response of a coastal bacterial community to autochthonous (i.e., co-existing) or allochthonous riverine viruses. The effects of viral infections on bacterial dynamics and activity were assessed by epifluorescence microscopy and thymidine incorporation, respectively, whereas the effect of viral infection on bacterial community composition was examined by polymerase chain reaction-single strand conformation polymorphism 16S ribosomal RNA fingerprinting. The percentages of high nucleic acid-containing cells, evaluated by flow cytometry, were significantly correlated (r (2) = 0.91, n = 12, p < 0.0001) to bacterial production, making this value a good predictor of active cell dynamics along the study. While confinement and temperature were the two principal experimental factors affecting bacterial community composition and dynamics, respectively, additions of freshwater viruses had significant effects on coastal bacterial communities. Thus, foreign viruses significantly reduced net bacterial population increase as compared to the enrichment treated with inactivated virus. Moreover, freshwater viruses recurrently and specifically affected bacterial community composition, as compared to addition of autochthonous viruses. In most cases, the combined treatment viruses and freshwater dissolved organic matter helped to maintain or even enhance species richness in coastal bacterial communities in agreement to the 'killing the winner' hypothesis. Thus, riverine virus input could potentially influence bacterial community composition of the coastal bay albeit with modest modification of bulk bacterial growth.
Microbial Ecology (0095-3628) (Springer), 2009-02 , Vol. 57 , N. 2 , P. 295-306

Droits : 2009 Springer
http://archimer.ifremer.fr/doc/2009/publication-6636.pdf
DOI:10.1007/s00248-008-9428-1
http://archimer.ifremer.fr/doc/00000/6636/