Éditeur(s) : Fundacion Global Democracia y Desarrollo (FUNGLODE) Fundacion Global Democracia y Desarrollo (FUNGLODE)
Résumé : (Funding) Support for the development of the technical infrastructure and partner training provided by the United States Department of Education TICFIA program.
South America

Droits : All rights reserved by the source institution.
99934-0-357-1

Éditeur(s) : HAL CCSD American Diabetes Association
Résumé : International audience
OBJECTIVE: To compare incidences and risk factors for diabetes using seven definitions, with combinations of pharmacological treatment, fasting plasma glucose (FPG) ≥7.0 mmol/L, and HbA(1c) ≥6.5%. RESEARCH DESIGN AND METHODS: Participants aged 30-65 years from the Data from an Epidemiological Study on the Insulin Resistance Syndrome (DESIR) cohort were followed for 9 years. RESULTS: More men had incident diabetes as defined by FPG ≥7.0 mmol/L and/or treatment than by HbA(1c) ≥6.5% and/or treatment: 7.5% (140/1,867) and 5.3% (99/1,874), respectively (P < 0.009); for women incidences were similar: 3.2% (63/1,958) and 3.4% (66/1,954). Known risk factors predicted diabetes for almost all definitions. Among those with incident diabetes by FPG alone versus HbA(1c) alone, there were more men (78 vs. 35%), case patients were 8 years younger, and fewer were alcohol abstainers (12 vs. 35%) (all P < 0.005). A diabetes risk score discriminated well between those with and without incident diabetes for all definitions. CONCLUSIONS: In men, FPG definitions yielded more incident cases of diabetes than HbA(1c) definitions, in contrast with women. An FPG-derived risk score remained relevant for HbA(1c)-defined diabetes.
Diabetes Care

inserm-00739799
http://www.hal.inserm.fr/inserm-00739799
http://www.hal.inserm.fr/inserm-00739799/document
DOI : 10.2337/dc10-1581
PUBMED : 21346181

Éditeur(s) : Actes du 6e colloque national BRG, La Rochelle, 2-3-4 octobre 2006
Résumé : Previous studies have shown heritable variation in larval developmental traits in the Pacific oyster Crassostrea gigas. In order to study the genetic consequences of production of oyster larvae in hatcheries, two factors, specific to hatcheries, were examined: the effect of discarding the smallest larvae (i.e. culling) and the effect of temperature (20°C versus 26°C). A mixed-family approach was used in order to infer the genetic composition of larval populations and family assignment, limiting possible environmental bias and allowing the study of a relatively large number of families using a limited number of larval tanks. Our results show that three multiplexed highly polymorphic microsatellite markers are a powerful tool for family assignment and, consequently, for the study of bivalve larvae genetics. Culling, by selective sieving of the smallest larvae is an advantageous practice at a phenotypic scale as it reduced variance in larval size, variance of developmental rate and time to settlement. Culling of 50% of the larval population only led to 15% less spat, showing a positive phenotypic correlation between larval growth and settlement success. However, culling represents a substantial risk for diversity loss, because it increases the variance of reproductive success among parental oysters. The effective population sizes of early settling cohorts of settlement were lower than those of later ones. Our results show that the settlement of slow growing larvae significantly contributes to minimizing the variability of reproductive success and therefore to maximizing genetic diversity. These results corroborate the low estimations of variability of broodstocks sampled in several French commercial hatcheries, relative to natural populations. The genetic composition of the larval population and the resulting spat was significantly different between the two tested temperatures, revealing genotype x environment interaction for survival. Similarly, genotype x environment interaction was also observed for larval growth as a higher temperature exerted a positive influence on the expression of genetic variability for this trait. Consequently, we can conclude that a temperature of 26°C coupled with culling, to common practice in oyster hatcheries, is likely to amplify the selection pressure for fast growing larvae. To test for this hypothesis, we compared larval developmental traits in the progeny of a hatchery broodstock closed for 7 generations, with the progeny of wild oysters and the two possible hybrids. Our results show that selection of fast growing larvae can counteract presumed inbreeding depression, due to higher mean relatedness among hatchery broodstock than in the wild. Genetic effects of intensive rearing conditions at larval stage are significant and should be taken into account in hatchery practices, especially in terms of genetic diversity management.
Afin d'étudier les conséquences génétiques des pratiques de production en écloserie d'huître creuse, deux facteurs ont été examinés : l'élimination des petites larves et la température. Nos résultats montrent que l'assignation de parenté par marqueurs microsatellites est un outil performant pour les études génétiques en phase larvaire de familles élevées en mélange. Bien qu'avantageux d'un point de vue phénotypique, le tamisage sélectif représente un risque de perte de diversité. La fixation des larves à croissance lente permet en effet de minimiser la variabilité du succès reproducteur et de fait, de maximiser la variabilité génétique. Ces résultats corroborent les estimations de variabilité sur les stocks d'écloseries françaises où l'on constate une diversité allélique inférieure à celle de populations issues du milieu naturel. La température exerce également une influence sur la précocité de l'expression de la variabilité génétique pour la croissance larvaire. Ainsi une température élevée associée à une procédure de tamisage peut amplifier l'effet sélectif. Enfin, la sélection de larves à croissance rapide semble démontrée, s'opposant à la dépression de consanguinité présumée. Les conditions d'élevage peuvent donc avoir un effet génétique significatif qui devrait être pris en considération dans les pratiques d'écloserie, notamment dans la gestion de la diversité génétique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/acte-1505.pdf
http://archimer.ifremer.fr/doc/00000/1505/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le patrimoine et le tourisme sont des facteurs avérés de développement. De leur bonne exploitation peut contribuer à l’amélioration des conditions d’existence des populations locales. L’Est-Cameroun est le fief de ressources naturelles et culturelles d’une étonnante diversité pouvant impulser une forte activité touristique. Cependant, même si cette région reçoit chaque année des touristes nationaux et étrangers, elle ne peut pas se targuer de faire profiter sa population des effets directs, indirects et induits qu’engendrerait une activité touristique convenablement menée. Le présent article expose, dans une perspective historique (1980-2010), les raisons pour lesquelles, le tourisme et le développement de l’Est-Cameroun piétinent en dépit de ses nombreuses ressources patrimoniales.La collecte des données (écrites, orales, iconographiques, électroniques) sur le terrain de recherche associée à l’observation permet de constater que le tourisme fut très vite relégué au second plan. L’exploitation minière et forestière intensive, au lieu de faciliter l’émergence de la région, a plutôt hypothéquée son avenir. Le rôle des agences chargées de la gestion du tourisme à l’Est-Cameroun s’est limité à l’inventaire des sites touristiques, l’aménagement sporadique de quelques-uns et la mise en œuvre d’actions promotionnelles approximatives. La négligence du tourisme par les autorités camerounaises n’est pas une nouveauté ; elle a pour corollaire l’apparition de difficultés diverses (braconnage, manque de personnel, insécurité…).
Heritage and tourism are recognized factors of development. Their good exploitation can contribute to the improvement of the conditions of existence of local populations. East-Cameroon is the fief of natural and cultural resources which can stimulate tourism. Although even if this region receives every year domestic and foreign tourists, its population cannot profit from direct, indirect and induced effects which would engender a suitably led tourist activity. The present article exposes, in a historical perspective (1980-2010), reasons why, tourism and development of East-Cameroon tramples in spite of its numerous heritage resources. The data collection (written, oral, iconographic, electronic…) on the research filed and personal observation allow to notice that tourism was very fast relegated in East-Cameroon. The intensive mining and forest exploitation have hypothecated the future of this area instead of developing it. Moreover, the role of tourism agencies in eastern Cameroon is limited itself to inventory of places of interest, sporadic development and approximate promotional actions. The negligence of tourism by the Cameroon authorities is not novelty; it has for corollary appearance of difficulties (as poaching, lack of personal, insecurity).
Cameroun

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.9453
http://journals.openedition.org/etudescaribeennes/9453

Éditeur(s) : HAL CCSD Instituto Oswaldo Cruz, Ministério da Saúde
Résumé : International audience
Leishmania are protozoan parasites that show remarkable diversity, as revealed by the various clinical forms of leishmaniasis, which can range from mild skin lesions to severe metastatic cutaneous/mucosal lesions. The exact nature and extent of Leishmania phenotypic diversity in establishing infection is not fully understood. In order to try to understand some aspects of this diversity, we subcutaneously infected BALB/c mice with first and second generation subclones of a L. amazonensis strain isolated from a patient (BA125) and examined in vivo lesion growth rate and antimony susceptibility. In vivo fast-, medium- and slow-growing subclones were obtained; moreover, fast-growing subclones could generate slow-growing subclones and inversely, revealing the continuous generation of diversity after passage into mice. No antimony-resistant subclone appeared, probably a rare occurrence. By tagging subclone cells with a L. amazonensis genomic cosmid library, we found that only a very small number of founding cells could produce lesions. Leishmania clones transfected with in vivo selected individual cosmids were also diverse in terms of lesion growth rate, revealing the cosmid-independent intrinsic characteristics of each clone. Our results suggest that only a few of the infecting parasites are able to grow and produce lesions; later, within the cell mixture of each lesion, there coexist several parasite populations with different potentialities to grow lesions during the next infection round. This may reflect a sort of programmed heterogeneity of individual parasites, favoring the survival of some individuals in various environmental conditions.
ISSN: 0074-0276

hal-01489008
https://hal-univ-perp.archives-ouvertes.fr/hal-01489008

Éditeur(s) : HAL CCSD Instituto Oswaldo Cruz, Ministério da Saúde
Résumé : International audience
Leishmania are protozoan parasites that show remarkable diversity, as revealed by the various clinical forms of leishmaniasis, which can range from mild skin lesions to severe metastatic cutaneous/mucosal lesions. The exact nature and extent of Leishmania phenotypic diversity in establishing infection is not fully understood. In order to try to understand some aspects of this diversity, we subcutaneously infected BALB/c mice with first and second generation subclones of a L. amazonensis strain isolated from a patient (BA125) and examined in vivo lesion growth rate and antimony susceptibility. In vivo fast-, medium- and slow-growing subclones were obtained; moreover, fast-growing subclones could generate slow-growing subclones and inversely, revealing the continuous generation of diversity after passage into mice. No antimony-resistant subclone appeared, probably a rare occurrence. By tagging subclone cells with a L. amazonensis genomic cosmid library, we found that only a very small number of founding cells could produce lesions. Leishmania clones transfected with in vivo selected individual cosmids were also diverse in terms of lesion growth rate, revealing the cosmid-independent intrinsic characteristics of each clone. Our results suggest that only a few of the infecting parasites are able to grow and produce lesions; later, within the cell mixture of each lesion, there coexist several parasite populations with different potentialities to grow lesions during the next infection round. This may reflect a sort of programmed heterogeneity of individual parasites, favoring the survival of some individuals in various environmental conditions.
ISSN: 0074-0276

hal-01489009
https://hal-univ-perp.archives-ouvertes.fr/hal-01489009

Résumé : Genetic consequences of production of Pacific oyster larval in hatchery: drift and selective pressures related to rearing practices. In order to study the genetic consequences of production of oyster larvae in hatcheries, two factors were examined: the effects of discarding the smallest larvae (i.e. culling) and temperature effects. A mixed-family approach was used in order to infer the genetic composition of the larval population. The results show that high polymorphic microsatellite-based family assignment is a powerful tool for the study of bivalve larvae genetics. Culling by selective sieving is an advantageous practice at a phenotypic scale, but also represents a substantial risk for diversity loss if parentage assignment is not introduced as a breeding practice. Settlement of slow growing larvae contributes to minimizing the variability of reproductive success and therefore to maximizing genetic diversity. These results corroborate the lower estimations of variability made on broodstocks from French commercial hatcheries relative to natural populations. Temperature exerts an influence on the expression of genetic variability for larval growth. A temperature of 26°C, coupled with culling could amplify the selective effect. Furthermore, selection of fast growing larvae has proven to counteract inbreeding depression at this stage. Genetic effects of intensive rearing conditions are significant and should be taken into account in hatchery practices, especially in terms of genetic diversity management.
Afin d'étudier les conséquences génétiques des pratiques de production de larves en écloserie d'huître creuse, deux facteurs ont été examinés : l'effet de l'élimination des plus petites larves et l'effet de la température. Une approche de familles élevées en mélange a été utilisée afin d'avoir accès à l'information génétique au stade larvaire. Les résultats obtenus montrent que l'assignation de parenté basée sur des marqueurs microsatellites hautement discriminants est un outil performant pour les études génétiques en phase larvaire. Bien qu'avantageuse d'un point de vue phénotypique, la pratique de tamisage sélectif représente un risque substantiel de perte de diversité si cette pratique n'est pas associée à une assignation de parentée par empreintes génétiques. La fixation des larves à croissance lente permet de minimiser la variabilité du succès reproducteur et de fait, de maximiser la variabilité génétique. Ces résultats corroborent les estimations de variabilité sur les stocks d'écloseries commerciales françaises où l'on constate une diversité allélique inférieure à celle de populations issues du milieu naturel. La température exerce également une influence sur la précocité de l'expression de la variabilité génétique pour la croissance larvaire. Ainsi une température élevée (26°C) associée à une procédure de tamisage peut amplifier l'effet sélectif. Enfin, la sélection de larves à croissance rapide semble démontrée, s'opposant à la dépression de consanguinité présumée en phase larvaire. Les conditions d'élevage peuvent donc avoir un effet génétique significatif qui devrait être pris en considération dans les pratiques d'écloserie, notamment dans la gestion de la diversité génétique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/rapport-1459.pdf
http://archimer.ifremer.fr/doc/00000/1459/

Éditeur(s) : HAL CCSD
Résumé : International audience
Trees can control their shape and resist gravity thanks to their ability to produce wood under tensile stress. This stress is known to be produced during the maturation of wood fibres but the mechanism of its generation remains unclear. This study focuses on the formation of the secondary wall in tension wood produced in artificially tilted poplar saplings. Thickness of secondary wall layer (SL) and gelatinous layer (GL) were measured from cambium to mature wood in several trees sampled at different times after tilting. Measurements on wood fibres produced before tilting show the progressive increase of secondary wall thickness during the growing season. After the tilting date, SL thickness decreased markedly from normal wood to tension wood while the total thickness increased compared to normal wood, with the development of a thick GL. However, even after GL formation, SL thickness continues to increase during the growing season. GL thickening was observed to be faster than SL thickening. The development of the unlignified GL is proposed to be a low cost, efficient strategy for a fast generation of tensile stress in broadleaved trees.
IAWA journal / International Association of Wood Anatomists.

hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277/document
https://hal.archives-ouvertes.fr/hal-01229277/file/AbediniClair-Iawa-TensionCellWallThickening_preprint_HAL.pdf
DOI : 10.1163/22941932-00000084

Éditeur(s) : HAL CCSD
Résumé : International audience
Symbiosis is a widespread phenomenon in the biosphere. In marine benthic environments breakdown of symbiosis is responsible for coral bleaching and dramatically affects coral reef ecosystems functioning [1]. In the water column, planktonic organisms are key component of pelagic ecosystems and a number of species form mutualistic association with microalgae forming a photosymbiosis [2]. Here we intended to investigate the genetic basis of photosymbiosis, through a transcriptomic approach on marine plankton organisms. We focused more specifically on associations occurring between radiolarian host (protist, zooplankton) and dinoflagellates symbiont (protist, phytoplankton) living inside the host cell. It has recently been highlighted that these holobionts are widespread in oligotrophic open oceans and there are also evidences of their fundamental implication in biogeochemical carbon, silica and strontium cycles [3, 4, 5, 6]. RNA-seq technologies allow obtaining an unprecedented amount of data for unicellular organisms isolated from the environment [7]. The study of such non-model holobionts datasets requires de novo assembly, which implies considerable computational resources and the potential production of chimeric sequences [8, 9].We therefore developed an original strategy aiming at accelerating and improving de novo assembly for holobiont datasets. We chose SIMKA [10] a fast kmer-based method initially developed to estimate the similarity between numerous metagenomic datasets, and which has been recently adapted to extract their common sequences. As our symbionts are identified, we used SIMKA to compare our holobionts transcriptomes to publicly available dinoflagellates transcriptomes [11] generating two datasets, one composed of reads from the symbionts and another with reads from the host (for which no reference data are currently available). Independent assemblies were then performed in parallel, accelerating the study process, and minimizing the proportion of resulting chimeric sequences. Our strategy produced a unique and comprehensive genomic dataset for Radiolaria [12, 13], and offers a pragmatic, large scale, comparison strategy to assemble and study holobionts [9]. Our new sequences obtained from holobionts study will be used for phylogenomics investigation, as reference for environmental metagenomic studies and ultimately to understand and characterize the molecular basis of symbiotic relationships in the plankton.Bibliografic references :[1] Simon K. Davy, Denis Allemand, and Virginia M. Weis. “Cell Biology of Cnidarian-Dinoflagellate Symbiosis”. In: Microbiology and Molecular Biology Reviews 76.2 (June 1, 2012), pp. 229–261. issn: 1092-2172, 1098- 5557. doi: 10.1128/MMBR.05014-11.[2] Janouškovec, J. et al. “Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics”. in: PNAS 201614842 (2016). doi:10.1073/pnas.1614842114[3] Tristan Biard et al. “In situ imaging reveals the biomass of giant protists in the global ocean”. In: Nature advance online publication (Apr. 20, 2016). issn: 0028-0836. doi: 10.1038/nature17652.[4] Lionel Guidi et al. “Plankton networks driving carbon export in the olig- otrophic ocean”. In: Nature 532.7600 (Apr. 28, 2016), pp. 465–470. issn: 0028-0836. doi: 10.1038/nature16942.[5] Diane K. Stoecker et al. “Acquired phototrophy in aquatic protists”. In: Aquatic Microbial Ecology 57.3 (Nov. 24, 2009), pp. 279–310. doi: 10.3354/ame01340.[6] Johan Decelle et al. “An original mode of symbiosis in open ocean plankton”. In: Proceedings of the National Academy of Sciences 109.44 (Oct. 30, 2012), pp. 18000–18005. issn: 0027-8424, 1091-6490. doi: 10. 1073/pnas.1212303109.[7] Sergio Balzano et al. “Transcriptome analyses to investigate symbiotic relationships between marine protists”. In: Frontiers in Microbiology 6 (Mar. 17, 2015). issn: 1664-302X. doi: 10.3389/fmicb.2015.00098.[8] Li, B. et al. “Evaluation of de novo transcriptome assemblies from RNA-Seq data”. In: Genome Biology 15, 553 (2014).[9] Sangwan, N., Xia, F. & Gilbert, J. A. “Recovering complete and draft population genomes from metagenome datasets”. In: Microbiome 4, 8 (2016).[10] Gaëtan Benoit et al. “Multiple comparative metagenomics using mul- tiset k -mer counting”. In: PeerJ Computer Science 2 (Nov. 14, 2016). doi: 10.7717/peerj-cs.94.[11] Patrick J. Keeling et al. “The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing”. In: PLOS Biol 12.6 (June 2014), e1001889. issn: 1545-7885. doi: 10.1371/journal.pbio.1001889.[12] Burki, F. et al. “Evolution of Rhizaria: new insights from phylogenomic analysis of uncultured protists”. In BMC Evolutionary Biology 10, 377 (2010).
International Conference on Holobionts
Paris, France

hal-01575069
https://hal.inria.fr/hal-01575069

Éditeur(s) : Université d'Angers
Résumé : In oyster farming areas, organic matter fluxes toward sediment is increased. Pacific oysters (Crassostrea gigas) reject organic-rich faeces and pseudofaeces as a result of filtration process. Organic matter can be consumed by benthic fauna, but in excess it can entails the reduction of benthic faunal species richness, abundance and biomass. Organic matter degradation also induces hypoxic (or anoxic) conditions in the sediment, and production of ammonia and sulfides in toxic concentrations. The main objective of this study is to assess the effects of oyster farming on benthic intertidal ecosystems in the Pertuis Charentais. Benthic macrofauna, living (stained) foraminifera, and physicochemical characteristics of the water column and sediment were used as indicators to evaluate these effects. A multidisciplinary approach was conducted across the Pertuis Charentais at 3 different spatial scales: an oyster trestle (micro-scale), an oyster culture area (meso-scale) and various sites across the Pertuis Charentais (macro-scale). The study was also realised at 4 different temporal scales: some months for the spatial micro-scale, every two weeks for 2 years at meso-scale and once per season during one year at macro-scale. In this study, I found that oyster farming enriches sediment in fine particles, organic matter (up to 12 %), particulate organic carbon (15-20 µg mg 1) and leads to high microphytobenthic biomass. Moreover, the association of seasonnal warming (during spring and summer), remineralisation of accumulated organic matter and short-term hypoxic conditions leads to sulfides and ammonium production. Consequently, the benthic biodiversity decreases and the population dynamic is disturbed. The population dynamic disturbance is characterised by fast abundance rises followed by high mortality rates. In these conditions, tolerant benthic macrofaunal (Cirratulidae, Spionidae and Capitellidae) and foraminiferal (Ammonia tepida and Cribroelphidium gunteri) species are promoted. AMBI index confirms "medium" ecological quality of oyster farming areas. On the contrary, across the control sites, sensible species are maintained (Amphipods, Rosalina cf. vilardeboana). Comparison of oyster farming techniques shows that on-bottom culture is less disturbing for benthic ecosystem than off-bottom culture. Axial tomodensitometry, an innovative method, was used to describe in 3D the sedimentary column organisation. I show that oyster farming modifies the sedimentary column functioning. Indeed, the macrofaunal diversity decrease leads to the modification of the functional diversity of assemblages. Thus, the vertical distribution of living foraminifera is limited in oyster farming areas, because their distribution is tightly related to macrofaunal bioturbating modes.
Dans les zones ostréicoles, les flux de matière organique sont importants, l'huître Crasssotrea gigas rejetant sous forme de pseudo-fécès et de fécès de grandes quantités de matière organique. De ce fait, bien que cette matière organique puisse être consommée par la faune benthique, sa surabondance peut provoquer une réduction de la richesse spécifique, de l'abondance et de la biomasse et provoquer sur le plan des processus biogéochimiques des déplétions en oxygène et l'apparition de substances comme l'ammonium et les sulfures dont les concentrations peuvent devenir toxiques. L'objectif principal de cette étude était donc de déterminer l'impact de l'ostréiculture, grâce à plusieurs indicateurs, sur le compartiment benthique d'un écosystème littoral comme les pertuis charentais. Pour évaluer ces effets, la macrofaune benthique et les foraminifères vivants benthiques ont été utilisés en association avec des mesures des paramètres physico-chimiques de la colonne d'eau et du sédiment. Une approche pluridisciplinaire a ainsi été menée dans les pertuis charentais à trois échelles spatiales différentes : à l'échelle d'une table ostréicole (micro-échelle), à l'échelle d'un site ostréicole (méso-échelle) et à l'échelle des pertuis charentais (macro-échelle). Dans les trois cas, un suivi dans le temps a été associé à une étude de distribution spatiale, quelques mois à micro-échelle, tous les quinze jours pendant deux années à méso-échelle et une fois par saison pendant une année à macro-échelle. Ces différentes approches ont permis d'avoir une vision pertinente de la dynamique et de la réponse fonctionnelle de la faune benthique aux changements induits par la présence de l'ostréiculture. La présence des cultures ostréicoles dans les pertuis charentais enrichit les sédiments en particules fines, en matière organique (12 %), en carbone organique particulaire (15-20 µg mg-1) et favorise une production microphytobenthique élevée. Pendant la période chaude de l'année printemps-été, la reminéralisation de la matière organique accumulée associée à des hypoxies temporaires a favorisé la production de sulfures et d'ammonium. Dans les stations soumises à l'ostréiculture, la diversité des assemblages diminue. La dynamique des espèces est caractérisée par des augmentations rapides des abondances suivies d'épisodes de mortalité. Les espèces tolérantes de la macrofaune benthique (Cirratulidae, Spionidae et Capitellidae) et des foraminifères vivants benthiques (Ammonia tepida et Cribroelphidium gunteri) sont favorisées. Le calcul de l'indice AMBI confirme la qualité écologique moyenne de ces sites. Au contraire, dans la station témoin, les espèces sensibles sont favorisées (Amphipodes, Rosalina cf. vilardeboana). La comparaison de la technique de culture sur table et de culture à plat a montré que la culture des huîtres à plat est moins perturbante pour le milieu. L'étude de la bioturbation a montré l'influence qui existe entre le mode de bioturbation des différents groupes de la macrofaune et la répartition verticale des foraminifères vivants dans la colonne sédimentaire. La diminution de la diversité des assemblages de la macrofaune dans les zones soumises à l'ostréiculture modifient la diversité fonctionnelle de ces assemblages et affectent le fonctionnement de la colonne sédimentaire, limitant la répartition verticale des foraminifères dans ces zones.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-2582.pdf
http://archimer.ifremer.fr/doc/00000/2582/

Éditeur(s) : HAL CCSD Instituto Oswaldo Cruz, Ministério da Saúde
Résumé : International audience
Leishmania are protozoan parasites that show remarkable diversity, as revealed by the various clinical forms of leishmaniasis, which can range from mild skin lesions to severe metastatic cutaneous/mucosal lesions. The exact nature and extent of Leishmania phenotypic diversity in establishing infection is not fully understood. In order to try to understand some aspects of this diversity, we subcutaneously infected BALB/c mice with first and second generation subclones of a L. amazonensis strain isolated from a patient (BA125) and examined in vivo lesion growth rate and antimony susceptibility. In vivo fast-, medium- and slow-growing subclones were obtained; moreover, fast-growing subclones could generate slow-growing subclones and inversely, revealing the continuous generation of diversity after passage into mice. No antimony-resistant subclone appeared, probably a rare occurrence. By tagging subclone cells with a L. amazonensis genomic cosmid library, we found that only a very small number of founding cells could produce lesions. Leishmania clones transfected with in vivo selected individual cosmids were also diverse in terms of lesion growth rate, revealing the cosmid-independent intrinsic characteristics of each clone. Our results suggest that only a few of the infecting parasites are able to grow and produce lesions; later, within the cell mixture of each lesion, there coexist several parasite populations with different potentialities to grow lesions during the next infection round. This may reflect a sort of programmed heterogeneity of individual parasites, favoring the survival of some individuals in various environmental conditions.
ISSN: 0074-0276

hal-01489007
https://hal-univ-perp.archives-ouvertes.fr/hal-01489007

Éditeur(s) : Soc Francaise D Ichtyologie
Résumé : The ichtyofauna of Geyser and Zelee coral banks (north of Mozambique canal) was investigated in 1996, this work being the first quantitative study on this area. Quantitative data were collected on 11 stations (mean depth 18 m) by visual observations along 50 m transect, widened to 2 m for small sedentary species, and to 5 m for commercial species with a large action range. The main descriptors of the fish communities (species richness, abundance per species) and the trophic structure (omnivorous, herbivorous, carnivorous, browsers of sessile invertebrates) were described and analysed.A total of 294 fish species, belonging to 43 families were recorded. The species richness varied from 45 to 83 species / station, and the abundance, from 292 to 1322 individuals / 100 m(2), the lower values being recorded on the inner slope and the higher ones on the outer slope. In terms of number of individuals, diurnal planktivores were highly represented at all sites (mean 63.7%). Pomacentridae and Caesionidae were the most abundant families, damselfishes being mainly represented by Chromis ternatensis (mean 73 ind., max, 148 ind. 100 m(2)), C. dimidiata (mean 33 ind., max. 151 ind. / 100 m(2)) and Dascyllus carneus (mean 38 ind., max. 92 ind. 100 m(2)), and fusiliers by Pterocaesio chrysozona (mean 19 ind., max. 128 ind. / 100 m(2)), P. tile (mean 12 ind., max. 38 ind. / 100 m(2)) and Caesio teres (mean 6 ind., max. 32 ind. / 100 m(2)). The high values recorded showed that small and isolated coral banks can support relatively rich fish faunas and substantial populations of individuals. This result may be explained by different factors such as the oceanographic circulation favourable to a localised enrichment of nutrients from surface water, the low human impact, a good coral cover and a high degree of self-recruitment associated with regional recruitment. Nevertheless, the main commercial species such as Lutjanus bohar and Variola louti, observed at each station, were represented at a low density (mean 0.8 ind., max. 6 ind. / 100 m(2) and mean 0.2 ind., max. 0.8 ind. / 100 m(2) respectively). This result may be due to the exploitation of these coral banks between 1990 and 1992, which was interrupted following the fast decreasing output.Such an experience shows us the fragility of these small coral banks and the necessity to establish a rational management of the resource.
Cybium (0399-0974) (Soc Francaise D Ichtyologie), 2002 , Vol. 26 , N. 1 , P. 11-26

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10132/7687.pdf
http://archimer.ifremer.fr/doc/00000/10132/

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
Infectious marine diseases can decimate populations and are increasing among some taxa due to global change and our increasing reliance on marine environments. Marine diseases become emergencies when significant ecological, economic or social impacts occur. We can prepare for and manage these emergencies through improved surveillance, and the development and iterative refinement of approaches to mitigate disease and its impacts. Improving surveillance requires fast, accurate diagnoses, forecasting disease risk and real-time monitoring of disease-promoting environmental conditions. Diversifying impact mitigation involves increasing host resilience to disease, reducing pathogen abundance and managing environmental factors that facilitate disease. Disease surveillance and mitigation can be adaptive if informed by research advances and catalysed by communication among observers, researchers and decision-makers using information-sharing platforms. Recent increases in the awareness of the threats posed by marine diseases may lead to policy frameworks that facilitate the responses and management that marine disease emergencies require.
ISSN: 0962-8436

hal-01282464
https://hal-univ-perp.archives-ouvertes.fr/hal-01282464
DOI : 10.1098/rstb.2015.0364

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : The volcanic island of Mayotte (374 km super(2)) is part of the Comoros Archipelago, which is situated on the North of Mozambic's Canal (Indian Ocean). Mayotte is composed of two islands and some thirty small islands distributed in a lagoon of more than 1,000 km super(2). Being one of the French Republic's Territorial Collectivity, this island is characterized by a very fast demographic evolution (growth rate : 5.8 %), which constitutes the foundation of the development problematic. Most of local halieutic production comes from the reef (nearly 2,000 t in 1999), the technic of "palangrotte" (deep line) is still dominating. The fishing fleet is composed of monoxyl pirogues and polyester fishing boats for the 1,200 fishermen. The first FADs (Fish Aggregating Devices) were installed in 1989. Now, 5 FADs are situated in the lagoon whereas 10 others have been installed out of it. If it is very hard to evaluate economic impact of FAD in Mayotte, their success seems to be limited because of several local constraints : fear to fish out of the lagoon, little interest in tuna, lack of formation. Nevertheless, faced to the demographic evolution and the decrease of the reef ressources, a program of fishing development on FAD has been initiated in 1998, with those following themes : realization of a new prototype of FAD, experimental fishing program with vertical drift "long line", teaching programs for the local fishermen. Today, it is too early to analyze the informations already collected, but the results are very promising, and validate the technical improvement of the new prototype.Original Abstract: L'ile volcanique de Mayotte (374 km super(2)) fait partie de l'archipel des Comores situe au Nord du canal du Mozambique (ocean Indien). Mayotte comprend deux iles et une trentaine d'ilots repartis dans un lagon de plus de 1 000 km super(2). Collectivite territoriale de la Republique francaise, l'ile se caracterise par une evolution demographique tres rapide (taux de croissance: 5,8 %), qui constitue le socle de toutes les problematiques de developpement. L'essentiel de la production halieutique provient du milieu recifal (environ 2 000 t en 1999), la peche a la ligne de fond reste la technique dominante. La flottille de peche est constituee de pirogues monoxyles et de barques polyester pour une population de 1 200 pecheurs. Les premiers DCP mahorais furent installes en 1989. A ce jour, on denombre cinq DCP dans le lagon et dix hors lagon. Il semble que leur succes soit reste limite en raison de plusieurs contraintes locales : peur de la peche hors lagon, peu d'interet pour les poissons pelagiques, manque de formation. Neanmoins, face a l'explosion demographique et a l'appauvrissement des ressources lagonaires, un nouveau programme de developpement de la peche sur DCP a ete initie en 1998. Ce programme comporte trois axes : realisation d'un nouveau prototype de DCP, lancement d'un programme de peches experimentales a la palangre verticale derivante et formation des pecheurs. A ce jour, les informations obtenues sont trop parcellaires pour etre analysees mais les donnees et observations realisees sur les nouveaux dispositifs permettent de valider leur conception technique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15290/12647.pdf
http://archimer.ifremer.fr/doc/00042/15290/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
To estimate the seismic hazard, the geometry (dip, length and orientation) and the dynamics (type of displacements and amplitude) of the faults in the area of interest need to be understood. In this paper, in addition to geomorphologic observations, we present the results of two ground penetrating radar (GPR) campaigns conducted in 2010 and 2011 along the Emeelt fault in the vicinity of Ulaanbaatar, capital of Mongolia, located in an intracontinental region with low deformation rate that induces long recurrence time between large earthquakes. As the geomorphology induced by the fault activity has been highly smoothed by erosion processes since the last event, the fault location and geometry is difficult to determine precisely. However, by using GPR first, a non-destructive and fast investigation, the fault and the sedimentary deposits near the surface can be characterized and the results can be used for the choice of trench location. GPR was performed with a 50 MHz antenna over 2-D lines and with a 500 MHz antenna for pseudo-3-D surveys. The 500 MHz GPR profiles show a good consistency with the trench observations, dug next to the pseudo-3-D surveys. The 3-D 500 MHz GPR imaging of a palaeochannel crossed by the fault allowed us to estimate its lateral displacement to be about 2 m. This is consistent with a right lateral strike-slip displacement induced by an earthquake around magnitude 7 or several around magnitude 6. The 2-D 50 MHz profiles, recorded perpendicular to the fault, show a strong reflection dipping to the NE, which corresponds to the fault plane. Those profiles provided complementary information on the fault such as its location at shallow depth, its dip angle (from 23 • to 35 •) and define its lateral extension. Central Asia is known for its high level of seismic hazards, especially Mongolia, which has been one of the most seismically active intracontinental regions in the world with four large earthquakes (magnitude around 8) along its active faults in the western part of the country during the last century (Khilko et al. 1985). The deformation in Mongolia is located between compressive structures related to the collision and penetration of the Indian plate into the Eurasian plate and extensive structures in the north of the country related with the Baykal rift (Tapponnier & Molnar 1979; Baljinnyam et al. 1993; Schlupp 1996; Bayasgalan & Jackson 1999). The seismic activity observed in the vicinity of Ulaanbaatar (UB), capital of Mongolia, is relatively low compared to the activity observed in western Mongolia. Nevertheless, since 2005, the seismic activity around UB not only has increased, but is also organized (see Fig. 1) at the west of UB along two perpendicular directions, which determine two active faults: Emeelt fault, discovered in 2008 (NNW-SSE direction, 25-km-long minimum and situated about 10 km W of UB) and Hustai fault (WSW–ENE direction, 80 km long, with its NE tip at less than 20 km west of UB); their length and morphology indicate that they can produce earthquakes of magnitude 6.5–7.5 (Schlupp et al. 2012). Most of the Mongolian population (1.2 million over 3 million) is concentrated at UB, which is the main political and economical centre of the country. Hence, the study of seismic hazard and the estimation of the probability of future destructive earthquakes are of primary importance for the country (Dugarmaa et al. 2006). Since the last large earthquake, the faults geomorphology has been highly smoothed by erosional processes and the exact location of the fault plane surface rupture is thus hidden within a several metre wide strip. The GPR method has been proven to give good and useful results to characterize faults by identifying offsets of radar reflections (Malik et al. 2007; Christie et al. 2009; Yalçiner et al. 2013) and
ISSN: 0956-540X

hal-01342629
https://hal.archives-ouvertes.fr/hal-01342629
https://hal.archives-ouvertes.fr/hal-01342629/document
https://hal.archives-ouvertes.fr/hal-01342629/file/Dujardin_Bano_etal_Geoph.%20J.%20Int._2014_final.pdf
DOI : 10.1093/gji/ggu130

Éditeur(s) : HAL CCSD Springer Verlag
Résumé :  
Quantitative genetic diversity is a fundamental component of the interaction between natural populations and their environment. In breeding programmes, quantitative genetic studies on tropical trees have so far focused on fast-growing, light-demanding species, but no information exists on shade-tolerant, slow-growing species. For this study, 27 3-year-old open-pollinated families of the Neotropical shade-tolerant rainforest tree Sextonia rubra were measured in semicontrolled conditions for 20 morphological, growth, and photosynthesis traits; the effect of genetic relatedness, habitat of provenance, and mother tree status on seedling traits was analysed. Nine traits displayed significant genetic effects, while mother tree status and habitat effects were not significant (P>0.05) for an y trait. Estimated heritability varied between 0.14 and 0.28, with growth-related traits having the highest values. Additive genetic variation correlated positively with nonheritable variation, suggesting that ecological-evolutionary factors increasing or decreasing additive genetic variance may also affect nonheritable variation in the same direction. Our results suggest that quantitative genetic variability should be taken into account in ecological studies on, and in the management of, natural tropical rainforests; further research is needed to investigate genetic × environment interactions, in particular from the point of view of the genetic response of shade-tolerant plant species to variations in light availability.
ISSN: 1614-2942

hal-01032145
https://hal.archives-ouvertes.fr/hal-01032145
DOI : 10.1007/s11295-009-0251-8

Éditeur(s) : EDP Sciences
Résumé : For centuries, several species of prawns and crabs have been raised from wild-caught juveniles in coastal brackish-water fish ponds in various countries of south east Asia. The Indonesian "tambaks" are well known examples of such traditional practices. In western countries, since the turn of the century, advances of marine biology and fast increase of marine fisheries enabled the development of large-scale production and release of larval stages of American and European lobsters in a fruitless attempt to restock natural populations. After the Second World War, the increasing demand for crustaceans in United States and Japan was satisfied by opening new prawn fisheries all over the world. A major breakthrough was achieved with the development of hatchery technologies for the penaeid prawn Penaeus japonicus (Hudinaga, 1942 in Japan) and the caridean prawn Macrobrachium rosenbergii (Ling, 1969 in Malaysia), which occurred during the first decades of the second half of this century. Together with the increasing market demand in developed countries for sea food, this led to a considerable interest of both public agencies and private investors in marine shrimp and prawn culture. In western countries, a large number of pioneering commercial ventures, often based on assumptions not scientifically founded, failed. Nevertheless, the aquaculture production of prawns mainly based on wild-caught juveniles increased in South-East Asia and Central America during the 1980s. This overall positive trend should not hide important failures which occurred at a local scale, such as the Taiwanese crisis of 1988 due principally to environmental degradation, resulting in severe disease problems and a near collapse of the farming activity. Following the early period of hatchery technology development, the major scientific achievements were related to food requirements and formulation of compound diets for larvae, juveniles and adults and to a better knowledge of diseases caused by bacteria and several viruses which have been identified from hatcheries and intensive farming ponds. Additional new technological advances have emerged from recent research in the fields of physiology (endocrinology) and genetics. By far, the major part of the world production of marine crustaceans relies on penaeid prawns and, to a lesser extent, on Macrobrachium species. However, some other species of marine crustaceans have potential for aquaculture. The economic aspects of marine crustacean aquaculture should be considered together with those of the fishing industry: market prices are rather similar, depending on the quality of the product. The balance between market demand and production is an important constraint which, in turn, establishes the success of prawn farming. Since the early 1980s, crustacean aquaculture has increased tremendously in both Asia and America: the world production for 1991 approximated 700,000 tons, with more than 600,000 tons from penaeid prawn culture.
Pendant des siècles, quelques espèces de crevettes et de crabes ont été élevées à partir d'individus juvéniles capturés dans le milieu naturel, dans des bassins à poissons d'eau saumâtre de différents pays d'Asie du Sud-Est. Les « tambaks » indonésiens sont des exemples bien connus de ces pratiques traditionnelles. Dans les pays occidentaux, depuis le début du siècle, les progrès réalisés en biologie marine et la croissance rapide des pêches maritimes ont permis le développement de la production à grande échelle de stades larvaires des homards européen et américain, dans une vaine tentative de reconstitution des stocks naturels. Après la Seconde Guerre mondiale, la demande croissante des Etats-Unis et du Japon a été satisfaite par l'ouverture de nouvelles pêcheries de crevettes dans l'océan mondial. Un progrès décisif a été réalisé avec la mise au point des techniques d'écloserie pour la crevette Pénaeidé Penaeus juponicus (Hudinaga, 1942 au Japon) et la crevette Caridé Macrobrachium rosenbergii (Ling, 1969 en Malaisie), qui sont apparues au cours des premières décennies de la seconde moitié de ce siècle. Parallèlement à la demande croissante du marché des pays développés pour les produits de la mer, ce résultat s'est traduit par un intérêt considérable porté à l'élevage des crevettes marines de la part des institutions de recherche et des investisseurs. Dans les pays occidentaux, un grand nombre de tentatives d'élevage commerciales, fondées sur des considérations non scientifiquement établies, ont échoué. Néanmoins, la production aquacole de crevettes reposant sur la capture d'animaux juvéniles dans la nature, s'est développée en Asie du Sud-Est et en Amérique Centrale au cours des années 1980. Cette tendance globalement positive ne doit pas dissimuler les faillites importantes qui se sont produites à l'échelle locale, comme la crise des élevages de Taiwan en 1988, causée principalement par une dégradation de l'environnement, entraînant l'apparition de problèmes pathologiques sévères et une disparition presque totale de l'activité d'élevage. Après la période pionnière du développement de la technologie d'écloserie, les principaux acquis scientifiques concernent les besoins alimentaires et la formulation d'aliments composés pour les larves, les jeunes et les adultes, et une meilleure connaissance des maladies bactériennes et virales qui interviennent dans les écloseries et les fermes d'élevage intensif. De nouveaux progrès techniques complémentaires ont vu le jour à la suite de recherches dans les domaines de la physiologie (endocrinologie) et de la génétique. De loin, la majeure partie de la production mondiale de Crustacés marins repose sur les crevettes Pénaeidés et, dans une moindre mesure, sur des espèces de Macrobrachium. Cependant, quelques autres espèces de Crustacés marins intéressent potentiellement l'aquaculture. Les aspects économiques de l'aquaculture de crustacés marins doivent être considérés avec ceux de l'industrie des pêches maritimes : les prix du marché sont à peu près les mêmes, et dépendent de la qualité du produit. Le rapport entre la demande du marché et la production est une contrainte importante qui à son tour, détermine les conditions du succès de l'élevage de crevettes. Depuis le début des années 1980, l'aquaculture de crustacés a augmenté considérablement en Asie et en Amérique : la production mondiale pour 1991 avoisine 700 000 tonnes, avec plus de 600 000 tonnes provenant des élevages de crevettes Pénaeidés.
Aquatic Living Resources (0990-7440) (EDP Sciences), 1993-10 , Vol. 6 , N. 4 , P. 319-329

Droits : IFREMER-Gauthier-Villars, 1993
http://archimer.ifremer.fr/doc/00190/30119/28587.pdf
DOI:10.1051/alr:1993033
http://archimer.ifremer.fr/doc/00190/30119/

Éditeur(s) : HAL CCSD American Academy of Pediatrics
Résumé : International audience
Vitamin D is an essential hormone for calcium gut absorption. It is also involved in child growth, cancer prevention, immune system responses, and tooth formation. Due to inadequate vitamin D intake and/or decreased sunlight exposure, vitamin D deficiency has resurfaced in developed countries despite known inexpensive and effective preventive methods. Vitamin D deficiency is a common cause of rickets, a condition that affects bone development in children and that can have serious dental complications. Deficiency during pregnancy can cause enamel hypoplasia of primary teeth. Enamel regeneration is currently impossible; hypoplasia is therefore irreversible, and once affected, teeth are prone to fast caries development. Deficiency during early childhood can affect permanent teeth and ensuing caries can sometimes lead to tooth loss at a young age. Oral manifestations of rickets should be diagnosed early by both physicians and dentists to prevent severe dental complications. This case study presents 2 young girls with rickets in early childhood who suffered from subsequent serious tooth decay.
ISSN: 0031-4005

hal-01545477
https://hal.archives-ouvertes.fr/hal-01545477
DOI : 10.1542/peds.2013-0733