Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages , we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction among temperature, precipitation and disturbance shaped species richness and evenness. The effect was manifested through a failure of species richness to increase substantially with temperature in transformed habitats at low precipitation. At low precipitation levels, evenness increased with temperature in undisturbed sites, peaked at medium temperatures in disturbed sites and remained low in transformed sites. In warmer climates with lower rainfall, the effects of increasing disturbance on species richness and evenness were akin to decreases in temperature of up to 98C. Anthropogenic disturbance and ongoing climate change may interact in complicated ways to shape the structure of assemblages, with hot, arid environments likely to be at greatest risk.
ISSN: 0962-8452

hal-01323255
https://hal.archives-ouvertes.fr/hal-01323255
DOI : 10.1098/rspb.2015.0418

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Adolescent obesity is prevalent in Pacific region ethnic groups (European, Melanesian and Polynesian) living in both urban and rural areas. Although body perception is an important factor of weight gain or loss, little is known about the body self-perceptions of Pacific region adolescents. This study therefore evaluated adolescent perceptions of body weight according to ethnicity (European, Melanesian or Polynesian), socioeconomic status (low, intermediate or high) and living area (rural or urban) in New Caledonia.Methods: Sociodemographic and anthropomorphic data from 737 adolescents (351 boys and 386 girls) with ages ranging from 11 to 16 years were collected and analysed. The International Obesity Task Force (IOTF) standards were used to define weight status as normal-weight, underweight or overweight/obese. Weight perception was assessed from detailed questionnaires, with adolescents rating their own weight with the following descriptors: 'about the right weight', 'too heavy', or 'too light'.Results: Results showed that only 8.5% of normal-weight adolescents (7% boys and 10% girls) identifying themselves as ‘too heavy’. Normal-weight Melanesian adolescents were less likely than their European counterparts to assess themselves as too heavy (OR = 0.357). However, half the overweight/obese adolescents underestimated their weight status (53% boys and 48% girls). Weight misperception was associated with ethnicity, socioeconomic status and living area, with gender-specific differences.Conclusions: The results of this study suggest that these sociodemographic factors should be taken into account when designing public health policies and health education school programmes in New Caledonia and, more broadly, the Pacific regio
ISSN: 1471-2458

Droits : info:eu-repo/semantics/OpenAccess
hal-01678909
https://hal.univ-antilles.fr/hal-01678909
https://hal.univ-antilles.fr/hal-01678909/document
https://hal.univ-antilles.fr/hal-01678909/file/Misperception%20of%20weight%20status%20in%20the%20pacific-%20preliminary%20findings%20in%20rural%20and%20urban%2011-%20to%2016-year-olds%20of%20New%20Caledonia%20Ste%CC%81phane%20Frayon%20et%20al%202017.pdf
DOI : 10.1186/s12889-016-3982-0

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project - and avert - future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups - including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems - ). We make site-level summary data available alongside this article. The full database will be publicly available in 2015.
ISSN: 2045-7758

hal-01204216
https://hal.archives-ouvertes.fr/hal-01204216
DOI : 10.1002/ece3.1303
PRODINRA : 280886

Éditeur(s) : HAL CCSD Landes Bioscience
Résumé : International audience
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
Autophagy

hal-00735751
https://hal.archives-ouvertes.fr/hal-00735751
PUBMED : 22966490

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Coral bleaching events threaten coral reef habitats globally and cause severe declines of local biodiversity and productivity.Related to high sea surface temperatures (SST), bleaching events are expected to increase as a consequenceof future global warming. However, response to climate change is still uncertain as future low-latitude climatic conditionshave no present-day analogue. Sea surface temperatures during the Eocene epoch were warmer than forecastedchanges for the coming century, and distributions of corals during the Eocene may help to inform models forecastingthe future of coral reefs. We coupled contemporary and Eocene coral occurrences with information on their respectiveclimatic conditions to model the thermal niche of coral reefs and its potential response to projected climate change.We found that under the RCP8.5 climate change scenario, the global suitability for coral reefs may increase up to 16%by 2100, mostly due to improved suitability of higher latitudes. In contrast, in its current range, coral reef suitabilitymay decrease up to 46% by 2100. Reduction in thermal suitability will be most severe in biodiversity hotspots, especiallyin the Indo-Australian Archipelago. Our results suggest that many contemporary hotspots for coral reefs,including those that have been refugia in the past, spatially mismatch with future suitable areas for coral reefs posingchallenges to conservation actions under climate change.
ISSN: 1354-1013

hal-01145464
https://hal.archives-ouvertes.fr/hal-01145464
DOI : 10.1111/gcb.12868

Éditeur(s) : HAL CCSD BMJ Publishing Group
Résumé : International audience
BACKGROUND: The association between lung cancer and occupational exposure to organic solvents is discussed. Since different solvents are often used simultaneously, it is difficult to assess the role of individual substances. OBJECTIVES: The present study is focused on an in-depth investigation of the potential association between lung cancer risk and occupational exposure to a large group of organic solvents, taking into account the well-known risk factors for lung cancer, tobacco smoking and occupational exposure to asbestos. METHODS: We analysed data from the Investigation of occupational and environmental causes of respiratory cancers (ICARE) study, a large French population-based case-control study, set up between 2001 and 2007. A total of 2276 male cases and 2780 male controls were interviewed, and long-life occupational history was collected. In order to overcome the analytical difficulties created by multiple correlated exposures, we carried out a novel type of analysis based on Bayesian profile regression. RESULTS: After analysis with conventional logistic regression methods, none of the 11 solvents examined were associated with lung cancer risk. Through a profile regression approach, we did not observe any significant association between solvent exposure and lung cancer. However, we identified clusters at high risk that are related to occupations known to be at risk of developing lung cancer, such as painters. CONCLUSIONS: Organic solvents do not appear to be substantial contributors to the occupational risk of lung cancer for the occupations known to be at risk
ISSN: 1351-0711

hal-01282444
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01282444
DOI : 10.1136/oemed-2015-103177
PUBMED : 26911986

Éditeur(s) : HAL CCSD Wiley-VCH Verlag
Résumé : International audience
Deciphering the assembly history of the Milky Way is a formidable task, which becomes possible only if one can produce high-resolution chrono-chemo-kinematical maps of the Galaxy. Data from large-scale astrometric and spectroscopic surveys will soon provide us with a well-defined view of the current chemo-kinematical structure of the Milky Way, but will only enable a blurred view on the temporal sequence that led to the present-day Galaxy. As demonstrated by the (ongoing) exploitation of data from the pioneering photometric missions CoRoT, Kepler, and K2, asteroseismology provides the way forward: solar-like oscillating giants are excellent evolutionary clocks thanks to the availability of seismic constraints on their mass and to the tight age-initial-mass relation they adhere to. In this paper we identify five key outstanding questions relating to the formation and evolution of the Milky Way that will need precise and accurate ages for large samples of stars to be addressed, and we identify the requirements in terms of number of targets and the precision on the stellar properties that are needed to tackle such questions. By quantifying the asteroseismic yields expected from PLATO for red-giant stars, we demonstrate that these requirements are within the capabilities of the current instrument design, provided that observations are sufficiently long to identify the evolutionary state and allow robust and precise determination of acoustic-mode frequencies. This will allow us to harvest data of sufficient quality to reach a 10% precision in age. This is a fundamental pre-requisite to then reach the more ambitious goal of a similar level of accuracy, which will only be possible if we have to hand a careful appraisal of systematic uncertainties on age deriving from our limited understanding of stellar physics, a goal which conveniently falls within the main aims of PLATO's core science.
ISSN: 0004-6337

hal-01541393
https://hal.archives-ouvertes.fr/hal-01541393
ARXIV : 1706.3778
BIBCODE : 2017AN....338..644M
DOI : 10.1002/asna.201713385

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In many orogens, high-pressure (HP) metamorphic rocks such as eclogite occur as lenses in quartzofeldspathic gneiss that equilibrated at much lower pressures. The pressure–temperature–time (P–T–t) history of eclogite relative to host gneiss provides information about mechanisms and timescales of exhumation of orogenic crust. The Montagne Noire of the southern Massif Central, France, is an eclogite–bearing gneiss (migmatite) dome located at the orogen-foreland transition of the Variscan belt. Results of our study show that it contains the youngest eclogite in the orogen, similar in age to migmatite and granite that crystallized under low-pressure conditions. P–T conditions for an exceptionally unaltered eclogite from the central Montagne Noire were estimated using a pseudosection supplemented by garnet–clinopyroxene and Zr-in-rutile thermometry. Results indicate peak P∼1.4 GPaP∼1.4 GPa and View the MathML sourceT∼725°C for Mg-rich garnet rim (50 mol% pyrope) + omphacite (36 mol% jadeite) + rutile + quartz. U–Pb geochronology (LA-ICP-MS) of 16 zoned zircon grains yielded ∼360 Ma (4 cores) and ∼315 Ma (12 rims and cores). Rare earth element abundances determined by LA-ICP-MS for dated zircon are consistent with crystallization of ∼315 Ma zircon under garnet-stable, plagioclase-unstable conditions that we interpret to indicate high pressure; in contrast, the ∼360 Ma zircon core corresponds to crystallization under lower pressure plagioclase-stable conditions. Based on garnet zoning and inclusion suites, rutile textures and Zr zoning, P–T results, and zircon petrochronology, we interpret the ∼315 Ma date as the age of eclogite-facies metamorphism that only slightly preceded dome formation and crystallization at 315–300 Ma. This age relation indicates that eclogite formation at high pressure and migmatite dome emplacement at low pressure were closely spaced in time. We propose that collapse-driven material transfer from the hot orogen to the cool foreland resulted in thickening of the orogen edge, leading to eclogite facies metamorphism of the deep crust. Soon after, the low-viscosity partially molten crust flowed from the plateau toward the foreland, incorporating and exhuming eclogite. The P–T–t history of the Montagne Noire eclogite shows that some dome material ascended from >40 km depth to shallow crustal levels, likely in a single decompression event, and that migmatite domes are therefore very efficient at exhuming the deep crust.
ISSN: 0012-821X

hal-01243499
https://hal.archives-ouvertes.fr/hal-01243499
DOI : 10.1016/j.epsl.2015.08.026

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
New U–Pb monazite, zircon, and xenotime ages date the Late Carboniferous crystallization of the anatectic Vialais granite in the Montagne Noire Axial Zone and the high-temperature deformation and metamorphism of the augen gneiss (Ordovician granite protolith) from which the granite was likely derived. The U–Pb monazite ages obtained from the augen gneiss (308 ± 3 Ma), late kinematic Vialais granite (303 ± 4 Ma), and post-kinematic leucogranite (298 ± 2 Ma), bracket the high-temperature deformation and metamorphism at ~ 310–300 Ma, clearly postdating regional contraction and nappe emplacement (> 320 Ma). The planar–linear and locally linear fabrics in the augen gneiss outline a regional-scale double dome structure (Caroux and Espinouse sub-domes) containing smaller (km-scale) upright folds. Compared to the Caroux sub-dome, the larger, migmatitic Espinouse sub-dome contains abundant leucosome, leucogranite bodies and late-kinematic intrusions (Vialais granite). The Vialais granite displays a weak magmatic foliation that defines the main layering of the Espinouse migmatite. Ellipsoidal quartz–sillimanite nodules concentrated above the roof of the granite recorded an increment of strain (vertical shortening, E–NE elongation) during granite emplacement and crystallization, consistent with the extension event that exhumed the domes. These new geochronological and structural data suggest that the Montagne Noire double dome formed in a pull-apart structure within a dextral strike–slip system. Upright folding in the sub-domes has been traditionally assigned to a regional contraction event; alternatively, we propose that local contraction is associated with the convergence of low-viscosity crust beneath the upper crust pull-apart. Dynamic models of extension of hot crust indicate that contraction at depth is generated by flow of low-viscosity orogenic crust converging and rising to fill the gap created by upper crust extension. This interpretation solves the long-standing problem of apparent coeval contraction and extension in the Montagne Noire double dome and establishes migmatite dome emplacement in strike–slip corridors as a style of late Variscan tectonics.
ISSN: 0040-1951

insu-01112009
https://hal-insu.archives-ouvertes.fr/insu-01112009
DOI : 10.1016/j.tecto.2014.12.002

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : The area of forest plantations is increasing worldwide helping to meet timber demand and protect natural forests. However, with global change, monospecific plantations are increasingly vulnerable to abiotic and biotic disturbances. As an adaption measure we need to move to plantations that are more diverse in genotypes, species, and structure, with a design underpinned by science. TreeDivNet, a global network of tree diversity experiments, responds to this need by assessing the advantages and disadvantages of mixed species plantations. The network currently consists of 18 experiments, distributed over 36 sites and five ecoregions. With plantations 1-15 years old, TreeDivNet can already provide relevant data for forest policy and management. In this paper, we highlight some early results on the carbon sequestration and pest resistance potential of more diverse plantations. Finally, suggestions are made for new, innovative experiments in understudied regions to complement the existing network.
ISSN: 0044-7447

hal-01204232
https://hal.archives-ouvertes.fr/hal-01204232
DOI : 10.1007/s13280-015-0685-1
PRODINRA : 324368
PUBMED : 26264716

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : Ants have evolved venoms rich in peptides and proteins used for predation, defense, and communication. However, they remain extremely understudied due to the minimal amount of venom secreted by each ant. The present study investigated the differences in the proteome and peptidome of the venom from the bullet ant, Paraponera clavata. Venom samples were collected from a single colony either by manual venom gland dissection or by electrical stimulation and were compared using proteomic methods. Venom proteins were separated by 2D-PAGE and identified by nanoLC-ESI-QTOF MS/MS. Venom peptides were initially separated using C18 reversed-phase high-performance liquid chromatography, then analyzed by MALDI-TOF MS. The proteomic analysis revealed numerous proteins that could be assigned a biological function (total 94), mainly as toxins, or roles in cell regulation and transport. This investigation found that ca. 73% of the proteins were common to venoms collected by the two methods. The peptidomic analysis revealed a large number of peptides (total 309) but with <20% shared by the two collection methods. There was also a marked difference between venoms obtained by venom gland dissection from different ant colonies. These findings demonstrate the rich composition and variability of P. clavata venom.
ISSN: 1535-3893

hal-01603415
https://hal.archives-ouvertes.fr/hal-01603415
DOI : 10.1021/acs.jproteome.6b00948
PRODINRA : 406775
PUBMED : 28118015

Éditeur(s) : HAL CCSD American Association for the Advancement of Science
Résumé : The biodiversity-productivity relationship (BPR) is foundational to our understanding of the global extinction crisis and its impacts on ecosystem functioning. Understanding BPR is critical for the accurate valuation and effective conservation of biodiversity. Using ground-sourced data from 777,126 permanent plots, spanning 44 countries and most terrestrial biomes, we reveal a globally consistent positive concave-down BPR, showing that continued biodiversity loss would result in an accelerating decline in forest productivity worldwide. The value of biodiversity in maintaining commercial forest productivity alone-US$166 billion to 490 billion per year according to our estimation-is more than twice what it would cost to implement effective global conservation. This highlights the need for a worldwide reassessment of biodiversity values, forest management strategies, and conservation priorities.
ISSN: 0036-8075

hal-01607784
https://hal.archives-ouvertes.fr/hal-01607784
DOI : 10.1126/science.aaf8957
PRODINRA : 389856

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
ternational Ocean Discovery Program (IODP) Expedition 352 recovered a high-fidelity record of volcanism related to subduction initiation in the Bonin fore-arc. Two sites (U1440 and U1441) located in deep water nearer to the trench recovered basalts and related rocks; two sites (U1439 and U1442) located in shallower water further from the trench recovered boninites and related rocks. Drilling in both areas ended in dolerites inferred to be sheeted intrusive rocks. The basalts apparently erupted immediately after subduction initiation and have compositions similar to those of the most depleted basalts generated by rapid sea-floor spreading at mid-ocean ridges, with little or no slab input. Subsequent melting to generate boninites involved more depleted mantle and hotter and deeper subducted components as subduction progressed and volcanism migrated away from the trench. This volcanic sequence is akin to that recorded by many ophiolites, supporting a direct link between subduction initiation, fore-arc spreading, and ophiolite genesis.
ISSN: 0020-6814

hal-01685628
https://hal.archives-ouvertes.fr/hal-01685628
DOI : 10.1080/00206814.2016.1276482

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : The acquisition of reliable data sets representative of hydrological regimes and their variations is a critical concern for water resource assessment. For the subsurface, traditional approaches based on probe measurements, core analysis, and well data can be laborious, expensive, and highly intrusive, while only yielding sparse data sets. For this study, an innovative field survey, merging relative microgravimetry, magnetic resonance soundings, and hydrological measurements, was conducted to evaluate both surface and subsurface water storage variations in a semiarid Sahelian area. The instrumental setup was implemented in the lower part of a typical hillslope feeding to a temporary pond. Weekly measurements were carried out using relative spring gravimeters during 3 months of the rainy season in 2009 over a 350 × 500 m2 network of 12 microgravity stations. Gravity variations of small to medium amplitude (≤220 nm s−2) were measured with accuracies better than 50 nm s−2, revealing significant variations of the water storage at small time (from 1 week up to 3 months) and space (from a couple of meters up to a few hundred meters) scales. Consistent spatial organization of the water storage variations were detected, suggesting high infiltration at the outlet of a small gully. The comparison with hydrological measurements and magnetic resonance soundings involved that most of the microgravity variations came from the heterogeneity in the vadose zone. The results highlight the potential of time lapse microgravity surveys for detecting intraseasonal water storage variations and providing rich space-time data sets for process investigation or hydrological model calibration/evaluation
ISSN: 0043-1397

hal-00857351
https://hal.archives-ouvertes.fr/hal-00857351
DOI : 10.1002/wrcr.20235

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Marine organisms are under threat globally from a suite of anthropogenic sources, but the current emphasis on global climate change has deflected the focus from local impacts. While the effect of increased sedimentation on the settlement of coral species is well studied, little is known about the impact on larval fish. Here, the effect of a laterite “red soil” sediment pollutant on settlement behaviour and post-settlement performance of reef fish was tested. In aquarium tests that isolated sensory cues, we found significant olfaction-based avoidance behaviour and disruption of visual cue use in settlement-stage larval fishat 50 mg L−1, a concentration regularly exceeded in situ during rain events. In situ light trap catches showed lower abundance and species richness in the presence of red soil, but were not significantly different due to high variance in the data. Prolonged exposure to red soil produced altered olfactory cue responses, whereby fish in red soil made a likely maladaptive choice for dead coral compared to controls where fish chose live coral. Other significant effects of prolonged exposure included decreased feeding rates and body condition. These effects on fish larvae reared over 5 days occurred in the presence of a minor drop in pH and may be due to the chemical influence of the sediment. Our results show that sediment pollution of coral reefs may have more complex effects on the ability of larval fish to successfully locate suitable habitat than previously thought, as well as impacting on their post-settlement performance and, ultimately, recruitment success.
ISSN: 0029-8549

hal-01346933
https://hal-uvsq.archives-ouvertes.fr/hal-01346933
https://hal-uvsq.archives-ouvertes.fr/hal-01346933/document
https://hal-uvsq.archives-ouvertes.fr/hal-01346933/file/ms%20O%27Connor%20et%20al%20%202014%20%28Oecologia%29.pdf
PUBMED : 26080759

Éditeur(s) : HAL CCSD Elsevier
Résumé : Handheld energy dispersive portable X-ray spectrometers (pXRF) are generally designed and used for qualitative survey applications. We developed shipboard quantitative analysis protocols for pXRF and employed the instrument to make over 2000 individual abundance measurements for a selection of major and trace elements on over 1200 m of recovered core during the eight weeks of the International Ocean Discovery Program (IODP) Expedition 352 to the Izu-Bonin forearc. pXRF analytical performance, accuracy and precision were found to be the same on powdered rock samples and on freshly cut rock surfaces, and sample results were similar within error to measurements made via shipboard ICP-OES analysis save at low abundance levels for a few elements. Instrument performance was optimal for elements between Z = 19 and Z = 40, and the system yielded reproducible data for K, Ca, Ti, V, Cr, Mn, Fe, Cu, Zn, Rb, Sr, and Zr on both powdered samples and rock surfaces. Working curves developed via pXRF measurement of a suite of geologic standard reference materials and well-characterized lavas permitted accurate quantitative measurements for many of the examined elements on both sample powders and rock surfaces. Although pXRF has been sporadically employed on previous cruises, Expedition 352 is the first time a detailed, high-density chemostratigraphy of recovered core samples was collected using pXRF measurements of rock core surfaces. These high-resolution data allowed the recognition of chemically distinct eruptive units in near real-time. The rapid identification of geochemical trends vastly improved our selection of samples for shipboard and shore-based analysis, permitted a more comprehensive interpretation of our Expedition results, and provided key decision-making information for drilling operations.
ISSN: 0009-2541

hal-01553188
https://hal.archives-ouvertes.fr/hal-01553188
DOI : 10.1016/j.chemgeo.2017.01.007

Éditeur(s) : HAL CCSD Coastal Education and Research Foundation, Inc.
Résumé : International audience
Morphodynamics of sandy, macrotidal, embayed beaches is complex because of the numerous physical processes interacting at the same location over a wide range of temporal scales. As most of these processes are controlled by beach morphology, dynamic feedbacks are generally observed between hydro- and morphodynamics. Investigating short-term processes is essential in order to improve long term morphological prediction. A key question is to understand how beach slope reacts to forcing conditions, in particular the response time of the beach profile, how long the transient state lasts. This study deals with the spatial and temporal responses of beach morphology to varying incident conditions. Here we report main observations, preliminary results and on-going investigations on the DYNATREZ1 field campaign, which was conducted in the framework of the National Observation Service Dynalit. Beach profiles are shown to adapt rapidly to forcing conditions, within two days, with more intense variations observed in the high tide swash zone. The presence of infragravity waves and their dissipation on the beach is highlighted. It is likely that the very large variability in beach slope observed over a single neapspring cycle is responsible for the accordingly large variability in wave skewness, asymmetry and breaking processes, and thus in sediment fluxes and morphological changes.
ICS 2016 Sydney
Sydney, Australia

hal-01254465
https://hal.archives-ouvertes.fr/hal-01254465
DOI : 10.2112/SI75-075.1

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : CABI:20153174020
Understanding how plants are constructed - i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals - is essential for modeling plant growth, carbon stocks, and energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass And Allometry Database (BAAD) for woody plants. The BAAD contains 259634 measurements collected in 176 different studies, from 21084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at the time of publication. Thus, the BAAD contains data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) plants from 0.01-100 m in height were included; and (iv) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed sub-sampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem cross-section including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation.
ISSN: 0012-9658

hal-01535227
https://hal.archives-ouvertes.fr/hal-01535227
DOI : 10.1890/14-1889.1
PRODINRA : 306122

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A suite of eclogite xenoliths from the Roberts Victor kimberlite (South Africa) is remarkable for its high abundances of base metal sulfides (BMS; up to 2 modal %). However, while sulfides are nearly ubiquitous in Type I eclogites (garnet > 0.07% Na2O), Type II eclogites (garnet < 0.07% Na2O) systematically lack sulfides. Two different sulfide assemblages are recognised within the Type I xenolith suite. Both populations are polyphase Cu-Ni-Fe sulfides, one characterised by the pyrrhotite (Po) + pentlandite (Pn) + chalcopyrite (Cp) assemblage and the other by the smythite/violarite (Smy/Vi) + (Ni)pyrite (Py) + Cp assemblage. The latter is the most abundant assemblage and reflects the supergene alteration of the "primary" Po + Pn + Cp assemblage. This process overprints the original composition of the sulfides by remobilising elements such as S, Fe, Ni, Se and Te. In the Type I eclogites, BMS occur as inclusions within silicates (garnet and clinopyroxene) and as interstitial grains. No chemical differences were observed between enclosed and interstitial sulfides. However, their relative abundances are correlated, indicating a similar origin. The Po + Pn + Cp assemblage is identical to eclogitic sulfides previously described in some Roberts Victor diamonds. Silicate-enclosed sulfides could appear to be early phases, but they are restricted to the outer parts of the silicate grains, suggesting a late incorporation during partial recrystallisation of silicate phases, induced by fluid-rock percolation-reaction during a metasomatic event. Positive whole-rock correlations between Se and (La/Sm)N⁎ and between Cu and ΣLREEN⁎ indicate a direct link between sulfide content and the enrichment of Mg + incompatible elements in the Type I eclogites, further supporting a metasomatic origin of the sulfide component. Similarly, a negative correlation between ΣLREEN⁎ and Cucpx implies that the metasomatic agent was at least partially composed of S-rich fluid (e.g. H2S, SO2) that reacted with the rock and leached Cu out of the silicates. The coupling between sulfides and LREE in the Type I eclogites, as well as the absence of sulfides and metasomatic features (e.g. unequilibrated grain boundaries, melt pockets, fluid inclusions, phlogopite) in the Type II eclogites, demonstrate that Type II eclogites did not undergo such a metasomatic event and therefore may represent the less-modified protoliths of Type I eclogites.
ISSN: 0009-2541

hal-00903856
https://hal.archives-ouvertes.fr/hal-00903856
DOI : 10.1016/j.chemgeo.2013.06.015

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Marine organisms are under threat globally from a suite of anthropogenic sources, but the current emphasis on global climate change has deflected the focus from local impacts. While the effect of increased sedimentation on the settlement of coral species is well studied, little is known about the impact on larval fish. Here, the effect of a laterite “red soil” sediment pollutant on settlement behaviour and post-settlement performance of reef fish was tested. In aquarium tests that isolated sensory cues, we found significant olfaction-based avoidance behaviour and disruption of visual cue use in settlement-stage larval fish at 50 mg L−1, a concentration regularly exceeded in situ during rain events. In situ light trap catches showed lower abundance and species richness in the presence of red soil, but were not significantly different due to high variance in the data. Prolonged exposure to red soil produced altered olfactory cue responses, whereby fish in red soil made a likely maladaptive choice for dead coral compared to controls where fish chose live coral. Other significant effects of prolonged exposure included decreased feeding rates and body condition. These effects on fish larvae reared over 5 days occurred in the presence of a minor drop in pH and may be due to the chemical influence of the sediment. Our results show that sediment pollution of coral reefs may have more complex effects on the ability of larval fish to successfully locate suitable habitat than previously thought, as well as impacting on their post-settlement performance and, ultimately, recruitment success.
ISSN: 0029-8549

hal-01270670
https://hal-univ-perp.archives-ouvertes.fr/hal-01270670
DOI : 10.1007/s00442-015-3367-6