Éditeur(s) : HAL CCSD Wiley
Résumé : SUBSURF
International audience
Similarity of form between subaerial and submarine landscapes affected by erosion could suggest similarities in the process of erosion, such as by runoff and sedimentary flows, respectively. On the other hand, if aspects of form vary, its characteristics may be used to identify the environmental origin of erosion. Towards these goals, this contribution addresses the morphology of submarine volcanoes (seamounts) with widely differing histories of erosion. One set from the Pacific Ocean never exposed above sea level includes Cretaceous-age seamounts near Hawai'i (including Apu'upu'u Seamount), two seamounts of < 3 Ma in age near a mid-ocean ridge and the 11-4 Ma Jasper Seamount. These seamounts are all isolated from continents and hence from any erosion associated with mass wasting of unstable terrigenous deposits. In such isolated submarine environments, surfaces erode slowly from in situ weathering, mass wasting and scouring by sedimentary flows initiated by slope failure in pelagic or bedrock materials. The Pacific seamounts are compared with Valencia Seamount in the western Mediterranean, exposed subaerially for 100-400 k.y. during the Messinian Salinity Crisis before 5 Ma. Multibeam and deeply towed sidescan sonar data of Valencia Seamount reveal features typical of subaerial erosion of volcanic islands, such as canyons and relatively uneroded sectors (planezes) between them. Using a simple topographical reconstruction, the apparent erosion depth typically reaches 100 m within canyons and up to 180 m in places. Whereas the younger Pacific seamounts do not show these erosional features, the much older Cretaceous seamounts do have channels, which in one example suggests up to 200 m of incision. Both Valencia and Apu'upu'u seamounts have channel longitudinal profiles that are steep and typically linear to concave upwards. The erosion depth of Apu'upu'u Seamount is significant, despite the seamount's persistent submarine environment, because of its greater age, steeper flanks and greater contributing areas to channels compared with Valencia Seamount. These results illustrate that the channel morphology resulting from submarine erosion can become similar to that produced by subaerial erosion given sufficient time.
ISSN: 0950-091X

hal-00411425
https://hal.archives-ouvertes.fr/hal-00411425
DOI : 10.1111/j.1365-2117.2008.00355.x

Éditeur(s) : HAL CCSD Linnean Society of London
Résumé : International audience
Although migratory pelagic fishes generally exhibit little geographic differentiation across oceans, as expected from their life-history (broadcast spawning, pelagic larval life, swimming ability of adults) and the assumed homogeneity of the pelagic habitat, exceptions to the rule deserve scrutiny. One such exception is the narrow-barred Spanish mackerel (Scomberomorus commerson), where strong genetic heterogeneity at the regional scale has been previously reported. We investigated the genetic composition of S. commerson across the Indo-West Pacific range using control-region sequences (including previously published datasets), cytochrome-b gene partial sequences, and eight microsatellite loci, to further explore its phylogeographic structure. All haplotypes sampled from the Indo-Malay-Papua archipelago (IMPA) and the southwestern Pacific coalesced into a clade (Clade II) that was deeply separated (14.5% nucleotide divergence) from a clade grouping all haplotypes from the Persian Gulf and Oman Sea (Clade I). Such a high level of genetic divergence suggested the occurrence of two sister-species. Further phylogeographic partition was evident between the western IMPA and the regions sampled east and south of it, i.e. northern Australia, West Papua, and the Coral Sea. Strong allele-frequency differences were found between local populations in the southwestern Pacific, both at the mitochondrial locus (ΦST=0.282-0.609) and at microsatellite loci (^θ=0.202-0.313). Clade II consisted of four deeply divergent subclades (9.0-11.8% nucleotide divergence for the control region; 0.3-2.5% divergence at the cytochrome b locus). Mitochondrial sub-clades within Clade II generally had narrow geographic distribution, demonstrating further genetic isolation. However, one particular haplogroup within Clade II was present throughout the central Indo-West Pacific; that haplogroup was found to be sister-group to an haplogroup restricted to West Papua and the Coral Sea, yielding evidence of recent secondary westward colonization. Such a complex structure is in sharp contrast with the generally weak phylogeographic patterns uncovered to date in other widely distributed, large pelagic fishes with pelagic eggs and larvae. We hypothesize that in S. commerson and possibly other Scomberomorus species, philopatric migration may play a role in maintaining the geographic isolation of populations by annihilating the potential consequences of passive dispersal.
Biological Journal of the Linnean Society

ird-00759711
http://hal.ird.fr/ird-00759711
http://hal.ird.fr/ird-00759711/document

Éditeur(s) : HAL CCSD Linnean Society of London
Résumé : International audience
Although migratory pelagic fishes generally exhibit little geographic differentiation across oceans, as expected from their life-history (broadcast spawning, pelagic larval life, swimming ability of adults) and the assumed homogeneity of the pelagic habitat, exceptions to the rule deserve scrutiny. One such exception is the narrow-barred Spanish mackerel (Scomberomorus commerson), where strong genetic heterogeneity at the regional scale has been previously reported. We investigated the genetic composition of S. commerson across the Indo-West Pacific range using control-region sequences (including previously published datasets), cytochrome-b gene partial sequences, and eight microsatellite loci, to further explore its phylogeographic structure. All haplotypes sampled from the Indo-Malay-Papua archipelago (IMPA) and the southwestern Pacific coalesced into a clade (Clade II) that was deeply separated (14.5% nucleotide divergence) from a clade grouping all haplotypes from the Persian Gulf and Oman Sea (Clade I). Such a high level of genetic divergence suggested the occurrence of two sister-species. Further phylogeographic partition was evident between the western IMPA and the regions sampled east and south of it, i.e. northern Australia, West Papua, and the Coral Sea. Strong allele-frequency differences were found between local populations in the southwestern Pacific, both at the mitochondrial locus (ΦST=0.282-0.609) and at microsatellite loci (^θ=0.202-0.313). Clade II consisted of four deeply divergent subclades (9.0-11.8% nucleotide divergence for the control region; 0.3-2.5% divergence at the cytochrome b locus). Mitochondrial sub-clades within Clade II generally had narrow geographic distribution, demonstrating further genetic isolation. However, one particular haplogroup within Clade II was present throughout the central Indo-West Pacific; that haplogroup was found to be sister-group to an haplogroup restricted to West Papua and the Coral Sea, yielding evidence of recent secondary westward colonization. Such a complex structure is in sharp contrast with the generally weak phylogeographic patterns uncovered to date in other widely distributed, large pelagic fishes with pelagic eggs and larvae. We hypothesize that in S. commerson and possibly other Scomberomorus species, philopatric migration may play a role in maintaining the geographic isolation of populations by annihilating the potential consequences of passive dispersal.
ISSN: 0024-4066

ird-00759711
http://hal.ird.fr/ird-00759711
http://hal.ird.fr/ird-00759711v2/document
http://hal.ird.fr/ird-00759711/file/FauvelotBorsa_Scomberomorus%20commerson%20p%20HAL.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Geographical distribution of parasite species can provide insights into the evolution and diversity of parasiticcommunities. Biogeography of marine parasites is poorly known, especially because it requires anunderstanding of host-parasite interactions, information that is rare, especially over large spatial scales.Here, we have studied the biogeographical patterns of dactylogyrid parasites of chaetodontids, one of themost well-studied fish families, in the tropical Indo-west Pacific region. Dactylogyrid parasites were collectedfrom gills of 34 butterflyfish species (n = 560) at nine localities within an approximate area of62 million km2. Thirteen dactylogyrid species were identified, with richness ranging from 6 to 12 speciesat individual localities. Most dactylogyrid communities were dominated by Haliotrema angelopterum orHaliotrema aurigae, for which relative abundance was negatively correlated (q = !0.59). Parasite richnessand diversity were highest in French Polynesia and the Great Barrier Reef (Australia) and lowest in Palau.Three biogeographic regions were identified based on dactylogyrid dissimilarities: French Polynesia,characterised by the dominance of H. angelopterum, the western Pacific region dominated by H. aurigae,and Ningaloo Reef (Australia), dominated by Euryhaliotrema berenguelae. Structure of host assemblageswas the main factor explaining the dissimilarity (turnover and nestedness components of the Bray-Curtis dissimilarity and overall Bray-Curtis dissimilarity) of parasite communities between localities,while environment was only significant in the turnover of parasite communities and overall dissimilarity.Spatial structure of localities explained only 10% of the turnover of parasite communities. The interactionof the three factors (host assemblages, environment and spatial structure), however, explained the highestamounts of variance of the dactylogyrid communities, indicating a strong colinearity between the factors.Our findings show that spatial arrangement of chaetodontid dactylogyrids in the tropical Indo-westPacific is primarily characterised by the turnover of the main Haliotrema spp., which is mainly explainedby the structure of host assemblages.
ISSN: 0020-7519

hal-01562156
https://hal-univ-perp.archives-ouvertes.fr/hal-01562156
DOI : 10.1016/j.ijpara.2017.01.006

Éditeur(s) : Université de la Réunion
Résumé : The green turtle (Chelonia mydas) is an emblematic species of marine life. However, nowadays it is subject to many threats (poaching, by-catch). Even if there is deep growing measures for its protection, the green turtle still is an endangered species and it is listed in Appendix I of Washington Convention (CITES). In order to elaborate efficient conservation and management plans, perfect knowledge of green turtle biology, but also of its population structure and their characteristics, are needed. In this thesis, we have assessed genetic structure of green turtle populations in the South-Western Indian Ocean by using genetic tools. In all, 1551 tissue samples have been collected from our study zone and from our control site French Polynesia (37 samples). All kinds if individuals were sampled (except males in reproductive phase) from 15 sampling sites including nesting, foraging, and immature development site. We used both control region of mitochondrial DNA and 6 microsatellite loci to better infer maternal and paternal lineages. We identified 29 haplotypes in the South-Western Indian Ocean. They are distributed in 3 independent and highly divergent clades, including one composed with haplotypes from Atlantic Ocean. For 7 of these haplotypes, it was the first time they were detected in the study zone. Fifteen haplotypes were previously undescribed, distributed in all the 3 clades. These new haplotypes seem to be specific to the South-Western Indian Ocean, which is then an original zone. Besides, we found a high allelic richness. These results show the South-western Indian Ocean is rich and very diversified. This region plays an important role in the global diversity of the species. The South-Western Indian Ocean is one of the two contact zones presently known between the two metapopulations of green turtles (Atlantic-Mediterranean and Indo-Pacific). This contact induces a genetic cline based on CM8 (Atlantic) and C3 (Indo-Pacific) haplotype frequencies. Analysis of the microsatellite differentiation between individuals provides evidence of genetic exchanges between the two metapopulations in the region. The South-Western Indian Ocean participates to green turtle global genetic mixing. Studying the influence of several intrinsic and extrinsic factors on population structuring provides useful information for management plan elaboration. We found no significant difference between genetic structures of foraging females and males, contrary to immature turtles which seem to be organised in 'regional pools'. This organisation could be due to both immature natal homing and influence of oceanic currents. High mitochondrial differentiation of nesting females and low global microsatellite differentiation of our samples indicate male-mediated gene flow among populations of the study zone. The genetic composition of a sampling site presents no significant variation along the year, even if we could notice some trends. Nevertheless, it can be significantly different from a year to an other one. This may result from alternation of distinct populations on the same site. We noticed different evolution in 10 or 20 years of the genetic composition depending on the sampling site. Geographic distance seems not to have significant influence on population structuring concerning microsatellite markers. Nesting females of Saziley Beach (Mayotte Island, Comoros Archipelago) present genetic divergence from females nesting in the two other sampled beaches of this island. The observed population structure shows no contradiction with the organisation of oceanic currents in the South-Western Indian Ocean. Comparing the results from the two genetic markers used, we identified 8 genetic differentiated clusters of turtles in the study zone and at least 6 distinct populations. These clusters constitute 8 potential management units (MUs) which could serve as basis in the elaboration of conservation and management plans.
La tortue verte (Chelonia mydas) constitue l'un des espèces emblématiques de la vie marine, pourtant de nombreuses menaces pèsent de nos jours encore sur sa survie (braconnage, captures accidentelles). Ainsi, malgré l'essor de mesures de protection menées à travers pour sa sauvegarde, la tortue verte constitue une espèce 'en danger d'extinction' et figure dans l'Annexe I de la Convention de Washington (CITES). Afin d'élaborer des plans de gestion et de conservation qui soient efficaces, il est important d'avoir une parfaite connaissance de la biologie de la tortue verte, mais aussi de la structure de ses populations et de leurs caractéristiques. C'est dans ce cadre que s'inscrit la présente étude. L'objectif de cette étude était d'acquérir des connaissances sur la structure des populations de tortues vertes dans le sud-ouest de l'océan Indien grâce à l'utilisation de l'outil génétique. Au total, 1551 échantillons de tissu ont été collectés dans la zone d'étude et dans notre site témoin la Polynésie française (37 échantillons). Toutes les catégories d'individus ont été échantillonnées (excepté les mâles en phase de reproduction) et les 15 sites d'échantillonnage comprennent à la fois des sites de ponte, d'alimentation et de développement pour les immatures. Deux types de marqueurs ont été utilisés : la région contrôle de l'ADN mitochondrial et 6 loci microsatellites, afin d'appréhender au mieux l'apport des lignées maternelles et paternelles. Nous avons pu mettre en évidence la présence dans le sud-ouest de l'océan Indien de 29 haplotypes distincts, appartenant à trois clades fortement divergents dont l'un constitué d'haplotypes originaires de l'océan Atlantique. Parmi ces haplotypes, 7 ont été détectés pour la première fois dans la zone d'étude, et 15 autres n'ont jamais été précédemment décrits chez cette espèce. Ils sont présents dans chacun des 3 clades d'haplotypes. Ces nouveaux haplotypes semblent spécifiques à la région, et en font une zone originale. On observe par ailleurs une grande richesse allélique dans les effectifs analysés. Ces résultats montrent que le sud-ouest de l'océan Indien est une zone riche et très diversifiée. Cette région joue un rôle important dans la diversité génétique globale de l'espèce. Le sud-ouest de l'océan Indien constitue l'une des deux seules zones connues à l'heure actuelle de contact entre les deux métapopulations de tortues vertes (Atlantique-Méditerranée et Indo-Pacifique). Ce contact a entraîné la formation d'un cline génétique portant principalement sur les fréquences relatives des haplotypes CM8 (Atlantique) et C3 (Indo-Pacifique). Les résultats obtenus lors de l'analyse microsatellite de la différenciation entre les individus originaires des deux métapopulations montrent que le sud-ouest de l'océan Indien constitue une zone d'échanges génétiques entre les deux métapopulations, participant au brasage génétique de l'espèce. L'étude de facteurs, intrinsèques et extrinsèques, pouvant influencer la structuration des populations apportent de nombreuses informations qui pourraient s'avérer utiles lors de l'élaboration de plans de gestion. La structure des femelles et des mâles en alimentation ne diffère pas, contrairement à celle des immatures qui semble s'organiser en 'pools régionaux' qui seraient le fruit de l'interaction d'un comportement de philopatrie et d'une influence des courants océaniques. La forte différenciation mitochondriale des femelles en ponte et la très faible différenciation microsatellite observée à l'échelle de la région, indiquent l'existence de flux de gènes via les mâles. La composition génétique d'un site ne varie pas de manière significative au cours de l'année. Par contre, elle peut varier d'une année à l'autre, signifiant l'alternance dans certains sites de ponte de plusieurs populations distinctes. L'évolution de la composition génétique d'un groupe, au cours de 10 ou 20 ans, diffère selon le site considéré. La distance ne semble pas influencer de manière significative la structuration des populations au niveau microsatellite. Les femelles en ponte sur la plage de Saziley (Mayotte) diffèrent génétiquement de celles pondant sur les deux autres plages de l'île. La structure observée des populations est en accord avec l'organisation des courants océanique dans la région. La confrontation des résultats obtenus à partir des deux marqueurs génétiques utilisés, permet la détermination de 8 ensembles génétiquement différenciés dans la zone d'étude et l'identification d'au moins 6 populations distinctes. Ces ensembles constituent autant d'unités de gestion (MUs) potentielles qui pourront servir de base à l'élaboration de plans de gestion et de conservation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-3532.pdf
http://archimer.ifremer.fr/doc/00000/3532/

Éditeur(s) : Elsevier Science Bv
Résumé : The breakup of Pangea and onset of growth of the Pacific plate led to several paleoenvironmental feedbacks, which radically affected paleoclimate and ocean chemistry during the Jurassic. Overall, this period was characterized by intense volcanic degassing from large igneous provinces and circum-Panthalassan arcs, new oceanic circulation patterns, and changes in heat and humidity transports affecting continental weathering. Few studies, however, have attempted to unravel the global interactions linking these processes over the long-term. In this paper, we address this question by documenting the global changes in continental drainage and surface oceanic circulation for the whole Jurassic period. For this purpose, we present 53 new neodymium isotope values (εNd(t)) measured on well-dated fossil fish teeth, ichthyosaur bones, phosphatized nodules, phosphatized ooids, and clastic sediments from Europe, western Russia, and North America. Combined with an extensive compilation of published εNd(t) data, our results show that the continental sources of Nd were very heterogeneous across the world. Volcanic inputs from a Jurassic equivalent of the modern Pacific Ring of Fire contributed to radiogenic εNd(t) values (− 4 ε-units) in the Panthalassa Ocean. For the Tethyan Ocean, the average surface seawater signal was less radiogenic in the equatorial region (− 6.3), and gradually lower toward the epicontinental peri-Tethyan (− 7.4), western Russian (− 7.4) and Euro-Boreal seas (− 8.6). Different Nd sources contributed to this disparity, with radiogenic Nd influxes from westward Panthalassan currents or juvenile volcanic arcs in open oceanic domains, and substantial unradiogenic inputs from old Laurasian and Gondwanan shields for the NW Tethyan platforms. Overall, the εNd(t) values of Euro-Boreal, peri-Tethyan, and western Russian waters varied quite similarly through time, in response to regional changes in oceanic circulation, paleoclimate, continental drainage, and volcanism. Three positive shifts in εNd(t) values occurred successively in these epicontinental seas during the Pliensbachian, in the Aalenian-Bathonian interval, and in the mid-Oxfordian. The first and third events are interpreted as regional incursions of warm surface radiogenic currents from low latitudes. The Aalenian-Bathonian shift seems linked to volcanic outbursts in the NW Tethys and/or circulation of deep currents resulting from extensional events in the Hispanic Corridor and reduced influences of boreal currents crossing the Viking Corridor. In contrast, the εNd(t) signals decreased and remained very low (< − 8) during the global warming events of the Toarcian and Late Oxfordian - Early Tithonian intervals. In these greenhouse contexts, a latitudinal expansion of humid belts could have extended the drainage pathways toward boreal Nd sources of Precambrian age and increased the supply of very unradiogenic crustal-derived inputs to seawater. Finally, a brief negative εNd(t) excursion recorded in parallel with regional drops in seawater temperature suggests that southward circulation of cold unradiogenic Arctic waters occurred in the NW Tethys in the Callovian - Early Oxfordian. All these results show that changes in surface oceanic circulation resulting from the Pangean breakup could have regionally impacted the evolution of seawater temperatures in the NW Tethys.
Gondwana Research (1342-937X) (Elsevier Science Bv), 2015-06 , Vol. 27 , N. 4 , P. 1599-1615

Droits : 2014 International Association for Gondwana Research. Published by Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00179/29015/27443.pdf
DOI:10.1016/j.gr.2014.02.006
http://archimer.ifremer.fr/doc/00179/29015/

Éditeur(s) : Université de La Rochelle, Ecole doctorale Gay Lussac
Résumé : The thesis work is part of the very current issue on mass mortality outbreaks affecting Pacific oyster, C. gigas, spat and juveniles and questions about the involvement of pesticides in this phenomenon. The first part of this thesis was devoted to study the effects of pesticides on hemocyte parameters in the Pacific oyster (in vitro and in vivo). The immunomodulator effect of selected pesticides (alone or in mixture) has been explored principally through flow cytometry. The second part concerned the study of the effects of a pesticides mixture on OsHV-1 itself. No direct effects have been reported on the viral particles in presence of the pollutants. Moreover, pesticide effects on Pacific oysters were also explored through experimental pathology assays after treatment of animals with a polluant mixture. Results showed that pesticide treated oysters appeared more susceptible to the viral infection in experimental conditions. The third part concerned the study of autophagy in the Pacific oyster, C. gigas. The publication of the complete genome in 2012 has opened up new possibilities for the study of innate immunity in this species. The study of autophagy for the first time in oysters consisted in a first step in the in silico search for genes involved in this pathway and the corresponding proteins by Western blotting. Then, the role of this important process in innate immunity has been explored through reproduction infections tests with or without modulators of autophagy. Results showed that autophagy appeared as involved in defence mechanisms against viral and bacterial infection in Pacific oysters.
Le travail de thèse s’inscrit dans la problématique très actuelle des mortalités massives de naissain et de juvéniles d’huîtres creuses, C. gigas, et des questionnements autour de l’implication des pesticides dans ce phénomène. La première partie de la thèse a été consacrée à l’étude des effets de pesticides sur les capacités hémocytaires de l’huître creuse (in vitro et in vivo). L’effet immunomodulateur des xénobiotiques sélectionnés (seul ou en mélange) a été exploré principalement au travers de la cytométrie en flux. La deuxième partie de la thèse a concerné l’étude des effets d’un mélange de pesticides sélectionnés sur le virus OsHV-1 et l’infection qu’il induit chez l’huître creuse. Les effets des pesticides sur le virus lui-même ont été évalués. Les expériences réalisées non pas permis de mettre en évidence dans les conditions testées, de dégradation des particules virales en présence des polluants. D’autre part, leurs effets sur les huîtres elles-mêmes ont été explorés après traitement des animaux avec un mélange de pesticides lors d’essais de pathologie expérimentale. Il a ainsi pu être montré que des huîtres préalablement comtaminées par un mélange de pesticides à des concentrations retrouvées dans l’environnement semblaient être plus sensibles à l’infection virale. La troisième partie de la thèse a concerné l’étude de l’autophagie chez l’huître creuse, C. gigas. La publication du génome complet de cette espèce en 2012 a ouvert de nouvelles possibilités pour étudier l'immunité innée. L’étude de l’autophagie réalisée pour la première fois chez l’huître creuse a consisté lors d’une première étape en la recherche in silico de gènes impliqués dans cette voie et des protéines correspondantes par western blotting. Puis, le rôle de ce processus important dans l’immunité innée a été exploré au travers d’essais de reproduction d’infections en présence ou non de modulateurs de l’autophagie. Les résultats obtenus semblent montrer que l’autophagie soit un processus important pouvant être impliqué dans les capacités de défense de l’huître creuse vis-à-vis d’infections virales et bactériennes.

Droits : 2014 Université de La Rochelle
http://archimer.ifremer.fr/doc/00226/33740/32149.pdf
http://archimer.ifremer.fr/doc/00226/33740/

Éditeur(s) : HAL CCSD Magnolia Press
Résumé : International audience
A new species of wrasse, Macropharyngodon pakoko, is described from the Marquesas Islands, bringing the total number of species of the genus Macropharyngodon to 12. Macropharyngodon pakoko was found at depths from 0-42 m and is endemic to the Marquesas Islands. Macropharyngodon pakoko is similar to M. meleagris, which is widely distributed from the central and western Pacific to Cocos-Keeling in the Indian Ocean, but differs genetically and in several coloration characters: males with irregularly curved black humeral blotch with incomplete iridescent blue border; inverted irregular " U "-shaped band on the cheek; a small black spot at the upper base of the pectoral fin; and background color of the body greenish with faint bluish black spots on each scale. Females lack black pigment on the chest posterior to the ventral attachment of the gill membranes; reddish black blotches on the body are widely spaced, particularly on the head where they are more reddish and half the size of those on body; caudal fin with small, bright yellow spots arranged in narrow vertical bands with pale interspaces; pelvic fins pale with three reddish yellow cross-bands; a small black spot at the upper base of the pectoral fin; and small reddish spots along the base of the anal fin. Juveniles have irregular black blotches on the body, a small black spot instead of an ocellus posteriorly on the dorsal fin and lack large black spots and ocellus on the anal fin.
ISSN: 1175-5326

Droits : http://creativecommons.org/licenses/by/
hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01333340/file/7387-23089-2-PB.pdf
DOI : 10.11646/zootaxa.3857.3.6

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A variety of atypical plume-like structures and focused upwellings that are not rooted in the lower mantle have recently been discussed, and seismological imaging has shown ubiquitous small-scale convection in the uppermost mantle in regions such as the Mediterranean region, the western US, and around the western Pacific. We argue that the three-dimensional return flow and slab fragmentation associated with complex oceanic subduction trajectories within the upper mantle can generate focused upwellings and that these may play a significant role in regional tectonics. The testable surface expressions of this process are the outside-arc alkaline volcanism, topographic swell, and low-velocity seismic anomalies associated with partial melt. Using three-dimensional, simplified numerical subduction models, we show that focused upwellings can be generated both ahead of the slab in the back-arc region (though -five times further inward from the trench than arc-volcanism) and around the lateral edges of the slab (in the order of 100 km away from slab edges). Vertical mass transport, and by inference the associated decompression melting, in these regions appears strongly correlated with the interplay between relative trench motion and subduction velocities. The upward flux of material from the depths is expected to be most pronounced during the first phase of slab descent into the upper mantle or during slab fragmentation. We discuss representative case histories from the Pacific and the Mediterranean where we find possible evidence for such slab-related volcanism.
ISSN: 0012-821X

hal-00553075
https://hal.archives-ouvertes.fr/hal-00553075
DOI : 10.1016/j.epsl.2010.08.012

Éditeur(s) : American Geophysical Union
Résumé : We use seismic reflection and rock sample data to propose that the first-order physiography of New Caledonia Trough and Norfolk Ridge formed in Eocene and Oligocene time and was associated with the onset of subduction and back-arc spreading at the Australia-Pacific plate boundary. Our tectonic model involves an initial Cretaceous rift that is strongly modified by Cenozoic subduction initiation. Hence, we are able to explain (1) complex sedimentary basins of inferred Mesozoic age; (2) a prominent unconformity and onlap surface of middle Eocene to early Miocene age at the base of flat-lying sediments beneath the axis of New Caledonia Trough; (3) gently dipping, variable thickness, and locally deformed Late Cretaceous strata along the margins of the trough; (4) platform morphology and unconformities on either side of the trough that indicate a phase of late Eocene to early Miocene uplift to near sea level, followed by rapid Oligocene and Miocene subsidence of similar to 1100-1800 m; and (5) seismic reflection facies tied to boreholes that suggest absolute tectonic subsidence at the southern end of New Caledonia Trough by 1800-2200 m since Eocene time. The Cenozoic part of the model involves delamination and subduction initiation followed by rapid foundering and rollback of the slab. This created a deep (>2 km) enclosed oceanic trough, similar to 2000 km long and 200-300 km across, in Eocene and Oligocene time as the lower crust detached, with simultaneous uplift and local land development along basin flanks. Disruption of Late Cretaceous and Paleogene strata was minimal during this Cenozoic phase and involved only subtle tilting and local reverse faulting or folding. Basin formation was possible through the action of at least one detachment fault that allowed the lower crust to either be subducted into the mantle or exhumed eastward into Norfolk Basin. We suggest that delamination of the lithosphere, with possible mixing of the lower crust back into the mantle, is more widespread than previously thought and may be commonly associated with subduction initiation, such as Cenozoic events in the Mediterranean and western Pacific.
Tectonics (0278-7407) (American Geophysical Union), 2010-03 , Vol. 29 , N. TC2004 , P. 1-16

Droits : Copyright 2010 by the American Geophysical Union.
http://archimer.ifremer.fr/doc/00001/11271/9283.pdf
DOI:10.1029/2009TC002476
http://archimer.ifremer.fr/doc/00001/11271/

Éditeur(s) : HAL CCSD International Phycological Society
Résumé : International audience
We studied a group of monoraphid diatom species (Bacillariophyceae, Achnanthidiaceae) found in the marine coastal environment of tropical islands of the Caribbean Sea, western Atlantic Ocean, Indian Ocean, South Pacific Ocean, the Adriatic Sea and the Black Sea. Based on light and electron microscope examination, Madinithidium was formally described as a genus new to science with the generitype defined as Madinithidium undulatum. The characteristic features of the valve structure are a strongly developed sternum and raphe sternum, transapical striae formed by a single areola (macroareolae) positioned in small depressions, elevated virgae and coaxial internal central raphe endings. Furthermore, the striae of both raphe and sternum valves are closed by finely perforated hymenes. Madinithidium and Achnanthidium species are difficult to identify correctly with light microscopy since their valves are small and finely structured. Four species recently described from the western Indian Ocean and assigned to Achnanthidium sensu lato – Achnanthidium capitatum, A. flexuistriatum, A. pseudodelicatissimum and A. scalariforme – possessed morphological features permitting their placement into Madinithidium gen. nov. The above-mentioned species were formally transferred to the new genus.
ISSN: 2330-2968

hal-01333391
https://hal-univ-perp.archives-ouvertes.fr/hal-01333391
DOI : 10.2216/14-21R2

Éditeur(s) : Amer Geophysical Union
Résumé : The freshest surface waters in the tropical Pacific are found at its eastern boundary. Using in situ observations, we depict the quasi-permanent presence of a far eastern Pacific fresh pool with Sea Surface Salinity (SSS) lower than 33, which is confined between Panama's west coast and 85W in December and extends westward to 95W in April. Strong SSS fronts are found at the outer edge of this fresh pool. We investigate the seasonal dynamics of the fresh pool using complementary satellite wind, rain, sea level and in situ oceanic current data at the surface, along with hydrographic profiles. The fresh pool appears off Panama due to the strong summer rains associated with the northward migration of the ITCZ over Central America in June. During the second half of the year, the eastward-flowing North Equatorial Counter Current keeps it trapped to the coast and strengthens the SSS front on its western edge. During winter, as the ITCZ moves southward, the north-easterly Panama gap wind creates a south-westward jet-like current in its path with a dipole of Ekman pumping/eddies on its flanks. As a result, upwelling in the Panama Bight brings to the surface cold and salty waters which erode the fresh pool on its eastern side while both the jet current and the enhanced South Equatorial Current stretch the fresh pool westward until it nearly disappears in May. New SMOS satellite SSS data proves able to capture the main seasonal features of the fresh pool and monitor its spatial extent.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2012-04 , Vol. 117 , P. -

Droits : 2012 AGU
http://archimer.ifremer.fr/doc/00072/18311/16581.pdf
DOI:10.1029/2011JC007802
http://archimer.ifremer.fr/doc/00072/18311/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Paleozoic-early Mesozoic geology of Tibet was controlled by the rift-drift, seafloor spreading and subduction zone tectonics of a Paleo-Tethyan realm, which evolved between the West Cathaysides (WC) and the East Cimmerides (EC). Different suture zones with ophiolites and ophiolitic mélanges, high-pressure metamorphic belts, magmatic arcs and accretionary prism complexes separating different terranes mark multiple subduction-accretion systems within this Paleo-Tethyan domain, reminiscent of the modern Western Pacific Ocean. Discrete basins separated by different continental blocks and magmatic arcs constituted a complex paleogeography of Paleo-Tethys, and these oceanic strands were closed as a result of subduction with different polarities during the late Paleozoic-Triassic. The Longmu Tso Shuanghu-Changning Menglian Suture zone (LS-CMS) in Tibet represents the main tectonic boundary between the WC and EC that developed in the Devonian. The East Kunlun-A’nyemaqen oceanic slab was subducted northward beneath the East Kunlun terrane in northern Tibet, whereas the Sumdo oceanic slab was subducted northward beneath the South Qiangtang-North Lhasa terrane in southern Tibet. The Longmu Tso Shuanghu-Changning Menglian and Jinshajiang-Ailaoshan-Song Ma ophiolites were developed and emplaced in subduction-accretion systems with opposite polarities (westward and eastward) beneath the North Qiangtang-Qamdo-Simao-Indochina terrane in central Tibet. The Jinshajiang-Ailaoshan-Song Ma oceanic slab was subducted westward beneath the North Qiangtang-Simao-Indochina terrane along the Jinshajiang and Ailaoshan-Song Ma trenches in a trench-ridge-trench triple junction plate configuration. The Emeishan mantle plume produced a large Permian basaltic terrane, developed on the western passive margin of the South China block. The final closure of the Paleo-Tethyan oceanic branches resulted in continental collisions and development of a vast Indosinian orogenic collage in the latest Triassic-Jurassic.
ISSN: 0743-9547

insu-01119604
https://hal-insu.archives-ouvertes.fr/insu-01119604
https://hal-insu.archives-ouvertes.fr/insu-01119604/document
https://hal-insu.archives-ouvertes.fr/insu-01119604/file/Xu-JAES-2015.pdf
DOI : 10.1016/j.jseaes.2015.01.021

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : It is generally accepted that innovations in tuna purse seine technology have affected fishing operations and the traditional measurement of fishing effort, days fished including searching time. Not much is known, however, about the actual effects of the innovations on fishing performance. Data from the us tuna purse seine fishery in the Western Pacific Ocean were used to determine the impact of drifting Fish Aggregating Devices (fads) on the performance of the us fleet. The results indicate, inter alia, a high rate of success (96%) in catching tuna and high yield rate (37 t/successful set) for fad sets. Log sets were comparable in success rate (94%) and catch rate (36 t/successful set). Unassociated sets, on the other hand, had a higher catch rate (42 t/successful set) than fad sets, but a low success rate, 53 per cent. fad sets significantly improved the fleet's performance.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15296/12655.pdf
http://archimer.ifremer.fr/doc/00042/15296/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recent global kinematic studies reveal that most of the trenches roll back but a significant number of them advance toward the upper plate. Those advancing trenches are mostly located in the Western Pacific and correspond to the subduction of very old, Mesozoic oceanic lithosphere. While retreating trenches are commonly explained by the slab pull action of the descending lithosphere, the origin of advancing trenches is still debated. Since this relationship is dependent upon the adopted reference frame, we select region where geological studies show the variability of trench migration style with time. The Izu-Bonin-Mariana (IBM) region represents a key example. The detailed reconstruction of the trench migration of the IBM subducting system reveals that after a long episode of asymmetric rollback, the IBM trench recently started advancing. We propose that this change from retreating to advancing trench mode results from the subduction of progressively older and stiffer lithospheric material. We test this hypothesis by means of two-dimensional (2-D) numerical models, reproducing the effects of the lithospheric aging during subduction. The result of our numerical tests shows that the entrance of old and stiff lithosphere forces the trench to advance because the increasing stiffness of the slab prevents the slab to unbend once it has subducted. We adapt this physical result to the IBM evolution, showing that the switch from trench retreat to trench advance can reconcile the shape of IBM slab as previously suggested. Finally we discuss the possibility that the subduction of the Cretaceous lithosphere might have triggered the change of the motion of the Pacific plate around 5 Ma.
ISSN: 0012-821X

hal-00455988
https://hal.archives-ouvertes.fr/hal-00455988
DOI : 10.1016/j.epsl.2009.09.042

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : International audience
Assessing population connectivity is necessary to construct effective marine protected areas. This connectivity depends, among other parameters, inherently on species dispersal capacities. Isolation by distance (IBD) is one of the main modes of differentiation in marine species, above all in species presenting low dispersal abilities. This study reports the genetic structuring in the tropical hydrozoan Macrorhynchia phoenicea (sensu Postaire et al., 2016a), a brooding species, from 30 sampling sites in the Western Indian Ocean and the Tropical Southwestern Pacific, using 15 microsatellite loci. At the local scale, genet dispersal relied on asexual propagation at short distance, which was not found at larger scales. Considering one representative per clone, significant positive F-IS values (from -0.327*** to 0.411***) were found within almost all sites. Gene flow was extremely low at all spatial scales, among sites within islands (<10km distance) and among islands (100 to >11,000km distance), with significant pairwise F-ST values (from 0.035*** to 0.645***). A general pattern of IBD was found at the Indo-Pacific scale, but also within ecoregions in the Western Indian Ocean province. Clustering and network analyses identified each island as a potential independent population, while analysis of molecular variance indicated that population genetic differentiation was significant at small (within island) and intermediate (among islands within province) spatial scales. As shown by this species, a brooding life cycle might be corollary of the high population differentiation found in some coastal marine species, thwarting regular dispersal at distances more than a few kilometers and probably leading to high cryptic diversity, each island housing independent evolutionary lineages.
ISSN: 2045-7758

hal-01681593
https://hal.archives-ouvertes.fr/hal-01681593
DOI : 10.1002/ece3.3236

Éditeur(s) : Amer Geophysical Union
Résumé : The hydrological and geochemical properties of the waters constituting the Pacific Equatorial Undercurrent (EUC) determine the properties of the equatorial cold tongue. Understanding and quantifying the various EUC origins is therefore of prime importance. For this purpose, a high-resolution (1/4 degrees) interannual oceanic simulation was analyzed from the western tropical Pacific boundaries to 140 degrees W, using a Lagrangian framework. Waters from the Low-Latitude Western Boundary Currents (LLWBCs) transiting from Vitiaz Strait (the main contributor), from Solomon Strait, and via the Mindanao Current were identified as the principal sources to the EUC. Waters conveyed by the interior ocean off equator are negligible till 180 E. The LLWBCs' waters represent 87% of the EUC transport at 156 degrees E out of which the New Guinea Coastal Undercurrent (NGCU) is as large as 47%. The EUC meridional distribution suggests that the waters originating from Solomon Strait and Mindanao Current mostly remain in the hemisphere from which they originate. Contrastingly, Vitiaz Strait waters are found in both hemispheres. The vertical EUC distribution shows that the lower layer of the EUC is mainly composed of Vitiaz Strait waters. Finally, the source transport distributions were characterized, at their origin and within the EUC, as a function of density. These distributions showed that waters flowing through Vitiaz Strait at densities higher than those of the EUC (down to sigma(theta) = 27.2 kg m(-3)) undergo a diapycnal mixing and lighten during their journey to join the EUC. This lightening supports the suggestion that the NGCU is a major source for the EUC geochemical enrichment.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2011-12 , Vol. 116 , N. C12044 , P. 16 p.

Droits : 2011 by the American Geophysical Union
http://archimer.ifremer.fr/doc/00060/17105/14621.pdf
DOI:10.1029/2011JC007477
http://archimer.ifremer.fr/doc/00060/17105/

Éditeur(s) : Amer Geophysical Union
Résumé : This study focuses on the improved estimation of mesoscale surface ocean circulation obtained by merging TOPEX/Poseidon (T/P) and ERS-1 and -2 altimeter measurements between October 1992 and May 1998. Once carefully intercalibrated and homogenized, these data are merged through an advanced global objective analysis method that allows us to correct for residual long wavelength errors and uses realistic correlation scales of ocean dynamics, The high-resolution (0.25 degrees x 0.25 degrees) merged T/P + ERS-1 and -2 sea level anomaly maps provide more homogeneous and reduced mapping errors than either individual data set and more realistic sea level and geostrophic velocity statistics than T/P data alone. Furthermore, the merged T/P + ERS-1 and -2 maps yield eddy kinetic energy (EKE) levels 30% higher than maps of T/P alone. They also permit realistic global estimates of east and north components of EKE and their seasonal variations, to study EKE sources better. A comparison of velocity statistics with World Ocean Circulation Experiment surface drifters in the North Atlantic shows very good agreement. Comparison with contemporary current meter data in various oceanic regimes also produces comparable levels of energy and similar ratios of northward and eastward energy, showing that the maps are suitable to studying anisotropy. The T/P + ERS zonal and meridional components of the mapped currents usually present comparable rms variability, even though the variability in the Atlantic is more isotropic than that in the Pacific, which exhibits strong zonal changes. The EKE map presents a very detailed description, presumably never before achieved at a global scale. Pronounced seasonal changes of the EKE are found in many regions, notably the northeastern Pacific, the northeastern and northwestern Atlantic, the tropical oceans, and the zonally extended bands centered near 20 degrees S in the Indian and western Pacific Oceans and at 20 degrees N in the northwestern nl Pacific.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2000-08 , Vol. 105 , N. C8 , P. 19477-19498

Droits : 2000 AGU
http://archimer.ifremer.fr/doc/00079/19033/16617.pdf
DOI:10.1029/2000JC900063
http://archimer.ifremer.fr/doc/00079/19033/

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Although coral reefs support the largest concentrations of marine biodiversity worldwide, the extent to which the global system of marine-protected areas (MPAs) represents individual species and the breadth of evolutionary history across the Tree of Life has never been quantified. Here we show that only 5.7% of scleractinian coral species and 21.7% of labrid fish species reach the minimum protection target of 10% of their geographic ranges within MPAs. We also estimate that the current global MPA system secures only 1.7% of the Tree of Life for corals, and 17.6% for fishes. Regionally, the Atlantic and Eastern Pacific show the greatest deficit of protection for corals while for fishes this deficit is located primarily in the Western Indian Ocean and in the Central Pacific. Our results call for a global coordinated expansion of current conservation efforts to fully secure the Tree of Life on coral reefs.
ISSN: 2041-1723

hal-01282920
https://hal-univ-perp.archives-ouvertes.fr/hal-01282920
https://hal-univ-perp.archives-ouvertes.fr/hal-01282920/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01282920/file/ncomms10359.pdf
DOI : 10.1038/ncomms10359

Éditeur(s) : HAL CCSD Wiley
Résumé : [b]Aim[/b][br/] Many tropical tree species have poorly delimited taxonomic boundaries and contain undescribed or cryptic species. We examined the genetic structure of a species complex in the tree genus Carapa in the Neotropics in order to evaluate age, geographic patterns of diversity and evolutionary relationships, and to quantify levels of introgression among currently recognized species.[br/] [br/] [b]Location[/b][br/] Lowland moist forests in the Guiana Shield, the Central and Western Amazon Basin, Chocó and Central America.[br/] [br/] [b]Methods[/b][br/] Genetic structure was analysed using seven nuclear simple sequence repeats (nuSSR), five chloroplast SSRs (cpSSR), and two chloroplast DNA (cpDNA) intergenic sequences (trnH-psbA and trnC-ycf6). Bayesian clustering analysis of the SSR data was used to infer population genetic structure and to assign 324 samples to their most likely genetic cluster. Bayesian coalescence analyses were performed on the two cpDNA markers to estimate evolutionary relationships and divergence times.[br/] [br/] [b]Results[/b][br/] Two genetic clusters (nu_guianensis and nu_surinamensis) were detected, which correspond to the Neotropical species C. guianensis (sensu latu) and C. surinamensis. Fourteen cpDNA haplotypes clustered into six haplogroups distributed between the two nuclear genetic clusters. Divergence between the haplogroups was initiated in the Miocene, with some haplotype structure evolving as recently as the Pleistocene. The absence of complete lineage sorting between the nuclear and chloroplast genomes and the presence of hybrid individuals suggest that interspecific reproductive barriers are incomplete. NuSSR diversity was highest in C. guianensis and, within C. guianensis, cpDNA diversity was highest in the Central and Western Amazon Basin. Regional genetic differentiation was strong but did not conform to an isolation-by-distance process or exhibit a phylogeographical signal.[br/] [br/] [b]Main conclusions[/b][br/] The biogeographical history of Neotropical Carapa appears to have been influenced by events that took place during the Neogene. Our results point to an Amazonian centre of origin and diversification of Neotropical Carapa, with subsequent migration to the Pacific coast of South America and Central America. Gene flow apparently occurs among species, and introgression events are supported by inconsistencies between chloroplast and nuclear lineage sorting. The absence of phylogeographical structure may be a result of the ineffectiveness of geographical barriers among populations and of reproductive isolation mechanisms among incipient and cryptic species in this species complex.
ISSN: 0305-0270

hal-01032395
https://hal.archives-ouvertes.fr/hal-01032395
DOI : 10.1111/j.1365-2699.2011.02678.x